Multiple sequence alignment - TraesCS3B01G297300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G297300 chr3B 100.000 3956 0 0 1 3956 476947313 476943358 0.000000e+00 7306.0
1 TraesCS3B01G297300 chr3B 83.029 383 49 13 3502 3879 528717199 528717570 2.280000e-87 333.0
2 TraesCS3B01G297300 chr3B 94.203 69 4 0 629 697 143502455 143502387 5.410000e-19 106.0
3 TraesCS3B01G297300 chr3A 93.645 1904 75 17 701 2571 487855560 487853670 0.000000e+00 2804.0
4 TraesCS3B01G297300 chr3A 93.657 536 24 6 2570 3099 487853631 487853100 0.000000e+00 793.0
5 TraesCS3B01G297300 chr3A 90.164 488 38 5 3474 3956 487850419 487849937 9.330000e-176 627.0
6 TraesCS3B01G297300 chr3A 86.162 383 46 6 3500 3879 524330033 524330411 1.320000e-109 407.0
7 TraesCS3B01G297300 chr3A 83.442 308 39 6 218 518 487855854 487855552 3.890000e-70 276.0
8 TraesCS3B01G297300 chr3D 92.639 1902 84 27 701 2571 365907413 365905537 0.000000e+00 2686.0
9 TraesCS3B01G297300 chr3D 95.098 714 21 9 2573 3277 365905495 365904787 0.000000e+00 1112.0
10 TraesCS3B01G297300 chr3D 88.612 641 48 14 3321 3956 365904769 365904149 0.000000e+00 756.0
11 TraesCS3B01G297300 chr3D 86.943 314 25 10 215 518 365907712 365907405 4.900000e-89 339.0
12 TraesCS3B01G297300 chr1A 84.579 856 124 7 1125 1973 550972057 550971203 0.000000e+00 843.0
13 TraesCS3B01G297300 chr1B 84.229 856 127 7 1125 1973 629942592 629941738 0.000000e+00 826.0
14 TraesCS3B01G297300 chr1B 83.690 374 53 7 3498 3866 534163409 534163039 2.930000e-91 346.0
15 TraesCS3B01G297300 chr1D 84.694 784 110 8 1198 1973 458486189 458485408 0.000000e+00 774.0
16 TraesCS3B01G297300 chr1D 90.374 187 12 3 519 700 232431885 232432070 1.420000e-59 241.0
17 TraesCS3B01G297300 chr5A 87.097 372 41 5 3511 3878 415429078 415428710 7.910000e-112 414.0
18 TraesCS3B01G297300 chr6D 84.555 382 51 6 3502 3879 396406026 396405649 4.830000e-99 372.0
19 TraesCS3B01G297300 chr6A 84.073 383 52 7 3502 3879 542694500 542694122 1.050000e-95 361.0
20 TraesCS3B01G297300 chr6A 89.730 185 15 3 519 702 596072646 596072827 2.380000e-57 233.0
21 TraesCS3B01G297300 chr7D 83.721 387 53 7 3502 3881 512283964 512284347 1.350000e-94 357.0
22 TraesCS3B01G297300 chr4B 93.989 183 10 1 519 700 8296071 8295889 3.890000e-70 276.0
23 TraesCS3B01G297300 chr2D 88.636 176 15 4 519 692 22504742 22504570 4.010000e-50 209.0
24 TraesCS3B01G297300 chr2D 89.308 159 12 3 521 678 345516496 345516650 1.120000e-45 195.0
25 TraesCS3B01G297300 chr2D 100.000 29 0 0 671 699 619478153 619478181 2.000000e-03 54.7
26 TraesCS3B01G297300 chr4A 88.112 143 13 4 518 658 629398216 629398076 2.450000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G297300 chr3B 476943358 476947313 3955 True 7306.00 7306 100.000 1 3956 1 chr3B.!!$R2 3955
1 TraesCS3B01G297300 chr3A 487849937 487855854 5917 True 1125.00 2804 90.227 218 3956 4 chr3A.!!$R1 3738
2 TraesCS3B01G297300 chr3D 365904149 365907712 3563 True 1223.25 2686 90.823 215 3956 4 chr3D.!!$R1 3741
3 TraesCS3B01G297300 chr1A 550971203 550972057 854 True 843.00 843 84.579 1125 1973 1 chr1A.!!$R1 848
4 TraesCS3B01G297300 chr1B 629941738 629942592 854 True 826.00 826 84.229 1125 1973 1 chr1B.!!$R2 848
5 TraesCS3B01G297300 chr1D 458485408 458486189 781 True 774.00 774 84.694 1198 1973 1 chr1D.!!$R1 775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
889 904 0.035176 TTGCAATGGGCCTCTTTTGC 59.965 50.000 19.87 19.87 43.89 3.68 F
890 905 1.120184 TGCAATGGGCCTCTTTTGCA 61.120 50.000 23.21 23.21 43.89 4.08 F
891 906 0.035176 GCAATGGGCCTCTTTTGCAA 59.965 50.000 20.99 0.00 36.11 4.08 F
892 907 1.339342 GCAATGGGCCTCTTTTGCAAT 60.339 47.619 20.99 0.00 36.11 3.56 F
1196 1239 1.388065 CGCCCTTCATCGTCTCCTCT 61.388 60.000 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2112 1.651737 TAGCCACAAGGGTAAGCTGA 58.348 50.000 0.00 0.0 45.7 4.26 R
2429 2482 2.170166 GGCACCATGGAAGATGAACAA 58.830 47.619 21.47 0.0 0.0 2.83 R
2791 2887 2.325583 ACGCCTCAAGACAGTCAAAA 57.674 45.000 2.66 0.0 0.0 2.44 R
2920 3016 6.721208 ACAATTTACTGGTTCCATGATTCACT 59.279 34.615 0.00 0.0 0.0 3.41 R
2985 3081 1.699083 TCACAGGATCTTGCAGGTCAA 59.301 47.619 4.46 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.915437 CTAACCAGTGAACGCCAATTT 57.085 42.857 0.00 0.00 0.00 1.82
21 22 4.237349 CTAACCAGTGAACGCCAATTTT 57.763 40.909 0.00 0.00 0.00 1.82
22 23 3.535280 AACCAGTGAACGCCAATTTTT 57.465 38.095 0.00 0.00 0.00 1.94
40 41 4.647424 TTTTTAGGCAATAATCCCAGCG 57.353 40.909 0.00 0.00 0.00 5.18
41 42 3.569194 TTTAGGCAATAATCCCAGCGA 57.431 42.857 0.00 0.00 0.00 4.93
42 43 3.569194 TTAGGCAATAATCCCAGCGAA 57.431 42.857 0.00 0.00 0.00 4.70
43 44 1.680338 AGGCAATAATCCCAGCGAAC 58.320 50.000 0.00 0.00 0.00 3.95
44 45 0.307760 GGCAATAATCCCAGCGAACG 59.692 55.000 0.00 0.00 0.00 3.95
45 46 0.317020 GCAATAATCCCAGCGAACGC 60.317 55.000 11.31 11.31 42.33 4.84
46 47 0.307760 CAATAATCCCAGCGAACGCC 59.692 55.000 15.44 0.00 43.17 5.68
47 48 0.818040 AATAATCCCAGCGAACGCCC 60.818 55.000 15.44 0.00 43.17 6.13
48 49 1.696097 ATAATCCCAGCGAACGCCCT 61.696 55.000 15.44 0.00 43.17 5.19
49 50 1.906105 TAATCCCAGCGAACGCCCTT 61.906 55.000 15.44 5.35 43.17 3.95
50 51 1.906105 AATCCCAGCGAACGCCCTTA 61.906 55.000 15.44 0.38 43.17 2.69
51 52 2.311688 ATCCCAGCGAACGCCCTTAG 62.312 60.000 15.44 1.38 43.17 2.18
52 53 2.511600 CCAGCGAACGCCCTTAGG 60.512 66.667 15.44 6.69 43.17 2.69
53 54 2.577059 CAGCGAACGCCCTTAGGA 59.423 61.111 15.44 0.00 43.17 2.94
54 55 1.810030 CAGCGAACGCCCTTAGGAC 60.810 63.158 15.44 0.00 43.17 3.85
55 56 2.510918 GCGAACGCCCTTAGGACC 60.511 66.667 8.03 0.00 33.47 4.46
56 57 2.202703 CGAACGCCCTTAGGACCG 60.203 66.667 0.00 4.73 33.47 4.79
57 58 2.976356 GAACGCCCTTAGGACCGT 59.024 61.111 10.27 10.27 33.47 4.83
58 59 1.153686 GAACGCCCTTAGGACCGTC 60.154 63.158 14.97 7.41 31.62 4.79
59 60 1.880819 GAACGCCCTTAGGACCGTCA 61.881 60.000 14.97 0.00 31.62 4.35
60 61 1.885163 AACGCCCTTAGGACCGTCAG 61.885 60.000 14.97 0.00 31.62 3.51
61 62 2.050350 CGCCCTTAGGACCGTCAGA 61.050 63.158 0.00 0.00 33.47 3.27
62 63 1.392710 CGCCCTTAGGACCGTCAGAT 61.393 60.000 0.00 0.00 33.47 2.90
63 64 0.389757 GCCCTTAGGACCGTCAGATC 59.610 60.000 0.00 0.00 33.47 2.75
64 65 1.041437 CCCTTAGGACCGTCAGATCC 58.959 60.000 0.00 0.00 33.47 3.36
65 66 1.041437 CCTTAGGACCGTCAGATCCC 58.959 60.000 0.00 0.00 35.38 3.85
66 67 0.669077 CTTAGGACCGTCAGATCCCG 59.331 60.000 0.00 0.00 35.38 5.14
67 68 0.256752 TTAGGACCGTCAGATCCCGA 59.743 55.000 0.00 0.00 35.38 5.14
68 69 0.477204 TAGGACCGTCAGATCCCGAT 59.523 55.000 0.00 0.00 35.38 4.18
69 70 0.824182 AGGACCGTCAGATCCCGATC 60.824 60.000 0.00 0.00 35.38 3.69
70 71 1.107538 GGACCGTCAGATCCCGATCA 61.108 60.000 7.42 0.00 40.22 2.92
71 72 0.744874 GACCGTCAGATCCCGATCAA 59.255 55.000 7.42 0.00 40.22 2.57
72 73 1.136305 GACCGTCAGATCCCGATCAAA 59.864 52.381 7.42 0.00 40.22 2.69
73 74 1.134788 ACCGTCAGATCCCGATCAAAC 60.135 52.381 7.42 4.02 40.22 2.93
74 75 1.200483 CGTCAGATCCCGATCAAACG 58.800 55.000 13.74 13.74 40.22 3.60
75 76 0.931005 GTCAGATCCCGATCAAACGC 59.069 55.000 7.42 0.00 40.22 4.84
76 77 0.534873 TCAGATCCCGATCAAACGCA 59.465 50.000 7.42 0.00 40.22 5.24
77 78 1.138859 TCAGATCCCGATCAAACGCAT 59.861 47.619 7.42 0.00 40.22 4.73
78 79 1.262417 CAGATCCCGATCAAACGCATG 59.738 52.381 7.42 0.00 40.22 4.06
79 80 1.138859 AGATCCCGATCAAACGCATGA 59.861 47.619 7.42 0.00 40.22 3.07
80 81 1.261619 GATCCCGATCAAACGCATGAC 59.738 52.381 0.00 0.00 37.74 3.06
81 82 0.036858 TCCCGATCAAACGCATGACA 60.037 50.000 0.00 0.00 30.82 3.58
82 83 0.374758 CCCGATCAAACGCATGACAG 59.625 55.000 0.00 0.00 30.82 3.51
83 84 1.078709 CCGATCAAACGCATGACAGT 58.921 50.000 0.00 0.00 30.82 3.55
84 85 1.464608 CCGATCAAACGCATGACAGTT 59.535 47.619 0.00 0.00 30.82 3.16
85 86 2.670905 CCGATCAAACGCATGACAGTTA 59.329 45.455 0.00 0.00 30.82 2.24
86 87 3.483574 CCGATCAAACGCATGACAGTTAC 60.484 47.826 0.00 0.00 30.82 2.50
87 88 3.367932 CGATCAAACGCATGACAGTTACT 59.632 43.478 0.00 0.00 30.82 2.24
88 89 4.561213 CGATCAAACGCATGACAGTTACTA 59.439 41.667 0.00 0.00 30.82 1.82
89 90 5.232202 CGATCAAACGCATGACAGTTACTAT 59.768 40.000 0.00 0.00 30.82 2.12
90 91 6.416750 CGATCAAACGCATGACAGTTACTATA 59.583 38.462 0.00 0.00 30.82 1.31
91 92 6.880822 TCAAACGCATGACAGTTACTATAC 57.119 37.500 0.00 0.00 0.00 1.47
92 93 5.513849 TCAAACGCATGACAGTTACTATACG 59.486 40.000 0.00 0.00 0.00 3.06
93 94 3.369385 ACGCATGACAGTTACTATACGC 58.631 45.455 0.00 0.00 0.00 4.42
94 95 3.181494 ACGCATGACAGTTACTATACGCA 60.181 43.478 0.00 0.00 0.00 5.24
95 96 3.422217 CGCATGACAGTTACTATACGCAG 59.578 47.826 0.00 0.00 0.00 5.18
96 97 3.182572 GCATGACAGTTACTATACGCAGC 59.817 47.826 0.00 0.00 0.00 5.25
97 98 3.060978 TGACAGTTACTATACGCAGCG 57.939 47.619 14.82 14.82 0.00 5.18
98 99 2.421073 TGACAGTTACTATACGCAGCGT 59.579 45.455 26.25 26.25 44.35 5.07
99 100 2.782192 GACAGTTACTATACGCAGCGTG 59.218 50.000 30.67 16.27 41.39 5.34
100 101 1.517276 CAGTTACTATACGCAGCGTGC 59.483 52.381 30.67 3.28 41.39 5.34
101 102 0.850856 GTTACTATACGCAGCGTGCC 59.149 55.000 30.67 6.16 41.12 5.01
102 103 0.456628 TTACTATACGCAGCGTGCCA 59.543 50.000 30.67 11.41 41.12 4.92
103 104 0.456628 TACTATACGCAGCGTGCCAA 59.543 50.000 30.67 10.99 41.12 4.52
104 105 0.390603 ACTATACGCAGCGTGCCAAA 60.391 50.000 30.67 10.56 41.12 3.28
105 106 0.937304 CTATACGCAGCGTGCCAAAT 59.063 50.000 30.67 17.35 41.12 2.32
106 107 1.330521 CTATACGCAGCGTGCCAAATT 59.669 47.619 30.67 2.79 41.12 1.82
107 108 0.525761 ATACGCAGCGTGCCAAATTT 59.474 45.000 30.67 1.97 41.12 1.82
108 109 0.312416 TACGCAGCGTGCCAAATTTT 59.688 45.000 30.67 1.15 41.12 1.82
109 110 0.939106 ACGCAGCGTGCCAAATTTTC 60.939 50.000 22.28 0.00 41.12 2.29
110 111 0.664166 CGCAGCGTGCCAAATTTTCT 60.664 50.000 6.65 0.00 41.12 2.52
111 112 0.785979 GCAGCGTGCCAAATTTTCTG 59.214 50.000 0.00 0.00 37.42 3.02
112 113 0.785979 CAGCGTGCCAAATTTTCTGC 59.214 50.000 0.00 0.00 0.00 4.26
113 114 0.319813 AGCGTGCCAAATTTTCTGCC 60.320 50.000 0.00 0.00 0.00 4.85
114 115 0.599728 GCGTGCCAAATTTTCTGCCA 60.600 50.000 0.00 0.00 0.00 4.92
115 116 1.139163 CGTGCCAAATTTTCTGCCAC 58.861 50.000 0.00 0.00 0.00 5.01
116 117 1.269726 CGTGCCAAATTTTCTGCCACT 60.270 47.619 0.00 0.00 0.00 4.00
117 118 2.802774 CGTGCCAAATTTTCTGCCACTT 60.803 45.455 0.00 0.00 0.00 3.16
118 119 3.205338 GTGCCAAATTTTCTGCCACTTT 58.795 40.909 0.00 0.00 0.00 2.66
119 120 3.627123 GTGCCAAATTTTCTGCCACTTTT 59.373 39.130 0.00 0.00 0.00 2.27
120 121 4.096231 GTGCCAAATTTTCTGCCACTTTTT 59.904 37.500 0.00 0.00 0.00 1.94
142 143 7.630470 TTTTGTACTACATTGCAATTTTCGG 57.370 32.000 9.83 0.17 0.00 4.30
143 144 5.303747 TGTACTACATTGCAATTTTCGGG 57.696 39.130 9.83 0.00 0.00 5.14
144 145 4.762765 TGTACTACATTGCAATTTTCGGGT 59.237 37.500 9.83 6.14 0.00 5.28
145 146 4.864704 ACTACATTGCAATTTTCGGGTT 57.135 36.364 9.83 0.00 0.00 4.11
146 147 4.555262 ACTACATTGCAATTTTCGGGTTG 58.445 39.130 9.83 7.16 0.00 3.77
147 148 2.765122 ACATTGCAATTTTCGGGTTGG 58.235 42.857 9.83 0.00 0.00 3.77
148 149 2.366916 ACATTGCAATTTTCGGGTTGGA 59.633 40.909 9.83 0.00 0.00 3.53
149 150 2.810439 TTGCAATTTTCGGGTTGGAG 57.190 45.000 0.00 0.00 0.00 3.86
150 151 0.316841 TGCAATTTTCGGGTTGGAGC 59.683 50.000 0.00 0.00 0.00 4.70
151 152 0.316841 GCAATTTTCGGGTTGGAGCA 59.683 50.000 0.00 0.00 0.00 4.26
152 153 1.066929 GCAATTTTCGGGTTGGAGCAT 60.067 47.619 0.00 0.00 0.00 3.79
153 154 2.165437 GCAATTTTCGGGTTGGAGCATA 59.835 45.455 0.00 0.00 0.00 3.14
154 155 3.367910 GCAATTTTCGGGTTGGAGCATAA 60.368 43.478 0.00 0.00 0.00 1.90
155 156 4.815269 CAATTTTCGGGTTGGAGCATAAA 58.185 39.130 0.00 0.00 0.00 1.40
156 157 5.233988 CAATTTTCGGGTTGGAGCATAAAA 58.766 37.500 0.00 0.00 0.00 1.52
157 158 4.939052 TTTTCGGGTTGGAGCATAAAAA 57.061 36.364 0.00 0.00 0.00 1.94
208 209 7.975866 ATTTGTTTTCGCATGATAATCTGAC 57.024 32.000 0.00 0.00 0.00 3.51
209 210 5.142635 TGTTTTCGCATGATAATCTGACG 57.857 39.130 0.00 0.00 0.00 4.35
210 211 3.859745 TTTCGCATGATAATCTGACGC 57.140 42.857 0.00 0.00 0.00 5.19
211 212 1.783284 TCGCATGATAATCTGACGCC 58.217 50.000 0.00 0.00 0.00 5.68
212 213 0.792640 CGCATGATAATCTGACGCCC 59.207 55.000 0.00 0.00 0.00 6.13
213 214 1.606480 CGCATGATAATCTGACGCCCT 60.606 52.381 0.00 0.00 0.00 5.19
276 277 6.819146 AGAGGTCCGAGTGAATTAAAGATTTC 59.181 38.462 0.00 0.00 0.00 2.17
277 278 5.880887 AGGTCCGAGTGAATTAAAGATTTCC 59.119 40.000 0.00 0.00 0.00 3.13
283 284 8.768955 CCGAGTGAATTAAAGATTTCCTATGAG 58.231 37.037 0.00 0.00 0.00 2.90
299 300 5.874810 TCCTATGAGTTGTAGTGCAATGAAC 59.125 40.000 0.00 0.00 39.55 3.18
301 302 5.869753 ATGAGTTGTAGTGCAATGAACTC 57.130 39.130 23.45 23.45 41.85 3.01
302 303 4.960938 TGAGTTGTAGTGCAATGAACTCT 58.039 39.130 27.09 11.37 41.96 3.24
336 341 9.677567 AAATTGGTATATGATTCAATTGTACGC 57.322 29.630 5.13 0.00 39.06 4.42
360 365 7.543868 CGCATCAAATAACCAACATAGGAAAAA 59.456 33.333 0.00 0.00 0.00 1.94
369 374 6.691508 ACCAACATAGGAAAAATTCTTGAGC 58.308 36.000 0.00 0.00 0.00 4.26
370 375 6.494835 ACCAACATAGGAAAAATTCTTGAGCT 59.505 34.615 0.00 0.00 0.00 4.09
373 378 8.706035 CAACATAGGAAAAATTCTTGAGCTTTG 58.294 33.333 0.00 0.00 0.00 2.77
383 388 9.551734 AAAATTCTTGAGCTTTGCTAATTCTTT 57.448 25.926 0.00 0.00 39.88 2.52
525 537 6.842163 GTGGTCACCTAAATGTTGAGTAATG 58.158 40.000 0.00 0.00 0.00 1.90
526 538 5.414454 TGGTCACCTAAATGTTGAGTAATGC 59.586 40.000 0.00 0.00 0.00 3.56
527 539 5.648092 GGTCACCTAAATGTTGAGTAATGCT 59.352 40.000 0.00 0.00 0.00 3.79
528 540 6.821665 GGTCACCTAAATGTTGAGTAATGCTA 59.178 38.462 0.00 0.00 0.00 3.49
529 541 7.011482 GGTCACCTAAATGTTGAGTAATGCTAG 59.989 40.741 0.00 0.00 0.00 3.42
530 542 7.764443 GTCACCTAAATGTTGAGTAATGCTAGA 59.236 37.037 0.00 0.00 0.00 2.43
531 543 7.764443 TCACCTAAATGTTGAGTAATGCTAGAC 59.236 37.037 0.00 0.00 0.00 2.59
532 544 7.011482 CACCTAAATGTTGAGTAATGCTAGACC 59.989 40.741 0.00 0.00 0.00 3.85
533 545 7.092846 ACCTAAATGTTGAGTAATGCTAGACCT 60.093 37.037 0.00 0.00 0.00 3.85
534 546 8.421784 CCTAAATGTTGAGTAATGCTAGACCTA 58.578 37.037 0.00 0.00 0.00 3.08
535 547 9.250624 CTAAATGTTGAGTAATGCTAGACCTAC 57.749 37.037 0.00 0.00 0.00 3.18
536 548 5.244785 TGTTGAGTAATGCTAGACCTACG 57.755 43.478 0.00 0.00 0.00 3.51
537 549 4.703575 TGTTGAGTAATGCTAGACCTACGT 59.296 41.667 0.00 0.00 0.00 3.57
538 550 5.882000 TGTTGAGTAATGCTAGACCTACGTA 59.118 40.000 0.00 0.00 0.00 3.57
539 551 6.037940 TGTTGAGTAATGCTAGACCTACGTAG 59.962 42.308 15.92 15.92 0.00 3.51
553 565 5.349824 CCTACGTAGGGATTCTTACGTAC 57.650 47.826 30.62 1.22 45.65 3.67
554 566 5.059833 CCTACGTAGGGATTCTTACGTACT 58.940 45.833 30.62 3.88 45.65 2.73
555 567 5.529060 CCTACGTAGGGATTCTTACGTACTT 59.471 44.000 30.62 3.55 45.65 2.24
556 568 5.904362 ACGTAGGGATTCTTACGTACTTT 57.096 39.130 18.85 0.00 45.65 2.66
557 569 7.226720 CCTACGTAGGGATTCTTACGTACTTTA 59.773 40.741 30.62 6.31 45.65 1.85
558 570 6.786207 ACGTAGGGATTCTTACGTACTTTAC 58.214 40.000 18.85 0.00 45.65 2.01
575 587 9.405083 CGTACTTTACGTAATTGATGATTTGTC 57.595 33.333 9.18 0.00 46.41 3.18
578 590 8.999431 ACTTTACGTAATTGATGATTTGTCAGT 58.001 29.630 9.18 1.46 0.00 3.41
579 591 9.825972 CTTTACGTAATTGATGATTTGTCAGTT 57.174 29.630 9.18 0.00 31.64 3.16
589 601 9.743057 TTGATGATTTGTCAGTTTTTAATTCGT 57.257 25.926 0.00 0.00 0.00 3.85
590 602 9.393249 TGATGATTTGTCAGTTTTTAATTCGTC 57.607 29.630 0.00 0.00 0.00 4.20
591 603 9.393249 GATGATTTGTCAGTTTTTAATTCGTCA 57.607 29.630 0.00 0.00 0.00 4.35
592 604 9.912634 ATGATTTGTCAGTTTTTAATTCGTCAT 57.087 25.926 0.00 0.00 0.00 3.06
593 605 9.743057 TGATTTGTCAGTTTTTAATTCGTCATT 57.257 25.926 0.00 0.00 0.00 2.57
598 610 9.658475 TGTCAGTTTTTAATTCGTCATTAGTTG 57.342 29.630 0.00 0.00 0.00 3.16
599 611 9.113876 GTCAGTTTTTAATTCGTCATTAGTTGG 57.886 33.333 0.00 0.00 0.00 3.77
600 612 8.293867 TCAGTTTTTAATTCGTCATTAGTTGGG 58.706 33.333 0.00 0.00 0.00 4.12
601 613 7.540745 CAGTTTTTAATTCGTCATTAGTTGGGG 59.459 37.037 0.00 0.00 0.00 4.96
602 614 6.518208 TTTTAATTCGTCATTAGTTGGGGG 57.482 37.500 0.00 0.00 0.00 5.40
603 615 2.052782 ATTCGTCATTAGTTGGGGGC 57.947 50.000 0.00 0.00 0.00 5.80
604 616 0.693622 TTCGTCATTAGTTGGGGGCA 59.306 50.000 0.00 0.00 0.00 5.36
605 617 0.035820 TCGTCATTAGTTGGGGGCAC 60.036 55.000 0.00 0.00 0.00 5.01
606 618 1.366111 CGTCATTAGTTGGGGGCACG 61.366 60.000 0.00 0.00 0.00 5.34
607 619 1.029947 GTCATTAGTTGGGGGCACGG 61.030 60.000 0.00 0.00 0.00 4.94
608 620 1.001393 CATTAGTTGGGGGCACGGT 60.001 57.895 0.00 0.00 0.00 4.83
609 621 1.029947 CATTAGTTGGGGGCACGGTC 61.030 60.000 0.00 0.00 0.00 4.79
610 622 2.206182 ATTAGTTGGGGGCACGGTCC 62.206 60.000 0.00 0.00 0.00 4.46
618 630 3.948719 GGCACGGTCCACCCTTGA 61.949 66.667 0.00 0.00 34.39 3.02
619 631 2.112297 GCACGGTCCACCCTTGAA 59.888 61.111 0.00 0.00 34.39 2.69
620 632 1.527380 GCACGGTCCACCCTTGAAA 60.527 57.895 0.00 0.00 34.39 2.69
621 633 0.893727 GCACGGTCCACCCTTGAAAT 60.894 55.000 0.00 0.00 34.39 2.17
622 634 1.165270 CACGGTCCACCCTTGAAATC 58.835 55.000 0.00 0.00 34.39 2.17
623 635 0.768622 ACGGTCCACCCTTGAAATCA 59.231 50.000 0.00 0.00 0.00 2.57
624 636 1.271379 ACGGTCCACCCTTGAAATCAG 60.271 52.381 0.00 0.00 0.00 2.90
625 637 1.839424 GGTCCACCCTTGAAATCAGG 58.161 55.000 0.00 0.00 0.00 3.86
646 658 0.455815 GGGGGCAGTTTTGATTAGCG 59.544 55.000 0.00 0.00 0.00 4.26
647 659 1.173913 GGGGCAGTTTTGATTAGCGT 58.826 50.000 0.00 0.00 0.00 5.07
648 660 1.544246 GGGGCAGTTTTGATTAGCGTT 59.456 47.619 0.00 0.00 0.00 4.84
649 661 2.029380 GGGGCAGTTTTGATTAGCGTTT 60.029 45.455 0.00 0.00 0.00 3.60
650 662 3.191791 GGGGCAGTTTTGATTAGCGTTTA 59.808 43.478 0.00 0.00 0.00 2.01
651 663 4.412207 GGGCAGTTTTGATTAGCGTTTAG 58.588 43.478 0.00 0.00 0.00 1.85
666 678 4.657075 CGTTTAGCAAATCACGTAGGTT 57.343 40.909 0.00 0.00 0.00 3.50
667 679 5.766702 CGTTTAGCAAATCACGTAGGTTA 57.233 39.130 0.00 0.00 0.00 2.85
668 680 5.544621 CGTTTAGCAAATCACGTAGGTTAC 58.455 41.667 0.00 0.00 0.00 2.50
686 698 2.645411 CGTAAGTGCCGTTCGTAGG 58.355 57.895 0.00 0.00 0.00 3.18
687 699 0.109597 CGTAAGTGCCGTTCGTAGGT 60.110 55.000 0.00 0.00 0.00 3.08
688 700 1.343506 GTAAGTGCCGTTCGTAGGTG 58.656 55.000 0.00 0.00 0.00 4.00
689 701 0.961019 TAAGTGCCGTTCGTAGGTGT 59.039 50.000 0.00 0.00 0.00 4.16
690 702 0.961019 AAGTGCCGTTCGTAGGTGTA 59.039 50.000 0.00 0.00 0.00 2.90
691 703 0.524862 AGTGCCGTTCGTAGGTGTAG 59.475 55.000 0.00 0.00 0.00 2.74
692 704 1.074872 GTGCCGTTCGTAGGTGTAGC 61.075 60.000 0.00 0.00 0.00 3.58
693 705 1.213537 GCCGTTCGTAGGTGTAGCA 59.786 57.895 0.00 0.00 0.00 3.49
694 706 0.179119 GCCGTTCGTAGGTGTAGCAT 60.179 55.000 0.00 0.00 0.00 3.79
695 707 1.738030 GCCGTTCGTAGGTGTAGCATT 60.738 52.381 0.00 0.00 0.00 3.56
696 708 2.480073 GCCGTTCGTAGGTGTAGCATTA 60.480 50.000 0.00 0.00 0.00 1.90
697 709 3.797865 GCCGTTCGTAGGTGTAGCATTAT 60.798 47.826 0.00 0.00 0.00 1.28
698 710 4.365723 CCGTTCGTAGGTGTAGCATTATT 58.634 43.478 0.00 0.00 0.00 1.40
699 711 4.208460 CCGTTCGTAGGTGTAGCATTATTG 59.792 45.833 0.00 0.00 0.00 1.90
773 785 1.475682 CAGAGGGCCAAAGCATTTCTC 59.524 52.381 6.18 0.00 42.56 2.87
868 883 0.894141 AAGTGAGACGATCTGCAGCT 59.106 50.000 9.47 0.00 0.00 4.24
886 901 1.271001 GCTTTTGCAATGGGCCTCTTT 60.271 47.619 4.53 0.00 46.58 2.52
887 902 2.811504 GCTTTTGCAATGGGCCTCTTTT 60.812 45.455 4.53 0.00 46.58 2.27
889 904 0.035176 TTGCAATGGGCCTCTTTTGC 59.965 50.000 19.87 19.87 43.89 3.68
890 905 1.120184 TGCAATGGGCCTCTTTTGCA 61.120 50.000 23.21 23.21 43.89 4.08
891 906 0.035176 GCAATGGGCCTCTTTTGCAA 59.965 50.000 20.99 0.00 36.11 4.08
892 907 1.339342 GCAATGGGCCTCTTTTGCAAT 60.339 47.619 20.99 0.00 36.11 3.56
988 1031 3.375430 CCCCACTATAAACTCCTCCTCCT 60.375 52.174 0.00 0.00 0.00 3.69
989 1032 3.898741 CCCACTATAAACTCCTCCTCCTC 59.101 52.174 0.00 0.00 0.00 3.71
990 1033 3.898741 CCACTATAAACTCCTCCTCCTCC 59.101 52.174 0.00 0.00 0.00 4.30
1112 1155 4.500116 GCGCAGGAGTCCCTCGTC 62.500 72.222 18.29 9.68 42.02 4.20
1196 1239 1.388065 CGCCCTTCATCGTCTCCTCT 61.388 60.000 0.00 0.00 0.00 3.69
1601 1650 2.087009 GTCCTGCGTCCGTTTCTCG 61.087 63.158 0.00 0.00 39.52 4.04
1748 1797 3.626924 AGCCCAGACGGTTCGCTT 61.627 61.111 0.00 0.00 0.00 4.68
1847 1896 4.262463 GCGGGATCCATTATCAACTCACTA 60.262 45.833 15.23 0.00 36.20 2.74
1989 2038 3.803368 GCAGGTTTGTTTCCAATTCCCAG 60.803 47.826 0.00 0.00 0.00 4.45
2003 2052 6.000219 CCAATTCCCAGTATCACTCCTTATG 59.000 44.000 0.00 0.00 0.00 1.90
2180 2229 9.438228 TCATGTTGTAATGATGATTTTTGCATT 57.562 25.926 0.00 0.00 31.58 3.56
2186 2235 8.719648 TGTAATGATGATTTTTGCATTGGTTTC 58.280 29.630 0.00 0.00 33.45 2.78
2187 2236 7.989416 AATGATGATTTTTGCATTGGTTTCT 57.011 28.000 0.00 0.00 30.43 2.52
2188 2237 7.989416 ATGATGATTTTTGCATTGGTTTCTT 57.011 28.000 0.00 0.00 0.00 2.52
2199 2248 6.451393 TGCATTGGTTTCTTAACATTACCAC 58.549 36.000 0.00 0.00 38.53 4.16
2202 2251 7.573469 GCATTGGTTTCTTAACATTACCACGTA 60.573 37.037 0.00 0.00 38.53 3.57
2219 2269 2.299521 CGTAAGGGTTTTGGTTCACCA 58.700 47.619 0.00 0.00 45.94 4.17
2354 2406 9.765795 GAATAAATAGCAGTTCACTACCAGTAT 57.234 33.333 0.00 0.00 0.00 2.12
2489 2543 3.424703 AGGCTGCATTGTATTGTCAAGT 58.575 40.909 0.50 0.00 0.00 3.16
2493 2547 4.083110 GCTGCATTGTATTGTCAAGTGAGT 60.083 41.667 0.00 0.00 0.00 3.41
2511 2567 5.900123 AGTGAGTTATATAGGAAGCACAGGT 59.100 40.000 0.00 0.00 0.00 4.00
2513 2569 7.730784 AGTGAGTTATATAGGAAGCACAGGTAT 59.269 37.037 0.00 0.00 0.00 2.73
2517 2573 8.157476 AGTTATATAGGAAGCACAGGTATTTGG 58.843 37.037 0.00 0.00 0.00 3.28
2551 2607 8.833231 TGTTCTAATGCATAGCTAAATAGACC 57.167 34.615 0.00 0.00 0.00 3.85
2565 2621 9.614792 AGCTAAATAGACCGATTCTGTTTTTAT 57.385 29.630 11.90 0.49 41.54 1.40
2665 2761 3.200593 GCGGATGGCAGCACTCTG 61.201 66.667 4.64 0.00 42.87 3.35
2791 2887 3.751518 ACGGCTGTGGTATCTTCTTTTT 58.248 40.909 0.00 0.00 0.00 1.94
2919 3015 7.039434 TGGTTTTGGCTGTTCAATATATTGTCA 60.039 33.333 21.89 19.47 38.84 3.58
2920 3016 7.816995 GGTTTTGGCTGTTCAATATATTGTCAA 59.183 33.333 21.89 9.80 38.84 3.18
2939 3035 5.221823 TGTCAAGTGAATCATGGAACCAGTA 60.222 40.000 0.00 0.00 0.00 2.74
2940 3036 5.705441 GTCAAGTGAATCATGGAACCAGTAA 59.295 40.000 0.00 0.00 0.00 2.24
2941 3037 6.206634 GTCAAGTGAATCATGGAACCAGTAAA 59.793 38.462 0.00 0.00 0.00 2.01
2945 3041 6.721208 AGTGAATCATGGAACCAGTAAATTGT 59.279 34.615 0.00 0.00 0.00 2.71
2961 3057 7.589587 CAGTAAATTGTTGCTTGTTATGTCGAA 59.410 33.333 0.00 0.00 0.00 3.71
2983 3079 7.222805 TCGAAGGATTTTCTAAGAATGATGTCG 59.777 37.037 0.00 0.00 0.00 4.35
2985 3081 8.970859 AAGGATTTTCTAAGAATGATGTCGAT 57.029 30.769 0.00 0.00 0.00 3.59
2997 3093 2.028203 TGATGTCGATTGACCTGCAAGA 60.028 45.455 10.69 0.00 44.86 3.02
3019 3118 4.498345 GATCCTGTGATCTAACGTGAGTCC 60.498 50.000 0.00 0.00 43.59 3.85
3116 3216 6.071503 GCTAGGTTCTAGTACCACTCAAAAGA 60.072 42.308 19.53 0.00 40.82 2.52
3135 3235 2.554032 AGATTTTGCTTAGCTGTGCGTT 59.446 40.909 5.60 0.00 0.00 4.84
3281 3392 0.835941 AGAATTCATGCCGGCTCTCT 59.164 50.000 29.70 16.05 0.00 3.10
3282 3393 1.211457 AGAATTCATGCCGGCTCTCTT 59.789 47.619 29.70 14.37 0.00 2.85
3283 3394 1.601430 GAATTCATGCCGGCTCTCTTC 59.399 52.381 29.70 18.73 0.00 2.87
3284 3395 0.835941 ATTCATGCCGGCTCTCTTCT 59.164 50.000 29.70 3.19 0.00 2.85
3286 3397 1.709578 TCATGCCGGCTCTCTTCTAT 58.290 50.000 29.70 6.94 0.00 1.98
3287 3398 2.876581 TCATGCCGGCTCTCTTCTATA 58.123 47.619 29.70 2.45 0.00 1.31
3288 3399 3.230976 TCATGCCGGCTCTCTTCTATAA 58.769 45.455 29.70 1.81 0.00 0.98
3289 3400 3.641436 TCATGCCGGCTCTCTTCTATAAA 59.359 43.478 29.70 1.56 0.00 1.40
3290 3401 3.735237 TGCCGGCTCTCTTCTATAAAG 57.265 47.619 29.70 0.00 0.00 1.85
3292 3403 2.036604 GCCGGCTCTCTTCTATAAAGCT 59.963 50.000 22.15 0.00 33.50 3.74
3293 3404 3.256136 GCCGGCTCTCTTCTATAAAGCTA 59.744 47.826 22.15 0.00 33.50 3.32
3294 3405 4.800784 CCGGCTCTCTTCTATAAAGCTAC 58.199 47.826 0.00 0.00 33.50 3.58
3295 3406 4.468643 CGGCTCTCTTCTATAAAGCTACG 58.531 47.826 0.00 0.00 33.50 3.51
3296 3407 4.231439 GGCTCTCTTCTATAAAGCTACGC 58.769 47.826 0.00 0.00 33.50 4.42
3297 3408 4.231439 GCTCTCTTCTATAAAGCTACGCC 58.769 47.826 0.00 0.00 0.00 5.68
3298 3409 4.261656 GCTCTCTTCTATAAAGCTACGCCA 60.262 45.833 0.00 0.00 0.00 5.69
3299 3410 5.736492 GCTCTCTTCTATAAAGCTACGCCAA 60.736 44.000 0.00 0.00 0.00 4.52
3300 3411 6.406692 TCTCTTCTATAAAGCTACGCCAAT 57.593 37.500 0.00 0.00 0.00 3.16
3301 3412 7.520451 TCTCTTCTATAAAGCTACGCCAATA 57.480 36.000 0.00 0.00 0.00 1.90
3302 3413 7.594714 TCTCTTCTATAAAGCTACGCCAATAG 58.405 38.462 0.00 0.00 0.00 1.73
3303 3414 6.157211 TCTTCTATAAAGCTACGCCAATAGC 58.843 40.000 0.00 1.87 46.74 2.97
3351 3462 2.021068 GCAGTCCTAGCTCATGCCGA 62.021 60.000 0.00 0.00 40.80 5.54
3363 3474 3.126858 GCTCATGCCGACTTACAAAATGA 59.873 43.478 0.00 0.00 0.00 2.57
3365 3476 5.007626 GCTCATGCCGACTTACAAAATGATA 59.992 40.000 0.00 0.00 0.00 2.15
3404 3515 5.638657 AGATCAATCATTTAGCTCGAGCATC 59.361 40.000 36.87 24.85 45.16 3.91
3405 3516 4.060900 TCAATCATTTAGCTCGAGCATCC 58.939 43.478 36.87 9.99 45.16 3.51
3410 3523 0.753262 TTAGCTCGAGCATCCCCTTC 59.247 55.000 36.87 6.49 45.16 3.46
3413 3526 1.227497 CTCGAGCATCCCCTTCTGC 60.227 63.158 0.00 0.00 38.69 4.26
3421 3534 2.620108 GCATCCCCTTCTGCTTCTTCTT 60.620 50.000 0.00 0.00 35.49 2.52
3425 3538 3.331889 TCCCCTTCTGCTTCTTCTTGAAT 59.668 43.478 0.00 0.00 33.71 2.57
3440 3553 6.488006 TCTTCTTGAATCAAACCCTTCTCTTG 59.512 38.462 0.00 0.00 0.00 3.02
3447 3560 3.454447 TCAAACCCTTCTCTTGAGTGACA 59.546 43.478 0.00 0.00 0.00 3.58
3448 3561 3.477210 AACCCTTCTCTTGAGTGACAC 57.523 47.619 0.00 0.00 0.00 3.67
3452 3565 3.397482 CCTTCTCTTGAGTGACACCTTG 58.603 50.000 0.84 0.00 0.00 3.61
3453 3566 2.533266 TCTCTTGAGTGACACCTTGC 57.467 50.000 0.84 0.00 0.00 4.01
3454 3567 2.042464 TCTCTTGAGTGACACCTTGCT 58.958 47.619 0.84 0.00 0.00 3.91
3455 3568 2.036475 TCTCTTGAGTGACACCTTGCTC 59.964 50.000 0.84 0.00 0.00 4.26
3456 3569 1.070758 TCTTGAGTGACACCTTGCTCC 59.929 52.381 0.84 0.00 0.00 4.70
3457 3570 0.836606 TTGAGTGACACCTTGCTCCA 59.163 50.000 0.84 0.00 0.00 3.86
3458 3571 0.836606 TGAGTGACACCTTGCTCCAA 59.163 50.000 0.84 0.00 0.00 3.53
3493 6037 0.099436 GCCATGATCACCTTCGCAAC 59.901 55.000 0.00 0.00 0.00 4.17
3506 6050 2.853731 TCGCAACGAAAACATTGGTT 57.146 40.000 0.00 0.00 39.43 3.67
3517 6061 5.463061 CGAAAACATTGGTTGCTTCAATCTT 59.537 36.000 0.00 0.00 37.30 2.40
3535 6079 4.008074 TCTTGAGCTTCTTCGTTTGGAT 57.992 40.909 0.00 0.00 0.00 3.41
3550 6094 0.252881 TGGATGGCCTCCTCAGTCTT 60.253 55.000 18.49 0.00 45.21 3.01
3575 6119 2.011122 TCCTCCTTTTGACGGTCTCT 57.989 50.000 9.88 0.00 0.00 3.10
3577 6121 2.704065 TCCTCCTTTTGACGGTCTCTTT 59.296 45.455 9.88 0.00 0.00 2.52
3580 6124 3.463944 TCCTTTTGACGGTCTCTTTCAC 58.536 45.455 9.88 0.00 0.00 3.18
3607 6151 2.096860 GCTTCTTCGTTTGGAACTCGAC 60.097 50.000 0.00 0.00 33.38 4.20
3625 6169 2.599082 CGACGTAGACCTTCATTTGCTC 59.401 50.000 0.00 0.00 0.00 4.26
3630 6174 3.625649 AGACCTTCATTTGCTCCTCTC 57.374 47.619 0.00 0.00 0.00 3.20
3653 6197 2.663279 TTTTTGTCGCTTTCTCTCGC 57.337 45.000 0.00 0.00 0.00 5.03
3663 6207 0.388649 TTTCTCTCGCCTCGTGCTTC 60.389 55.000 0.00 0.00 38.05 3.86
3693 6237 4.321899 GGTCATCATGCCTTGCAAAGTTTA 60.322 41.667 0.00 0.00 44.25 2.01
3712 6256 1.252904 ATTGCAAGGCCAACGATGCT 61.253 50.000 5.01 0.00 37.58 3.79
3937 6481 3.443052 TGGGAGTCGGAGTGGTTTTATA 58.557 45.455 0.00 0.00 0.00 0.98
3941 6485 5.303845 GGGAGTCGGAGTGGTTTTATATAGT 59.696 44.000 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.915437 AAATTGGCGTTCACTGGTTAG 57.085 42.857 0.00 0.00 0.00 2.34
1 2 4.657436 AAAAATTGGCGTTCACTGGTTA 57.343 36.364 0.00 0.00 0.00 2.85
2 3 3.535280 AAAAATTGGCGTTCACTGGTT 57.465 38.095 0.00 0.00 0.00 3.67
19 20 4.274147 TCGCTGGGATTATTGCCTAAAAA 58.726 39.130 0.00 0.00 33.70 1.94
20 21 3.892284 TCGCTGGGATTATTGCCTAAAA 58.108 40.909 0.00 0.00 33.70 1.52
21 22 3.569194 TCGCTGGGATTATTGCCTAAA 57.431 42.857 0.00 0.00 33.70 1.85
22 23 3.211045 GTTCGCTGGGATTATTGCCTAA 58.789 45.455 0.00 0.00 33.70 2.69
23 24 2.805295 CGTTCGCTGGGATTATTGCCTA 60.805 50.000 0.00 0.00 33.70 3.93
24 25 1.680338 GTTCGCTGGGATTATTGCCT 58.320 50.000 0.00 0.00 33.70 4.75
25 26 0.307760 CGTTCGCTGGGATTATTGCC 59.692 55.000 0.00 0.00 0.00 4.52
26 27 0.317020 GCGTTCGCTGGGATTATTGC 60.317 55.000 9.99 0.00 0.00 3.56
27 28 0.307760 GGCGTTCGCTGGGATTATTG 59.692 55.000 16.40 0.00 0.00 1.90
28 29 0.818040 GGGCGTTCGCTGGGATTATT 60.818 55.000 16.40 0.00 0.00 1.40
29 30 1.227853 GGGCGTTCGCTGGGATTAT 60.228 57.895 16.40 0.00 0.00 1.28
30 31 1.906105 AAGGGCGTTCGCTGGGATTA 61.906 55.000 16.40 0.00 35.49 1.75
31 32 1.906105 TAAGGGCGTTCGCTGGGATT 61.906 55.000 16.40 7.40 35.49 3.01
32 33 2.311688 CTAAGGGCGTTCGCTGGGAT 62.312 60.000 16.40 2.76 35.49 3.85
33 34 2.998480 TAAGGGCGTTCGCTGGGA 60.998 61.111 16.40 0.00 35.49 4.37
34 35 2.511600 CTAAGGGCGTTCGCTGGG 60.512 66.667 16.40 0.67 35.49 4.45
35 36 2.511600 CCTAAGGGCGTTCGCTGG 60.512 66.667 16.40 7.88 35.49 4.85
36 37 1.810030 GTCCTAAGGGCGTTCGCTG 60.810 63.158 16.40 3.27 35.49 5.18
37 38 2.577593 GTCCTAAGGGCGTTCGCT 59.422 61.111 16.40 0.16 37.04 4.93
38 39 2.510918 GGTCCTAAGGGCGTTCGC 60.511 66.667 8.75 8.75 0.00 4.70
39 40 2.202703 CGGTCCTAAGGGCGTTCG 60.203 66.667 0.00 0.00 0.00 3.95
40 41 1.153686 GACGGTCCTAAGGGCGTTC 60.154 63.158 0.00 0.00 32.90 3.95
41 42 1.885163 CTGACGGTCCTAAGGGCGTT 61.885 60.000 5.55 0.00 32.90 4.84
42 43 2.283388 TGACGGTCCTAAGGGCGT 60.283 61.111 5.55 0.00 34.83 5.68
43 44 1.392710 ATCTGACGGTCCTAAGGGCG 61.393 60.000 5.55 0.00 0.00 6.13
44 45 0.389757 GATCTGACGGTCCTAAGGGC 59.610 60.000 5.55 0.00 0.00 5.19
45 46 1.041437 GGATCTGACGGTCCTAAGGG 58.959 60.000 5.55 0.00 0.00 3.95
46 47 1.041437 GGGATCTGACGGTCCTAAGG 58.959 60.000 5.55 0.00 34.84 2.69
47 48 0.669077 CGGGATCTGACGGTCCTAAG 59.331 60.000 5.55 0.00 34.84 2.18
48 49 0.256752 TCGGGATCTGACGGTCCTAA 59.743 55.000 5.55 0.00 34.84 2.69
49 50 0.477204 ATCGGGATCTGACGGTCCTA 59.523 55.000 5.55 0.00 34.84 2.94
50 51 0.824182 GATCGGGATCTGACGGTCCT 60.824 60.000 5.55 0.00 34.33 3.85
51 52 1.107538 TGATCGGGATCTGACGGTCC 61.108 60.000 5.55 0.00 39.36 4.46
52 53 0.744874 TTGATCGGGATCTGACGGTC 59.255 55.000 9.84 0.00 40.45 4.79
53 54 1.134788 GTTTGATCGGGATCTGACGGT 60.135 52.381 9.84 0.00 38.60 4.83
54 55 1.571919 GTTTGATCGGGATCTGACGG 58.428 55.000 9.84 0.00 38.60 4.79
55 56 1.200483 CGTTTGATCGGGATCTGACG 58.800 55.000 16.62 16.62 38.92 4.35
56 57 0.931005 GCGTTTGATCGGGATCTGAC 59.069 55.000 9.84 7.34 38.60 3.51
57 58 0.534873 TGCGTTTGATCGGGATCTGA 59.465 50.000 9.84 0.00 38.60 3.27
58 59 1.262417 CATGCGTTTGATCGGGATCTG 59.738 52.381 9.84 0.00 38.60 2.90
59 60 1.138859 TCATGCGTTTGATCGGGATCT 59.861 47.619 9.84 0.00 38.60 2.75
60 61 1.261619 GTCATGCGTTTGATCGGGATC 59.738 52.381 1.69 1.69 38.29 3.36
61 62 1.299541 GTCATGCGTTTGATCGGGAT 58.700 50.000 0.00 0.00 0.00 3.85
62 63 0.036858 TGTCATGCGTTTGATCGGGA 60.037 50.000 0.00 0.00 0.00 5.14
63 64 0.374758 CTGTCATGCGTTTGATCGGG 59.625 55.000 0.00 0.00 0.00 5.14
64 65 1.078709 ACTGTCATGCGTTTGATCGG 58.921 50.000 0.00 0.00 0.00 4.18
65 66 2.880822 AACTGTCATGCGTTTGATCG 57.119 45.000 0.00 0.00 0.00 3.69
66 67 4.928661 AGTAACTGTCATGCGTTTGATC 57.071 40.909 0.00 0.00 0.00 2.92
67 68 6.198403 CGTATAGTAACTGTCATGCGTTTGAT 59.802 38.462 0.00 0.00 0.00 2.57
68 69 5.513849 CGTATAGTAACTGTCATGCGTTTGA 59.486 40.000 0.00 0.00 0.00 2.69
69 70 5.714272 CGTATAGTAACTGTCATGCGTTTG 58.286 41.667 0.00 0.00 0.00 2.93
70 71 4.266976 GCGTATAGTAACTGTCATGCGTTT 59.733 41.667 0.00 0.00 0.00 3.60
71 72 3.795101 GCGTATAGTAACTGTCATGCGTT 59.205 43.478 0.00 0.00 0.00 4.84
72 73 3.181494 TGCGTATAGTAACTGTCATGCGT 60.181 43.478 0.00 0.00 0.00 5.24
73 74 3.368495 TGCGTATAGTAACTGTCATGCG 58.632 45.455 0.00 0.00 0.00 4.73
74 75 3.182572 GCTGCGTATAGTAACTGTCATGC 59.817 47.826 0.00 0.00 0.00 4.06
75 76 3.422217 CGCTGCGTATAGTAACTGTCATG 59.578 47.826 14.93 0.00 0.00 3.07
76 77 3.066342 ACGCTGCGTATAGTAACTGTCAT 59.934 43.478 27.89 0.00 38.73 3.06
77 78 2.421073 ACGCTGCGTATAGTAACTGTCA 59.579 45.455 27.89 0.00 38.73 3.58
78 79 2.782192 CACGCTGCGTATAGTAACTGTC 59.218 50.000 28.47 0.00 38.32 3.51
79 80 2.793933 CACGCTGCGTATAGTAACTGT 58.206 47.619 28.47 0.00 38.32 3.55
80 81 1.517276 GCACGCTGCGTATAGTAACTG 59.483 52.381 28.47 12.97 38.32 3.16
81 82 1.535437 GGCACGCTGCGTATAGTAACT 60.535 52.381 28.47 0.00 46.21 2.24
82 83 0.850856 GGCACGCTGCGTATAGTAAC 59.149 55.000 28.47 10.65 46.21 2.50
83 84 0.456628 TGGCACGCTGCGTATAGTAA 59.543 50.000 28.47 7.66 46.21 2.24
84 85 0.456628 TTGGCACGCTGCGTATAGTA 59.543 50.000 28.47 9.80 46.21 1.82
85 86 0.390603 TTTGGCACGCTGCGTATAGT 60.391 50.000 28.47 0.95 46.21 2.12
86 87 0.937304 ATTTGGCACGCTGCGTATAG 59.063 50.000 28.47 16.71 46.21 1.31
87 88 1.374560 AATTTGGCACGCTGCGTATA 58.625 45.000 28.47 13.83 46.21 1.47
88 89 0.525761 AAATTTGGCACGCTGCGTAT 59.474 45.000 28.47 14.44 46.21 3.06
89 90 0.312416 AAAATTTGGCACGCTGCGTA 59.688 45.000 28.47 12.53 46.21 4.42
90 91 0.939106 GAAAATTTGGCACGCTGCGT 60.939 50.000 23.57 23.57 46.21 5.24
91 92 0.664166 AGAAAATTTGGCACGCTGCG 60.664 50.000 21.91 21.91 46.21 5.18
92 93 0.785979 CAGAAAATTTGGCACGCTGC 59.214 50.000 0.00 1.92 44.08 5.25
93 94 0.785979 GCAGAAAATTTGGCACGCTG 59.214 50.000 0.00 0.00 0.00 5.18
94 95 0.319813 GGCAGAAAATTTGGCACGCT 60.320 50.000 10.66 0.00 40.50 5.07
95 96 0.599728 TGGCAGAAAATTTGGCACGC 60.600 50.000 10.66 5.19 44.86 5.34
96 97 3.584586 TGGCAGAAAATTTGGCACG 57.415 47.368 10.66 0.00 44.86 5.34
99 100 4.898829 AAAAAGTGGCAGAAAATTTGGC 57.101 36.364 0.00 0.00 41.12 4.52
117 118 7.169982 CCCGAAAATTGCAATGTAGTACAAAAA 59.830 33.333 13.82 0.40 0.00 1.94
118 119 6.642950 CCCGAAAATTGCAATGTAGTACAAAA 59.357 34.615 13.82 0.75 0.00 2.44
119 120 6.153067 CCCGAAAATTGCAATGTAGTACAAA 58.847 36.000 13.82 0.00 0.00 2.83
120 121 5.241949 ACCCGAAAATTGCAATGTAGTACAA 59.758 36.000 13.82 0.00 0.00 2.41
121 122 4.762765 ACCCGAAAATTGCAATGTAGTACA 59.237 37.500 13.82 5.24 0.00 2.90
122 123 5.305139 ACCCGAAAATTGCAATGTAGTAC 57.695 39.130 13.82 0.00 0.00 2.73
123 124 5.336055 CCAACCCGAAAATTGCAATGTAGTA 60.336 40.000 13.82 0.00 0.00 1.82
124 125 4.555262 CAACCCGAAAATTGCAATGTAGT 58.445 39.130 13.82 0.81 0.00 2.73
125 126 3.925913 CCAACCCGAAAATTGCAATGTAG 59.074 43.478 13.82 5.40 0.00 2.74
126 127 3.574396 TCCAACCCGAAAATTGCAATGTA 59.426 39.130 13.82 0.00 0.00 2.29
127 128 2.366916 TCCAACCCGAAAATTGCAATGT 59.633 40.909 13.82 3.97 0.00 2.71
128 129 2.995258 CTCCAACCCGAAAATTGCAATG 59.005 45.455 13.82 1.37 0.00 2.82
129 130 2.612721 GCTCCAACCCGAAAATTGCAAT 60.613 45.455 5.99 5.99 0.00 3.56
130 131 1.270041 GCTCCAACCCGAAAATTGCAA 60.270 47.619 0.00 0.00 0.00 4.08
131 132 0.316841 GCTCCAACCCGAAAATTGCA 59.683 50.000 0.00 0.00 0.00 4.08
132 133 0.316841 TGCTCCAACCCGAAAATTGC 59.683 50.000 0.00 0.00 0.00 3.56
133 134 4.448537 TTATGCTCCAACCCGAAAATTG 57.551 40.909 0.00 0.00 0.00 2.32
134 135 5.476091 TTTTATGCTCCAACCCGAAAATT 57.524 34.783 0.00 0.00 0.00 1.82
135 136 5.476091 TTTTTATGCTCCAACCCGAAAAT 57.524 34.783 0.00 0.00 0.00 1.82
136 137 4.939052 TTTTTATGCTCCAACCCGAAAA 57.061 36.364 0.00 0.00 0.00 2.29
182 183 9.502145 GTCAGATTATCATGCGAAAACAAATAA 57.498 29.630 0.00 0.00 0.00 1.40
183 184 7.850492 CGTCAGATTATCATGCGAAAACAAATA 59.150 33.333 0.00 0.00 0.00 1.40
184 185 6.688385 CGTCAGATTATCATGCGAAAACAAAT 59.312 34.615 0.00 0.00 0.00 2.32
185 186 6.020984 CGTCAGATTATCATGCGAAAACAAA 58.979 36.000 0.00 0.00 0.00 2.83
186 187 5.559227 CGTCAGATTATCATGCGAAAACAA 58.441 37.500 0.00 0.00 0.00 2.83
187 188 4.494035 GCGTCAGATTATCATGCGAAAACA 60.494 41.667 0.00 0.00 0.00 2.83
188 189 3.962481 GCGTCAGATTATCATGCGAAAAC 59.038 43.478 0.00 0.00 0.00 2.43
189 190 3.002246 GGCGTCAGATTATCATGCGAAAA 59.998 43.478 0.00 0.00 0.00 2.29
190 191 2.543848 GGCGTCAGATTATCATGCGAAA 59.456 45.455 0.00 0.00 0.00 3.46
191 192 2.135139 GGCGTCAGATTATCATGCGAA 58.865 47.619 0.00 0.00 0.00 4.70
192 193 1.605457 GGGCGTCAGATTATCATGCGA 60.605 52.381 0.00 0.00 0.00 5.10
193 194 0.792640 GGGCGTCAGATTATCATGCG 59.207 55.000 0.00 0.00 0.00 4.73
194 195 2.175878 AGGGCGTCAGATTATCATGC 57.824 50.000 0.00 0.00 0.00 4.06
195 196 5.505173 AAAAAGGGCGTCAGATTATCATG 57.495 39.130 0.00 0.00 0.00 3.07
248 249 5.245301 TCTTTAATTCACTCGGACCTCTTGA 59.755 40.000 0.00 0.00 0.00 3.02
276 277 5.877012 AGTTCATTGCACTACAACTCATAGG 59.123 40.000 0.00 0.00 42.27 2.57
277 278 6.815641 AGAGTTCATTGCACTACAACTCATAG 59.184 38.462 20.94 0.00 43.62 2.23
283 284 6.426937 TCCTAAAGAGTTCATTGCACTACAAC 59.573 38.462 0.00 0.00 42.27 3.32
430 435 7.539034 TGACATATTAGTATTAGCAGCTGGA 57.461 36.000 17.12 0.00 0.00 3.86
431 436 7.201591 GCATGACATATTAGTATTAGCAGCTGG 60.202 40.741 17.12 0.00 0.00 4.85
432 437 7.332678 TGCATGACATATTAGTATTAGCAGCTG 59.667 37.037 10.11 10.11 0.00 4.24
515 527 5.246145 ACGTAGGTCTAGCATTACTCAAC 57.754 43.478 0.00 0.00 0.00 3.18
516 528 5.530171 CCTACGTAGGTCTAGCATTACTCAA 59.470 44.000 30.04 0.00 38.69 3.02
517 529 5.061853 CCTACGTAGGTCTAGCATTACTCA 58.938 45.833 30.04 0.00 38.69 3.41
518 530 4.455190 CCCTACGTAGGTCTAGCATTACTC 59.545 50.000 33.97 0.00 42.03 2.59
519 531 4.103785 TCCCTACGTAGGTCTAGCATTACT 59.896 45.833 33.97 0.00 42.03 2.24
520 532 4.392940 TCCCTACGTAGGTCTAGCATTAC 58.607 47.826 33.97 0.00 42.03 1.89
521 533 4.712051 TCCCTACGTAGGTCTAGCATTA 57.288 45.455 33.97 9.91 42.03 1.90
522 534 3.589951 TCCCTACGTAGGTCTAGCATT 57.410 47.619 33.97 0.00 42.03 3.56
523 535 3.810721 ATCCCTACGTAGGTCTAGCAT 57.189 47.619 33.97 16.12 42.03 3.79
524 536 3.137913 AGAATCCCTACGTAGGTCTAGCA 59.862 47.826 33.97 14.77 42.03 3.49
525 537 3.753815 AGAATCCCTACGTAGGTCTAGC 58.246 50.000 33.97 20.90 42.03 3.42
526 538 5.407995 CGTAAGAATCCCTACGTAGGTCTAG 59.592 48.000 33.97 21.54 40.35 2.43
527 539 5.163301 ACGTAAGAATCCCTACGTAGGTCTA 60.163 44.000 33.97 21.88 45.65 2.59
528 540 4.133078 CGTAAGAATCCCTACGTAGGTCT 58.867 47.826 33.97 27.49 40.35 3.85
529 541 3.879892 ACGTAAGAATCCCTACGTAGGTC 59.120 47.826 33.97 25.96 45.65 3.85
530 542 3.891049 ACGTAAGAATCCCTACGTAGGT 58.109 45.455 33.97 20.06 45.65 3.08
533 545 7.254319 CGTAAAGTACGTAAGAATCCCTACGTA 60.254 40.741 16.47 16.47 45.65 3.57
535 547 5.904080 CGTAAAGTACGTAAGAATCCCTACG 59.096 44.000 0.00 9.94 46.41 3.51
552 564 8.999431 ACTGACAAATCATCAATTACGTAAAGT 58.001 29.630 12.81 3.07 33.22 2.66
553 565 9.825972 AACTGACAAATCATCAATTACGTAAAG 57.174 29.630 12.81 8.35 33.22 1.85
563 575 9.743057 ACGAATTAAAAACTGACAAATCATCAA 57.257 25.926 0.00 0.00 33.22 2.57
564 576 9.393249 GACGAATTAAAAACTGACAAATCATCA 57.607 29.630 0.00 0.00 33.22 3.07
565 577 9.393249 TGACGAATTAAAAACTGACAAATCATC 57.607 29.630 0.00 0.00 33.22 2.92
566 578 9.912634 ATGACGAATTAAAAACTGACAAATCAT 57.087 25.926 0.00 0.00 33.22 2.45
567 579 9.743057 AATGACGAATTAAAAACTGACAAATCA 57.257 25.926 0.00 0.00 0.00 2.57
572 584 9.658475 CAACTAATGACGAATTAAAAACTGACA 57.342 29.630 0.00 0.00 30.24 3.58
573 585 9.113876 CCAACTAATGACGAATTAAAAACTGAC 57.886 33.333 0.00 0.00 30.24 3.51
574 586 8.293867 CCCAACTAATGACGAATTAAAAACTGA 58.706 33.333 0.00 0.00 30.24 3.41
575 587 7.540745 CCCCAACTAATGACGAATTAAAAACTG 59.459 37.037 0.00 0.00 30.24 3.16
576 588 7.309560 CCCCCAACTAATGACGAATTAAAAACT 60.310 37.037 0.00 0.00 30.24 2.66
577 589 6.809689 CCCCCAACTAATGACGAATTAAAAAC 59.190 38.462 0.00 0.00 30.24 2.43
578 590 6.572703 GCCCCCAACTAATGACGAATTAAAAA 60.573 38.462 0.00 0.00 30.24 1.94
579 591 5.105675 GCCCCCAACTAATGACGAATTAAAA 60.106 40.000 0.00 0.00 30.24 1.52
580 592 4.399934 GCCCCCAACTAATGACGAATTAAA 59.600 41.667 0.00 0.00 30.24 1.52
581 593 3.949113 GCCCCCAACTAATGACGAATTAA 59.051 43.478 0.00 0.00 30.24 1.40
582 594 3.054287 TGCCCCCAACTAATGACGAATTA 60.054 43.478 0.00 0.00 0.00 1.40
583 595 2.291282 TGCCCCCAACTAATGACGAATT 60.291 45.455 0.00 0.00 0.00 2.17
584 596 1.283613 TGCCCCCAACTAATGACGAAT 59.716 47.619 0.00 0.00 0.00 3.34
585 597 0.693622 TGCCCCCAACTAATGACGAA 59.306 50.000 0.00 0.00 0.00 3.85
586 598 0.035820 GTGCCCCCAACTAATGACGA 60.036 55.000 0.00 0.00 0.00 4.20
587 599 1.366111 CGTGCCCCCAACTAATGACG 61.366 60.000 0.00 0.00 0.00 4.35
588 600 1.029947 CCGTGCCCCCAACTAATGAC 61.030 60.000 0.00 0.00 0.00 3.06
589 601 1.301623 CCGTGCCCCCAACTAATGA 59.698 57.895 0.00 0.00 0.00 2.57
590 602 1.001393 ACCGTGCCCCCAACTAATG 60.001 57.895 0.00 0.00 0.00 1.90
591 603 1.301954 GACCGTGCCCCCAACTAAT 59.698 57.895 0.00 0.00 0.00 1.73
592 604 2.751688 GACCGTGCCCCCAACTAA 59.248 61.111 0.00 0.00 0.00 2.24
593 605 3.324108 GGACCGTGCCCCCAACTA 61.324 66.667 0.00 0.00 0.00 2.24
601 613 2.969300 TTTCAAGGGTGGACCGTGCC 62.969 60.000 0.00 0.00 46.81 5.01
602 614 0.893727 ATTTCAAGGGTGGACCGTGC 60.894 55.000 0.00 0.00 46.81 5.34
604 616 0.768622 TGATTTCAAGGGTGGACCGT 59.231 50.000 0.00 0.00 46.96 4.83
605 617 1.453155 CTGATTTCAAGGGTGGACCG 58.547 55.000 0.00 0.00 46.96 4.79
606 618 1.616994 CCCTGATTTCAAGGGTGGACC 60.617 57.143 0.00 0.00 38.06 4.46
607 619 1.616994 CCCCTGATTTCAAGGGTGGAC 60.617 57.143 6.13 0.00 41.68 4.02
608 620 0.704076 CCCCTGATTTCAAGGGTGGA 59.296 55.000 6.13 0.00 41.68 4.02
609 621 0.324645 CCCCCTGATTTCAAGGGTGG 60.325 60.000 12.28 4.98 44.47 4.61
610 622 3.288099 CCCCCTGATTTCAAGGGTG 57.712 57.895 12.28 2.04 44.47 4.61
627 639 0.455815 CGCTAATCAAAACTGCCCCC 59.544 55.000 0.00 0.00 0.00 5.40
628 640 1.173913 ACGCTAATCAAAACTGCCCC 58.826 50.000 0.00 0.00 0.00 5.80
629 641 3.297830 AAACGCTAATCAAAACTGCCC 57.702 42.857 0.00 0.00 0.00 5.36
630 642 3.851969 GCTAAACGCTAATCAAAACTGCC 59.148 43.478 0.00 0.00 35.14 4.85
631 643 4.472286 TGCTAAACGCTAATCAAAACTGC 58.528 39.130 0.00 0.00 40.11 4.40
632 644 6.984740 TTTGCTAAACGCTAATCAAAACTG 57.015 33.333 0.00 0.00 40.11 3.16
640 652 4.939509 ACGTGATTTGCTAAACGCTAAT 57.060 36.364 5.26 0.00 44.74 1.73
641 653 4.327898 CCTACGTGATTTGCTAAACGCTAA 59.672 41.667 0.00 0.00 39.58 3.09
642 654 3.861113 CCTACGTGATTTGCTAAACGCTA 59.139 43.478 0.00 0.00 39.58 4.26
643 655 2.671396 CCTACGTGATTTGCTAAACGCT 59.329 45.455 0.00 0.00 39.58 5.07
644 656 2.414138 ACCTACGTGATTTGCTAAACGC 59.586 45.455 0.00 0.00 39.58 4.84
645 657 4.657075 AACCTACGTGATTTGCTAAACG 57.343 40.909 0.00 4.02 41.64 3.60
646 658 5.544621 CGTAACCTACGTGATTTGCTAAAC 58.455 41.667 0.00 0.00 46.41 2.01
647 659 5.766702 CGTAACCTACGTGATTTGCTAAA 57.233 39.130 0.00 0.00 46.41 1.85
660 672 2.636768 ACGGCACTTACGTAACCTAC 57.363 50.000 3.29 0.00 43.60 3.18
661 673 2.414029 CGAACGGCACTTACGTAACCTA 60.414 50.000 3.29 0.00 44.83 3.08
662 674 1.666888 CGAACGGCACTTACGTAACCT 60.667 52.381 3.29 0.00 44.83 3.50
663 675 0.710017 CGAACGGCACTTACGTAACC 59.290 55.000 3.29 3.63 44.83 2.85
664 676 1.408422 ACGAACGGCACTTACGTAAC 58.592 50.000 3.29 0.00 44.83 2.50
665 677 2.414029 CCTACGAACGGCACTTACGTAA 60.414 50.000 7.94 7.94 44.83 3.18
666 678 1.130373 CCTACGAACGGCACTTACGTA 59.870 52.381 0.00 0.00 44.83 3.57
668 680 0.109597 ACCTACGAACGGCACTTACG 60.110 55.000 0.00 0.00 37.36 3.18
669 681 1.336240 ACACCTACGAACGGCACTTAC 60.336 52.381 0.00 0.00 0.00 2.34
670 682 0.961019 ACACCTACGAACGGCACTTA 59.039 50.000 0.00 0.00 0.00 2.24
671 683 0.961019 TACACCTACGAACGGCACTT 59.039 50.000 0.00 0.00 0.00 3.16
672 684 0.524862 CTACACCTACGAACGGCACT 59.475 55.000 0.00 0.00 0.00 4.40
673 685 1.074872 GCTACACCTACGAACGGCAC 61.075 60.000 0.00 0.00 0.00 5.01
674 686 1.213537 GCTACACCTACGAACGGCA 59.786 57.895 0.00 0.00 0.00 5.69
675 687 0.179119 ATGCTACACCTACGAACGGC 60.179 55.000 0.00 0.00 0.00 5.68
676 688 2.288961 AATGCTACACCTACGAACGG 57.711 50.000 0.00 0.00 0.00 4.44
677 689 5.311016 CAATAATGCTACACCTACGAACG 57.689 43.478 0.00 0.00 0.00 3.95
692 704 7.201548 GCTTGGGTGAAACATTTAGCAATAATG 60.202 37.037 0.00 0.00 39.98 1.90
693 705 6.818142 GCTTGGGTGAAACATTTAGCAATAAT 59.182 34.615 0.00 0.00 39.98 1.28
694 706 6.162777 GCTTGGGTGAAACATTTAGCAATAA 58.837 36.000 0.00 0.00 39.98 1.40
695 707 5.244851 TGCTTGGGTGAAACATTTAGCAATA 59.755 36.000 0.00 0.00 39.98 1.90
696 708 4.040217 TGCTTGGGTGAAACATTTAGCAAT 59.960 37.500 0.00 0.00 39.98 3.56
697 709 3.386078 TGCTTGGGTGAAACATTTAGCAA 59.614 39.130 0.00 0.00 39.98 3.91
698 710 2.961741 TGCTTGGGTGAAACATTTAGCA 59.038 40.909 0.00 0.00 39.98 3.49
699 711 3.658757 TGCTTGGGTGAAACATTTAGC 57.341 42.857 0.00 0.00 39.98 3.09
700 712 5.452078 TCTTGCTTGGGTGAAACATTTAG 57.548 39.130 0.00 0.00 39.98 1.85
701 713 4.261994 GCTCTTGCTTGGGTGAAACATTTA 60.262 41.667 0.00 0.00 35.47 1.40
702 714 3.493176 GCTCTTGCTTGGGTGAAACATTT 60.493 43.478 0.00 0.00 35.47 2.32
703 715 2.036346 GCTCTTGCTTGGGTGAAACATT 59.964 45.455 0.00 0.00 35.47 2.71
704 716 1.615392 GCTCTTGCTTGGGTGAAACAT 59.385 47.619 0.00 0.00 35.47 2.71
705 717 1.032014 GCTCTTGCTTGGGTGAAACA 58.968 50.000 0.00 0.00 35.47 2.83
759 771 0.244721 AAGGCGAGAAATGCTTTGGC 59.755 50.000 0.00 0.00 39.26 4.52
773 785 1.814169 GCTACGGAGGGAAAAGGCG 60.814 63.158 0.00 0.00 0.00 5.52
868 883 2.848691 CAAAAGAGGCCCATTGCAAAA 58.151 42.857 1.71 0.00 43.89 2.44
886 901 0.321210 ATCGTGACCGTCCATTGCAA 60.321 50.000 0.00 0.00 35.01 4.08
887 902 0.321210 AATCGTGACCGTCCATTGCA 60.321 50.000 0.00 0.00 35.01 4.08
889 904 1.396996 GGAAATCGTGACCGTCCATTG 59.603 52.381 0.00 0.00 35.01 2.82
890 905 1.734163 GGAAATCGTGACCGTCCATT 58.266 50.000 0.00 0.00 35.01 3.16
891 906 0.459585 CGGAAATCGTGACCGTCCAT 60.460 55.000 0.00 0.00 41.47 3.41
892 907 1.080366 CGGAAATCGTGACCGTCCA 60.080 57.895 0.00 0.00 41.47 4.02
928 971 2.089201 GGGTTTTCGTGGATTAGTGGG 58.911 52.381 0.00 0.00 0.00 4.61
989 1032 4.840005 GAAAGCGGGCGGAGAGGG 62.840 72.222 0.00 0.00 0.00 4.30
990 1033 4.840005 GGAAAGCGGGCGGAGAGG 62.840 72.222 0.00 0.00 0.00 3.69
1112 1155 3.254654 CGCATCACACCGGCGTAG 61.255 66.667 6.01 0.00 45.27 3.51
1601 1650 3.680786 GGGGCGAAGTTGTTGGGC 61.681 66.667 0.00 0.00 36.36 5.36
1975 2024 4.640647 GGAGTGATACTGGGAATTGGAAAC 59.359 45.833 0.00 0.00 0.00 2.78
1981 2030 6.183361 GGACATAAGGAGTGATACTGGGAATT 60.183 42.308 0.00 0.00 0.00 2.17
1989 2038 4.650754 ACACGGACATAAGGAGTGATAC 57.349 45.455 0.69 0.00 36.71 2.24
2003 2052 6.492254 AGTAAACAATCAAAGAAACACGGAC 58.508 36.000 0.00 0.00 0.00 4.79
2040 2089 7.264947 TGATCATACGAACAACACATCTACAT 58.735 34.615 0.00 0.00 0.00 2.29
2041 2090 6.626302 TGATCATACGAACAACACATCTACA 58.374 36.000 0.00 0.00 0.00 2.74
2045 2094 4.568359 AGCTGATCATACGAACAACACATC 59.432 41.667 0.00 0.00 0.00 3.06
2056 2105 3.804325 CACAAGGGTAAGCTGATCATACG 59.196 47.826 0.00 0.00 0.00 3.06
2063 2112 1.651737 TAGCCACAAGGGTAAGCTGA 58.348 50.000 0.00 0.00 45.70 4.26
2162 2211 9.504708 AAGAAACCAATGCAAAAATCATCATTA 57.495 25.926 0.00 0.00 0.00 1.90
2175 2224 6.451393 GTGGTAATGTTAAGAAACCAATGCA 58.549 36.000 10.62 0.00 41.65 3.96
2180 2229 6.427547 CCTTACGTGGTAATGTTAAGAAACCA 59.572 38.462 0.00 6.20 37.88 3.67
2186 2235 6.806388 AAACCCTTACGTGGTAATGTTAAG 57.194 37.500 0.00 0.00 34.15 1.85
2187 2236 6.016443 CCAAAACCCTTACGTGGTAATGTTAA 60.016 38.462 0.00 0.00 34.15 2.01
2188 2237 5.472820 CCAAAACCCTTACGTGGTAATGTTA 59.527 40.000 0.00 0.00 34.15 2.41
2199 2248 2.299521 TGGTGAACCAAAACCCTTACG 58.700 47.619 0.00 0.00 44.35 3.18
2272 2322 6.273071 GCAACTTAAGTCAACCAGTTCAAAT 58.727 36.000 8.95 0.00 0.00 2.32
2273 2323 5.393678 GGCAACTTAAGTCAACCAGTTCAAA 60.394 40.000 8.95 0.00 0.00 2.69
2275 2325 3.630312 GGCAACTTAAGTCAACCAGTTCA 59.370 43.478 8.95 0.00 0.00 3.18
2328 2379 9.765795 ATACTGGTAGTGAACTGCTATTTATTC 57.234 33.333 0.00 0.00 0.00 1.75
2354 2406 8.748412 CCATGTACATTCCCTGAATAAGAAAAA 58.252 33.333 5.37 0.00 30.44 1.94
2367 2419 2.936202 AGCACATCCATGTACATTCCC 58.064 47.619 5.37 0.00 39.39 3.97
2429 2482 2.170166 GGCACCATGGAAGATGAACAA 58.830 47.619 21.47 0.00 0.00 2.83
2489 2543 8.492415 AATACCTGTGCTTCCTATATAACTCA 57.508 34.615 0.00 0.00 0.00 3.41
2493 2547 7.936847 CACCAAATACCTGTGCTTCCTATATAA 59.063 37.037 0.00 0.00 0.00 0.98
2791 2887 2.325583 ACGCCTCAAGACAGTCAAAA 57.674 45.000 2.66 0.00 0.00 2.44
2919 3015 7.233348 ACAATTTACTGGTTCCATGATTCACTT 59.767 33.333 0.00 0.00 0.00 3.16
2920 3016 6.721208 ACAATTTACTGGTTCCATGATTCACT 59.279 34.615 0.00 0.00 0.00 3.41
2939 3035 5.920273 CCTTCGACATAACAAGCAACAATTT 59.080 36.000 0.00 0.00 0.00 1.82
2940 3036 5.240623 TCCTTCGACATAACAAGCAACAATT 59.759 36.000 0.00 0.00 0.00 2.32
2941 3037 4.759693 TCCTTCGACATAACAAGCAACAAT 59.240 37.500 0.00 0.00 0.00 2.71
2945 3041 5.957842 AAATCCTTCGACATAACAAGCAA 57.042 34.783 0.00 0.00 0.00 3.91
2961 3057 8.834465 CAATCGACATCATTCTTAGAAAATCCT 58.166 33.333 0.00 0.00 0.00 3.24
2983 3079 2.681848 CACAGGATCTTGCAGGTCAATC 59.318 50.000 4.46 0.00 33.57 2.67
2985 3081 1.699083 TCACAGGATCTTGCAGGTCAA 59.301 47.619 4.46 0.00 0.00 3.18
2997 3093 3.381908 GGACTCACGTTAGATCACAGGAT 59.618 47.826 3.23 0.00 36.13 3.24
3019 3118 4.397481 TCAGAGTTCATACAGCATCAGG 57.603 45.455 0.00 0.00 0.00 3.86
3116 3216 4.497473 TTAACGCACAGCTAAGCAAAAT 57.503 36.364 9.84 0.00 0.00 1.82
3135 3235 2.750948 GGATCGTATGCGCTCCTTTTA 58.249 47.619 17.38 0.00 46.45 1.52
3188 3291 4.373116 TCGTGCGGAGTTGGCCTC 62.373 66.667 3.32 0.00 39.67 4.70
3231 3342 1.654023 GCCGCGGCCTATTTCAGTTT 61.654 55.000 39.89 0.00 34.56 2.66
3258 3369 0.174162 AGCCGGCATGAATTCTTTGC 59.826 50.000 31.54 19.51 35.64 3.68
3312 3423 4.380531 TGCGAGACATGAACTCTCTTTTT 58.619 39.130 17.24 0.00 33.25 1.94
3313 3424 3.993081 CTGCGAGACATGAACTCTCTTTT 59.007 43.478 17.24 0.00 33.25 2.27
3314 3425 3.006323 ACTGCGAGACATGAACTCTCTTT 59.994 43.478 17.24 4.23 33.25 2.52
3315 3426 2.560542 ACTGCGAGACATGAACTCTCTT 59.439 45.455 17.24 4.48 33.25 2.85
3316 3427 2.163412 GACTGCGAGACATGAACTCTCT 59.837 50.000 17.24 3.41 33.25 3.10
3317 3428 2.525055 GACTGCGAGACATGAACTCTC 58.475 52.381 17.24 10.89 32.87 3.20
3318 3429 1.203523 GGACTGCGAGACATGAACTCT 59.796 52.381 17.24 4.05 32.87 3.24
3319 3430 1.203523 AGGACTGCGAGACATGAACTC 59.796 52.381 0.00 7.14 0.00 3.01
3351 3462 7.260603 GCCAAGAGCAATATCATTTTGTAAGT 58.739 34.615 0.00 0.00 42.97 2.24
3377 3488 6.155827 GCTCGAGCTAAATGATTGATCTACT 58.844 40.000 29.88 0.00 38.21 2.57
3382 3493 4.694509 GGATGCTCGAGCTAAATGATTGAT 59.305 41.667 35.27 17.91 42.66 2.57
3404 3515 2.867109 TCAAGAAGAAGCAGAAGGGG 57.133 50.000 0.00 0.00 0.00 4.79
3405 3516 4.330250 TGATTCAAGAAGAAGCAGAAGGG 58.670 43.478 0.00 0.00 46.84 3.95
3413 3526 6.714356 AGAGAAGGGTTTGATTCAAGAAGAAG 59.286 38.462 0.00 0.00 40.15 2.85
3421 3534 5.065914 CACTCAAGAGAAGGGTTTGATTCA 58.934 41.667 3.73 0.00 31.11 2.57
3425 3538 3.454447 TGTCACTCAAGAGAAGGGTTTGA 59.546 43.478 3.73 0.00 0.00 2.69
3440 3553 2.191128 ATTGGAGCAAGGTGTCACTC 57.809 50.000 2.35 0.00 0.00 3.51
3447 3560 1.615392 GTTGAGCAATTGGAGCAAGGT 59.385 47.619 7.72 0.00 0.00 3.50
3448 3561 1.891150 AGTTGAGCAATTGGAGCAAGG 59.109 47.619 7.72 0.00 0.00 3.61
3452 3565 1.200948 GTGGAGTTGAGCAATTGGAGC 59.799 52.381 7.72 0.00 0.00 4.70
3453 3566 1.815003 GGTGGAGTTGAGCAATTGGAG 59.185 52.381 7.72 0.00 0.00 3.86
3454 3567 1.881925 CGGTGGAGTTGAGCAATTGGA 60.882 52.381 7.72 0.00 0.00 3.53
3455 3568 0.523072 CGGTGGAGTTGAGCAATTGG 59.477 55.000 7.72 0.00 0.00 3.16
3456 3569 0.109597 GCGGTGGAGTTGAGCAATTG 60.110 55.000 0.00 0.00 0.00 2.32
3457 3570 1.244019 GGCGGTGGAGTTGAGCAATT 61.244 55.000 0.00 0.00 0.00 2.32
3458 3571 1.675641 GGCGGTGGAGTTGAGCAAT 60.676 57.895 0.00 0.00 0.00 3.56
3493 6037 4.984161 AGATTGAAGCAACCAATGTTTTCG 59.016 37.500 3.49 0.00 34.67 3.46
3506 6050 3.434641 CGAAGAAGCTCAAGATTGAAGCA 59.565 43.478 14.87 0.00 36.64 3.91
3517 6061 2.426522 CCATCCAAACGAAGAAGCTCA 58.573 47.619 0.00 0.00 0.00 4.26
3535 6079 2.676232 CTCAAGACTGAGGAGGCCA 58.324 57.895 5.01 0.00 44.72 5.36
3550 6094 1.270839 CCGTCAAAAGGAGGAAGCTCA 60.271 52.381 0.00 0.00 33.18 4.26
3575 6119 1.340248 ACGAAGAAGCTCGAGGTGAAA 59.660 47.619 19.39 0.00 41.44 2.69
3577 6121 0.959553 AACGAAGAAGCTCGAGGTGA 59.040 50.000 19.39 0.00 41.44 4.02
3580 6124 1.071605 CCAAACGAAGAAGCTCGAGG 58.928 55.000 15.58 0.00 41.44 4.63
3607 6151 3.118956 AGAGGAGCAAATGAAGGTCTACG 60.119 47.826 0.00 0.00 34.14 3.51
3640 6184 2.333417 ACGAGGCGAGAGAAAGCGA 61.333 57.895 0.00 0.00 0.00 4.93
3653 6197 0.537371 ACCCAAAAGGAAGCACGAGG 60.537 55.000 0.00 0.00 39.89 4.63
3663 6207 1.856629 AGGCATGATGACCCAAAAGG 58.143 50.000 0.00 0.00 43.78 3.11
3693 6237 1.216178 GCATCGTTGGCCTTGCAAT 59.784 52.632 3.32 0.00 35.22 3.56
3703 6247 1.581912 GCGTGATGCAGCATCGTTG 60.582 57.895 26.79 19.95 43.14 4.10
3796 6340 0.887933 GCCGCCCAAAAGAAGAATGA 59.112 50.000 0.00 0.00 0.00 2.57
3863 6407 1.212195 GGTAACCATTCACTCTCCCCC 59.788 57.143 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.