Multiple sequence alignment - TraesCS3B01G298600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G298600 chr3B 100.000 3388 0 0 1652 5039 479297405 479300792 0.000000e+00 6257
1 TraesCS3B01G298600 chr3B 100.000 1094 0 0 1 1094 479295754 479296847 0.000000e+00 2021
2 TraesCS3B01G298600 chr3D 93.268 1931 67 26 2721 4598 367308524 367310444 0.000000e+00 2787
3 TraesCS3B01G298600 chr3D 94.812 983 44 3 1652 2627 367307543 367308525 0.000000e+00 1526
4 TraesCS3B01G298600 chr3D 93.361 241 7 5 840 1076 367306868 367307103 1.040000e-91 348
5 TraesCS3B01G298600 chr3D 92.391 184 8 3 4621 4804 367310427 367310604 1.800000e-64 257
6 TraesCS3B01G298600 chr3D 82.500 240 14 4 4788 5026 367310670 367310882 8.610000e-43 185
7 TraesCS3B01G298600 chr3A 92.909 1918 71 12 2721 4598 489459691 489461583 0.000000e+00 2728
8 TraesCS3B01G298600 chr3A 94.518 985 45 4 1652 2627 489458708 489459692 0.000000e+00 1511
9 TraesCS3B01G298600 chr3A 89.526 401 20 6 4621 5020 489461566 489461945 5.860000e-134 488
10 TraesCS3B01G298600 chr3A 90.547 201 10 5 840 1035 489458116 489458312 1.800000e-64 257
11 TraesCS3B01G298600 chr3A 98.980 98 1 0 2626 2723 383095472 383095569 5.180000e-40 176
12 TraesCS3B01G298600 chr1B 95.695 604 19 2 3065 3661 372996778 372996175 0.000000e+00 965
13 TraesCS3B01G298600 chr1B 97.115 104 2 1 2623 2725 600973522 600973419 1.860000e-39 174
14 TraesCS3B01G298600 chr1B 88.636 132 14 1 3390 3520 632718971 632719102 5.220000e-35 159
15 TraesCS3B01G298600 chr2B 95.199 604 22 2 3065 3661 380731261 380731864 0.000000e+00 948
16 TraesCS3B01G298600 chr2B 84.861 251 27 3 3349 3588 73788586 73788836 5.040000e-60 243
17 TraesCS3B01G298600 chr6B 94.205 604 28 2 3065 3661 298649191 298649794 0.000000e+00 915
18 TraesCS3B01G298600 chr6B 96.226 106 4 0 2626 2731 219879349 219879454 1.860000e-39 174
19 TraesCS3B01G298600 chr5A 98.039 102 2 0 2626 2727 206684545 206684646 1.440000e-40 178
20 TraesCS3B01G298600 chr5A 91.589 107 8 1 559 664 510211990 510211884 4.070000e-31 147
21 TraesCS3B01G298600 chr7D 97.087 103 3 0 2626 2728 41596547 41596649 1.860000e-39 174
22 TraesCS3B01G298600 chr2A 96.226 106 4 0 2626 2731 416627570 416627465 1.860000e-39 174
23 TraesCS3B01G298600 chr5D 97.087 103 2 1 2625 2726 266749453 266749351 6.710000e-39 172
24 TraesCS3B01G298600 chr5D 96.154 104 4 0 2625 2728 301216108 301216211 2.410000e-38 171
25 TraesCS3B01G298600 chr5D 93.805 113 3 4 2615 2724 266749343 266749454 3.120000e-37 167
26 TraesCS3B01G298600 chr5D 90.244 123 11 1 543 664 403633185 403633063 5.220000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G298600 chr3B 479295754 479300792 5038 False 4139.0 6257 100.0000 1 5039 2 chr3B.!!$F1 5038
1 TraesCS3B01G298600 chr3D 367306868 367310882 4014 False 1020.6 2787 91.2664 840 5026 5 chr3D.!!$F1 4186
2 TraesCS3B01G298600 chr3A 489458116 489461945 3829 False 1246.0 2728 91.8750 840 5020 4 chr3A.!!$F2 4180
3 TraesCS3B01G298600 chr1B 372996175 372996778 603 True 965.0 965 95.6950 3065 3661 1 chr1B.!!$R1 596
4 TraesCS3B01G298600 chr2B 380731261 380731864 603 False 948.0 948 95.1990 3065 3661 1 chr2B.!!$F2 596
5 TraesCS3B01G298600 chr6B 298649191 298649794 603 False 915.0 915 94.2050 3065 3661 1 chr6B.!!$F2 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
560 561 0.036671 GGAGAAAACCATCCGTCCGT 60.037 55.0 0.00 0.00 0.00 4.69 F
839 840 0.039346 GGAATAGCTCTCGCGGTACC 60.039 60.0 6.13 0.16 42.32 3.34 F
1090 1097 0.042013 CGAGATCTCGTACGAGTGCC 60.042 60.0 36.67 26.90 46.99 5.01 F
2640 2656 0.928505 TGTATACTCCCTCCGTCCCA 59.071 55.0 4.17 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 1762 1.424638 ACAGTAACTGCTCCACCACT 58.575 50.0 0.0 0.0 34.37 4.00 R
2625 2641 1.961133 AATTTGGGACGGAGGGAGTA 58.039 50.0 0.0 0.0 0.00 2.59 R
2702 2718 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.0 0.0 0.0 0.00 1.82 R
4485 4552 0.038251 CTACAGCAGGCGTCTCAACA 60.038 55.0 0.0 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.862585 ATAAGAACAATTTTTCAAATTGCGAAC 57.137 25.926 17.87 9.50 40.35 3.95
53 54 7.538303 AGAACAATTTTTCAAATTGCGAACT 57.462 28.000 17.87 11.02 40.35 3.01
54 55 7.973601 AGAACAATTTTTCAAATTGCGAACTT 58.026 26.923 17.87 7.73 40.35 2.66
55 56 8.450180 AGAACAATTTTTCAAATTGCGAACTTT 58.550 25.926 17.87 7.18 40.35 2.66
56 57 9.695884 GAACAATTTTTCAAATTGCGAACTTTA 57.304 25.926 17.87 0.00 40.35 1.85
58 59 9.862585 ACAATTTTTCAAATTGCGAACTTTATC 57.137 25.926 17.87 0.00 40.35 1.75
62 63 6.689178 TTCAAATTGCGAACTTTATCTTGC 57.311 33.333 0.00 0.00 0.00 4.01
63 64 5.767269 TCAAATTGCGAACTTTATCTTGCA 58.233 33.333 0.00 0.00 0.00 4.08
64 65 6.212235 TCAAATTGCGAACTTTATCTTGCAA 58.788 32.000 0.00 0.00 45.15 4.08
65 66 6.699204 TCAAATTGCGAACTTTATCTTGCAAA 59.301 30.769 0.00 0.00 44.37 3.68
66 67 7.223582 TCAAATTGCGAACTTTATCTTGCAAAA 59.776 29.630 0.00 0.00 44.37 2.44
67 68 5.881637 TTGCGAACTTTATCTTGCAAAAC 57.118 34.783 0.00 0.00 39.15 2.43
68 69 3.971871 TGCGAACTTTATCTTGCAAAACG 59.028 39.130 0.00 0.00 0.00 3.60
69 70 3.972502 GCGAACTTTATCTTGCAAAACGT 59.027 39.130 0.00 0.00 0.00 3.99
70 71 4.143824 GCGAACTTTATCTTGCAAAACGTG 60.144 41.667 0.00 0.00 0.00 4.49
71 72 5.201910 CGAACTTTATCTTGCAAAACGTGA 58.798 37.500 0.00 0.00 0.00 4.35
72 73 5.679355 CGAACTTTATCTTGCAAAACGTGAA 59.321 36.000 0.00 0.00 0.00 3.18
73 74 6.343924 CGAACTTTATCTTGCAAAACGTGAAC 60.344 38.462 0.00 0.00 0.00 3.18
74 75 4.967575 ACTTTATCTTGCAAAACGTGAACG 59.032 37.500 0.00 0.40 46.33 3.95
93 94 9.596204 CGTGAACGTTTTCTAAAATTTACAAAC 57.404 29.630 0.46 0.00 32.36 2.93
161 162 9.798885 TTCAACTTTACAAACATTTTGAAAACG 57.201 25.926 5.67 0.00 30.60 3.60
162 163 7.952637 TCAACTTTACAAACATTTTGAAAACGC 59.047 29.630 5.67 0.00 0.00 4.84
163 164 7.352719 ACTTTACAAACATTTTGAAAACGCA 57.647 28.000 5.67 0.00 0.00 5.24
164 165 7.797819 ACTTTACAAACATTTTGAAAACGCAA 58.202 26.923 5.67 0.00 0.00 4.85
165 166 8.283291 ACTTTACAAACATTTTGAAAACGCAAA 58.717 25.926 5.67 0.00 36.08 3.68
167 168 9.445786 TTTACAAACATTTTGAAAACGCAAAAA 57.554 22.222 5.67 0.00 46.91 1.94
168 169 9.612620 TTACAAACATTTTGAAAACGCAAAAAT 57.387 22.222 5.67 0.00 46.91 1.82
169 170 8.512800 ACAAACATTTTGAAAACGCAAAAATT 57.487 23.077 5.67 2.67 46.91 1.82
170 171 8.972349 ACAAACATTTTGAAAACGCAAAAATTT 58.028 22.222 5.67 7.50 46.91 1.82
171 172 9.236216 CAAACATTTTGAAAACGCAAAAATTTG 57.764 25.926 17.96 17.96 46.91 2.32
203 204 9.455847 AAATTGAGAAGATTTTCTGAAAAGACG 57.544 29.630 19.14 0.00 43.63 4.18
204 205 7.786178 TTGAGAAGATTTTCTGAAAAGACGA 57.214 32.000 19.14 0.00 43.63 4.20
205 206 7.786178 TGAGAAGATTTTCTGAAAAGACGAA 57.214 32.000 19.14 0.00 43.63 3.85
206 207 7.630924 TGAGAAGATTTTCTGAAAAGACGAAC 58.369 34.615 19.14 10.68 43.63 3.95
207 208 7.279981 TGAGAAGATTTTCTGAAAAGACGAACA 59.720 33.333 19.14 12.61 43.63 3.18
208 209 7.985476 AGAAGATTTTCTGAAAAGACGAACAA 58.015 30.769 19.14 0.00 42.04 2.83
209 210 8.624776 AGAAGATTTTCTGAAAAGACGAACAAT 58.375 29.630 19.14 1.29 42.04 2.71
210 211 9.237846 GAAGATTTTCTGAAAAGACGAACAATT 57.762 29.630 19.14 6.95 33.22 2.32
211 212 9.586435 AAGATTTTCTGAAAAGACGAACAATTT 57.414 25.926 19.14 0.15 33.22 1.82
212 213 9.586435 AGATTTTCTGAAAAGACGAACAATTTT 57.414 25.926 19.14 0.00 33.22 1.82
213 214 9.835315 GATTTTCTGAAAAGACGAACAATTTTC 57.165 29.630 19.14 5.41 41.26 2.29
214 215 7.749539 TTTCTGAAAAGACGAACAATTTTCC 57.250 32.000 0.00 0.00 40.54 3.13
215 216 6.693315 TCTGAAAAGACGAACAATTTTCCT 57.307 33.333 7.05 0.00 40.54 3.36
216 217 7.795482 TCTGAAAAGACGAACAATTTTCCTA 57.205 32.000 7.05 0.00 40.54 2.94
217 218 8.215926 TCTGAAAAGACGAACAATTTTCCTAA 57.784 30.769 7.05 0.00 40.54 2.69
218 219 8.846211 TCTGAAAAGACGAACAATTTTCCTAAT 58.154 29.630 7.05 0.00 40.54 1.73
219 220 9.463443 CTGAAAAGACGAACAATTTTCCTAATT 57.537 29.630 7.05 0.00 40.54 1.40
220 221 9.810545 TGAAAAGACGAACAATTTTCCTAATTT 57.189 25.926 7.05 0.00 40.54 1.82
244 245 8.749841 TTTTTGAAGATTTTCTGAAAACACGA 57.250 26.923 17.06 6.90 34.31 4.35
245 246 8.749841 TTTTGAAGATTTTCTGAAAACACGAA 57.250 26.923 17.06 11.43 34.31 3.85
246 247 8.925161 TTTGAAGATTTTCTGAAAACACGAAT 57.075 26.923 17.06 1.16 34.31 3.34
247 248 8.925161 TTGAAGATTTTCTGAAAACACGAATT 57.075 26.923 17.06 6.71 34.31 2.17
248 249 8.925161 TGAAGATTTTCTGAAAACACGAATTT 57.075 26.923 17.06 0.00 34.31 1.82
249 250 9.364989 TGAAGATTTTCTGAAAACACGAATTTT 57.635 25.926 17.06 3.12 33.13 1.82
408 409 9.645059 AAAGGAAAGAAAAGAAGAAAGAAACAG 57.355 29.630 0.00 0.00 0.00 3.16
409 410 8.581253 AGGAAAGAAAAGAAGAAAGAAACAGA 57.419 30.769 0.00 0.00 0.00 3.41
410 411 9.025041 AGGAAAGAAAAGAAGAAAGAAACAGAA 57.975 29.630 0.00 0.00 0.00 3.02
411 412 9.639601 GGAAAGAAAAGAAGAAAGAAACAGAAA 57.360 29.630 0.00 0.00 0.00 2.52
458 459 9.478768 AAAGAAACAAAAAGTAAAAACGGAAGA 57.521 25.926 0.00 0.00 0.00 2.87
459 460 9.478768 AAGAAACAAAAAGTAAAAACGGAAGAA 57.521 25.926 0.00 0.00 0.00 2.52
460 461 9.478768 AGAAACAAAAAGTAAAAACGGAAGAAA 57.521 25.926 0.00 0.00 0.00 2.52
482 483 6.925610 AAAAAGACCCAAAAGAAAATCAGC 57.074 33.333 0.00 0.00 0.00 4.26
483 484 4.607293 AAGACCCAAAAGAAAATCAGCC 57.393 40.909 0.00 0.00 0.00 4.85
484 485 3.575805 AGACCCAAAAGAAAATCAGCCA 58.424 40.909 0.00 0.00 0.00 4.75
485 486 3.321968 AGACCCAAAAGAAAATCAGCCAC 59.678 43.478 0.00 0.00 0.00 5.01
486 487 3.037549 ACCCAAAAGAAAATCAGCCACA 58.962 40.909 0.00 0.00 0.00 4.17
487 488 3.454082 ACCCAAAAGAAAATCAGCCACAA 59.546 39.130 0.00 0.00 0.00 3.33
488 489 4.080638 ACCCAAAAGAAAATCAGCCACAAA 60.081 37.500 0.00 0.00 0.00 2.83
489 490 4.880696 CCCAAAAGAAAATCAGCCACAAAA 59.119 37.500 0.00 0.00 0.00 2.44
490 491 5.356470 CCCAAAAGAAAATCAGCCACAAAAA 59.644 36.000 0.00 0.00 0.00 1.94
521 522 4.600692 AAAAAGAGAAACCGATTTGGGG 57.399 40.909 0.00 0.00 44.64 4.96
522 523 3.518992 AAAGAGAAACCGATTTGGGGA 57.481 42.857 0.00 0.00 44.64 4.81
523 524 3.518992 AAGAGAAACCGATTTGGGGAA 57.481 42.857 0.00 0.00 44.64 3.97
524 525 2.791655 AGAGAAACCGATTTGGGGAAC 58.208 47.619 0.00 0.00 44.64 3.62
540 541 1.611977 GGAACCTTCTTCCCAAAACCG 59.388 52.381 0.00 0.00 32.48 4.44
541 542 1.611977 GAACCTTCTTCCCAAAACCGG 59.388 52.381 0.00 0.00 0.00 5.28
551 552 1.404843 CCAAAACCGGGAGAAAACCA 58.595 50.000 6.32 0.00 0.00 3.67
552 553 1.967779 CCAAAACCGGGAGAAAACCAT 59.032 47.619 6.32 0.00 0.00 3.55
553 554 2.029380 CCAAAACCGGGAGAAAACCATC 60.029 50.000 6.32 0.00 0.00 3.51
554 555 1.919240 AAACCGGGAGAAAACCATCC 58.081 50.000 6.32 0.00 34.64 3.51
555 556 0.322187 AACCGGGAGAAAACCATCCG 60.322 55.000 6.32 0.00 40.32 4.18
556 557 1.298667 CCGGGAGAAAACCATCCGT 59.701 57.895 0.00 0.00 39.13 4.69
557 558 0.743345 CCGGGAGAAAACCATCCGTC 60.743 60.000 0.00 0.00 39.13 4.79
558 559 0.743345 CGGGAGAAAACCATCCGTCC 60.743 60.000 0.00 0.00 36.38 4.79
559 560 0.743345 GGGAGAAAACCATCCGTCCG 60.743 60.000 0.00 0.00 36.38 4.79
560 561 0.036671 GGAGAAAACCATCCGTCCGT 60.037 55.000 0.00 0.00 0.00 4.69
561 562 1.205417 GGAGAAAACCATCCGTCCGTA 59.795 52.381 0.00 0.00 0.00 4.02
562 563 2.354003 GGAGAAAACCATCCGTCCGTAA 60.354 50.000 0.00 0.00 0.00 3.18
563 564 3.528532 GAGAAAACCATCCGTCCGTAAT 58.471 45.455 0.00 0.00 0.00 1.89
564 565 4.441913 GGAGAAAACCATCCGTCCGTAATA 60.442 45.833 0.00 0.00 0.00 0.98
565 566 4.690122 AGAAAACCATCCGTCCGTAATAG 58.310 43.478 0.00 0.00 0.00 1.73
566 567 2.521105 AACCATCCGTCCGTAATAGC 57.479 50.000 0.00 0.00 0.00 2.97
567 568 1.700955 ACCATCCGTCCGTAATAGCT 58.299 50.000 0.00 0.00 0.00 3.32
568 569 2.867624 ACCATCCGTCCGTAATAGCTA 58.132 47.619 0.00 0.00 0.00 3.32
569 570 2.555757 ACCATCCGTCCGTAATAGCTAC 59.444 50.000 0.00 0.00 0.00 3.58
570 571 2.555325 CCATCCGTCCGTAATAGCTACA 59.445 50.000 0.00 0.00 0.00 2.74
571 572 3.562505 CATCCGTCCGTAATAGCTACAC 58.437 50.000 0.00 0.00 0.00 2.90
572 573 2.923121 TCCGTCCGTAATAGCTACACT 58.077 47.619 0.00 0.00 0.00 3.55
573 574 4.071961 TCCGTCCGTAATAGCTACACTA 57.928 45.455 0.00 0.00 34.64 2.74
574 575 4.450976 TCCGTCCGTAATAGCTACACTAA 58.549 43.478 0.00 0.00 33.57 2.24
575 576 4.273480 TCCGTCCGTAATAGCTACACTAAC 59.727 45.833 0.00 0.00 33.57 2.34
576 577 4.531332 CGTCCGTAATAGCTACACTAACC 58.469 47.826 0.00 0.00 33.57 2.85
577 578 4.035558 CGTCCGTAATAGCTACACTAACCA 59.964 45.833 0.00 0.00 33.57 3.67
578 579 5.277047 GTCCGTAATAGCTACACTAACCAC 58.723 45.833 0.00 0.00 33.57 4.16
579 580 5.067023 GTCCGTAATAGCTACACTAACCACT 59.933 44.000 0.00 0.00 33.57 4.00
580 581 6.260936 GTCCGTAATAGCTACACTAACCACTA 59.739 42.308 0.00 0.00 33.57 2.74
581 582 6.828273 TCCGTAATAGCTACACTAACCACTAA 59.172 38.462 0.00 0.00 33.57 2.24
582 583 6.914757 CCGTAATAGCTACACTAACCACTAAC 59.085 42.308 0.00 0.00 33.57 2.34
583 584 7.415541 CCGTAATAGCTACACTAACCACTAACA 60.416 40.741 0.00 0.00 33.57 2.41
584 585 7.642978 CGTAATAGCTACACTAACCACTAACAG 59.357 40.741 0.00 0.00 33.57 3.16
585 586 4.803098 AGCTACACTAACCACTAACAGG 57.197 45.455 0.00 0.00 0.00 4.00
586 587 3.056035 AGCTACACTAACCACTAACAGGC 60.056 47.826 0.00 0.00 0.00 4.85
587 588 2.853235 ACACTAACCACTAACAGGCC 57.147 50.000 0.00 0.00 0.00 5.19
588 589 1.001633 ACACTAACCACTAACAGGCCG 59.998 52.381 0.00 0.00 0.00 6.13
589 590 0.611714 ACTAACCACTAACAGGCCGG 59.388 55.000 0.00 0.00 0.00 6.13
590 591 0.743345 CTAACCACTAACAGGCCGGC 60.743 60.000 21.18 21.18 0.00 6.13
591 592 2.187896 TAACCACTAACAGGCCGGCC 62.188 60.000 39.29 39.29 0.00 6.13
593 594 2.363975 CCACTAACAGGCCGGCCTA 61.364 63.158 46.42 30.80 46.28 3.93
594 595 1.144057 CACTAACAGGCCGGCCTAG 59.856 63.158 46.42 38.91 46.28 3.02
595 596 1.001248 ACTAACAGGCCGGCCTAGA 59.999 57.895 46.42 31.19 46.28 2.43
596 597 0.398664 ACTAACAGGCCGGCCTAGAT 60.399 55.000 46.42 34.08 46.28 1.98
597 598 0.318762 CTAACAGGCCGGCCTAGATC 59.681 60.000 46.42 19.49 46.28 2.75
598 599 1.461091 TAACAGGCCGGCCTAGATCG 61.461 60.000 46.42 34.42 46.28 3.69
599 600 4.671569 CAGGCCGGCCTAGATCGC 62.672 72.222 46.42 17.81 46.28 4.58
603 604 4.685026 CCGGCCTAGATCGCGTCG 62.685 72.222 5.77 0.00 0.00 5.12
605 606 3.967335 GGCCTAGATCGCGTCGCT 61.967 66.667 16.36 4.62 0.00 4.93
606 607 2.614446 GGCCTAGATCGCGTCGCTA 61.614 63.158 16.36 4.44 0.00 4.26
607 608 1.154376 GCCTAGATCGCGTCGCTAG 60.154 63.158 16.36 18.71 33.18 3.42
608 609 1.154376 CCTAGATCGCGTCGCTAGC 60.154 63.158 16.36 7.35 32.28 3.42
609 610 1.570347 CCTAGATCGCGTCGCTAGCT 61.570 60.000 16.36 15.17 32.28 3.32
610 611 0.179235 CTAGATCGCGTCGCTAGCTC 60.179 60.000 13.09 5.10 0.00 4.09
611 612 1.887909 TAGATCGCGTCGCTAGCTCG 61.888 60.000 13.09 19.69 0.00 5.03
612 613 3.509296 GATCGCGTCGCTAGCTCGT 62.509 63.158 22.87 9.62 0.00 4.18
613 614 3.791928 ATCGCGTCGCTAGCTCGTG 62.792 63.158 25.53 25.53 36.60 4.35
614 615 4.516135 CGCGTCGCTAGCTCGTGA 62.516 66.667 26.59 10.60 37.28 4.35
615 616 2.202440 GCGTCGCTAGCTCGTGAA 60.202 61.111 22.87 0.00 0.00 3.18
616 617 2.497928 GCGTCGCTAGCTCGTGAAC 61.498 63.158 22.87 8.91 0.00 3.18
617 618 1.868251 CGTCGCTAGCTCGTGAACC 60.868 63.158 13.93 0.00 0.00 3.62
618 619 1.507174 GTCGCTAGCTCGTGAACCT 59.493 57.895 13.93 0.00 0.00 3.50
619 620 0.798771 GTCGCTAGCTCGTGAACCTG 60.799 60.000 13.93 0.00 0.00 4.00
620 621 1.213013 CGCTAGCTCGTGAACCTGT 59.787 57.895 13.93 0.00 0.00 4.00
621 622 1.073216 CGCTAGCTCGTGAACCTGTG 61.073 60.000 13.93 0.00 0.00 3.66
622 623 1.355066 GCTAGCTCGTGAACCTGTGC 61.355 60.000 7.70 0.00 0.00 4.57
623 624 1.073216 CTAGCTCGTGAACCTGTGCG 61.073 60.000 0.00 0.00 0.00 5.34
624 625 1.520600 TAGCTCGTGAACCTGTGCGA 61.521 55.000 0.00 0.00 0.00 5.10
625 626 1.954146 GCTCGTGAACCTGTGCGAA 60.954 57.895 0.00 0.00 32.84 4.70
626 627 1.891060 GCTCGTGAACCTGTGCGAAG 61.891 60.000 0.00 0.00 32.84 3.79
642 643 4.379243 AGCCCCGACAGCTTGACG 62.379 66.667 0.00 0.00 37.24 4.35
644 645 4.680237 CCCCGACAGCTTGACGCA 62.680 66.667 0.00 0.00 42.61 5.24
645 646 2.664851 CCCGACAGCTTGACGCAA 60.665 61.111 0.00 0.00 42.61 4.85
646 647 2.551270 CCGACAGCTTGACGCAAC 59.449 61.111 0.00 0.00 42.61 4.17
647 648 2.168621 CGACAGCTTGACGCAACG 59.831 61.111 0.00 0.00 42.61 4.10
648 649 2.585869 CGACAGCTTGACGCAACGT 61.586 57.895 0.00 0.00 45.10 3.99
649 650 1.083401 GACAGCTTGACGCAACGTG 60.083 57.895 0.00 0.00 41.37 4.49
650 651 2.425773 CAGCTTGACGCAACGTGC 60.426 61.111 0.00 0.00 41.37 5.34
661 662 1.847818 GCAACGTGCGTCATATAGGA 58.152 50.000 0.00 0.00 31.71 2.94
662 663 2.404215 GCAACGTGCGTCATATAGGAT 58.596 47.619 0.00 0.00 31.71 3.24
663 664 2.800544 GCAACGTGCGTCATATAGGATT 59.199 45.455 0.00 0.00 31.71 3.01
664 665 3.120991 GCAACGTGCGTCATATAGGATTC 60.121 47.826 0.00 0.00 31.71 2.52
665 666 3.299340 ACGTGCGTCATATAGGATTCC 57.701 47.619 0.00 0.00 0.00 3.01
666 667 2.029290 ACGTGCGTCATATAGGATTCCC 60.029 50.000 0.00 0.00 0.00 3.97
667 668 2.674177 CGTGCGTCATATAGGATTCCCC 60.674 54.545 0.00 0.00 0.00 4.81
717 718 5.391312 AAAAAGTTGCTAACAGGCCATAG 57.609 39.130 5.01 5.65 0.00 2.23
718 719 2.044123 AGTTGCTAACAGGCCATAGC 57.956 50.000 21.72 21.72 43.78 2.97
719 720 1.561542 AGTTGCTAACAGGCCATAGCT 59.438 47.619 25.94 11.24 43.85 3.32
720 721 1.943340 GTTGCTAACAGGCCATAGCTC 59.057 52.381 25.94 18.36 43.85 4.09
721 722 1.500474 TGCTAACAGGCCATAGCTCT 58.500 50.000 25.94 0.00 43.85 4.09
722 723 1.139654 TGCTAACAGGCCATAGCTCTG 59.860 52.381 25.94 9.89 43.85 3.35
723 724 1.139853 GCTAACAGGCCATAGCTCTGT 59.860 52.381 21.40 6.82 46.18 3.41
726 727 2.990066 ACAGGCCATAGCTCTGTTAC 57.010 50.000 5.01 0.00 43.60 2.50
727 728 2.472029 ACAGGCCATAGCTCTGTTACT 58.528 47.619 5.01 0.00 43.60 2.24
728 729 2.169352 ACAGGCCATAGCTCTGTTACTG 59.831 50.000 5.01 1.39 43.60 2.74
729 730 2.169352 CAGGCCATAGCTCTGTTACTGT 59.831 50.000 5.01 0.00 39.73 3.55
730 731 3.384789 CAGGCCATAGCTCTGTTACTGTA 59.615 47.826 5.01 0.00 39.73 2.74
731 732 3.639094 AGGCCATAGCTCTGTTACTGTAG 59.361 47.826 5.01 0.00 39.73 2.74
732 733 3.385111 GGCCATAGCTCTGTTACTGTAGT 59.615 47.826 0.00 0.00 39.73 2.73
733 734 4.500035 GGCCATAGCTCTGTTACTGTAGTC 60.500 50.000 0.00 0.00 39.73 2.59
734 735 4.790123 GCCATAGCTCTGTTACTGTAGTCG 60.790 50.000 0.00 0.00 35.50 4.18
735 736 2.923605 AGCTCTGTTACTGTAGTCGC 57.076 50.000 0.00 0.00 0.00 5.19
736 737 2.438411 AGCTCTGTTACTGTAGTCGCT 58.562 47.619 0.00 0.00 0.00 4.93
737 738 2.420722 AGCTCTGTTACTGTAGTCGCTC 59.579 50.000 0.00 0.00 0.00 5.03
738 739 2.788407 GCTCTGTTACTGTAGTCGCTCG 60.788 54.545 0.00 0.00 0.00 5.03
739 740 1.129998 TCTGTTACTGTAGTCGCTCGC 59.870 52.381 0.00 0.00 0.00 5.03
740 741 0.179207 TGTTACTGTAGTCGCTCGCG 60.179 55.000 0.00 0.00 41.35 5.87
741 742 1.226211 TTACTGTAGTCGCTCGCGC 60.226 57.895 0.00 0.00 39.59 6.86
742 743 1.914531 TTACTGTAGTCGCTCGCGCA 61.915 55.000 8.75 0.00 39.59 6.09
743 744 1.914531 TACTGTAGTCGCTCGCGCAA 61.915 55.000 8.75 0.00 39.59 4.85
744 745 2.049894 TGTAGTCGCTCGCGCAAA 60.050 55.556 8.75 0.00 39.59 3.68
745 746 1.614227 CTGTAGTCGCTCGCGCAAAA 61.614 55.000 8.75 0.00 39.59 2.44
746 747 1.011968 TGTAGTCGCTCGCGCAAAAT 61.012 50.000 8.75 0.00 39.59 1.82
747 748 0.918619 GTAGTCGCTCGCGCAAAATA 59.081 50.000 8.75 0.00 39.59 1.40
748 749 1.322338 GTAGTCGCTCGCGCAAAATAA 59.678 47.619 8.75 0.00 39.59 1.40
749 750 0.793861 AGTCGCTCGCGCAAAATAAA 59.206 45.000 8.75 0.00 39.59 1.40
750 751 0.898575 GTCGCTCGCGCAAAATAAAC 59.101 50.000 8.75 0.00 39.59 2.01
751 752 0.517539 TCGCTCGCGCAAAATAAACG 60.518 50.000 8.75 0.00 39.59 3.60
761 762 3.844099 CGCAAAATAAACGCTAACAGACC 59.156 43.478 0.00 0.00 0.00 3.85
762 763 3.844099 GCAAAATAAACGCTAACAGACCG 59.156 43.478 0.00 0.00 0.00 4.79
763 764 3.734776 AAATAAACGCTAACAGACCGC 57.265 42.857 0.00 0.00 0.00 5.68
769 770 3.771160 CTAACAGACCGCGGCCCT 61.771 66.667 28.58 20.38 0.00 5.19
770 771 3.310860 CTAACAGACCGCGGCCCTT 62.311 63.158 28.58 13.96 0.00 3.95
771 772 2.798148 CTAACAGACCGCGGCCCTTT 62.798 60.000 28.58 16.24 0.00 3.11
772 773 1.543065 TAACAGACCGCGGCCCTTTA 61.543 55.000 28.58 15.13 0.00 1.85
773 774 2.818274 CAGACCGCGGCCCTTTAC 60.818 66.667 28.58 8.05 0.00 2.01
774 775 3.001406 AGACCGCGGCCCTTTACT 61.001 61.111 28.58 10.32 0.00 2.24
775 776 2.818274 GACCGCGGCCCTTTACTG 60.818 66.667 28.58 0.00 0.00 2.74
776 777 3.600898 GACCGCGGCCCTTTACTGT 62.601 63.158 28.58 0.00 0.00 3.55
777 778 3.124921 CCGCGGCCCTTTACTGTG 61.125 66.667 14.67 0.00 0.00 3.66
778 779 3.124921 CGCGGCCCTTTACTGTGG 61.125 66.667 0.00 0.00 0.00 4.17
779 780 2.033602 GCGGCCCTTTACTGTGGT 59.966 61.111 0.00 0.00 0.00 4.16
780 781 2.038837 GCGGCCCTTTACTGTGGTC 61.039 63.158 0.00 0.00 0.00 4.02
781 782 1.740296 CGGCCCTTTACTGTGGTCG 60.740 63.158 0.00 0.00 41.28 4.79
782 783 1.373812 GGCCCTTTACTGTGGTCGT 59.626 57.895 0.00 0.00 0.00 4.34
783 784 0.250597 GGCCCTTTACTGTGGTCGTT 60.251 55.000 0.00 0.00 0.00 3.85
784 785 1.154197 GCCCTTTACTGTGGTCGTTC 58.846 55.000 0.00 0.00 0.00 3.95
785 786 1.425412 CCCTTTACTGTGGTCGTTCG 58.575 55.000 0.00 0.00 0.00 3.95
786 787 0.788391 CCTTTACTGTGGTCGTTCGC 59.212 55.000 0.00 0.00 0.00 4.70
787 788 1.604693 CCTTTACTGTGGTCGTTCGCT 60.605 52.381 0.00 0.00 0.00 4.93
788 789 1.455786 CTTTACTGTGGTCGTTCGCTG 59.544 52.381 0.00 0.00 0.00 5.18
789 790 0.942410 TTACTGTGGTCGTTCGCTGC 60.942 55.000 0.00 0.00 0.00 5.25
790 791 3.767230 CTGTGGTCGTTCGCTGCG 61.767 66.667 17.25 17.25 0.00 5.18
791 792 4.273257 TGTGGTCGTTCGCTGCGA 62.273 61.111 22.24 22.24 35.89 5.10
792 793 3.470567 GTGGTCGTTCGCTGCGAG 61.471 66.667 24.61 14.55 39.14 5.03
793 794 3.666253 TGGTCGTTCGCTGCGAGA 61.666 61.111 24.61 16.71 39.14 4.04
794 795 2.876645 GGTCGTTCGCTGCGAGAG 60.877 66.667 24.61 21.00 39.14 3.20
795 796 2.176055 GTCGTTCGCTGCGAGAGA 59.824 61.111 24.61 22.79 39.14 3.10
796 797 1.226435 GTCGTTCGCTGCGAGAGAT 60.226 57.895 24.61 0.00 39.14 2.75
797 798 1.062685 TCGTTCGCTGCGAGAGATC 59.937 57.895 24.61 12.58 37.14 2.75
798 799 1.941734 CGTTCGCTGCGAGAGATCC 60.942 63.158 24.61 8.90 37.14 3.36
799 800 1.590259 GTTCGCTGCGAGAGATCCC 60.590 63.158 24.61 4.85 37.14 3.85
800 801 3.126074 TTCGCTGCGAGAGATCCCG 62.126 63.158 24.61 0.00 37.14 5.14
801 802 3.893763 CGCTGCGAGAGATCCCGT 61.894 66.667 18.66 0.00 0.00 5.28
802 803 2.543802 CGCTGCGAGAGATCCCGTA 61.544 63.158 18.66 0.00 0.00 4.02
803 804 1.008309 GCTGCGAGAGATCCCGTAC 60.008 63.158 0.00 0.00 0.00 3.67
804 805 1.280142 CTGCGAGAGATCCCGTACG 59.720 63.158 8.69 8.69 0.00 3.67
805 806 1.437772 CTGCGAGAGATCCCGTACGT 61.438 60.000 15.21 0.00 0.00 3.57
806 807 1.279238 GCGAGAGATCCCGTACGTC 59.721 63.158 15.21 5.34 0.00 4.34
807 808 1.159098 GCGAGAGATCCCGTACGTCT 61.159 60.000 15.21 10.58 0.00 4.18
808 809 0.860533 CGAGAGATCCCGTACGTCTC 59.139 60.000 20.76 20.76 38.88 3.36
809 810 0.860533 GAGAGATCCCGTACGTCTCG 59.139 60.000 21.58 0.00 42.40 4.04
810 811 1.159098 AGAGATCCCGTACGTCTCGC 61.159 60.000 21.58 13.72 42.40 5.03
811 812 1.153208 AGATCCCGTACGTCTCGCT 60.153 57.895 15.21 1.93 0.00 4.93
812 813 1.159098 AGATCCCGTACGTCTCGCTC 61.159 60.000 15.21 2.35 0.00 5.03
813 814 1.434622 GATCCCGTACGTCTCGCTCA 61.435 60.000 15.21 0.00 0.00 4.26
814 815 1.028330 ATCCCGTACGTCTCGCTCAA 61.028 55.000 15.21 0.00 0.00 3.02
815 816 1.028330 TCCCGTACGTCTCGCTCAAT 61.028 55.000 15.21 0.00 0.00 2.57
816 817 0.866061 CCCGTACGTCTCGCTCAATG 60.866 60.000 15.21 0.00 0.00 2.82
817 818 1.472276 CCGTACGTCTCGCTCAATGC 61.472 60.000 15.21 0.00 38.57 3.56
828 829 1.876322 GCTCAATGCGAGGAATAGCT 58.124 50.000 0.00 0.00 42.55 3.32
829 830 1.797635 GCTCAATGCGAGGAATAGCTC 59.202 52.381 0.00 0.00 42.55 4.09
830 831 2.547642 GCTCAATGCGAGGAATAGCTCT 60.548 50.000 0.00 0.00 42.55 4.09
831 832 3.316283 CTCAATGCGAGGAATAGCTCTC 58.684 50.000 0.00 0.00 38.18 3.20
834 835 4.524305 CGAGGAATAGCTCTCGCG 57.476 61.111 9.31 0.00 44.68 5.87
835 836 1.081774 CGAGGAATAGCTCTCGCGG 60.082 63.158 6.13 0.00 44.68 6.46
836 837 1.787057 CGAGGAATAGCTCTCGCGGT 61.787 60.000 6.13 0.00 44.68 5.68
837 838 1.236628 GAGGAATAGCTCTCGCGGTA 58.763 55.000 6.13 0.00 42.32 4.02
838 839 0.953003 AGGAATAGCTCTCGCGGTAC 59.047 55.000 6.13 0.00 42.32 3.34
839 840 0.039346 GGAATAGCTCTCGCGGTACC 60.039 60.000 6.13 0.16 42.32 3.34
840 841 0.039346 GAATAGCTCTCGCGGTACCC 60.039 60.000 6.13 0.00 42.32 3.69
841 842 1.461911 AATAGCTCTCGCGGTACCCC 61.462 60.000 6.13 0.00 42.32 4.95
842 843 2.635787 ATAGCTCTCGCGGTACCCCA 62.636 60.000 6.13 0.00 42.32 4.96
843 844 4.509737 GCTCTCGCGGTACCCCAC 62.510 72.222 6.13 0.00 0.00 4.61
844 845 2.754658 CTCTCGCGGTACCCCACT 60.755 66.667 6.13 0.00 0.00 4.00
928 930 1.048160 CCTTCTCTCTCCTCTGGGCC 61.048 65.000 0.00 0.00 0.00 5.80
953 958 2.969628 TCTCCCAAATCCAGCCAAAAA 58.030 42.857 0.00 0.00 0.00 1.94
1044 1051 2.594592 GCGGTGCTGAACAACCCT 60.595 61.111 0.00 0.00 29.21 4.34
1059 1066 3.326880 ACAACCCTACCTCTTTCGTCAAT 59.673 43.478 0.00 0.00 0.00 2.57
1076 1083 3.107601 TCAATCCCTTCCAGTTCGAGAT 58.892 45.455 0.00 0.00 0.00 2.75
1077 1084 3.133003 TCAATCCCTTCCAGTTCGAGATC 59.867 47.826 0.00 0.00 0.00 2.75
1078 1085 2.534042 TCCCTTCCAGTTCGAGATCT 57.466 50.000 0.00 0.00 0.00 2.75
1079 1086 2.379972 TCCCTTCCAGTTCGAGATCTC 58.620 52.381 13.05 13.05 0.00 2.75
1089 1096 3.424326 CGAGATCTCGTACGAGTGC 57.576 57.895 36.67 29.26 46.99 4.40
1090 1097 0.042013 CGAGATCTCGTACGAGTGCC 60.042 60.000 36.67 26.90 46.99 5.01
1091 1098 1.301423 GAGATCTCGTACGAGTGCCT 58.699 55.000 36.67 30.06 42.49 4.75
1092 1099 1.262151 GAGATCTCGTACGAGTGCCTC 59.738 57.143 36.67 32.10 42.49 4.70
1742 1749 3.064820 CGGTTATTGCGGCTTGTATTCTT 59.935 43.478 0.00 0.00 0.00 2.52
1755 1762 6.882678 GGCTTGTATTCTTGGGTTTTAGAGTA 59.117 38.462 0.00 0.00 0.00 2.59
1812 1822 1.031571 TGCTCGGAATTGTGGATGGC 61.032 55.000 0.00 0.00 0.00 4.40
1914 1924 5.171339 ACATTGAAACAGAGCTCTGGTAT 57.829 39.130 39.42 27.40 44.43 2.73
1919 1929 6.154203 TGAAACAGAGCTCTGGTATCTATG 57.846 41.667 39.42 18.44 44.43 2.23
1984 1994 4.067896 CCTGTTATCATGATGTGTAGGGC 58.932 47.826 18.72 0.61 0.00 5.19
2024 2034 6.365520 ACCAATTACCTCTGGGAAATGTATC 58.634 40.000 0.00 0.00 37.00 2.24
2073 2083 8.367660 AGTGTTAGATTCAGAATCCTTCACTA 57.632 34.615 26.16 10.99 38.85 2.74
2123 2135 7.602644 TGACTGACATACAATTTAAGTGGTCTC 59.397 37.037 0.00 0.00 0.00 3.36
2134 2146 6.363167 TTTAAGTGGTCTCGGGAGAAATAA 57.637 37.500 0.00 0.00 39.48 1.40
2168 2180 9.462174 TTTCATTCACTTTATGTGCAAAGTAAG 57.538 29.630 1.31 0.83 44.86 2.34
2206 2221 7.768120 TGCAACATGTATATTGTGTGTAGATGA 59.232 33.333 0.00 0.00 32.00 2.92
2257 2272 3.251004 GTGATGGACTCTGGTTTGTGAAC 59.749 47.826 0.00 0.00 34.96 3.18
2264 2279 5.697633 GGACTCTGGTTTGTGAACGTTAATA 59.302 40.000 0.00 0.00 36.61 0.98
2399 2415 7.442969 TCAGTTGAGTTTCTAAAATTAAGGCGA 59.557 33.333 0.00 0.00 0.00 5.54
2415 2431 1.124462 GCGATGACGATGAGTACAGC 58.876 55.000 0.00 0.00 42.66 4.40
2440 2456 3.994392 TCTGGAGCTTTACGTGTTTCATC 59.006 43.478 0.00 0.00 0.00 2.92
2472 2488 9.385902 CTATTTTGTTTATGATACTTGCCGATG 57.614 33.333 0.00 0.00 0.00 3.84
2572 2588 9.737427 CTTGTATGAAATCGATACTACAGACTT 57.263 33.333 0.00 0.00 0.00 3.01
2625 2641 5.882557 CACTTTCCTGGTCTAGCAAATGTAT 59.117 40.000 0.00 0.00 0.00 2.29
2626 2642 7.047891 CACTTTCCTGGTCTAGCAAATGTATA 58.952 38.462 0.00 0.00 0.00 1.47
2627 2643 7.011482 CACTTTCCTGGTCTAGCAAATGTATAC 59.989 40.741 0.00 0.00 0.00 1.47
2628 2644 6.808321 TTCCTGGTCTAGCAAATGTATACT 57.192 37.500 4.17 0.00 0.00 2.12
2629 2645 6.406692 TCCTGGTCTAGCAAATGTATACTC 57.593 41.667 4.17 0.00 0.00 2.59
2630 2646 5.304614 TCCTGGTCTAGCAAATGTATACTCC 59.695 44.000 4.17 0.00 0.00 3.85
2631 2647 5.511545 CCTGGTCTAGCAAATGTATACTCCC 60.512 48.000 4.17 0.00 0.00 4.30
2632 2648 5.216622 TGGTCTAGCAAATGTATACTCCCT 58.783 41.667 4.17 0.00 0.00 4.20
2633 2649 5.304614 TGGTCTAGCAAATGTATACTCCCTC 59.695 44.000 4.17 0.00 0.00 4.30
2634 2650 5.279556 GGTCTAGCAAATGTATACTCCCTCC 60.280 48.000 4.17 0.00 0.00 4.30
2635 2651 3.753294 AGCAAATGTATACTCCCTCCG 57.247 47.619 4.17 0.00 0.00 4.63
2636 2652 3.039011 AGCAAATGTATACTCCCTCCGT 58.961 45.455 4.17 0.00 0.00 4.69
2637 2653 3.069729 AGCAAATGTATACTCCCTCCGTC 59.930 47.826 4.17 0.00 0.00 4.79
2638 2654 3.802675 GCAAATGTATACTCCCTCCGTCC 60.803 52.174 4.17 0.00 0.00 4.79
2639 2655 2.305858 ATGTATACTCCCTCCGTCCC 57.694 55.000 4.17 0.00 0.00 4.46
2640 2656 0.928505 TGTATACTCCCTCCGTCCCA 59.071 55.000 4.17 0.00 0.00 4.37
2641 2657 1.288633 TGTATACTCCCTCCGTCCCAA 59.711 52.381 4.17 0.00 0.00 4.12
2642 2658 2.292389 TGTATACTCCCTCCGTCCCAAA 60.292 50.000 4.17 0.00 0.00 3.28
2643 2659 2.191981 ATACTCCCTCCGTCCCAAAT 57.808 50.000 0.00 0.00 0.00 2.32
2644 2660 1.961133 TACTCCCTCCGTCCCAAATT 58.039 50.000 0.00 0.00 0.00 1.82
2645 2661 1.961133 ACTCCCTCCGTCCCAAATTA 58.039 50.000 0.00 0.00 0.00 1.40
2646 2662 2.271777 ACTCCCTCCGTCCCAAATTAA 58.728 47.619 0.00 0.00 0.00 1.40
2647 2663 2.238898 ACTCCCTCCGTCCCAAATTAAG 59.761 50.000 0.00 0.00 0.00 1.85
2648 2664 2.238898 CTCCCTCCGTCCCAAATTAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2649 2665 2.026636 TCCCTCCGTCCCAAATTAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2650 2666 2.026636 CCCTCCGTCCCAAATTAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2651 2667 3.007635 CCTCCGTCCCAAATTAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2652 2668 3.307480 CCTCCGTCCCAAATTAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
2653 2669 3.933332 CTCCGTCCCAAATTAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2654 2670 3.325425 TCCGTCCCAAATTAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2655 2671 4.069304 CCGTCCCAAATTAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2656 2672 4.083484 CCGTCCCAAATTAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2657 2673 4.755123 CGTCCCAAATTAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2658 2674 5.238650 CGTCCCAAATTAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2659 2675 6.238648 CGTCCCAAATTAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2660 2676 6.918022 GTCCCAAATTAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2661 2677 6.605594 TCCCAAATTAAGTGACTCAACTTTGT 59.394 34.615 8.71 0.00 40.77 2.83
2662 2678 7.776030 TCCCAAATTAAGTGACTCAACTTTGTA 59.224 33.333 8.71 0.00 40.77 2.41
2663 2679 7.860872 CCCAAATTAAGTGACTCAACTTTGTAC 59.139 37.037 8.71 0.00 40.77 2.90
2664 2680 8.621286 CCAAATTAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2669 2685 9.880157 TTAAGTGACTCAACTTTGTACTAACTT 57.120 29.630 0.00 0.00 40.77 2.66
2670 2686 8.788325 AAGTGACTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
2671 2687 9.880157 AAGTGACTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
2672 2688 9.530633 AGTGACTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
2673 2689 9.310716 GTGACTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
2697 2713 9.310716 AGTACAAAGTTAGTACAAAGTTGAGTC 57.689 33.333 6.30 0.00 43.24 3.36
2698 2714 9.090692 GTACAAAGTTAGTACAAAGTTGAGTCA 57.909 33.333 0.00 0.00 41.08 3.41
2699 2715 7.971455 ACAAAGTTAGTACAAAGTTGAGTCAC 58.029 34.615 0.00 0.00 0.00 3.67
2700 2716 7.822822 ACAAAGTTAGTACAAAGTTGAGTCACT 59.177 33.333 0.00 0.00 0.00 3.41
2701 2717 8.665685 CAAAGTTAGTACAAAGTTGAGTCACTT 58.334 33.333 0.00 0.00 38.74 3.16
2702 2718 9.880157 AAAGTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 0.00 0.00 35.87 2.24
2708 2724 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
2709 2725 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
2710 2726 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
2711 2727 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2712 2728 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2713 2729 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
2714 2730 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
2715 2731 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
2716 2732 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2717 2733 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2718 2734 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2719 2735 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2749 2765 0.870393 GGCATGTGCATCTACATCCG 59.130 55.000 7.36 0.00 44.36 4.18
2797 2813 7.390718 ACATCTGATTAGTTCCCTGTGTAAAAC 59.609 37.037 0.00 0.00 0.00 2.43
2841 2857 5.059404 ACGGGAATTCATGTTCATGTTTC 57.941 39.130 7.93 14.03 0.00 2.78
2843 2859 5.010516 ACGGGAATTCATGTTCATGTTTCAA 59.989 36.000 20.51 8.97 0.00 2.69
3559 3589 5.987098 AGGTTACTGATCTACGACTCTGTA 58.013 41.667 0.00 0.00 0.00 2.74
3647 3677 1.288127 CAGTTGGGCAGCTGCTTTC 59.712 57.895 35.82 24.87 41.70 2.62
3735 3767 1.765314 CCTGATCCCTCAAAGATCCGT 59.235 52.381 0.00 0.00 39.56 4.69
3795 3827 1.638070 TGTTCATACATGGGGCAGGAA 59.362 47.619 0.00 0.00 0.00 3.36
3834 3866 6.290956 GCTACTACGTGAACAATGATTACGAC 60.291 42.308 14.00 0.00 38.08 4.34
4025 4057 2.034066 CGAAGGGAGCAAGGCCAA 59.966 61.111 5.01 0.00 0.00 4.52
4027 4059 2.282462 AAGGGAGCAAGGCCAACG 60.282 61.111 5.01 0.00 0.00 4.10
4121 4153 1.438469 TATCAGATGGCTTCCTGGGG 58.562 55.000 0.00 0.00 0.00 4.96
4347 4387 3.371285 GCAAGGGTTCGTTAGATGACTTC 59.629 47.826 0.00 0.00 0.00 3.01
4354 4394 2.029739 TCGTTAGATGACTTCGGTTGCA 60.030 45.455 0.00 0.00 0.00 4.08
4361 4401 4.943705 AGATGACTTCGGTTGCACATAATT 59.056 37.500 0.00 0.00 0.00 1.40
4426 4466 1.340991 CCCCCTTTCCATTGATCACGT 60.341 52.381 0.00 0.00 0.00 4.49
4449 4516 0.614979 GGAAAAGGGGAAGGAAGGGC 60.615 60.000 0.00 0.00 0.00 5.19
4463 4530 2.771763 AAGGGCAGCGAGTTCGAGTG 62.772 60.000 5.60 3.09 43.02 3.51
4483 4550 3.399181 CCCGCTGGTAAGGGCTCA 61.399 66.667 0.00 0.00 41.34 4.26
4485 4552 2.660064 CCGCTGGTAAGGGCTCACT 61.660 63.158 0.00 0.00 35.07 3.41
4501 4575 1.301244 ACTGTTGAGACGCCTGCTG 60.301 57.895 0.00 0.00 0.00 4.41
4505 4579 0.038159 GTTGAGACGCCTGCTGTAGT 60.038 55.000 0.00 0.00 0.00 2.73
4523 4597 6.513806 TGTAGTGCAAAATGTCATTAGCAT 57.486 33.333 21.47 15.13 36.35 3.79
4576 4662 7.706179 ACATGAAGTAAGGTGAAACAAAACATG 59.294 33.333 0.00 0.00 39.98 3.21
4583 4669 4.887071 AGGTGAAACAAAACATGCACTAGA 59.113 37.500 0.00 0.00 39.98 2.43
4584 4670 4.976116 GGTGAAACAAAACATGCACTAGAC 59.024 41.667 0.00 0.00 39.98 2.59
4585 4671 5.449862 GGTGAAACAAAACATGCACTAGACA 60.450 40.000 0.00 0.00 39.98 3.41
4586 4672 6.208644 GTGAAACAAAACATGCACTAGACAT 58.791 36.000 0.00 0.00 36.32 3.06
4587 4673 7.359595 GTGAAACAAAACATGCACTAGACATA 58.640 34.615 0.00 0.00 36.32 2.29
4588 4674 7.535258 GTGAAACAAAACATGCACTAGACATAG 59.465 37.037 0.00 0.00 36.32 2.23
4589 4675 6.500684 AACAAAACATGCACTAGACATAGG 57.499 37.500 0.00 0.00 32.90 2.57
4590 4676 5.560724 ACAAAACATGCACTAGACATAGGT 58.439 37.500 0.00 0.00 32.90 3.08
4591 4677 6.003950 ACAAAACATGCACTAGACATAGGTT 58.996 36.000 0.00 0.00 32.90 3.50
4592 4678 6.149474 ACAAAACATGCACTAGACATAGGTTC 59.851 38.462 0.00 0.00 32.90 3.62
4593 4679 4.408182 ACATGCACTAGACATAGGTTCC 57.592 45.455 0.00 0.00 32.90 3.62
4594 4680 4.033709 ACATGCACTAGACATAGGTTCCT 58.966 43.478 0.00 0.00 32.90 3.36
4595 4681 4.141846 ACATGCACTAGACATAGGTTCCTG 60.142 45.833 0.00 0.00 32.90 3.86
4596 4682 3.441101 TGCACTAGACATAGGTTCCTGT 58.559 45.455 0.00 0.00 32.90 4.00
4597 4683 3.838317 TGCACTAGACATAGGTTCCTGTT 59.162 43.478 0.00 0.00 32.90 3.16
4598 4684 4.286032 TGCACTAGACATAGGTTCCTGTTT 59.714 41.667 0.00 0.00 32.90 2.83
4599 4685 5.221843 TGCACTAGACATAGGTTCCTGTTTT 60.222 40.000 0.00 0.00 32.90 2.43
4600 4686 5.705905 GCACTAGACATAGGTTCCTGTTTTT 59.294 40.000 0.00 0.00 32.90 1.94
4712 4798 3.458163 GATCTCCACGTCCGCCCA 61.458 66.667 0.00 0.00 0.00 5.36
4732 4818 5.728471 CCCATCACGCTCTATATTCTTGAT 58.272 41.667 0.00 0.00 0.00 2.57
4758 4844 2.990479 CAAGCGAGGGGGCTACTT 59.010 61.111 0.00 0.00 43.93 2.24
4855 5023 3.160872 GGCACCTAGTTGAGCTTCC 57.839 57.895 0.00 0.00 0.00 3.46
4861 5029 0.741221 CTAGTTGAGCTTCCCGTGGC 60.741 60.000 0.00 0.00 0.00 5.01
4895 5063 0.176219 AAGTGTCGTCAACCGTTGGA 59.824 50.000 11.35 0.00 37.94 3.53
4896 5064 0.176219 AGTGTCGTCAACCGTTGGAA 59.824 50.000 11.35 0.00 37.94 3.53
4897 5065 1.008329 GTGTCGTCAACCGTTGGAAA 58.992 50.000 11.35 0.00 37.94 3.13
4898 5066 1.397692 GTGTCGTCAACCGTTGGAAAA 59.602 47.619 11.35 0.00 37.94 2.29
4899 5067 2.082231 TGTCGTCAACCGTTGGAAAAA 58.918 42.857 11.35 0.00 37.94 1.94
4961 5129 0.693049 AGCCAGAACCAAATCGTCCT 59.307 50.000 0.00 0.00 0.00 3.85
4963 5131 1.610624 GCCAGAACCAAATCGTCCTCA 60.611 52.381 0.00 0.00 0.00 3.86
4984 5152 3.002246 CACAAAGACGCAAAGCAAGTAGA 59.998 43.478 0.00 0.00 0.00 2.59
4995 5164 6.032775 CGCAAAGCAAGTAGAATGTTGTAATG 59.967 38.462 0.00 0.00 0.00 1.90
5000 5169 6.942576 AGCAAGTAGAATGTTGTAATGGTCTT 59.057 34.615 0.00 0.00 0.00 3.01
5020 5189 6.092807 GGTCTTCTCATGTTGATTGTAGAACC 59.907 42.308 0.00 0.00 0.00 3.62
5026 5195 5.937540 TCATGTTGATTGTAGAACCGACATT 59.062 36.000 0.00 0.00 32.86 2.71
5027 5196 7.100409 TCATGTTGATTGTAGAACCGACATTA 58.900 34.615 0.00 0.00 32.86 1.90
5028 5197 6.715344 TGTTGATTGTAGAACCGACATTAC 57.285 37.500 0.00 0.00 0.00 1.89
5029 5198 6.224584 TGTTGATTGTAGAACCGACATTACA 58.775 36.000 0.00 0.00 0.00 2.41
5030 5199 6.706716 TGTTGATTGTAGAACCGACATTACAA 59.293 34.615 0.00 0.00 39.49 2.41
5031 5200 7.389330 TGTTGATTGTAGAACCGACATTACAAT 59.611 33.333 8.07 8.07 44.80 2.71
5032 5201 8.875803 GTTGATTGTAGAACCGACATTACAATA 58.124 33.333 8.26 0.00 43.18 1.90
5033 5202 8.415192 TGATTGTAGAACCGACATTACAATAC 57.585 34.615 8.26 4.66 43.18 1.89
5034 5203 8.035984 TGATTGTAGAACCGACATTACAATACA 58.964 33.333 8.26 6.52 43.18 2.29
5035 5204 7.821595 TTGTAGAACCGACATTACAATACAG 57.178 36.000 0.00 0.00 32.71 2.74
5036 5205 6.927416 TGTAGAACCGACATTACAATACAGT 58.073 36.000 0.00 0.00 0.00 3.55
5037 5206 8.054152 TGTAGAACCGACATTACAATACAGTA 57.946 34.615 0.00 0.00 0.00 2.74
5038 5207 8.522003 TGTAGAACCGACATTACAATACAGTAA 58.478 33.333 0.00 0.00 38.25 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.862585 GTTCGCAATTTGAAAAATTGTTCTTAT 57.137 25.926 20.63 0.83 39.25 1.73
27 28 9.092876 AGTTCGCAATTTGAAAAATTGTTCTTA 57.907 25.926 20.63 0.00 39.25 2.10
28 29 7.973601 AGTTCGCAATTTGAAAAATTGTTCTT 58.026 26.923 20.63 0.00 39.25 2.52
29 30 7.538303 AGTTCGCAATTTGAAAAATTGTTCT 57.462 28.000 20.63 13.29 39.25 3.01
30 31 8.599876 AAAGTTCGCAATTTGAAAAATTGTTC 57.400 26.923 20.63 1.01 39.25 3.18
32 33 9.862585 GATAAAGTTCGCAATTTGAAAAATTGT 57.137 25.926 20.63 7.23 39.25 2.71
36 37 8.061268 GCAAGATAAAGTTCGCAATTTGAAAAA 58.939 29.630 0.00 0.00 0.00 1.94
37 38 7.223582 TGCAAGATAAAGTTCGCAATTTGAAAA 59.776 29.630 0.00 0.00 0.00 2.29
38 39 6.699204 TGCAAGATAAAGTTCGCAATTTGAAA 59.301 30.769 0.00 0.00 0.00 2.69
39 40 6.212235 TGCAAGATAAAGTTCGCAATTTGAA 58.788 32.000 0.00 0.00 0.00 2.69
40 41 5.767269 TGCAAGATAAAGTTCGCAATTTGA 58.233 33.333 0.00 0.00 0.00 2.69
41 42 6.450845 TTGCAAGATAAAGTTCGCAATTTG 57.549 33.333 0.00 0.00 34.66 2.32
42 43 7.344441 GTTTTGCAAGATAAAGTTCGCAATTT 58.656 30.769 0.00 0.00 38.96 1.82
43 44 6.345723 CGTTTTGCAAGATAAAGTTCGCAATT 60.346 34.615 0.00 0.00 38.96 2.32
44 45 5.116983 CGTTTTGCAAGATAAAGTTCGCAAT 59.883 36.000 0.00 0.00 38.96 3.56
45 46 4.439449 CGTTTTGCAAGATAAAGTTCGCAA 59.561 37.500 0.00 0.00 37.57 4.85
46 47 3.971871 CGTTTTGCAAGATAAAGTTCGCA 59.028 39.130 0.00 0.00 0.00 5.10
47 48 3.972502 ACGTTTTGCAAGATAAAGTTCGC 59.027 39.130 0.00 0.00 0.00 4.70
48 49 5.201910 TCACGTTTTGCAAGATAAAGTTCG 58.798 37.500 0.00 0.00 0.00 3.95
49 50 6.343924 CGTTCACGTTTTGCAAGATAAAGTTC 60.344 38.462 0.00 0.00 34.11 3.01
50 51 5.454232 CGTTCACGTTTTGCAAGATAAAGTT 59.546 36.000 0.00 0.00 34.11 2.66
51 52 4.967575 CGTTCACGTTTTGCAAGATAAAGT 59.032 37.500 0.00 0.00 34.11 2.66
52 53 5.465857 CGTTCACGTTTTGCAAGATAAAG 57.534 39.130 0.00 0.00 34.11 1.85
67 68 9.596204 GTTTGTAAATTTTAGAAAACGTTCACG 57.404 29.630 11.69 0.00 46.33 4.35
135 136 9.798885 CGTTTTCAAAATGTTTGTAAAGTTGAA 57.201 25.926 5.95 0.00 33.10 2.69
136 137 7.952637 GCGTTTTCAAAATGTTTGTAAAGTTGA 59.047 29.630 4.02 0.00 0.00 3.18
137 138 7.742089 TGCGTTTTCAAAATGTTTGTAAAGTTG 59.258 29.630 4.02 2.51 0.00 3.16
138 139 7.797819 TGCGTTTTCAAAATGTTTGTAAAGTT 58.202 26.923 4.02 0.00 0.00 2.66
139 140 7.352719 TGCGTTTTCAAAATGTTTGTAAAGT 57.647 28.000 4.02 0.00 0.00 2.66
140 141 8.647035 TTTGCGTTTTCAAAATGTTTGTAAAG 57.353 26.923 4.02 4.06 33.47 1.85
141 142 9.445786 TTTTTGCGTTTTCAAAATGTTTGTAAA 57.554 22.222 4.02 1.84 43.08 2.01
142 143 9.612620 ATTTTTGCGTTTTCAAAATGTTTGTAA 57.387 22.222 4.02 0.00 43.08 2.41
143 144 9.612620 AATTTTTGCGTTTTCAAAATGTTTGTA 57.387 22.222 4.02 0.00 43.08 2.41
144 145 8.512800 AATTTTTGCGTTTTCAAAATGTTTGT 57.487 23.077 4.02 0.00 43.08 2.83
145 146 9.236216 CAAATTTTTGCGTTTTCAAAATGTTTG 57.764 25.926 16.45 16.45 43.08 2.93
177 178 9.455847 CGTCTTTTCAGAAAATCTTCTCAATTT 57.544 29.630 8.81 0.00 40.05 1.82
178 179 8.840321 TCGTCTTTTCAGAAAATCTTCTCAATT 58.160 29.630 8.81 0.00 40.05 2.32
179 180 8.383318 TCGTCTTTTCAGAAAATCTTCTCAAT 57.617 30.769 8.81 0.00 40.05 2.57
180 181 7.786178 TCGTCTTTTCAGAAAATCTTCTCAA 57.214 32.000 8.81 0.00 40.05 3.02
181 182 7.279981 TGTTCGTCTTTTCAGAAAATCTTCTCA 59.720 33.333 8.81 3.45 40.05 3.27
182 183 7.630924 TGTTCGTCTTTTCAGAAAATCTTCTC 58.369 34.615 8.81 1.19 40.05 2.87
183 184 7.553881 TGTTCGTCTTTTCAGAAAATCTTCT 57.446 32.000 8.81 0.00 42.96 2.85
184 185 8.788409 ATTGTTCGTCTTTTCAGAAAATCTTC 57.212 30.769 8.81 0.49 0.00 2.87
185 186 9.586435 AAATTGTTCGTCTTTTCAGAAAATCTT 57.414 25.926 8.81 0.00 0.00 2.40
186 187 9.586435 AAAATTGTTCGTCTTTTCAGAAAATCT 57.414 25.926 8.81 0.00 0.00 2.40
187 188 9.835315 GAAAATTGTTCGTCTTTTCAGAAAATC 57.165 29.630 8.81 5.14 38.28 2.17
188 189 8.817100 GGAAAATTGTTCGTCTTTTCAGAAAAT 58.183 29.630 8.81 0.00 39.50 1.82
189 190 8.032451 AGGAAAATTGTTCGTCTTTTCAGAAAA 58.968 29.630 8.09 8.09 39.50 2.29
190 191 7.543756 AGGAAAATTGTTCGTCTTTTCAGAAA 58.456 30.769 8.66 0.00 39.50 2.52
191 192 7.095695 AGGAAAATTGTTCGTCTTTTCAGAA 57.904 32.000 8.66 0.00 39.50 3.02
192 193 6.693315 AGGAAAATTGTTCGTCTTTTCAGA 57.307 33.333 8.66 0.00 39.50 3.27
193 194 9.463443 AATTAGGAAAATTGTTCGTCTTTTCAG 57.537 29.630 8.66 0.00 39.50 3.02
194 195 9.810545 AAATTAGGAAAATTGTTCGTCTTTTCA 57.189 25.926 8.66 0.00 39.50 2.69
219 220 8.749841 TCGTGTTTTCAGAAAATCTTCAAAAA 57.250 26.923 11.54 0.00 33.64 1.94
220 221 8.749841 TTCGTGTTTTCAGAAAATCTTCAAAA 57.250 26.923 11.54 1.67 33.64 2.44
221 222 8.925161 ATTCGTGTTTTCAGAAAATCTTCAAA 57.075 26.923 11.54 3.39 33.64 2.69
222 223 8.925161 AATTCGTGTTTTCAGAAAATCTTCAA 57.075 26.923 11.54 2.85 33.64 2.69
223 224 8.925161 AAATTCGTGTTTTCAGAAAATCTTCA 57.075 26.923 11.54 2.45 33.64 3.02
382 383 9.645059 CTGTTTCTTTCTTCTTTTCTTTCCTTT 57.355 29.630 0.00 0.00 0.00 3.11
383 384 9.025041 TCTGTTTCTTTCTTCTTTTCTTTCCTT 57.975 29.630 0.00 0.00 0.00 3.36
384 385 8.581253 TCTGTTTCTTTCTTCTTTTCTTTCCT 57.419 30.769 0.00 0.00 0.00 3.36
385 386 9.639601 TTTCTGTTTCTTTCTTCTTTTCTTTCC 57.360 29.630 0.00 0.00 0.00 3.13
432 433 9.478768 TCTTCCGTTTTTACTTTTTGTTTCTTT 57.521 25.926 0.00 0.00 0.00 2.52
433 434 9.478768 TTCTTCCGTTTTTACTTTTTGTTTCTT 57.521 25.926 0.00 0.00 0.00 2.52
434 435 9.478768 TTTCTTCCGTTTTTACTTTTTGTTTCT 57.521 25.926 0.00 0.00 0.00 2.52
459 460 5.822519 GGCTGATTTTCTTTTGGGTCTTTTT 59.177 36.000 0.00 0.00 0.00 1.94
460 461 5.104569 TGGCTGATTTTCTTTTGGGTCTTTT 60.105 36.000 0.00 0.00 0.00 2.27
461 462 4.408596 TGGCTGATTTTCTTTTGGGTCTTT 59.591 37.500 0.00 0.00 0.00 2.52
462 463 3.966665 TGGCTGATTTTCTTTTGGGTCTT 59.033 39.130 0.00 0.00 0.00 3.01
463 464 3.321968 GTGGCTGATTTTCTTTTGGGTCT 59.678 43.478 0.00 0.00 0.00 3.85
464 465 3.069443 TGTGGCTGATTTTCTTTTGGGTC 59.931 43.478 0.00 0.00 0.00 4.46
465 466 3.037549 TGTGGCTGATTTTCTTTTGGGT 58.962 40.909 0.00 0.00 0.00 4.51
466 467 3.749665 TGTGGCTGATTTTCTTTTGGG 57.250 42.857 0.00 0.00 0.00 4.12
467 468 6.434018 TTTTTGTGGCTGATTTTCTTTTGG 57.566 33.333 0.00 0.00 0.00 3.28
500 501 4.219919 TCCCCAAATCGGTTTCTCTTTTT 58.780 39.130 0.00 0.00 0.00 1.94
501 502 3.839778 TCCCCAAATCGGTTTCTCTTTT 58.160 40.909 0.00 0.00 0.00 2.27
502 503 3.518992 TCCCCAAATCGGTTTCTCTTT 57.481 42.857 0.00 0.00 0.00 2.52
503 504 3.154710 GTTCCCCAAATCGGTTTCTCTT 58.845 45.455 0.00 0.00 0.00 2.85
504 505 2.554564 GGTTCCCCAAATCGGTTTCTCT 60.555 50.000 0.00 0.00 0.00 3.10
505 506 1.816835 GGTTCCCCAAATCGGTTTCTC 59.183 52.381 0.00 0.00 0.00 2.87
506 507 1.427753 AGGTTCCCCAAATCGGTTTCT 59.572 47.619 0.00 0.00 0.00 2.52
507 508 1.919240 AGGTTCCCCAAATCGGTTTC 58.081 50.000 0.00 0.00 0.00 2.78
508 509 2.158370 AGAAGGTTCCCCAAATCGGTTT 60.158 45.455 0.00 0.00 0.00 3.27
509 510 1.427753 AGAAGGTTCCCCAAATCGGTT 59.572 47.619 0.00 0.00 0.00 4.44
510 511 1.073098 AGAAGGTTCCCCAAATCGGT 58.927 50.000 0.00 0.00 0.00 4.69
511 512 2.092323 GAAGAAGGTTCCCCAAATCGG 58.908 52.381 0.00 0.00 0.00 4.18
512 513 2.092323 GGAAGAAGGTTCCCCAAATCG 58.908 52.381 0.00 0.00 32.48 3.34
520 521 1.611977 CGGTTTTGGGAAGAAGGTTCC 59.388 52.381 0.00 0.00 37.86 3.62
521 522 1.611977 CCGGTTTTGGGAAGAAGGTTC 59.388 52.381 0.00 0.00 0.00 3.62
522 523 1.699730 CCGGTTTTGGGAAGAAGGTT 58.300 50.000 0.00 0.00 0.00 3.50
523 524 3.432262 CCGGTTTTGGGAAGAAGGT 57.568 52.632 0.00 0.00 0.00 3.50
532 533 1.404843 TGGTTTTCTCCCGGTTTTGG 58.595 50.000 0.00 0.00 0.00 3.28
533 534 2.029380 GGATGGTTTTCTCCCGGTTTTG 60.029 50.000 0.00 0.00 0.00 2.44
534 535 2.244695 GGATGGTTTTCTCCCGGTTTT 58.755 47.619 0.00 0.00 0.00 2.43
535 536 1.884928 CGGATGGTTTTCTCCCGGTTT 60.885 52.381 0.00 0.00 36.81 3.27
536 537 0.322187 CGGATGGTTTTCTCCCGGTT 60.322 55.000 0.00 0.00 36.81 4.44
537 538 1.298667 CGGATGGTTTTCTCCCGGT 59.701 57.895 0.00 0.00 36.81 5.28
538 539 0.743345 GACGGATGGTTTTCTCCCGG 60.743 60.000 0.00 0.00 43.98 5.73
539 540 0.743345 GGACGGATGGTTTTCTCCCG 60.743 60.000 0.00 0.00 45.09 5.14
540 541 0.743345 CGGACGGATGGTTTTCTCCC 60.743 60.000 0.00 0.00 0.00 4.30
541 542 0.036671 ACGGACGGATGGTTTTCTCC 60.037 55.000 0.00 0.00 0.00 3.71
542 543 2.660189 TACGGACGGATGGTTTTCTC 57.340 50.000 0.00 0.00 0.00 2.87
543 544 3.622166 ATTACGGACGGATGGTTTTCT 57.378 42.857 0.00 0.00 0.00 2.52
544 545 3.246936 GCTATTACGGACGGATGGTTTTC 59.753 47.826 0.00 0.00 0.00 2.29
545 546 3.118519 AGCTATTACGGACGGATGGTTTT 60.119 43.478 0.00 0.00 0.00 2.43
546 547 2.433239 AGCTATTACGGACGGATGGTTT 59.567 45.455 0.00 0.00 0.00 3.27
547 548 2.037144 AGCTATTACGGACGGATGGTT 58.963 47.619 0.00 0.00 0.00 3.67
548 549 1.700955 AGCTATTACGGACGGATGGT 58.299 50.000 0.00 0.00 0.00 3.55
549 550 2.555325 TGTAGCTATTACGGACGGATGG 59.445 50.000 0.00 0.00 34.87 3.51
550 551 3.252701 AGTGTAGCTATTACGGACGGATG 59.747 47.826 0.00 0.00 34.87 3.51
551 552 3.484407 AGTGTAGCTATTACGGACGGAT 58.516 45.455 0.00 0.00 34.87 4.18
552 553 2.923121 AGTGTAGCTATTACGGACGGA 58.077 47.619 0.00 0.00 34.87 4.69
553 554 4.531332 GTTAGTGTAGCTATTACGGACGG 58.469 47.826 0.00 0.00 34.87 4.79
554 555 4.035558 TGGTTAGTGTAGCTATTACGGACG 59.964 45.833 0.00 0.00 34.87 4.79
555 556 5.067023 AGTGGTTAGTGTAGCTATTACGGAC 59.933 44.000 0.00 4.46 34.87 4.79
556 557 5.195940 AGTGGTTAGTGTAGCTATTACGGA 58.804 41.667 0.00 0.00 34.87 4.69
557 558 5.511234 AGTGGTTAGTGTAGCTATTACGG 57.489 43.478 0.00 0.00 34.87 4.02
558 559 7.475015 TGTTAGTGGTTAGTGTAGCTATTACG 58.525 38.462 0.00 0.00 34.87 3.18
559 560 7.919621 CCTGTTAGTGGTTAGTGTAGCTATTAC 59.080 40.741 0.00 0.00 0.00 1.89
560 561 7.417116 GCCTGTTAGTGGTTAGTGTAGCTATTA 60.417 40.741 0.00 0.00 0.00 0.98
561 562 6.629739 GCCTGTTAGTGGTTAGTGTAGCTATT 60.630 42.308 0.00 0.00 0.00 1.73
562 563 5.163437 GCCTGTTAGTGGTTAGTGTAGCTAT 60.163 44.000 0.00 0.00 0.00 2.97
563 564 4.159135 GCCTGTTAGTGGTTAGTGTAGCTA 59.841 45.833 0.00 0.00 0.00 3.32
564 565 3.056035 GCCTGTTAGTGGTTAGTGTAGCT 60.056 47.826 0.00 0.00 0.00 3.32
565 566 3.259902 GCCTGTTAGTGGTTAGTGTAGC 58.740 50.000 0.00 0.00 0.00 3.58
566 567 3.675228 CGGCCTGTTAGTGGTTAGTGTAG 60.675 52.174 0.00 0.00 0.00 2.74
567 568 2.231964 CGGCCTGTTAGTGGTTAGTGTA 59.768 50.000 0.00 0.00 0.00 2.90
568 569 1.001633 CGGCCTGTTAGTGGTTAGTGT 59.998 52.381 0.00 0.00 0.00 3.55
569 570 1.674817 CCGGCCTGTTAGTGGTTAGTG 60.675 57.143 0.00 0.00 0.00 2.74
570 571 0.611714 CCGGCCTGTTAGTGGTTAGT 59.388 55.000 0.00 0.00 0.00 2.24
571 572 0.743345 GCCGGCCTGTTAGTGGTTAG 60.743 60.000 18.11 0.00 0.00 2.34
572 573 1.297364 GCCGGCCTGTTAGTGGTTA 59.703 57.895 18.11 0.00 0.00 2.85
573 574 2.033602 GCCGGCCTGTTAGTGGTT 59.966 61.111 18.11 0.00 0.00 3.67
574 575 4.029809 GGCCGGCCTGTTAGTGGT 62.030 66.667 38.76 0.00 0.00 4.16
575 576 3.717294 AGGCCGGCCTGTTAGTGG 61.717 66.667 46.71 0.00 46.22 4.00
586 587 4.685026 CGACGCGATCTAGGCCGG 62.685 72.222 15.93 0.00 0.00 6.13
588 589 2.515947 CTAGCGACGCGATCTAGGCC 62.516 65.000 15.93 0.00 0.00 5.19
589 590 1.154376 CTAGCGACGCGATCTAGGC 60.154 63.158 15.93 6.40 0.00 3.93
590 591 1.154376 GCTAGCGACGCGATCTAGG 60.154 63.158 15.93 0.00 32.54 3.02
591 592 0.179235 GAGCTAGCGACGCGATCTAG 60.179 60.000 15.93 19.38 34.45 2.43
592 593 1.860759 GAGCTAGCGACGCGATCTA 59.139 57.895 15.93 9.74 0.00 1.98
593 594 2.634777 GAGCTAGCGACGCGATCT 59.365 61.111 15.93 10.37 0.00 2.75
594 595 2.793353 CGAGCTAGCGACGCGATC 60.793 66.667 15.93 8.54 0.00 3.69
595 596 3.574445 ACGAGCTAGCGACGCGAT 61.574 61.111 27.45 12.81 34.83 4.58
596 597 4.516135 CACGAGCTAGCGACGCGA 62.516 66.667 27.45 8.57 34.83 5.87
597 598 3.994946 TTCACGAGCTAGCGACGCG 62.995 63.158 27.45 22.16 34.83 6.01
598 599 2.202440 TTCACGAGCTAGCGACGC 60.202 61.111 27.45 13.03 34.83 5.19
599 600 1.868251 GGTTCACGAGCTAGCGACG 60.868 63.158 26.47 26.47 34.83 5.12
600 601 0.798771 CAGGTTCACGAGCTAGCGAC 60.799 60.000 9.55 6.98 33.99 5.19
601 602 1.241990 ACAGGTTCACGAGCTAGCGA 61.242 55.000 9.55 0.00 33.99 4.93
602 603 1.073216 CACAGGTTCACGAGCTAGCG 61.073 60.000 9.55 0.00 33.99 4.26
603 604 1.355066 GCACAGGTTCACGAGCTAGC 61.355 60.000 6.62 6.62 33.99 3.42
604 605 1.073216 CGCACAGGTTCACGAGCTAG 61.073 60.000 0.00 0.00 33.99 3.42
605 606 1.080772 CGCACAGGTTCACGAGCTA 60.081 57.895 0.00 0.00 33.99 3.32
606 607 2.356313 CGCACAGGTTCACGAGCT 60.356 61.111 0.00 0.00 36.26 4.09
607 608 1.891060 CTTCGCACAGGTTCACGAGC 61.891 60.000 0.00 0.00 35.74 5.03
608 609 1.891060 GCTTCGCACAGGTTCACGAG 61.891 60.000 0.00 0.00 35.74 4.18
609 610 1.954146 GCTTCGCACAGGTTCACGA 60.954 57.895 0.00 0.00 0.00 4.35
610 611 2.551270 GCTTCGCACAGGTTCACG 59.449 61.111 0.00 0.00 0.00 4.35
611 612 2.617274 GGGCTTCGCACAGGTTCAC 61.617 63.158 0.00 0.00 0.00 3.18
612 613 2.281484 GGGCTTCGCACAGGTTCA 60.281 61.111 0.00 0.00 0.00 3.18
613 614 3.056328 GGGGCTTCGCACAGGTTC 61.056 66.667 0.00 0.00 30.93 3.62
617 618 4.680237 TGTCGGGGCTTCGCACAG 62.680 66.667 0.00 0.00 30.93 3.66
618 619 4.680237 CTGTCGGGGCTTCGCACA 62.680 66.667 0.00 0.00 30.93 4.57
622 623 3.121030 CAAGCTGTCGGGGCTTCG 61.121 66.667 7.29 0.00 46.59 3.79
623 624 2.035442 GTCAAGCTGTCGGGGCTTC 61.035 63.158 7.29 0.00 46.59 3.86
625 626 4.379243 CGTCAAGCTGTCGGGGCT 62.379 66.667 0.00 0.00 42.31 5.19
642 643 1.847818 TCCTATATGACGCACGTTGC 58.152 50.000 0.00 0.00 40.69 4.17
643 644 3.428870 GGAATCCTATATGACGCACGTTG 59.571 47.826 0.00 0.00 0.00 4.10
644 645 3.554337 GGGAATCCTATATGACGCACGTT 60.554 47.826 0.00 0.00 0.00 3.99
645 646 2.029290 GGGAATCCTATATGACGCACGT 60.029 50.000 0.00 0.00 0.00 4.49
646 647 2.607187 GGGAATCCTATATGACGCACG 58.393 52.381 0.00 0.00 0.00 5.34
647 648 2.567615 AGGGGAATCCTATATGACGCAC 59.432 50.000 0.00 0.00 45.98 5.34
648 649 2.567169 CAGGGGAATCCTATATGACGCA 59.433 50.000 0.00 0.00 46.12 5.24
649 650 2.567615 ACAGGGGAATCCTATATGACGC 59.432 50.000 0.00 0.00 46.12 5.19
650 651 4.891992 AACAGGGGAATCCTATATGACG 57.108 45.455 0.00 0.00 46.12 4.35
695 696 4.321974 GCTATGGCCTGTTAGCAACTTTTT 60.322 41.667 20.92 0.00 40.42 1.94
696 697 3.193479 GCTATGGCCTGTTAGCAACTTTT 59.807 43.478 20.92 0.00 40.42 2.27
697 698 2.755103 GCTATGGCCTGTTAGCAACTTT 59.245 45.455 20.92 0.00 40.42 2.66
698 699 2.025887 AGCTATGGCCTGTTAGCAACTT 60.026 45.455 24.99 9.72 42.62 2.66
699 700 1.561542 AGCTATGGCCTGTTAGCAACT 59.438 47.619 24.99 9.98 42.62 3.16
700 701 1.943340 GAGCTATGGCCTGTTAGCAAC 59.057 52.381 24.99 17.70 42.62 4.17
701 702 1.839994 AGAGCTATGGCCTGTTAGCAA 59.160 47.619 24.99 0.00 42.62 3.91
702 703 1.139654 CAGAGCTATGGCCTGTTAGCA 59.860 52.381 24.99 0.00 42.62 3.49
703 704 1.139853 ACAGAGCTATGGCCTGTTAGC 59.860 52.381 13.85 19.23 42.72 3.09
704 705 3.550437 AACAGAGCTATGGCCTGTTAG 57.450 47.619 25.42 3.90 46.99 2.34
705 706 4.030913 AGTAACAGAGCTATGGCCTGTTA 58.969 43.478 26.30 26.30 46.99 2.41
707 708 2.169352 CAGTAACAGAGCTATGGCCTGT 59.831 50.000 13.85 15.93 45.12 4.00
708 709 2.169352 ACAGTAACAGAGCTATGGCCTG 59.831 50.000 13.85 15.99 40.25 4.85
709 710 2.472029 ACAGTAACAGAGCTATGGCCT 58.528 47.619 13.85 2.12 39.73 5.19
710 711 2.990066 ACAGTAACAGAGCTATGGCC 57.010 50.000 13.85 0.00 39.73 5.36
711 712 4.612943 GACTACAGTAACAGAGCTATGGC 58.387 47.826 13.85 2.60 39.06 4.40
712 713 4.790123 GCGACTACAGTAACAGAGCTATGG 60.790 50.000 13.85 0.00 0.00 2.74
713 714 4.035792 AGCGACTACAGTAACAGAGCTATG 59.964 45.833 6.84 6.84 31.40 2.23
714 715 4.200874 AGCGACTACAGTAACAGAGCTAT 58.799 43.478 0.00 0.00 31.40 2.97
715 716 3.607741 AGCGACTACAGTAACAGAGCTA 58.392 45.455 0.00 0.00 31.40 3.32
716 717 2.420722 GAGCGACTACAGTAACAGAGCT 59.579 50.000 0.00 0.00 34.11 4.09
717 718 2.788030 GAGCGACTACAGTAACAGAGC 58.212 52.381 0.00 0.00 0.00 4.09
718 719 2.788407 GCGAGCGACTACAGTAACAGAG 60.788 54.545 0.00 0.00 0.00 3.35
719 720 1.129998 GCGAGCGACTACAGTAACAGA 59.870 52.381 0.00 0.00 0.00 3.41
720 721 1.536149 GCGAGCGACTACAGTAACAG 58.464 55.000 0.00 0.00 0.00 3.16
721 722 0.179207 CGCGAGCGACTACAGTAACA 60.179 55.000 12.58 0.00 42.83 2.41
722 723 2.552431 CGCGAGCGACTACAGTAAC 58.448 57.895 12.58 0.00 42.83 2.50
739 740 3.844099 GGTCTGTTAGCGTTTATTTTGCG 59.156 43.478 0.00 0.00 0.00 4.85
740 741 3.844099 CGGTCTGTTAGCGTTTATTTTGC 59.156 43.478 0.00 0.00 44.00 3.68
752 753 2.798148 AAAGGGCCGCGGTCTGTTAG 62.798 60.000 31.31 0.00 0.00 2.34
753 754 1.543065 TAAAGGGCCGCGGTCTGTTA 61.543 55.000 31.31 23.36 0.00 2.41
754 755 2.886134 TAAAGGGCCGCGGTCTGTT 61.886 57.895 31.31 24.42 0.00 3.16
755 756 3.315949 TAAAGGGCCGCGGTCTGT 61.316 61.111 31.31 22.13 0.00 3.41
756 757 2.818274 GTAAAGGGCCGCGGTCTG 60.818 66.667 31.31 1.94 0.00 3.51
757 758 3.001406 AGTAAAGGGCCGCGGTCT 61.001 61.111 31.31 22.51 0.00 3.85
758 759 2.818274 CAGTAAAGGGCCGCGGTC 60.818 66.667 28.70 26.82 0.00 4.79
759 760 3.633116 ACAGTAAAGGGCCGCGGT 61.633 61.111 28.70 9.01 0.00 5.68
760 761 3.124921 CACAGTAAAGGGCCGCGG 61.125 66.667 24.05 24.05 0.00 6.46
761 762 3.124921 CCACAGTAAAGGGCCGCG 61.125 66.667 0.00 0.00 0.00 6.46
762 763 2.033602 ACCACAGTAAAGGGCCGC 59.966 61.111 0.00 0.00 0.00 6.53
763 764 1.740296 CGACCACAGTAAAGGGCCG 60.740 63.158 0.00 0.00 0.00 6.13
764 765 0.250597 AACGACCACAGTAAAGGGCC 60.251 55.000 0.00 0.00 0.00 5.80
765 766 1.154197 GAACGACCACAGTAAAGGGC 58.846 55.000 0.00 0.00 0.00 5.19
766 767 1.425412 CGAACGACCACAGTAAAGGG 58.575 55.000 0.00 0.00 0.00 3.95
767 768 0.788391 GCGAACGACCACAGTAAAGG 59.212 55.000 0.00 0.00 0.00 3.11
768 769 1.455786 CAGCGAACGACCACAGTAAAG 59.544 52.381 0.00 0.00 0.00 1.85
769 770 1.493772 CAGCGAACGACCACAGTAAA 58.506 50.000 0.00 0.00 0.00 2.01
770 771 0.942410 GCAGCGAACGACCACAGTAA 60.942 55.000 0.00 0.00 0.00 2.24
771 772 1.372499 GCAGCGAACGACCACAGTA 60.372 57.895 0.00 0.00 0.00 2.74
772 773 2.661866 GCAGCGAACGACCACAGT 60.662 61.111 0.00 0.00 0.00 3.55
773 774 3.767230 CGCAGCGAACGACCACAG 61.767 66.667 9.98 0.00 0.00 3.66
774 775 4.273257 TCGCAGCGAACGACCACA 62.273 61.111 17.02 0.00 33.96 4.17
775 776 3.470567 CTCGCAGCGAACGACCAC 61.471 66.667 20.04 0.00 34.74 4.16
776 777 3.610791 CTCTCGCAGCGAACGACCA 62.611 63.158 20.04 0.00 34.74 4.02
777 778 2.600122 ATCTCTCGCAGCGAACGACC 62.600 60.000 20.04 0.00 34.74 4.79
778 779 1.197368 GATCTCTCGCAGCGAACGAC 61.197 60.000 20.04 5.98 34.74 4.34
779 780 1.062685 GATCTCTCGCAGCGAACGA 59.937 57.895 20.04 17.45 34.74 3.85
780 781 1.941734 GGATCTCTCGCAGCGAACG 60.942 63.158 20.04 12.52 34.74 3.95
781 782 1.590259 GGGATCTCTCGCAGCGAAC 60.590 63.158 20.04 7.85 34.74 3.95
782 783 2.808315 GGGATCTCTCGCAGCGAA 59.192 61.111 20.04 4.26 34.74 4.70
783 784 2.935627 TACGGGATCTCTCGCAGCGA 62.936 60.000 18.39 18.39 34.10 4.93
784 785 2.543802 TACGGGATCTCTCGCAGCG 61.544 63.158 9.06 9.06 34.10 5.18
785 786 1.008309 GTACGGGATCTCTCGCAGC 60.008 63.158 0.00 0.00 34.10 5.25
786 787 1.280142 CGTACGGGATCTCTCGCAG 59.720 63.158 7.57 0.00 34.10 5.18
787 788 1.434622 GACGTACGGGATCTCTCGCA 61.435 60.000 21.06 0.00 34.10 5.10
788 789 1.159098 AGACGTACGGGATCTCTCGC 61.159 60.000 21.06 0.00 0.00 5.03
789 790 0.860533 GAGACGTACGGGATCTCTCG 59.139 60.000 21.06 0.00 36.69 4.04
790 791 0.860533 CGAGACGTACGGGATCTCTC 59.139 60.000 23.70 21.00 37.35 3.20
791 792 1.159098 GCGAGACGTACGGGATCTCT 61.159 60.000 23.70 16.07 37.35 3.10
792 793 1.159098 AGCGAGACGTACGGGATCTC 61.159 60.000 21.06 19.95 36.35 2.75
793 794 1.153208 AGCGAGACGTACGGGATCT 60.153 57.895 21.06 13.38 0.00 2.75
794 795 1.279238 GAGCGAGACGTACGGGATC 59.721 63.158 21.06 12.75 0.00 3.36
795 796 1.028330 TTGAGCGAGACGTACGGGAT 61.028 55.000 21.06 4.38 0.00 3.85
796 797 1.028330 ATTGAGCGAGACGTACGGGA 61.028 55.000 21.06 0.00 0.00 5.14
797 798 0.866061 CATTGAGCGAGACGTACGGG 60.866 60.000 21.06 6.86 0.00 5.28
798 799 1.472276 GCATTGAGCGAGACGTACGG 61.472 60.000 21.06 2.24 0.00 4.02
799 800 1.910880 GCATTGAGCGAGACGTACG 59.089 57.895 15.01 15.01 0.00 3.67
809 810 1.797635 GAGCTATTCCTCGCATTGAGC 59.202 52.381 0.00 0.00 43.82 4.26
810 811 3.316283 GAGAGCTATTCCTCGCATTGAG 58.684 50.000 0.00 0.00 44.83 3.02
811 812 2.287849 CGAGAGCTATTCCTCGCATTGA 60.288 50.000 9.31 0.00 44.35 2.57
812 813 2.057316 CGAGAGCTATTCCTCGCATTG 58.943 52.381 9.31 0.00 44.35 2.82
813 814 2.430546 CGAGAGCTATTCCTCGCATT 57.569 50.000 9.31 0.00 44.35 3.56
835 836 1.274167 TGTCGATGTTGAGTGGGGTAC 59.726 52.381 0.00 0.00 0.00 3.34
836 837 1.548719 CTGTCGATGTTGAGTGGGGTA 59.451 52.381 0.00 0.00 0.00 3.69
837 838 0.321671 CTGTCGATGTTGAGTGGGGT 59.678 55.000 0.00 0.00 0.00 4.95
838 839 0.321671 ACTGTCGATGTTGAGTGGGG 59.678 55.000 0.00 0.00 0.00 4.96
839 840 1.000843 TGACTGTCGATGTTGAGTGGG 59.999 52.381 2.98 0.00 0.00 4.61
840 841 2.061773 GTGACTGTCGATGTTGAGTGG 58.938 52.381 2.98 0.00 0.00 4.00
841 842 2.061773 GGTGACTGTCGATGTTGAGTG 58.938 52.381 2.98 0.00 0.00 3.51
842 843 1.335964 CGGTGACTGTCGATGTTGAGT 60.336 52.381 2.98 0.00 0.00 3.41
843 844 1.340658 CGGTGACTGTCGATGTTGAG 58.659 55.000 2.98 0.00 0.00 3.02
844 845 0.666274 GCGGTGACTGTCGATGTTGA 60.666 55.000 2.98 0.00 0.00 3.18
876 877 0.674581 TTCCTTGCTGGCTGTCGATG 60.675 55.000 0.00 0.00 35.26 3.84
877 878 0.392193 CTTCCTTGCTGGCTGTCGAT 60.392 55.000 0.00 0.00 35.26 3.59
928 930 1.467920 GCTGGATTTGGGAGAACAGG 58.532 55.000 0.00 0.00 0.00 4.00
1044 1051 3.197116 GGAAGGGATTGACGAAAGAGGTA 59.803 47.826 0.00 0.00 0.00 3.08
1059 1066 2.379972 GAGATCTCGAACTGGAAGGGA 58.620 52.381 7.04 0.00 39.30 4.20
1742 1749 3.581332 CTCCACCACTACTCTAAAACCCA 59.419 47.826 0.00 0.00 0.00 4.51
1755 1762 1.424638 ACAGTAACTGCTCCACCACT 58.575 50.000 0.00 0.00 34.37 4.00
1812 1822 8.258007 TCACAAACTAGGGTAAATCTATCACAG 58.742 37.037 0.00 0.00 0.00 3.66
1914 1924 7.148407 GCTACTTTCTGCTAAAACTTGCATAGA 60.148 37.037 0.00 0.00 38.59 1.98
1919 1929 5.049405 TCTGCTACTTTCTGCTAAAACTTGC 60.049 40.000 0.00 0.00 0.00 4.01
2024 2034 3.074412 ACAAATTCACTGTAAGAGGCCG 58.926 45.455 0.00 0.00 37.43 6.13
2073 2083 8.219868 TCATCCCATGTTCATATAATCAGTTGT 58.780 33.333 0.00 0.00 0.00 3.32
2123 2135 6.067263 TGAAAAACACACTTATTTCTCCCG 57.933 37.500 0.00 0.00 33.90 5.14
2168 2180 2.294233 ACATGTTGCATGGTGAAGACAC 59.706 45.455 12.87 0.00 45.27 3.67
2206 2221 6.070596 TGCATAGTAGAATACCAGCAGCATAT 60.071 38.462 0.00 0.00 44.47 1.78
2399 2415 4.428209 CAGAAAGCTGTACTCATCGTCAT 58.572 43.478 0.00 0.00 37.37 3.06
2415 2431 4.272504 TGAAACACGTAAAGCTCCAGAAAG 59.727 41.667 0.00 0.00 0.00 2.62
2625 2641 1.961133 AATTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2626 2642 1.961133 TAATTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2627 2643 2.238898 ACTTAATTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2628 2644 2.026636 CACTTAATTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2629 2645 2.026636 TCACTTAATTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2630 2646 3.007635 GTCACTTAATTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2631 2647 3.933332 GAGTCACTTAATTTGGGACGGAG 59.067 47.826 7.56 0.00 33.84 4.63
2632 2648 3.325425 TGAGTCACTTAATTTGGGACGGA 59.675 43.478 7.56 0.00 33.84 4.69
2633 2649 3.670625 TGAGTCACTTAATTTGGGACGG 58.329 45.455 7.56 0.00 33.84 4.79
2634 2650 4.755123 AGTTGAGTCACTTAATTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2635 2651 6.635030 AAGTTGAGTCACTTAATTTGGGAC 57.365 37.500 0.00 5.66 35.10 4.46
2636 2652 6.605594 ACAAAGTTGAGTCACTTAATTTGGGA 59.394 34.615 16.35 0.00 35.87 4.37
2637 2653 6.805713 ACAAAGTTGAGTCACTTAATTTGGG 58.194 36.000 16.35 4.33 35.87 4.12
2638 2654 8.621286 AGTACAAAGTTGAGTCACTTAATTTGG 58.379 33.333 16.35 5.04 35.87 3.28
2643 2659 9.880157 AAGTTAGTACAAAGTTGAGTCACTTAA 57.120 29.630 0.00 0.00 35.87 1.85
2644 2660 9.880157 AAAGTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 0.00 0.00 35.87 2.24
2645 2661 8.788325 AAAGTTAGTACAAAGTTGAGTCACTT 57.212 30.769 0.00 0.00 38.74 3.16
2646 2662 9.530633 CTAAAGTTAGTACAAAGTTGAGTCACT 57.469 33.333 0.00 0.00 0.00 3.41
2647 2663 9.310716 ACTAAAGTTAGTACAAAGTTGAGTCAC 57.689 33.333 1.81 0.00 41.92 3.67
2671 2687 9.310716 GACTCAACTTTGTACTAACTTTGTACT 57.689 33.333 12.73 0.00 40.44 2.73
2672 2688 9.090692 TGACTCAACTTTGTACTAACTTTGTAC 57.909 33.333 6.58 6.58 40.27 2.90
2673 2689 9.090692 GTGACTCAACTTTGTACTAACTTTGTA 57.909 33.333 0.00 0.00 0.00 2.41
2674 2690 7.822822 AGTGACTCAACTTTGTACTAACTTTGT 59.177 33.333 0.00 0.00 0.00 2.83
2675 2691 8.197988 AGTGACTCAACTTTGTACTAACTTTG 57.802 34.615 0.00 0.00 0.00 2.77
2676 2692 8.788325 AAGTGACTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
2682 2698 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2683 2699 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2684 2700 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2685 2701 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2686 2702 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2687 2703 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2688 2704 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2689 2705 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2690 2706 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2691 2707 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2692 2708 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2693 2709 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2694 2710 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
2695 2711 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2696 2712 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2697 2713 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2698 2714 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2699 2715 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2700 2716 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2701 2717 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2702 2718 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2703 2719 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2704 2720 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2705 2721 2.852714 TAATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
2706 2722 3.400322 AGTATAATACTCCCTCCGTCCCA 59.600 47.826 0.00 0.00 32.47 4.37
2707 2723 4.044946 AGTATAATACTCCCTCCGTCCC 57.955 50.000 0.00 0.00 32.47 4.46
2708 2724 4.220163 CCAAGTATAATACTCCCTCCGTCC 59.780 50.000 0.00 0.00 38.26 4.79
2709 2725 4.321824 GCCAAGTATAATACTCCCTCCGTC 60.322 50.000 0.00 0.00 38.26 4.79
2710 2726 3.577415 GCCAAGTATAATACTCCCTCCGT 59.423 47.826 0.00 0.00 38.26 4.69
2711 2727 3.576982 TGCCAAGTATAATACTCCCTCCG 59.423 47.826 0.00 0.00 38.26 4.63
2712 2728 5.013183 ACATGCCAAGTATAATACTCCCTCC 59.987 44.000 0.00 0.00 38.26 4.30
2713 2729 5.934625 CACATGCCAAGTATAATACTCCCTC 59.065 44.000 0.00 0.00 38.26 4.30
2714 2730 5.746065 GCACATGCCAAGTATAATACTCCCT 60.746 44.000 0.00 0.00 34.59 4.20
2715 2731 4.455877 GCACATGCCAAGTATAATACTCCC 59.544 45.833 0.00 0.00 34.59 4.30
2716 2732 5.063204 TGCACATGCCAAGTATAATACTCC 58.937 41.667 0.49 0.00 38.01 3.85
2717 2733 6.652481 AGATGCACATGCCAAGTATAATACTC 59.348 38.462 0.49 0.00 38.01 2.59
2718 2734 6.537355 AGATGCACATGCCAAGTATAATACT 58.463 36.000 0.49 0.00 39.72 2.12
2719 2735 6.808008 AGATGCACATGCCAAGTATAATAC 57.192 37.500 0.49 0.00 41.18 1.89
2749 2765 5.649395 TGTTGACATCCAAATCAATCTCCTC 59.351 40.000 0.00 0.00 37.19 3.71
2775 2791 7.162082 AGAGTTTTACACAGGGAACTAATCAG 58.838 38.462 0.00 0.00 40.21 2.90
2841 2857 7.090808 TCACTACACTAATGTAAGCAGAGTTG 58.909 38.462 0.00 0.00 40.84 3.16
2843 2859 6.835819 TCACTACACTAATGTAAGCAGAGT 57.164 37.500 0.00 0.00 40.84 3.24
2922 2938 3.747099 CACGATAAAGAAGTGGCAAGG 57.253 47.619 0.00 0.00 32.68 3.61
3114 3131 6.069963 ACCAACAAGCTCCTTCTACAATAGAT 60.070 38.462 0.00 0.00 34.22 1.98
3115 3132 5.248477 ACCAACAAGCTCCTTCTACAATAGA 59.752 40.000 0.00 0.00 0.00 1.98
3275 3305 8.178964 GGTCAAAACTATACATATGCAAAACGA 58.821 33.333 1.58 0.00 0.00 3.85
3346 3376 4.219070 TCAGCCAGGAAAAGAACATCATTG 59.781 41.667 0.00 0.00 0.00 2.82
3559 3589 7.450903 TCATATCAGAGTTCATGATGCAGATT 58.549 34.615 0.00 0.00 37.91 2.40
3647 3677 6.603201 TGCAAATTTTAATCTGAGGTAGGAGG 59.397 38.462 0.00 0.00 0.00 4.30
3735 3767 2.747177 ACACCGATTATGTCCTCCTCA 58.253 47.619 0.00 0.00 0.00 3.86
3795 3827 5.239744 CACGTAGTAGCCTACTCTGATGAAT 59.760 44.000 7.87 0.00 41.61 2.57
3834 3866 3.526931 TCTTCCCTAAGTTGCTCATCG 57.473 47.619 0.00 0.00 34.13 3.84
4025 4057 1.079127 CCCGGTCAAAGATCTGCGT 60.079 57.895 0.00 0.00 0.00 5.24
4027 4059 0.250513 AGACCCGGTCAAAGATCTGC 59.749 55.000 19.95 0.00 34.60 4.26
4073 4105 1.208052 TCACCTAGAAGGCATGCAGAC 59.792 52.381 21.36 9.48 39.63 3.51
4121 4153 1.301677 GGTTCAGGTAGCAGCAGCAC 61.302 60.000 3.17 0.00 45.49 4.40
4347 4387 5.866633 ACCAAAACATAATTATGTGCAACCG 59.133 36.000 27.50 16.45 45.55 4.44
4361 4401 4.447138 AACAGGAGTGGACCAAAACATA 57.553 40.909 0.00 0.00 0.00 2.29
4426 4466 4.052199 CCCTTCCTTCCCCTTTTCCTATA 58.948 47.826 0.00 0.00 0.00 1.31
4449 4516 0.526524 GGGATCACTCGAACTCGCTG 60.527 60.000 0.00 0.00 39.60 5.18
4463 4530 2.111251 GCCCTTACCAGCGGGATC 59.889 66.667 10.86 0.00 43.44 3.36
4483 4550 1.301244 CAGCAGGCGTCTCAACAGT 60.301 57.895 0.00 0.00 0.00 3.55
4485 4552 0.038251 CTACAGCAGGCGTCTCAACA 60.038 55.000 0.00 0.00 0.00 3.33
4498 4572 4.795278 GCTAATGACATTTTGCACTACAGC 59.205 41.667 5.89 2.20 0.00 4.40
4501 4575 8.961092 CATAATGCTAATGACATTTTGCACTAC 58.039 33.333 22.27 1.97 38.62 2.73
4523 4597 5.755409 TCTTTTCTCTGTACCCAGCATAA 57.245 39.130 0.00 0.00 38.66 1.90
4558 4644 5.590530 AGTGCATGTTTTGTTTCACCTTA 57.409 34.783 0.00 0.00 0.00 2.69
4559 4645 4.470334 AGTGCATGTTTTGTTTCACCTT 57.530 36.364 0.00 0.00 0.00 3.50
4560 4646 4.887071 TCTAGTGCATGTTTTGTTTCACCT 59.113 37.500 0.00 0.00 0.00 4.00
4561 4647 4.976116 GTCTAGTGCATGTTTTGTTTCACC 59.024 41.667 0.00 0.00 0.00 4.02
4576 4662 4.473477 AACAGGAACCTATGTCTAGTGC 57.527 45.455 0.00 0.00 0.00 4.40
4614 4700 9.555727 GCTAACAGGAACCTATGTATATTTTCA 57.444 33.333 0.00 0.00 0.00 2.69
4615 4701 9.780186 AGCTAACAGGAACCTATGTATATTTTC 57.220 33.333 0.00 0.00 0.00 2.29
4620 4706 9.186837 GCTATAGCTAACAGGAACCTATGTATA 57.813 37.037 17.75 0.00 38.21 1.47
4621 4707 8.068892 GCTATAGCTAACAGGAACCTATGTAT 57.931 38.462 17.75 0.00 38.21 2.29
4622 4708 7.463961 GCTATAGCTAACAGGAACCTATGTA 57.536 40.000 17.75 0.00 38.21 2.29
4712 4798 8.554528 CAAACAATCAAGAATATAGAGCGTGAT 58.445 33.333 0.00 0.00 33.31 3.06
4732 4818 2.331098 CCTCGCTTGCGCAAACAA 59.669 55.556 25.01 3.73 35.30 2.83
4758 4844 0.179137 AATGCGCTCGTCTTCGATGA 60.179 50.000 9.73 0.00 45.21 2.92
4861 5029 1.024271 CACTTTGGTGGAGTGGTGTG 58.976 55.000 0.00 0.00 40.58 3.82
4900 5068 3.005367 CCAGACCTAATGCCAACGTTTTT 59.995 43.478 0.00 0.00 0.00 1.94
4901 5069 2.556622 CCAGACCTAATGCCAACGTTTT 59.443 45.455 0.00 0.00 0.00 2.43
4902 5070 2.159382 CCAGACCTAATGCCAACGTTT 58.841 47.619 0.00 0.00 0.00 3.60
4903 5071 1.821216 CCAGACCTAATGCCAACGTT 58.179 50.000 0.00 0.00 0.00 3.99
4904 5072 0.676782 GCCAGACCTAATGCCAACGT 60.677 55.000 0.00 0.00 0.00 3.99
4905 5073 1.705337 CGCCAGACCTAATGCCAACG 61.705 60.000 0.00 0.00 0.00 4.10
4906 5074 0.676782 ACGCCAGACCTAATGCCAAC 60.677 55.000 0.00 0.00 0.00 3.77
4907 5075 0.392461 GACGCCAGACCTAATGCCAA 60.392 55.000 0.00 0.00 0.00 4.52
4908 5076 1.220749 GACGCCAGACCTAATGCCA 59.779 57.895 0.00 0.00 0.00 4.92
4909 5077 1.523938 GGACGCCAGACCTAATGCC 60.524 63.158 0.00 0.00 0.00 4.40
4910 5078 1.523938 GGGACGCCAGACCTAATGC 60.524 63.158 0.00 0.00 32.72 3.56
4961 5129 1.742831 ACTTGCTTTGCGTCTTTGTGA 59.257 42.857 0.00 0.00 0.00 3.58
4963 5131 3.202906 TCTACTTGCTTTGCGTCTTTGT 58.797 40.909 0.00 0.00 0.00 2.83
4975 5143 6.476378 AGACCATTACAACATTCTACTTGCT 58.524 36.000 0.00 0.00 0.00 3.91
4984 5152 7.448161 TCAACATGAGAAGACCATTACAACATT 59.552 33.333 0.00 0.00 0.00 2.71
4995 5164 6.092807 GGTTCTACAATCAACATGAGAAGACC 59.907 42.308 0.00 0.00 0.00 3.85
5000 5169 5.168569 GTCGGTTCTACAATCAACATGAGA 58.831 41.667 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.