Multiple sequence alignment - TraesCS3B01G297900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G297900 chr3B 100.000 5852 0 0 1 5852 477654699 477648848 0.000000e+00 10807.0
1 TraesCS3B01G297900 chr3B 94.949 297 15 0 225 521 812605710 812605414 3.190000e-127 466.0
2 TraesCS3B01G297900 chr3B 84.189 487 48 12 3931 4395 682067264 682066785 4.160000e-121 446.0
3 TraesCS3B01G297900 chr3B 91.228 114 10 0 1854 1967 829223468 829223581 7.850000e-34 156.0
4 TraesCS3B01G297900 chr3B 87.395 119 13 1 1856 1974 405833894 405833778 1.020000e-27 135.0
5 TraesCS3B01G297900 chr3D 96.082 3190 79 15 2068 5217 366235092 366231909 0.000000e+00 5156.0
6 TraesCS3B01G297900 chr3D 93.343 1427 63 18 581 1990 366236500 366235089 0.000000e+00 2080.0
7 TraesCS3B01G297900 chr3D 87.052 363 18 10 5134 5470 366231925 366231566 3.310000e-102 383.0
8 TraesCS3B01G297900 chr3D 84.455 431 15 8 5468 5852 366231524 366231100 1.540000e-100 377.0
9 TraesCS3B01G297900 chr3D 96.000 125 4 1 1 125 366236806 366236683 9.940000e-48 202.0
10 TraesCS3B01G297900 chr3A 96.414 2900 73 6 1974 4846 488310965 488308070 0.000000e+00 4750.0
11 TraesCS3B01G297900 chr3A 92.090 1378 63 16 521 1861 488312311 488310943 0.000000e+00 1899.0
12 TraesCS3B01G297900 chr3A 86.119 742 68 25 4878 5598 488308065 488307338 0.000000e+00 767.0
13 TraesCS3B01G297900 chr3A 92.977 299 21 0 225 523 722649040 722649338 2.500000e-118 436.0
14 TraesCS3B01G297900 chr3A 92.977 299 21 0 225 523 722689275 722689573 2.500000e-118 436.0
15 TraesCS3B01G297900 chr3A 94.714 227 8 1 1 223 488312539 488312313 3.360000e-92 350.0
16 TraesCS3B01G297900 chr3A 92.500 160 11 1 5694 5852 488307123 488306964 1.640000e-55 228.0
17 TraesCS3B01G297900 chr6A 90.810 642 58 1 942 1583 306372194 306372834 0.000000e+00 857.0
18 TraesCS3B01G297900 chr6A 84.488 664 66 15 3757 4395 608302495 608301844 6.440000e-174 621.0
19 TraesCS3B01G297900 chr6A 84.273 674 62 19 3754 4395 581907855 581908516 8.330000e-173 617.0
20 TraesCS3B01G297900 chr6A 97.143 35 1 0 4025 4059 57760504 57760538 6.330000e-05 60.2
21 TraesCS3B01G297900 chr1B 87.907 645 36 10 4708 5323 190109266 190109897 0.000000e+00 721.0
22 TraesCS3B01G297900 chr1B 93.603 297 19 0 225 521 382548342 382548638 1.500000e-120 444.0
23 TraesCS3B01G297900 chr5A 85.392 664 65 12 3754 4395 465295500 465296153 0.000000e+00 660.0
24 TraesCS3B01G297900 chr5A 92.478 226 16 1 1358 1583 405466715 405466939 7.320000e-84 322.0
25 TraesCS3B01G297900 chr5A 86.344 227 24 6 3486 3706 465295265 465295490 2.110000e-59 241.0
26 TraesCS3B01G297900 chr5A 85.500 200 24 3 4929 5126 362402125 362401929 2.760000e-48 204.0
27 TraesCS3B01G297900 chr1A 84.328 670 65 18 3754 4395 46235607 46236264 2.320000e-173 619.0
28 TraesCS3B01G297900 chr1A 92.478 226 16 1 1358 1583 2155330 2155554 7.320000e-84 322.0
29 TraesCS3B01G297900 chr1A 91.244 217 14 4 4179 4395 465249518 465249307 2.060000e-74 291.0
30 TraesCS3B01G297900 chr1A 87.225 227 21 4 3486 3706 46235373 46235597 9.730000e-63 252.0
31 TraesCS3B01G297900 chr1D 94.690 339 18 0 1227 1565 418773163 418772825 1.440000e-145 527.0
32 TraesCS3B01G297900 chr1D 92.708 288 20 1 944 1231 418784322 418784036 1.170000e-111 414.0
33 TraesCS3B01G297900 chr1D 89.381 113 10 1 1853 1965 341232768 341232658 2.200000e-29 141.0
34 TraesCS3B01G297900 chr2B 93.688 301 19 0 223 523 110318733 110319033 8.940000e-123 451.0
35 TraesCS3B01G297900 chr4A 93.289 298 20 0 225 522 447320152 447320449 1.940000e-119 440.0
36 TraesCS3B01G297900 chr4B 93.000 300 21 0 225 524 383588978 383588679 6.960000e-119 438.0
37 TraesCS3B01G297900 chr6B 93.000 300 20 1 225 524 446105361 446105063 2.500000e-118 436.0
38 TraesCS3B01G297900 chr6B 86.010 193 22 3 4929 5119 24724906 24725095 9.940000e-48 202.0
39 TraesCS3B01G297900 chr5B 92.977 299 19 2 225 521 434316843 434317141 9.010000e-118 435.0
40 TraesCS3B01G297900 chr2A 93.304 224 14 1 1358 1581 716708560 716708338 4.370000e-86 329.0
41 TraesCS3B01G297900 chr2A 92.478 226 17 0 1358 1583 139068556 139068781 2.030000e-84 324.0
42 TraesCS3B01G297900 chr7D 93.970 199 12 0 4179 4377 162120973 162121171 9.530000e-78 302.0
43 TraesCS3B01G297900 chr7D 86.500 200 22 2 4929 5126 565592766 565592570 1.280000e-51 215.0
44 TraesCS3B01G297900 chr5D 93.970 199 12 0 4179 4377 69523835 69523637 9.530000e-78 302.0
45 TraesCS3B01G297900 chr5D 86.555 119 15 1 1854 1972 426972652 426972769 4.760000e-26 130.0
46 TraesCS3B01G297900 chr5D 85.366 123 15 2 1854 1976 427013390 427013509 2.210000e-24 124.0
47 TraesCS3B01G297900 chr5D 85.366 123 15 2 1854 1976 427072852 427072971 2.210000e-24 124.0
48 TraesCS3B01G297900 chr5D 85.366 123 15 2 1854 1976 427081223 427081342 2.210000e-24 124.0
49 TraesCS3B01G297900 chr5D 85.366 123 15 2 1854 1976 427147788 427147907 2.210000e-24 124.0
50 TraesCS3B01G297900 chr4D 93.970 199 12 0 4179 4377 220919909 220920107 9.530000e-78 302.0
51 TraesCS3B01G297900 chr2D 93.970 199 12 0 4179 4377 35972692 35972494 9.530000e-78 302.0
52 TraesCS3B01G297900 chr2D 97.059 34 0 1 716 749 4227931 4227963 8.190000e-04 56.5
53 TraesCS3B01G297900 chrUn 97.368 38 1 0 4025 4062 19189119 19189082 1.360000e-06 65.8
54 TraesCS3B01G297900 chr7B 97.059 34 0 1 716 749 699660055 699660087 8.190000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G297900 chr3B 477648848 477654699 5851 True 10807.0 10807 100.0000 1 5852 1 chr3B.!!$R2 5851
1 TraesCS3B01G297900 chr3D 366231100 366236806 5706 True 1639.6 5156 91.3864 1 5852 5 chr3D.!!$R1 5851
2 TraesCS3B01G297900 chr3A 488306964 488312539 5575 True 1598.8 4750 92.3674 1 5852 5 chr3A.!!$R1 5851
3 TraesCS3B01G297900 chr6A 306372194 306372834 640 False 857.0 857 90.8100 942 1583 1 chr6A.!!$F2 641
4 TraesCS3B01G297900 chr6A 608301844 608302495 651 True 621.0 621 84.4880 3757 4395 1 chr6A.!!$R1 638
5 TraesCS3B01G297900 chr6A 581907855 581908516 661 False 617.0 617 84.2730 3754 4395 1 chr6A.!!$F3 641
6 TraesCS3B01G297900 chr1B 190109266 190109897 631 False 721.0 721 87.9070 4708 5323 1 chr1B.!!$F1 615
7 TraesCS3B01G297900 chr5A 465295265 465296153 888 False 450.5 660 85.8680 3486 4395 2 chr5A.!!$F2 909
8 TraesCS3B01G297900 chr1A 46235373 46236264 891 False 435.5 619 85.7765 3486 4395 2 chr1A.!!$F2 909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 519 0.038599 TACACCGTGGAGCACTAGGA 59.961 55.000 3.03 0.0 31.34 2.94 F
515 521 0.108615 CACCGTGGAGCACTAGGAAG 60.109 60.000 0.00 0.0 31.34 3.46 F
1392 1429 0.779997 AGGTTTGTTCCTGGCTCCAT 59.220 50.000 0.00 0.0 36.35 3.41 F
2040 2096 1.134521 ACACGAATATGTGATGGCGGT 60.135 47.619 0.24 0.0 42.55 5.68 F
2968 3044 0.476771 AACCCAACACCCTGTCGATT 59.523 50.000 0.00 0.0 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 1935 0.037326 CGGCCTCTGCACAACTAAGA 60.037 55.000 0.00 0.00 40.13 2.10 R
1890 1946 1.817099 GAGCAATGTCCGGCCTCTG 60.817 63.158 0.00 0.00 0.00 3.35 R
2778 2854 0.592637 TTGAGTTCAGGCATGCAACG 59.407 50.000 21.36 6.97 0.00 4.10 R
3814 3898 2.311542 ACATCTACCATTCCTGCCCAAA 59.688 45.455 0.00 0.00 0.00 3.28 R
4893 5028 0.591659 GCCGTCAGGTTTCCAACTTC 59.408 55.000 0.00 0.00 40.50 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.470494 TCGCAAACTGCTGTCACAAAA 59.530 42.857 0.00 0.00 42.25 2.44
55 57 1.853963 ATCCAACTAGTCAGCTCCGT 58.146 50.000 0.00 0.00 0.00 4.69
191 193 1.463528 CGTCGAATTCAAAACGGAGGC 60.464 52.381 14.06 0.00 0.00 4.70
223 229 3.227276 CCTCCGGAGCCTGCGTAT 61.227 66.667 26.87 0.00 0.00 3.06
224 230 2.797278 CCTCCGGAGCCTGCGTATT 61.797 63.158 26.87 0.00 0.00 1.89
225 231 1.300233 CTCCGGAGCCTGCGTATTC 60.300 63.158 20.67 0.00 0.00 1.75
226 232 2.280186 CCGGAGCCTGCGTATTCC 60.280 66.667 4.57 0.00 0.00 3.01
227 233 2.280186 CGGAGCCTGCGTATTCCC 60.280 66.667 0.00 0.00 0.00 3.97
228 234 2.908015 GGAGCCTGCGTATTCCCA 59.092 61.111 0.00 0.00 0.00 4.37
229 235 1.223487 GGAGCCTGCGTATTCCCAA 59.777 57.895 0.00 0.00 0.00 4.12
230 236 0.179018 GGAGCCTGCGTATTCCCAAT 60.179 55.000 0.00 0.00 0.00 3.16
231 237 0.947244 GAGCCTGCGTATTCCCAATG 59.053 55.000 0.00 0.00 0.00 2.82
232 238 1.103398 AGCCTGCGTATTCCCAATGC 61.103 55.000 0.00 0.00 0.00 3.56
233 239 1.383456 GCCTGCGTATTCCCAATGCA 61.383 55.000 0.00 0.00 37.33 3.96
234 240 1.321474 CCTGCGTATTCCCAATGCAT 58.679 50.000 0.00 0.00 38.16 3.96
235 241 1.682854 CCTGCGTATTCCCAATGCATT 59.317 47.619 5.99 5.99 38.16 3.56
236 242 2.544277 CCTGCGTATTCCCAATGCATTG 60.544 50.000 28.91 28.91 38.16 2.82
251 257 1.923356 CATTGGTGCTAAAGTGGGGT 58.077 50.000 0.00 0.00 0.00 4.95
252 258 1.545582 CATTGGTGCTAAAGTGGGGTG 59.454 52.381 0.00 0.00 0.00 4.61
253 259 0.825840 TTGGTGCTAAAGTGGGGTGC 60.826 55.000 0.00 0.00 0.00 5.01
254 260 1.074951 GGTGCTAAAGTGGGGTGCT 59.925 57.895 0.00 0.00 0.00 4.40
255 261 0.326927 GGTGCTAAAGTGGGGTGCTA 59.673 55.000 0.00 0.00 0.00 3.49
256 262 1.271707 GGTGCTAAAGTGGGGTGCTAA 60.272 52.381 0.00 0.00 0.00 3.09
257 263 2.084546 GTGCTAAAGTGGGGTGCTAAG 58.915 52.381 0.00 0.00 0.00 2.18
258 264 1.702957 TGCTAAAGTGGGGTGCTAAGT 59.297 47.619 0.00 0.00 0.00 2.24
259 265 2.084546 GCTAAAGTGGGGTGCTAAGTG 58.915 52.381 0.00 0.00 0.00 3.16
260 266 2.084546 CTAAAGTGGGGTGCTAAGTGC 58.915 52.381 0.00 0.00 43.25 4.40
288 294 6.715347 AAATGCTTATCAACTAATGTCCCC 57.285 37.500 0.00 0.00 0.00 4.81
289 295 4.853468 TGCTTATCAACTAATGTCCCCA 57.147 40.909 0.00 0.00 0.00 4.96
290 296 5.186256 TGCTTATCAACTAATGTCCCCAA 57.814 39.130 0.00 0.00 0.00 4.12
291 297 5.765510 TGCTTATCAACTAATGTCCCCAAT 58.234 37.500 0.00 0.00 0.00 3.16
292 298 5.593909 TGCTTATCAACTAATGTCCCCAATG 59.406 40.000 0.00 0.00 0.00 2.82
293 299 5.507985 GCTTATCAACTAATGTCCCCAATGC 60.508 44.000 0.00 0.00 0.00 3.56
294 300 3.448093 TCAACTAATGTCCCCAATGCA 57.552 42.857 0.00 0.00 0.00 3.96
295 301 3.979911 TCAACTAATGTCCCCAATGCAT 58.020 40.909 0.00 0.00 0.00 3.96
296 302 4.352009 TCAACTAATGTCCCCAATGCATT 58.648 39.130 5.99 5.99 36.83 3.56
297 303 4.160065 TCAACTAATGTCCCCAATGCATTG 59.840 41.667 28.91 28.91 34.97 2.82
315 321 4.485163 CATTGGTGCTTAGGTTTTGTAGC 58.515 43.478 0.00 0.00 0.00 3.58
316 322 3.502123 TGGTGCTTAGGTTTTGTAGCT 57.498 42.857 0.00 0.00 38.39 3.32
317 323 4.627284 TGGTGCTTAGGTTTTGTAGCTA 57.373 40.909 0.00 0.00 35.80 3.32
318 324 4.975631 TGGTGCTTAGGTTTTGTAGCTAA 58.024 39.130 0.00 0.00 42.83 3.09
324 330 3.351794 AGGTTTTGTAGCTAAGCCTCC 57.648 47.619 0.00 0.00 31.47 4.30
325 331 2.913617 AGGTTTTGTAGCTAAGCCTCCT 59.086 45.455 0.00 0.00 31.47 3.69
326 332 3.330998 AGGTTTTGTAGCTAAGCCTCCTT 59.669 43.478 0.00 0.00 31.47 3.36
327 333 4.079970 GGTTTTGTAGCTAAGCCTCCTTT 58.920 43.478 0.00 0.00 32.47 3.11
328 334 5.013808 AGGTTTTGTAGCTAAGCCTCCTTTA 59.986 40.000 0.00 0.00 31.47 1.85
329 335 5.886474 GGTTTTGTAGCTAAGCCTCCTTTAT 59.114 40.000 0.00 0.00 32.47 1.40
330 336 6.377429 GGTTTTGTAGCTAAGCCTCCTTTATT 59.623 38.462 0.00 0.00 32.47 1.40
331 337 7.093902 GGTTTTGTAGCTAAGCCTCCTTTATTT 60.094 37.037 0.00 0.00 32.47 1.40
332 338 8.953313 GTTTTGTAGCTAAGCCTCCTTTATTTA 58.047 33.333 0.00 0.00 32.47 1.40
333 339 9.523168 TTTTGTAGCTAAGCCTCCTTTATTTAA 57.477 29.630 0.00 0.00 32.47 1.52
334 340 9.695155 TTTGTAGCTAAGCCTCCTTTATTTAAT 57.305 29.630 0.00 0.00 32.47 1.40
335 341 9.695155 TTGTAGCTAAGCCTCCTTTATTTAATT 57.305 29.630 0.00 0.00 32.47 1.40
336 342 9.120538 TGTAGCTAAGCCTCCTTTATTTAATTG 57.879 33.333 0.00 0.00 32.47 2.32
337 343 9.121658 GTAGCTAAGCCTCCTTTATTTAATTGT 57.878 33.333 0.00 0.00 32.47 2.71
338 344 8.595362 AGCTAAGCCTCCTTTATTTAATTGTT 57.405 30.769 0.00 0.00 32.47 2.83
339 345 9.035890 AGCTAAGCCTCCTTTATTTAATTGTTT 57.964 29.630 0.00 0.00 32.47 2.83
369 375 5.982890 AAACTCCTTCATGTATTGGTTGG 57.017 39.130 0.00 0.00 0.00 3.77
370 376 4.657814 ACTCCTTCATGTATTGGTTGGT 57.342 40.909 0.00 0.00 0.00 3.67
371 377 5.772393 ACTCCTTCATGTATTGGTTGGTA 57.228 39.130 0.00 0.00 0.00 3.25
372 378 5.745227 ACTCCTTCATGTATTGGTTGGTAG 58.255 41.667 0.00 0.00 0.00 3.18
373 379 5.250774 ACTCCTTCATGTATTGGTTGGTAGT 59.749 40.000 0.00 0.00 0.00 2.73
374 380 5.741011 TCCTTCATGTATTGGTTGGTAGTC 58.259 41.667 0.00 0.00 0.00 2.59
375 381 5.487488 TCCTTCATGTATTGGTTGGTAGTCT 59.513 40.000 0.00 0.00 0.00 3.24
376 382 6.012858 TCCTTCATGTATTGGTTGGTAGTCTT 60.013 38.462 0.00 0.00 0.00 3.01
377 383 6.659242 CCTTCATGTATTGGTTGGTAGTCTTT 59.341 38.462 0.00 0.00 0.00 2.52
378 384 7.176690 CCTTCATGTATTGGTTGGTAGTCTTTT 59.823 37.037 0.00 0.00 0.00 2.27
379 385 8.472007 TTCATGTATTGGTTGGTAGTCTTTTT 57.528 30.769 0.00 0.00 0.00 1.94
380 386 7.881142 TCATGTATTGGTTGGTAGTCTTTTTG 58.119 34.615 0.00 0.00 0.00 2.44
381 387 7.504238 TCATGTATTGGTTGGTAGTCTTTTTGT 59.496 33.333 0.00 0.00 0.00 2.83
382 388 7.266922 TGTATTGGTTGGTAGTCTTTTTGTC 57.733 36.000 0.00 0.00 0.00 3.18
383 389 7.057894 TGTATTGGTTGGTAGTCTTTTTGTCT 58.942 34.615 0.00 0.00 0.00 3.41
384 390 8.212312 TGTATTGGTTGGTAGTCTTTTTGTCTA 58.788 33.333 0.00 0.00 0.00 2.59
385 391 7.745620 ATTGGTTGGTAGTCTTTTTGTCTAG 57.254 36.000 0.00 0.00 0.00 2.43
386 392 5.617252 TGGTTGGTAGTCTTTTTGTCTAGG 58.383 41.667 0.00 0.00 0.00 3.02
387 393 5.131475 TGGTTGGTAGTCTTTTTGTCTAGGT 59.869 40.000 0.00 0.00 0.00 3.08
388 394 6.060136 GGTTGGTAGTCTTTTTGTCTAGGTT 58.940 40.000 0.00 0.00 0.00 3.50
389 395 6.204301 GGTTGGTAGTCTTTTTGTCTAGGTTC 59.796 42.308 0.00 0.00 0.00 3.62
390 396 6.488769 TGGTAGTCTTTTTGTCTAGGTTCA 57.511 37.500 0.00 0.00 0.00 3.18
391 397 6.285990 TGGTAGTCTTTTTGTCTAGGTTCAC 58.714 40.000 0.00 0.00 0.00 3.18
392 398 5.404667 GGTAGTCTTTTTGTCTAGGTTCACG 59.595 44.000 0.00 0.00 0.00 4.35
393 399 5.019785 AGTCTTTTTGTCTAGGTTCACGT 57.980 39.130 0.00 0.00 0.00 4.49
394 400 6.152932 AGTCTTTTTGTCTAGGTTCACGTA 57.847 37.500 0.00 0.00 0.00 3.57
395 401 5.981915 AGTCTTTTTGTCTAGGTTCACGTAC 59.018 40.000 0.00 0.00 0.00 3.67
396 402 5.981915 GTCTTTTTGTCTAGGTTCACGTACT 59.018 40.000 0.00 0.00 0.00 2.73
397 403 6.478016 GTCTTTTTGTCTAGGTTCACGTACTT 59.522 38.462 0.00 0.00 0.00 2.24
398 404 7.649306 GTCTTTTTGTCTAGGTTCACGTACTTA 59.351 37.037 0.00 0.00 0.00 2.24
399 405 7.864379 TCTTTTTGTCTAGGTTCACGTACTTAG 59.136 37.037 2.10 2.10 0.00 2.18
400 406 4.691860 TGTCTAGGTTCACGTACTTAGC 57.308 45.455 3.40 0.98 30.26 3.09
401 407 4.074259 TGTCTAGGTTCACGTACTTAGCA 58.926 43.478 3.40 3.04 30.26 3.49
402 408 4.703575 TGTCTAGGTTCACGTACTTAGCAT 59.296 41.667 3.40 0.00 30.26 3.79
403 409 5.184479 TGTCTAGGTTCACGTACTTAGCATT 59.816 40.000 3.40 0.00 30.26 3.56
404 410 5.515626 GTCTAGGTTCACGTACTTAGCATTG 59.484 44.000 3.40 0.00 30.26 2.82
405 411 3.596214 AGGTTCACGTACTTAGCATTGG 58.404 45.455 0.00 0.00 0.00 3.16
406 412 3.007614 AGGTTCACGTACTTAGCATTGGT 59.992 43.478 0.00 0.00 0.00 3.67
407 413 3.749609 GGTTCACGTACTTAGCATTGGTT 59.250 43.478 0.00 0.00 0.00 3.67
408 414 4.378046 GGTTCACGTACTTAGCATTGGTTG 60.378 45.833 0.00 0.00 0.00 3.77
409 415 3.997762 TCACGTACTTAGCATTGGTTGT 58.002 40.909 0.00 0.00 0.00 3.32
410 416 4.382291 TCACGTACTTAGCATTGGTTGTT 58.618 39.130 0.00 0.00 0.00 2.83
411 417 5.539979 TCACGTACTTAGCATTGGTTGTTA 58.460 37.500 0.00 0.00 0.00 2.41
412 418 6.167685 TCACGTACTTAGCATTGGTTGTTAT 58.832 36.000 0.00 0.00 0.00 1.89
413 419 6.651643 TCACGTACTTAGCATTGGTTGTTATT 59.348 34.615 0.00 0.00 0.00 1.40
414 420 6.740905 CACGTACTTAGCATTGGTTGTTATTG 59.259 38.462 0.00 0.00 0.00 1.90
415 421 6.128117 ACGTACTTAGCATTGGTTGTTATTGG 60.128 38.462 0.00 0.00 0.00 3.16
416 422 5.659440 ACTTAGCATTGGTTGTTATTGGG 57.341 39.130 0.00 0.00 0.00 4.12
417 423 4.466015 ACTTAGCATTGGTTGTTATTGGGG 59.534 41.667 0.00 0.00 0.00 4.96
418 424 2.901291 AGCATTGGTTGTTATTGGGGT 58.099 42.857 0.00 0.00 0.00 4.95
419 425 2.831526 AGCATTGGTTGTTATTGGGGTC 59.168 45.455 0.00 0.00 0.00 4.46
420 426 2.564947 GCATTGGTTGTTATTGGGGTCA 59.435 45.455 0.00 0.00 0.00 4.02
421 427 3.616317 GCATTGGTTGTTATTGGGGTCAC 60.616 47.826 0.00 0.00 0.00 3.67
422 428 2.296073 TGGTTGTTATTGGGGTCACC 57.704 50.000 0.00 0.00 40.81 4.02
432 438 1.595311 TGGGGTCACCATAATGCTCT 58.405 50.000 0.00 0.00 46.80 4.09
433 439 1.490490 TGGGGTCACCATAATGCTCTC 59.510 52.381 0.00 0.00 46.80 3.20
434 440 1.771255 GGGGTCACCATAATGCTCTCT 59.229 52.381 0.00 0.00 39.85 3.10
435 441 2.224402 GGGGTCACCATAATGCTCTCTC 60.224 54.545 0.00 0.00 39.85 3.20
436 442 2.703007 GGGTCACCATAATGCTCTCTCT 59.297 50.000 0.00 0.00 36.50 3.10
437 443 3.244044 GGGTCACCATAATGCTCTCTCTC 60.244 52.174 0.00 0.00 36.50 3.20
438 444 3.244044 GGTCACCATAATGCTCTCTCTCC 60.244 52.174 0.00 0.00 0.00 3.71
439 445 3.640967 GTCACCATAATGCTCTCTCTCCT 59.359 47.826 0.00 0.00 0.00 3.69
440 446 3.894427 TCACCATAATGCTCTCTCTCCTC 59.106 47.826 0.00 0.00 0.00 3.71
441 447 3.896888 CACCATAATGCTCTCTCTCCTCT 59.103 47.826 0.00 0.00 0.00 3.69
442 448 4.344679 CACCATAATGCTCTCTCTCCTCTT 59.655 45.833 0.00 0.00 0.00 2.85
443 449 4.968080 ACCATAATGCTCTCTCTCCTCTTT 59.032 41.667 0.00 0.00 0.00 2.52
444 450 6.041409 CACCATAATGCTCTCTCTCCTCTTTA 59.959 42.308 0.00 0.00 0.00 1.85
445 451 6.613271 ACCATAATGCTCTCTCTCCTCTTTAA 59.387 38.462 0.00 0.00 0.00 1.52
446 452 7.292120 ACCATAATGCTCTCTCTCCTCTTTAAT 59.708 37.037 0.00 0.00 0.00 1.40
447 453 8.156165 CCATAATGCTCTCTCTCCTCTTTAATT 58.844 37.037 0.00 0.00 0.00 1.40
448 454 8.991026 CATAATGCTCTCTCTCCTCTTTAATTG 58.009 37.037 0.00 0.00 0.00 2.32
449 455 6.558488 ATGCTCTCTCTCCTCTTTAATTGT 57.442 37.500 0.00 0.00 0.00 2.71
450 456 6.365970 TGCTCTCTCTCCTCTTTAATTGTT 57.634 37.500 0.00 0.00 0.00 2.83
451 457 7.482169 TGCTCTCTCTCCTCTTTAATTGTTA 57.518 36.000 0.00 0.00 0.00 2.41
452 458 8.083828 TGCTCTCTCTCCTCTTTAATTGTTAT 57.916 34.615 0.00 0.00 0.00 1.89
453 459 7.984050 TGCTCTCTCTCCTCTTTAATTGTTATG 59.016 37.037 0.00 0.00 0.00 1.90
454 460 7.984617 GCTCTCTCTCCTCTTTAATTGTTATGT 59.015 37.037 0.00 0.00 0.00 2.29
455 461 9.528018 CTCTCTCTCCTCTTTAATTGTTATGTC 57.472 37.037 0.00 0.00 0.00 3.06
456 462 9.035890 TCTCTCTCCTCTTTAATTGTTATGTCA 57.964 33.333 0.00 0.00 0.00 3.58
457 463 9.092876 CTCTCTCCTCTTTAATTGTTATGTCAC 57.907 37.037 0.00 0.00 0.00 3.67
458 464 8.593679 TCTCTCCTCTTTAATTGTTATGTCACA 58.406 33.333 0.00 0.00 0.00 3.58
459 465 9.388506 CTCTCCTCTTTAATTGTTATGTCACAT 57.611 33.333 0.00 0.00 0.00 3.21
460 466 9.739276 TCTCCTCTTTAATTGTTATGTCACATT 57.261 29.630 0.00 0.00 0.00 2.71
471 477 8.755696 TTGTTATGTCACATTATTTTTCTGCC 57.244 30.769 0.00 0.00 0.00 4.85
472 478 8.121305 TGTTATGTCACATTATTTTTCTGCCT 57.879 30.769 0.00 0.00 0.00 4.75
473 479 9.237187 TGTTATGTCACATTATTTTTCTGCCTA 57.763 29.630 0.00 0.00 0.00 3.93
476 482 7.701539 TGTCACATTATTTTTCTGCCTATGT 57.298 32.000 0.00 0.00 0.00 2.29
477 483 7.537715 TGTCACATTATTTTTCTGCCTATGTG 58.462 34.615 0.00 0.00 41.48 3.21
478 484 6.974622 GTCACATTATTTTTCTGCCTATGTGG 59.025 38.462 0.00 0.00 40.86 4.17
489 495 2.418368 CCTATGTGGCACCTTTAGCA 57.582 50.000 16.26 0.00 0.00 3.49
490 496 2.936202 CCTATGTGGCACCTTTAGCAT 58.064 47.619 16.26 2.31 0.00 3.79
491 497 2.880890 CCTATGTGGCACCTTTAGCATC 59.119 50.000 16.26 0.00 0.00 3.91
492 498 2.814805 ATGTGGCACCTTTAGCATCT 57.185 45.000 16.26 0.00 0.00 2.90
493 499 1.825090 TGTGGCACCTTTAGCATCTG 58.175 50.000 16.26 0.00 0.00 2.90
494 500 1.073763 TGTGGCACCTTTAGCATCTGT 59.926 47.619 16.26 0.00 0.00 3.41
495 501 2.304470 TGTGGCACCTTTAGCATCTGTA 59.696 45.455 16.26 0.00 0.00 2.74
496 502 2.678336 GTGGCACCTTTAGCATCTGTAC 59.322 50.000 6.29 0.00 0.00 2.90
497 503 2.304470 TGGCACCTTTAGCATCTGTACA 59.696 45.455 0.00 0.00 0.00 2.90
498 504 2.678336 GGCACCTTTAGCATCTGTACAC 59.322 50.000 0.00 0.00 0.00 2.90
499 505 2.678336 GCACCTTTAGCATCTGTACACC 59.322 50.000 0.00 0.00 0.00 4.16
500 506 2.930040 CACCTTTAGCATCTGTACACCG 59.070 50.000 0.00 0.00 0.00 4.94
501 507 2.565834 ACCTTTAGCATCTGTACACCGT 59.434 45.455 0.00 0.00 0.00 4.83
502 508 2.930040 CCTTTAGCATCTGTACACCGTG 59.070 50.000 0.00 0.00 0.00 4.94
503 509 2.665649 TTAGCATCTGTACACCGTGG 57.334 50.000 3.03 0.00 0.00 4.94
504 510 1.842052 TAGCATCTGTACACCGTGGA 58.158 50.000 3.03 0.00 0.00 4.02
505 511 0.532573 AGCATCTGTACACCGTGGAG 59.467 55.000 3.03 0.00 0.00 3.86
506 512 1.084370 GCATCTGTACACCGTGGAGC 61.084 60.000 3.03 0.00 0.00 4.70
507 513 0.246360 CATCTGTACACCGTGGAGCA 59.754 55.000 3.03 0.00 0.00 4.26
508 514 0.246635 ATCTGTACACCGTGGAGCAC 59.753 55.000 3.03 0.00 0.00 4.40
509 515 0.826256 TCTGTACACCGTGGAGCACT 60.826 55.000 3.03 0.00 31.34 4.40
510 516 0.885879 CTGTACACCGTGGAGCACTA 59.114 55.000 3.03 0.00 31.34 2.74
511 517 0.885879 TGTACACCGTGGAGCACTAG 59.114 55.000 3.03 0.00 31.34 2.57
512 518 0.172803 GTACACCGTGGAGCACTAGG 59.827 60.000 3.03 0.00 31.34 3.02
513 519 0.038599 TACACCGTGGAGCACTAGGA 59.961 55.000 3.03 0.00 31.34 2.94
514 520 0.830444 ACACCGTGGAGCACTAGGAA 60.830 55.000 3.03 0.00 31.34 3.36
515 521 0.108615 CACCGTGGAGCACTAGGAAG 60.109 60.000 0.00 0.00 31.34 3.46
516 522 1.258445 ACCGTGGAGCACTAGGAAGG 61.258 60.000 0.00 0.00 31.34 3.46
517 523 1.517832 CGTGGAGCACTAGGAAGGG 59.482 63.158 0.00 0.00 31.34 3.95
857 888 3.854669 CTCGGGCCGGATCTGCTT 61.855 66.667 27.98 0.00 0.00 3.91
860 891 4.496336 GGGCCGGATCTGCTTGCT 62.496 66.667 5.05 0.00 0.00 3.91
861 892 2.899339 GGCCGGATCTGCTTGCTC 60.899 66.667 5.05 0.00 0.00 4.26
862 893 3.267860 GCCGGATCTGCTTGCTCG 61.268 66.667 5.05 0.00 0.00 5.03
863 894 3.267860 CCGGATCTGCTTGCTCGC 61.268 66.667 0.00 0.00 0.00 5.03
864 895 2.202851 CGGATCTGCTTGCTCGCT 60.203 61.111 0.00 0.00 0.00 4.93
910 941 2.532465 GAAACCCTAGGTCCACCGGC 62.532 65.000 8.29 0.00 42.08 6.13
927 958 2.412112 CGATTCCGTCTCCCCGTC 59.588 66.667 0.00 0.00 0.00 4.79
929 960 2.762875 ATTCCGTCTCCCCGTCCC 60.763 66.667 0.00 0.00 0.00 4.46
1079 1115 2.126580 GCTCAACGTACGTCGCCT 60.127 61.111 23.05 2.32 44.19 5.52
1080 1116 1.731969 GCTCAACGTACGTCGCCTT 60.732 57.895 23.05 1.87 44.19 4.35
1122 1159 2.872028 CGCTGTTTGTGCTTGTTCC 58.128 52.632 0.00 0.00 0.00 3.62
1392 1429 0.779997 AGGTTTGTTCCTGGCTCCAT 59.220 50.000 0.00 0.00 36.35 3.41
1434 1471 6.808704 TGCTGTCATATCGAATAGTGCTAATC 59.191 38.462 0.00 0.00 0.00 1.75
1502 1552 9.312904 TCATGGATAAATTATGGAAGGGAATTC 57.687 33.333 0.00 0.00 37.17 2.17
1520 1570 6.350445 GGGAATTCTAGCAGCAATCTGAAAAA 60.350 38.462 5.23 0.00 42.95 1.94
1656 1707 3.010584 ACAGGCCATCACCAACTAATCTT 59.989 43.478 5.01 0.00 0.00 2.40
1740 1796 2.487986 CCCCTTCACTTTGAGTTGAGCT 60.488 50.000 0.00 0.00 0.00 4.09
1770 1826 6.151144 AGCATACAGTTTCCTACATTTCAACC 59.849 38.462 0.00 0.00 0.00 3.77
1829 1885 8.450578 TTGGGTTATGTGATCACTATTGAATC 57.549 34.615 25.55 12.33 34.61 2.52
1865 1921 4.367450 TGGCACTCATAGTTTGTTTTTGC 58.633 39.130 0.00 0.00 0.00 3.68
1866 1922 3.740832 GGCACTCATAGTTTGTTTTTGCC 59.259 43.478 0.00 0.00 0.00 4.52
1879 1935 1.401318 TTTTGCCTGGCTGTGTGCAT 61.401 50.000 21.03 0.00 45.15 3.96
1887 1943 2.153645 TGGCTGTGTGCATCTTAGTTG 58.846 47.619 0.00 0.00 45.15 3.16
1890 1946 2.666619 GCTGTGTGCATCTTAGTTGTGC 60.667 50.000 0.00 0.00 42.31 4.57
1900 1956 1.476845 TTAGTTGTGCAGAGGCCGGA 61.477 55.000 5.05 0.00 40.13 5.14
1902 1958 3.555324 TTGTGCAGAGGCCGGACA 61.555 61.111 11.69 0.00 40.13 4.02
1918 1974 2.098607 CGGACATTGCTCATCATGCTTT 59.901 45.455 0.00 0.00 0.00 3.51
1944 2000 6.882610 ATCCGCTTGATGCTATATTTTGAA 57.117 33.333 0.00 0.00 40.11 2.69
1975 2031 8.546597 AAAAATGTCCTTTATCGGGAAAAATG 57.453 30.769 0.00 0.00 34.35 2.32
1986 2042 2.752354 CGGGAAAAATGCATGGTACTCA 59.248 45.455 0.00 0.00 0.00 3.41
1987 2043 3.381272 CGGGAAAAATGCATGGTACTCAT 59.619 43.478 0.00 0.00 36.31 2.90
2040 2096 1.134521 ACACGAATATGTGATGGCGGT 60.135 47.619 0.24 0.00 42.55 5.68
2047 2103 5.591099 GAATATGTGATGGCGGTTCAATTT 58.409 37.500 0.00 0.00 0.00 1.82
2049 2105 1.959985 TGTGATGGCGGTTCAATTTGT 59.040 42.857 0.00 0.00 0.00 2.83
2053 2109 3.570125 TGATGGCGGTTCAATTTGTTGTA 59.430 39.130 0.00 0.00 0.00 2.41
2063 2119 7.402640 GGTTCAATTTGTTGTATTTCGCAAAA 58.597 30.769 0.00 0.00 34.99 2.44
2064 2120 7.905493 GGTTCAATTTGTTGTATTTCGCAAAAA 59.095 29.630 0.00 0.00 34.99 1.94
2065 2121 9.432077 GTTCAATTTGTTGTATTTCGCAAAAAT 57.568 25.926 0.00 0.36 34.99 1.82
2098 2154 7.270365 GGTTCAATTTGATGTACATACAACACG 59.730 37.037 8.71 6.06 38.46 4.49
2136 2192 7.861630 TGTACAGAATAACTTCAACTTTCTGC 58.138 34.615 10.08 0.00 44.44 4.26
2294 2350 3.306502 GGAACCAGTTCGTTCATGTCCTA 60.307 47.826 4.54 0.00 43.28 2.94
2466 2522 5.482878 ACTCCTGCCAATCAAATTCTTTCAT 59.517 36.000 0.00 0.00 0.00 2.57
2467 2523 5.726397 TCCTGCCAATCAAATTCTTTCATG 58.274 37.500 0.00 0.00 0.00 3.07
2468 2524 5.246656 TCCTGCCAATCAAATTCTTTCATGT 59.753 36.000 0.00 0.00 0.00 3.21
2469 2525 6.436847 TCCTGCCAATCAAATTCTTTCATGTA 59.563 34.615 0.00 0.00 0.00 2.29
2471 2527 8.415553 CCTGCCAATCAAATTCTTTCATGTATA 58.584 33.333 0.00 0.00 0.00 1.47
2472 2528 9.976511 CTGCCAATCAAATTCTTTCATGTATAT 57.023 29.630 0.00 0.00 0.00 0.86
2551 2627 5.012893 AGAGGGAAAGATTAAAGCAAGTGG 58.987 41.667 0.00 0.00 0.00 4.00
2693 2769 5.008217 ACACTACAATCGAGAGACTAGCATC 59.992 44.000 0.00 0.00 46.97 3.91
2695 2771 2.946329 ACAATCGAGAGACTAGCATCGT 59.054 45.455 0.00 0.00 46.97 3.73
2700 2776 2.353269 CGAGAGACTAGCATCGTCTGTT 59.647 50.000 7.21 0.00 41.53 3.16
2703 2779 3.127895 AGAGACTAGCATCGTCTGTTGAC 59.872 47.826 7.21 0.00 41.53 3.18
2836 2912 4.019501 ACATGAACCTCTCAGCTTCAAGAT 60.020 41.667 0.00 0.00 37.52 2.40
2842 2918 3.757493 CCTCTCAGCTTCAAGATTTTGCT 59.243 43.478 0.00 0.00 34.21 3.91
2968 3044 0.476771 AACCCAACACCCTGTCGATT 59.523 50.000 0.00 0.00 0.00 3.34
2997 3073 6.365520 TCCTCAGCTATGTGAGTCACTATTA 58.634 40.000 23.29 11.65 42.22 0.98
3887 3972 5.931441 ATGAAAGAGGAAAAGAGTTCACG 57.069 39.130 0.00 0.00 0.00 4.35
4087 4189 5.677852 GCAGTTGCATTGCTATCTGAATTCA 60.678 40.000 22.18 8.12 41.59 2.57
4091 4193 8.857098 AGTTGCATTGCTATCTGAATTCATTAT 58.143 29.630 8.96 8.45 0.00 1.28
4117 4219 6.346838 GGCATCTGTTTTGCATTTTAGTCAAC 60.347 38.462 0.00 0.00 41.95 3.18
4296 4420 3.364441 GCCACGATGCAAGCACCA 61.364 61.111 0.00 0.00 0.00 4.17
4377 4505 2.094675 CATTTGTCCCCTGGTAAGCAG 58.905 52.381 0.00 0.00 0.00 4.24
4423 4554 4.092675 GCAGGTCTCAATTTCTTCTCTTCG 59.907 45.833 0.00 0.00 0.00 3.79
4740 4874 2.820037 GCTAGCAAGGTCACGGCC 60.820 66.667 10.63 0.00 0.00 6.13
4770 4904 1.542915 TCCCTTGTCTACGAGAAACCG 59.457 52.381 0.00 0.00 0.00 4.44
4882 5017 5.083533 ACATGTCAAGATCTCCACTCTTC 57.916 43.478 0.00 0.00 30.60 2.87
4883 5018 4.776837 ACATGTCAAGATCTCCACTCTTCT 59.223 41.667 0.00 0.00 30.60 2.85
4884 5019 5.248020 ACATGTCAAGATCTCCACTCTTCTT 59.752 40.000 0.00 0.00 30.60 2.52
4885 5020 5.815233 TGTCAAGATCTCCACTCTTCTTT 57.185 39.130 0.00 0.00 30.60 2.52
4886 5021 5.545588 TGTCAAGATCTCCACTCTTCTTTG 58.454 41.667 0.00 0.00 30.60 2.77
4887 5022 4.391523 GTCAAGATCTCCACTCTTCTTTGC 59.608 45.833 0.00 0.00 30.60 3.68
4889 5024 2.564947 AGATCTCCACTCTTCTTTGCGT 59.435 45.455 0.00 0.00 0.00 5.24
4890 5025 3.764434 AGATCTCCACTCTTCTTTGCGTA 59.236 43.478 0.00 0.00 0.00 4.42
4892 5027 2.891580 TCTCCACTCTTCTTTGCGTAGT 59.108 45.455 0.00 0.00 0.00 2.73
4893 5028 2.989840 CTCCACTCTTCTTTGCGTAGTG 59.010 50.000 0.00 0.00 37.81 2.74
4926 5061 1.269723 TGACGGCTGTTACTGTGAGAG 59.730 52.381 0.00 0.00 0.00 3.20
5047 5198 0.946221 ACTTCAGCAGCTTCCGTTCG 60.946 55.000 0.00 0.00 0.00 3.95
5065 5216 1.014352 CGGTACTGCCATTGGTTAGC 58.986 55.000 4.26 2.94 36.97 3.09
5073 5226 6.699575 ACTGCCATTGGTTAGCTAATTAAG 57.300 37.500 9.88 2.60 0.00 1.85
5150 5304 3.254903 AGTTCGGCACTGTTTTTAATCCC 59.745 43.478 0.00 0.00 32.83 3.85
5151 5305 2.865079 TCGGCACTGTTTTTAATCCCA 58.135 42.857 0.00 0.00 0.00 4.37
5152 5306 3.426615 TCGGCACTGTTTTTAATCCCAT 58.573 40.909 0.00 0.00 0.00 4.00
5153 5307 3.192422 TCGGCACTGTTTTTAATCCCATG 59.808 43.478 0.00 0.00 0.00 3.66
5154 5308 3.056891 CGGCACTGTTTTTAATCCCATGT 60.057 43.478 0.00 0.00 0.00 3.21
5155 5309 4.244862 GGCACTGTTTTTAATCCCATGTG 58.755 43.478 0.00 0.00 0.00 3.21
5156 5310 4.021544 GGCACTGTTTTTAATCCCATGTGA 60.022 41.667 0.00 0.00 0.00 3.58
5157 5311 5.337491 GGCACTGTTTTTAATCCCATGTGAT 60.337 40.000 0.00 0.00 0.00 3.06
5158 5312 5.577945 GCACTGTTTTTAATCCCATGTGATG 59.422 40.000 0.00 0.00 0.00 3.07
5217 5437 3.442273 TGATCGGCACTGTTTTTAATCCC 59.558 43.478 0.00 0.00 0.00 3.85
5238 5481 2.196749 CGTGGTCAAGGATCAGAATCG 58.803 52.381 0.00 0.00 32.24 3.34
5258 5501 2.711542 GTGGAAGTTATGGTGGTGGAG 58.288 52.381 0.00 0.00 0.00 3.86
5336 5579 2.477825 CGCATAGTTCAGTCAGGATGG 58.522 52.381 0.00 0.00 36.16 3.51
5346 5589 1.918293 TCAGGATGGGTTGCCGTCT 60.918 57.895 0.00 0.00 36.16 4.18
5389 5634 2.862541 CAGAACAGATTTCCCACCACA 58.137 47.619 0.00 0.00 0.00 4.17
5395 5640 2.226437 CAGATTTCCCACCACAAGAACG 59.774 50.000 0.00 0.00 0.00 3.95
5398 5643 0.834612 TTCCCACCACAAGAACGTCT 59.165 50.000 0.00 0.00 0.00 4.18
5403 5648 1.792949 CACCACAAGAACGTCTACAGC 59.207 52.381 0.00 0.00 0.00 4.40
5518 5808 4.056050 ACCAAAGTCGTAGCACTTACTTG 58.944 43.478 0.00 0.00 35.45 3.16
5674 6016 1.027357 CAACTCAAGGCAACAGCAGT 58.973 50.000 0.00 0.00 41.41 4.40
5712 6137 0.456312 GAGTACAACAGAGACGCCGG 60.456 60.000 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.567615 ACGGAGCTGACTAGTTGGATTT 59.432 45.455 0.00 0.00 0.00 2.17
37 38 0.888619 CACGGAGCTGACTAGTTGGA 59.111 55.000 0.00 0.00 0.00 3.53
38 39 0.108615 CCACGGAGCTGACTAGTTGG 60.109 60.000 0.00 0.00 0.00 3.77
232 238 1.545582 CACCCCACTTTAGCACCAATG 59.454 52.381 0.00 0.00 0.00 2.82
233 239 1.923356 CACCCCACTTTAGCACCAAT 58.077 50.000 0.00 0.00 0.00 3.16
234 240 0.825840 GCACCCCACTTTAGCACCAA 60.826 55.000 0.00 0.00 0.00 3.67
235 241 1.228429 GCACCCCACTTTAGCACCA 60.228 57.895 0.00 0.00 0.00 4.17
236 242 0.326927 TAGCACCCCACTTTAGCACC 59.673 55.000 0.00 0.00 0.00 5.01
237 243 2.084546 CTTAGCACCCCACTTTAGCAC 58.915 52.381 0.00 0.00 0.00 4.40
238 244 1.702957 ACTTAGCACCCCACTTTAGCA 59.297 47.619 0.00 0.00 0.00 3.49
239 245 2.084546 CACTTAGCACCCCACTTTAGC 58.915 52.381 0.00 0.00 0.00 3.09
240 246 2.084546 GCACTTAGCACCCCACTTTAG 58.915 52.381 0.00 0.00 44.79 1.85
241 247 2.194201 GCACTTAGCACCCCACTTTA 57.806 50.000 0.00 0.00 44.79 1.85
242 248 3.036431 GCACTTAGCACCCCACTTT 57.964 52.632 0.00 0.00 44.79 2.66
243 249 4.821935 GCACTTAGCACCCCACTT 57.178 55.556 0.00 0.00 44.79 3.16
262 268 8.691797 GGGGACATTAGTTGATAAGCATTTTAA 58.308 33.333 0.00 0.00 0.00 1.52
263 269 7.836685 TGGGGACATTAGTTGATAAGCATTTTA 59.163 33.333 0.00 0.00 33.40 1.52
264 270 6.667414 TGGGGACATTAGTTGATAAGCATTTT 59.333 34.615 0.00 0.00 33.40 1.82
265 271 6.194235 TGGGGACATTAGTTGATAAGCATTT 58.806 36.000 0.00 0.00 33.40 2.32
266 272 5.765510 TGGGGACATTAGTTGATAAGCATT 58.234 37.500 0.00 0.00 33.40 3.56
267 273 5.387113 TGGGGACATTAGTTGATAAGCAT 57.613 39.130 0.00 0.00 33.40 3.79
268 274 4.853468 TGGGGACATTAGTTGATAAGCA 57.147 40.909 0.00 0.00 33.40 3.91
269 275 5.507985 GCATTGGGGACATTAGTTGATAAGC 60.508 44.000 0.00 0.00 42.32 3.09
270 276 5.593909 TGCATTGGGGACATTAGTTGATAAG 59.406 40.000 0.00 0.00 42.32 1.73
271 277 5.514169 TGCATTGGGGACATTAGTTGATAA 58.486 37.500 0.00 0.00 42.32 1.75
272 278 5.122707 TGCATTGGGGACATTAGTTGATA 57.877 39.130 0.00 0.00 42.32 2.15
273 279 3.979911 TGCATTGGGGACATTAGTTGAT 58.020 40.909 0.00 0.00 42.32 2.57
274 280 3.448093 TGCATTGGGGACATTAGTTGA 57.552 42.857 0.00 0.00 42.32 3.18
275 281 4.435425 CAATGCATTGGGGACATTAGTTG 58.565 43.478 28.34 2.10 42.32 3.16
276 282 4.741321 CAATGCATTGGGGACATTAGTT 57.259 40.909 28.34 0.00 42.32 2.24
293 299 4.218417 AGCTACAAAACCTAAGCACCAATG 59.782 41.667 0.00 0.00 37.44 2.82
294 300 4.407365 AGCTACAAAACCTAAGCACCAAT 58.593 39.130 0.00 0.00 37.44 3.16
295 301 3.827722 AGCTACAAAACCTAAGCACCAA 58.172 40.909 0.00 0.00 37.44 3.67
296 302 3.502123 AGCTACAAAACCTAAGCACCA 57.498 42.857 0.00 0.00 37.44 4.17
297 303 5.547181 CTTAGCTACAAAACCTAAGCACC 57.453 43.478 0.00 0.00 37.44 5.01
301 307 4.876679 GGAGGCTTAGCTACAAAACCTAAG 59.123 45.833 3.59 0.00 40.44 2.18
302 308 4.534897 AGGAGGCTTAGCTACAAAACCTAA 59.465 41.667 3.59 0.00 0.00 2.69
303 309 4.101856 AGGAGGCTTAGCTACAAAACCTA 58.898 43.478 3.59 0.00 0.00 3.08
304 310 2.913617 AGGAGGCTTAGCTACAAAACCT 59.086 45.455 3.59 0.00 0.00 3.50
305 311 3.351794 AGGAGGCTTAGCTACAAAACC 57.648 47.619 3.59 0.00 0.00 3.27
306 312 7.392494 AATAAAGGAGGCTTAGCTACAAAAC 57.608 36.000 3.59 0.00 0.00 2.43
307 313 9.523168 TTAAATAAAGGAGGCTTAGCTACAAAA 57.477 29.630 3.59 0.00 0.00 2.44
308 314 9.695155 ATTAAATAAAGGAGGCTTAGCTACAAA 57.305 29.630 3.59 0.00 0.00 2.83
309 315 9.695155 AATTAAATAAAGGAGGCTTAGCTACAA 57.305 29.630 3.59 0.00 0.00 2.41
310 316 9.120538 CAATTAAATAAAGGAGGCTTAGCTACA 57.879 33.333 3.59 0.00 0.00 2.74
311 317 9.121658 ACAATTAAATAAAGGAGGCTTAGCTAC 57.878 33.333 3.59 0.00 0.00 3.58
312 318 9.695155 AACAATTAAATAAAGGAGGCTTAGCTA 57.305 29.630 3.59 0.00 0.00 3.32
313 319 8.595362 AACAATTAAATAAAGGAGGCTTAGCT 57.405 30.769 3.59 0.00 0.00 3.32
343 349 8.531146 CCAACCAATACATGAAGGAGTTTTAAT 58.469 33.333 0.00 0.00 0.00 1.40
344 350 7.507616 ACCAACCAATACATGAAGGAGTTTTAA 59.492 33.333 0.00 0.00 0.00 1.52
345 351 7.007723 ACCAACCAATACATGAAGGAGTTTTA 58.992 34.615 0.00 0.00 0.00 1.52
346 352 5.838521 ACCAACCAATACATGAAGGAGTTTT 59.161 36.000 0.00 0.00 0.00 2.43
347 353 5.393866 ACCAACCAATACATGAAGGAGTTT 58.606 37.500 0.00 0.00 0.00 2.66
348 354 4.998051 ACCAACCAATACATGAAGGAGTT 58.002 39.130 0.00 0.00 0.00 3.01
349 355 4.657814 ACCAACCAATACATGAAGGAGT 57.342 40.909 0.00 0.00 0.00 3.85
350 356 5.745227 ACTACCAACCAATACATGAAGGAG 58.255 41.667 0.00 0.00 0.00 3.69
351 357 5.487488 AGACTACCAACCAATACATGAAGGA 59.513 40.000 0.00 0.00 0.00 3.36
352 358 5.745227 AGACTACCAACCAATACATGAAGG 58.255 41.667 0.00 0.00 0.00 3.46
353 359 7.687941 AAAGACTACCAACCAATACATGAAG 57.312 36.000 0.00 0.00 0.00 3.02
354 360 8.356657 CAAAAAGACTACCAACCAATACATGAA 58.643 33.333 0.00 0.00 0.00 2.57
355 361 7.504238 ACAAAAAGACTACCAACCAATACATGA 59.496 33.333 0.00 0.00 0.00 3.07
356 362 7.657336 ACAAAAAGACTACCAACCAATACATG 58.343 34.615 0.00 0.00 0.00 3.21
357 363 7.724061 AGACAAAAAGACTACCAACCAATACAT 59.276 33.333 0.00 0.00 0.00 2.29
358 364 7.057894 AGACAAAAAGACTACCAACCAATACA 58.942 34.615 0.00 0.00 0.00 2.29
359 365 7.506328 AGACAAAAAGACTACCAACCAATAC 57.494 36.000 0.00 0.00 0.00 1.89
360 366 7.881232 CCTAGACAAAAAGACTACCAACCAATA 59.119 37.037 0.00 0.00 0.00 1.90
361 367 6.715264 CCTAGACAAAAAGACTACCAACCAAT 59.285 38.462 0.00 0.00 0.00 3.16
362 368 6.059484 CCTAGACAAAAAGACTACCAACCAA 58.941 40.000 0.00 0.00 0.00 3.67
363 369 5.131475 ACCTAGACAAAAAGACTACCAACCA 59.869 40.000 0.00 0.00 0.00 3.67
364 370 5.618236 ACCTAGACAAAAAGACTACCAACC 58.382 41.667 0.00 0.00 0.00 3.77
365 371 6.764560 TGAACCTAGACAAAAAGACTACCAAC 59.235 38.462 0.00 0.00 0.00 3.77
366 372 6.764560 GTGAACCTAGACAAAAAGACTACCAA 59.235 38.462 0.00 0.00 0.00 3.67
367 373 6.285990 GTGAACCTAGACAAAAAGACTACCA 58.714 40.000 0.00 0.00 0.00 3.25
368 374 5.404667 CGTGAACCTAGACAAAAAGACTACC 59.595 44.000 0.00 0.00 0.00 3.18
369 375 5.981915 ACGTGAACCTAGACAAAAAGACTAC 59.018 40.000 0.00 0.00 0.00 2.73
370 376 6.152932 ACGTGAACCTAGACAAAAAGACTA 57.847 37.500 0.00 0.00 0.00 2.59
371 377 5.019785 ACGTGAACCTAGACAAAAAGACT 57.980 39.130 0.00 0.00 0.00 3.24
372 378 5.981915 AGTACGTGAACCTAGACAAAAAGAC 59.018 40.000 0.00 0.00 0.00 3.01
373 379 6.152932 AGTACGTGAACCTAGACAAAAAGA 57.847 37.500 0.00 0.00 0.00 2.52
374 380 6.839820 AAGTACGTGAACCTAGACAAAAAG 57.160 37.500 0.00 0.00 0.00 2.27
375 381 6.421801 GCTAAGTACGTGAACCTAGACAAAAA 59.578 38.462 0.00 0.00 0.00 1.94
376 382 5.922544 GCTAAGTACGTGAACCTAGACAAAA 59.077 40.000 0.00 0.00 0.00 2.44
377 383 5.009911 TGCTAAGTACGTGAACCTAGACAAA 59.990 40.000 0.00 0.00 0.00 2.83
378 384 4.520111 TGCTAAGTACGTGAACCTAGACAA 59.480 41.667 0.00 0.00 0.00 3.18
379 385 4.074259 TGCTAAGTACGTGAACCTAGACA 58.926 43.478 0.00 0.00 0.00 3.41
380 386 4.691860 TGCTAAGTACGTGAACCTAGAC 57.308 45.455 0.00 0.00 0.00 2.59
381 387 5.393787 CCAATGCTAAGTACGTGAACCTAGA 60.394 44.000 0.00 0.00 0.00 2.43
382 388 4.804139 CCAATGCTAAGTACGTGAACCTAG 59.196 45.833 0.00 0.00 0.00 3.02
383 389 4.221262 ACCAATGCTAAGTACGTGAACCTA 59.779 41.667 0.00 0.00 0.00 3.08
384 390 3.007614 ACCAATGCTAAGTACGTGAACCT 59.992 43.478 0.00 0.00 0.00 3.50
385 391 3.332034 ACCAATGCTAAGTACGTGAACC 58.668 45.455 0.00 0.00 0.00 3.62
386 392 4.212636 ACAACCAATGCTAAGTACGTGAAC 59.787 41.667 0.00 0.00 0.00 3.18
387 393 4.382291 ACAACCAATGCTAAGTACGTGAA 58.618 39.130 0.00 0.00 0.00 3.18
388 394 3.997762 ACAACCAATGCTAAGTACGTGA 58.002 40.909 0.00 0.00 0.00 4.35
389 395 4.742438 AACAACCAATGCTAAGTACGTG 57.258 40.909 0.00 0.00 0.00 4.49
390 396 6.128117 CCAATAACAACCAATGCTAAGTACGT 60.128 38.462 0.00 0.00 0.00 3.57
391 397 6.255215 CCAATAACAACCAATGCTAAGTACG 58.745 40.000 0.00 0.00 0.00 3.67
392 398 6.405397 CCCCAATAACAACCAATGCTAAGTAC 60.405 42.308 0.00 0.00 0.00 2.73
393 399 5.654650 CCCCAATAACAACCAATGCTAAGTA 59.345 40.000 0.00 0.00 0.00 2.24
394 400 4.466015 CCCCAATAACAACCAATGCTAAGT 59.534 41.667 0.00 0.00 0.00 2.24
395 401 4.466015 ACCCCAATAACAACCAATGCTAAG 59.534 41.667 0.00 0.00 0.00 2.18
396 402 4.421131 ACCCCAATAACAACCAATGCTAA 58.579 39.130 0.00 0.00 0.00 3.09
397 403 4.020543 GACCCCAATAACAACCAATGCTA 58.979 43.478 0.00 0.00 0.00 3.49
398 404 2.831526 GACCCCAATAACAACCAATGCT 59.168 45.455 0.00 0.00 0.00 3.79
399 405 2.564947 TGACCCCAATAACAACCAATGC 59.435 45.455 0.00 0.00 0.00 3.56
400 406 3.056179 GGTGACCCCAATAACAACCAATG 60.056 47.826 0.00 0.00 0.00 2.82
401 407 3.169908 GGTGACCCCAATAACAACCAAT 58.830 45.455 0.00 0.00 0.00 3.16
402 408 2.091278 TGGTGACCCCAATAACAACCAA 60.091 45.455 0.00 0.00 41.50 3.67
403 409 1.499438 TGGTGACCCCAATAACAACCA 59.501 47.619 0.00 0.00 41.50 3.67
404 410 2.296073 TGGTGACCCCAATAACAACC 57.704 50.000 0.00 0.00 41.50 3.77
414 420 1.771255 AGAGAGCATTATGGTGACCCC 59.229 52.381 0.19 0.00 0.00 4.95
415 421 2.703007 AGAGAGAGCATTATGGTGACCC 59.297 50.000 0.19 0.00 0.00 4.46
416 422 3.244044 GGAGAGAGAGCATTATGGTGACC 60.244 52.174 0.19 0.00 0.00 4.02
417 423 3.640967 AGGAGAGAGAGCATTATGGTGAC 59.359 47.826 0.19 0.00 0.00 3.67
418 424 3.894427 GAGGAGAGAGAGCATTATGGTGA 59.106 47.826 0.19 0.00 0.00 4.02
419 425 3.896888 AGAGGAGAGAGAGCATTATGGTG 59.103 47.826 0.19 0.00 0.00 4.17
420 426 4.197559 AGAGGAGAGAGAGCATTATGGT 57.802 45.455 0.00 0.00 0.00 3.55
421 427 5.549742 AAAGAGGAGAGAGAGCATTATGG 57.450 43.478 0.00 0.00 0.00 2.74
422 428 8.991026 CAATTAAAGAGGAGAGAGAGCATTATG 58.009 37.037 0.00 0.00 0.00 1.90
423 429 8.713036 ACAATTAAAGAGGAGAGAGAGCATTAT 58.287 33.333 0.00 0.00 0.00 1.28
424 430 8.083828 ACAATTAAAGAGGAGAGAGAGCATTA 57.916 34.615 0.00 0.00 0.00 1.90
425 431 6.956497 ACAATTAAAGAGGAGAGAGAGCATT 58.044 36.000 0.00 0.00 0.00 3.56
426 432 6.558488 ACAATTAAAGAGGAGAGAGAGCAT 57.442 37.500 0.00 0.00 0.00 3.79
427 433 6.365970 AACAATTAAAGAGGAGAGAGAGCA 57.634 37.500 0.00 0.00 0.00 4.26
428 434 7.984617 ACATAACAATTAAAGAGGAGAGAGAGC 59.015 37.037 0.00 0.00 0.00 4.09
429 435 9.528018 GACATAACAATTAAAGAGGAGAGAGAG 57.472 37.037 0.00 0.00 0.00 3.20
430 436 9.035890 TGACATAACAATTAAAGAGGAGAGAGA 57.964 33.333 0.00 0.00 0.00 3.10
431 437 9.092876 GTGACATAACAATTAAAGAGGAGAGAG 57.907 37.037 0.00 0.00 0.00 3.20
432 438 8.593679 TGTGACATAACAATTAAAGAGGAGAGA 58.406 33.333 0.00 0.00 0.00 3.10
433 439 8.777865 TGTGACATAACAATTAAAGAGGAGAG 57.222 34.615 0.00 0.00 0.00 3.20
434 440 9.739276 AATGTGACATAACAATTAAAGAGGAGA 57.261 29.630 0.00 0.00 32.81 3.71
445 451 9.369904 GGCAGAAAAATAATGTGACATAACAAT 57.630 29.630 0.00 0.00 32.81 2.71
446 452 8.584157 AGGCAGAAAAATAATGTGACATAACAA 58.416 29.630 0.00 0.00 32.81 2.83
447 453 8.121305 AGGCAGAAAAATAATGTGACATAACA 57.879 30.769 0.00 0.00 0.00 2.41
450 456 9.407380 ACATAGGCAGAAAAATAATGTGACATA 57.593 29.630 0.00 0.00 0.00 2.29
451 457 8.192774 CACATAGGCAGAAAAATAATGTGACAT 58.807 33.333 6.69 0.00 43.28 3.06
452 458 7.362834 CCACATAGGCAGAAAAATAATGTGACA 60.363 37.037 12.71 0.00 43.28 3.58
453 459 6.974622 CCACATAGGCAGAAAAATAATGTGAC 59.025 38.462 12.71 0.00 43.28 3.67
454 460 7.099266 CCACATAGGCAGAAAAATAATGTGA 57.901 36.000 12.71 0.00 43.28 3.58
470 476 2.418368 TGCTAAAGGTGCCACATAGG 57.582 50.000 0.00 0.00 41.84 2.57
471 477 3.562973 CAGATGCTAAAGGTGCCACATAG 59.437 47.826 0.00 0.00 0.00 2.23
472 478 3.054434 ACAGATGCTAAAGGTGCCACATA 60.054 43.478 0.00 0.00 0.00 2.29
473 479 2.291153 ACAGATGCTAAAGGTGCCACAT 60.291 45.455 0.00 0.00 0.00 3.21
474 480 1.073763 ACAGATGCTAAAGGTGCCACA 59.926 47.619 0.00 0.00 0.00 4.17
475 481 1.826385 ACAGATGCTAAAGGTGCCAC 58.174 50.000 0.00 0.00 0.00 5.01
476 482 2.304470 TGTACAGATGCTAAAGGTGCCA 59.696 45.455 0.00 0.00 0.00 4.92
477 483 2.678336 GTGTACAGATGCTAAAGGTGCC 59.322 50.000 0.00 0.00 0.00 5.01
478 484 2.678336 GGTGTACAGATGCTAAAGGTGC 59.322 50.000 0.00 0.00 0.00 5.01
479 485 2.930040 CGGTGTACAGATGCTAAAGGTG 59.070 50.000 0.00 0.00 0.00 4.00
480 486 2.565834 ACGGTGTACAGATGCTAAAGGT 59.434 45.455 0.00 0.00 0.00 3.50
481 487 2.930040 CACGGTGTACAGATGCTAAAGG 59.070 50.000 0.00 0.00 0.00 3.11
482 488 2.930040 CCACGGTGTACAGATGCTAAAG 59.070 50.000 7.45 0.00 0.00 1.85
483 489 2.563620 TCCACGGTGTACAGATGCTAAA 59.436 45.455 7.45 0.00 0.00 1.85
484 490 2.165641 CTCCACGGTGTACAGATGCTAA 59.834 50.000 7.45 0.00 0.00 3.09
485 491 1.749063 CTCCACGGTGTACAGATGCTA 59.251 52.381 7.45 0.00 0.00 3.49
486 492 0.532573 CTCCACGGTGTACAGATGCT 59.467 55.000 7.45 0.00 0.00 3.79
487 493 1.084370 GCTCCACGGTGTACAGATGC 61.084 60.000 7.45 0.39 0.00 3.91
488 494 0.246360 TGCTCCACGGTGTACAGATG 59.754 55.000 7.45 0.00 0.00 2.90
489 495 0.246635 GTGCTCCACGGTGTACAGAT 59.753 55.000 7.45 0.00 0.00 2.90
490 496 0.826256 AGTGCTCCACGGTGTACAGA 60.826 55.000 7.45 0.00 39.64 3.41
491 497 0.885879 TAGTGCTCCACGGTGTACAG 59.114 55.000 7.45 1.33 39.64 2.74
492 498 0.885879 CTAGTGCTCCACGGTGTACA 59.114 55.000 7.45 0.00 39.64 2.90
493 499 0.172803 CCTAGTGCTCCACGGTGTAC 59.827 60.000 7.45 0.00 39.64 2.90
494 500 0.038599 TCCTAGTGCTCCACGGTGTA 59.961 55.000 7.45 0.00 39.64 2.90
495 501 0.830444 TTCCTAGTGCTCCACGGTGT 60.830 55.000 7.45 0.00 39.64 4.16
496 502 0.108615 CTTCCTAGTGCTCCACGGTG 60.109 60.000 0.00 0.00 39.64 4.94
497 503 1.258445 CCTTCCTAGTGCTCCACGGT 61.258 60.000 0.00 0.00 39.64 4.83
498 504 1.517832 CCTTCCTAGTGCTCCACGG 59.482 63.158 0.00 0.00 39.64 4.94
499 505 1.517832 CCCTTCCTAGTGCTCCACG 59.482 63.158 0.00 0.00 39.64 4.94
500 506 1.222113 GCCCTTCCTAGTGCTCCAC 59.778 63.158 0.00 0.00 34.10 4.02
501 507 1.995626 GGCCCTTCCTAGTGCTCCA 60.996 63.158 0.00 0.00 0.00 3.86
502 508 0.398664 TAGGCCCTTCCTAGTGCTCC 60.399 60.000 0.00 0.00 45.41 4.70
503 509 3.225608 TAGGCCCTTCCTAGTGCTC 57.774 57.895 0.00 0.00 45.41 4.26
509 515 2.628829 GGAGGTCTTTAGGCCCTTCCTA 60.629 54.545 0.00 0.00 45.41 2.94
511 517 0.547075 GGAGGTCTTTAGGCCCTTCC 59.453 60.000 0.00 0.00 0.00 3.46
512 518 0.178301 CGGAGGTCTTTAGGCCCTTC 59.822 60.000 0.00 0.00 0.00 3.46
513 519 1.911702 GCGGAGGTCTTTAGGCCCTT 61.912 60.000 0.00 0.00 0.00 3.95
514 520 2.368011 GCGGAGGTCTTTAGGCCCT 61.368 63.158 0.00 0.00 0.00 5.19
515 521 1.047034 TAGCGGAGGTCTTTAGGCCC 61.047 60.000 0.00 0.00 40.68 5.80
516 522 0.828677 TTAGCGGAGGTCTTTAGGCC 59.171 55.000 0.00 0.00 40.68 5.19
517 523 1.801765 CGTTAGCGGAGGTCTTTAGGC 60.802 57.143 0.00 0.00 40.68 3.93
518 524 1.475682 ACGTTAGCGGAGGTCTTTAGG 59.524 52.381 3.45 0.00 43.45 2.69
519 525 2.422832 AGACGTTAGCGGAGGTCTTTAG 59.577 50.000 3.45 0.00 40.71 1.85
780 811 1.153823 CTTACCTCTCGGTGCGGTG 60.154 63.158 2.18 0.00 45.18 4.94
847 878 2.202851 AGCGAGCAAGCAGATCCG 60.203 61.111 6.21 0.00 40.15 4.18
910 941 2.412112 GACGGGGAGACGGAATCG 59.588 66.667 0.00 0.00 43.02 3.34
1053 1089 0.099082 GTACGTTGAGCTCGAGGAGG 59.901 60.000 26.58 12.47 0.00 4.30
1392 1429 4.856509 ACAGCATACTACACTAGTGGAGA 58.143 43.478 36.66 22.09 44.32 3.71
1434 1471 7.651808 TCTTTTCTTTTCACTTGCTAGGAATG 58.348 34.615 0.00 0.00 0.00 2.67
1446 1483 9.561270 GCACTATTATCCTTCTTTTCTTTTCAC 57.439 33.333 0.00 0.00 0.00 3.18
1477 1514 9.317827 AGAATTCCCTTCCATAATTTATCCATG 57.682 33.333 0.65 0.00 34.11 3.66
1502 1552 4.561606 GTGCATTTTTCAGATTGCTGCTAG 59.438 41.667 0.00 0.00 42.01 3.42
1520 1570 5.242795 AGAGGGTACAAAACTAAGTGCAT 57.757 39.130 0.00 0.00 0.00 3.96
1572 1623 2.859165 TTGTCCCTTCCAGCAGTAAG 57.141 50.000 0.00 0.00 0.00 2.34
1609 1660 5.426504 ACTGTCAATTGCTTCCTCTATCAG 58.573 41.667 0.00 0.00 0.00 2.90
1656 1707 7.972832 ACACATTAGTAAGAACGGAATGAAA 57.027 32.000 10.96 0.00 37.31 2.69
1770 1826 8.668510 ATTCTAGTTACAATGGCTGTAGAATG 57.331 34.615 8.44 0.00 41.57 2.67
1829 1885 2.810274 GAGTGCCATGCATATACAGTGG 59.190 50.000 0.00 0.00 41.91 4.00
1865 1921 1.339438 ACTAAGATGCACACAGCCAGG 60.339 52.381 0.00 0.00 44.83 4.45
1866 1922 2.105006 ACTAAGATGCACACAGCCAG 57.895 50.000 0.00 0.00 44.83 4.85
1879 1935 0.037326 CGGCCTCTGCACAACTAAGA 60.037 55.000 0.00 0.00 40.13 2.10
1887 1943 2.045926 AATGTCCGGCCTCTGCAC 60.046 61.111 0.00 0.00 40.13 4.57
1890 1946 1.817099 GAGCAATGTCCGGCCTCTG 60.817 63.158 0.00 0.00 0.00 3.35
1900 1956 5.221185 GGATACAAAGCATGATGAGCAATGT 60.221 40.000 0.00 0.00 37.06 2.71
1902 1958 4.023450 CGGATACAAAGCATGATGAGCAAT 60.023 41.667 0.00 0.00 0.00 3.56
1944 2000 8.760980 TCCCGATAAAGGACATTTTTATTGAT 57.239 30.769 0.00 0.00 35.37 2.57
1967 2023 7.864379 CAGATTATGAGTACCATGCATTTTTCC 59.136 37.037 0.00 0.00 36.71 3.13
1975 2031 7.969536 ATACAACAGATTATGAGTACCATGC 57.030 36.000 6.99 0.00 36.71 4.06
2014 2070 5.529791 GCCATCACATATTCGTGTAGTAGT 58.470 41.667 0.00 0.00 38.12 2.73
2023 2079 2.209273 TGAACCGCCATCACATATTCG 58.791 47.619 0.00 0.00 0.00 3.34
2081 2137 4.450082 AGAGCGTGTTGTATGTACATCA 57.550 40.909 12.68 7.70 35.89 3.07
2098 2154 3.032017 TCTGTACAGCAGTTCAAGAGC 57.968 47.619 18.45 0.00 45.23 4.09
2122 2178 4.889409 TGAATTCCAGCAGAAAGTTGAAGT 59.111 37.500 2.27 0.00 38.21 3.01
2136 2192 3.942829 TCAGTTACAGCCTGAATTCCAG 58.057 45.455 0.00 0.71 42.55 3.86
2466 2522 7.661437 ACTGAACAAAAAGAGCACTGATATACA 59.339 33.333 0.00 0.00 0.00 2.29
2467 2523 7.959651 CACTGAACAAAAAGAGCACTGATATAC 59.040 37.037 0.00 0.00 0.00 1.47
2468 2524 7.361201 GCACTGAACAAAAAGAGCACTGATATA 60.361 37.037 0.00 0.00 31.29 0.86
2469 2525 6.569226 GCACTGAACAAAAAGAGCACTGATAT 60.569 38.462 0.00 0.00 31.29 1.63
2471 2527 4.498682 GCACTGAACAAAAAGAGCACTGAT 60.499 41.667 0.00 0.00 31.29 2.90
2472 2528 3.181497 GCACTGAACAAAAAGAGCACTGA 60.181 43.478 0.00 0.00 31.29 3.41
2551 2627 7.489113 GGAATGTAATGTGTTCAAATGATCCAC 59.511 37.037 0.00 6.73 0.00 4.02
2700 2776 8.616942 TGAATTTTTATTTCACGAAGTCTGTCA 58.383 29.630 0.00 0.00 41.61 3.58
2703 2779 9.322776 CTCTGAATTTTTATTTCACGAAGTCTG 57.677 33.333 0.00 0.00 41.61 3.51
2778 2854 0.592637 TTGAGTTCAGGCATGCAACG 59.407 50.000 21.36 6.97 0.00 4.10
2786 2862 4.633565 CAGAGTTAAGGATTGAGTTCAGGC 59.366 45.833 0.00 0.00 0.00 4.85
2836 2912 4.515191 AGTTCTAGCATTGTCGAAGCAAAA 59.485 37.500 0.00 0.00 31.63 2.44
2842 2918 5.592104 TCCATAGTTCTAGCATTGTCGAA 57.408 39.130 0.00 0.00 0.00 3.71
2890 2966 3.430042 ACATTCTGGAACATCTGCTGT 57.570 42.857 0.00 0.00 40.84 4.40
2968 3044 3.435275 ACTCACATAGCTGAGGAAGTCA 58.565 45.455 0.00 0.00 41.89 3.41
3767 3851 7.816640 TGAAGTGATAACAGAAACAATAAGGC 58.183 34.615 0.00 0.00 0.00 4.35
3801 3885 5.083122 TCCTGCCCAAAGTGAATAAAATGA 58.917 37.500 0.00 0.00 0.00 2.57
3814 3898 2.311542 ACATCTACCATTCCTGCCCAAA 59.688 45.455 0.00 0.00 0.00 3.28
3887 3972 8.027189 TCAGTAAATAGACATACGCCATCATAC 58.973 37.037 0.00 0.00 0.00 2.39
4087 4189 8.042515 ACTAAAATGCAAAACAGATGCCATAAT 58.957 29.630 0.00 0.00 43.16 1.28
4091 4193 5.212532 ACTAAAATGCAAAACAGATGCCA 57.787 34.783 0.00 0.00 43.16 4.92
4185 4302 2.238521 GATGGACTTGGCTTTGAACCA 58.761 47.619 0.00 0.00 34.65 3.67
4296 4420 7.669427 TCTTGGAATGCAATATGTCTGTTTTT 58.331 30.769 0.00 0.00 0.00 1.94
4377 4505 2.736670 ACATGAAACCTGATAGGGGC 57.263 50.000 0.00 0.00 40.58 5.80
4423 4554 4.455533 TGTTCACATGCATCAGAGGTTTAC 59.544 41.667 0.00 0.00 0.00 2.01
4689 4823 2.437359 GCCAACTGCATCGGAGCT 60.437 61.111 0.00 0.00 40.77 4.09
4740 4874 1.216710 GACAAGGGAGACAGGAGCG 59.783 63.158 0.00 0.00 0.00 5.03
4882 5017 4.279659 GTTTCCAACTTCACTACGCAAAG 58.720 43.478 0.00 0.00 0.00 2.77
4883 5018 3.065648 GGTTTCCAACTTCACTACGCAAA 59.934 43.478 0.00 0.00 0.00 3.68
4884 5019 2.614983 GGTTTCCAACTTCACTACGCAA 59.385 45.455 0.00 0.00 0.00 4.85
4885 5020 2.158871 AGGTTTCCAACTTCACTACGCA 60.159 45.455 0.00 0.00 0.00 5.24
4886 5021 2.223377 CAGGTTTCCAACTTCACTACGC 59.777 50.000 0.00 0.00 0.00 4.42
4887 5022 3.493503 GTCAGGTTTCCAACTTCACTACG 59.506 47.826 0.00 0.00 0.00 3.51
4889 5024 3.493699 CCGTCAGGTTTCCAACTTCACTA 60.494 47.826 0.00 0.00 0.00 2.74
4890 5025 2.561569 CGTCAGGTTTCCAACTTCACT 58.438 47.619 0.00 0.00 0.00 3.41
4892 5027 1.961793 CCGTCAGGTTTCCAACTTCA 58.038 50.000 0.00 0.00 0.00 3.02
4893 5028 0.591659 GCCGTCAGGTTTCCAACTTC 59.408 55.000 0.00 0.00 40.50 3.01
4926 5061 2.208431 CAACATAGGCAGCAGCTAGTC 58.792 52.381 0.00 0.00 41.70 2.59
5047 5198 2.420058 AGCTAACCAATGGCAGTACC 57.580 50.000 0.00 0.00 38.13 3.34
5073 5226 4.873827 TGCCGACAAAGAAACCTATACATC 59.126 41.667 0.00 0.00 0.00 3.06
5090 5243 2.621338 TCAAGATGATTCAGTGCCGAC 58.379 47.619 0.00 0.00 0.00 4.79
5130 5283 3.223435 TGGGATTAAAAACAGTGCCGAA 58.777 40.909 0.00 0.00 0.00 4.30
5150 5304 5.520288 CGAGTAAGAAACCTACCATCACATG 59.480 44.000 0.00 0.00 0.00 3.21
5151 5305 5.395324 CCGAGTAAGAAACCTACCATCACAT 60.395 44.000 0.00 0.00 0.00 3.21
5152 5306 4.081862 CCGAGTAAGAAACCTACCATCACA 60.082 45.833 0.00 0.00 0.00 3.58
5153 5307 4.430908 CCGAGTAAGAAACCTACCATCAC 58.569 47.826 0.00 0.00 0.00 3.06
5154 5308 3.118884 GCCGAGTAAGAAACCTACCATCA 60.119 47.826 0.00 0.00 0.00 3.07
5155 5309 3.118884 TGCCGAGTAAGAAACCTACCATC 60.119 47.826 0.00 0.00 0.00 3.51
5156 5310 2.835764 TGCCGAGTAAGAAACCTACCAT 59.164 45.455 0.00 0.00 0.00 3.55
5157 5311 2.028748 GTGCCGAGTAAGAAACCTACCA 60.029 50.000 0.00 0.00 0.00 3.25
5158 5312 2.233186 AGTGCCGAGTAAGAAACCTACC 59.767 50.000 0.00 0.00 0.00 3.18
5160 5314 3.159472 TCAGTGCCGAGTAAGAAACCTA 58.841 45.455 0.00 0.00 0.00 3.08
5161 5315 1.968493 TCAGTGCCGAGTAAGAAACCT 59.032 47.619 0.00 0.00 0.00 3.50
5217 5437 2.555199 GATTCTGATCCTTGACCACGG 58.445 52.381 0.00 0.00 0.00 4.94
5238 5481 2.039879 ACTCCACCACCATAACTTCCAC 59.960 50.000 0.00 0.00 0.00 4.02
5258 5501 2.099756 AGCTTGCACTTCCAGAAACAAC 59.900 45.455 0.00 0.00 0.00 3.32
5336 5579 2.351350 CCATTAAACACAGACGGCAACC 60.351 50.000 0.00 0.00 0.00 3.77
5346 5589 3.063316 CGTCGATGATGCCATTAAACACA 59.937 43.478 0.00 0.00 32.09 3.72
5389 5634 0.969894 AGCCAGCTGTAGACGTTCTT 59.030 50.000 13.81 0.00 0.00 2.52
5395 5640 0.802607 GTACGCAGCCAGCTGTAGAC 60.803 60.000 20.11 11.65 45.24 2.59
5398 5643 0.034198 TTTGTACGCAGCCAGCTGTA 59.966 50.000 20.11 3.87 45.24 2.74
5403 5648 0.523072 AGCATTTTGTACGCAGCCAG 59.477 50.000 0.00 0.00 0.00 4.85
5448 5693 7.221450 ACAGCTAGTAATCTGTGGTTGTTAAA 58.779 34.615 0.52 0.00 41.53 1.52
5518 5808 2.558313 GCCTGCGCACTCAGTTTC 59.442 61.111 5.66 0.00 34.03 2.78
5564 5854 1.519455 GAGTCGGGAGTGCGAATGG 60.519 63.158 0.00 0.00 0.00 3.16
5636 5961 3.240134 GAGGGCCGCTGTCTGTCAA 62.240 63.158 0.00 0.00 0.00 3.18
5640 5965 4.020617 TTGGAGGGCCGCTGTCTG 62.021 66.667 7.35 0.00 36.79 3.51
5691 6033 0.456312 GGCGTCTCTGTTGTACTCGG 60.456 60.000 0.00 0.00 0.00 4.63
5807 6233 1.817911 TACGTGTGTCCGGAATGGCA 61.818 55.000 5.23 0.00 37.80 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.