Multiple sequence alignment - TraesCS3B01G297200

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G297200 chr3B 100.000 4378 0 0 1 4378 476297381 476293004 0.000000e+00 8085.0
1 TraesCS3B01G297200 chr3B 100.000 4292 0 0 4640 8931 476292742 476288451 0.000000e+00 7926.0
2 TraesCS3B01G297200 chr3B 99.354 774 5 0 5147 5920 659593418 659594191 0.000000e+00 1402.0
3 TraesCS3B01G297200 chr3B 90.405 469 35 4 2 462 754209657 754210123 7.670000e-170 608.0
4 TraesCS3B01G297200 chr3B 92.405 79 6 0 4842 4920 204291160 204291082 7.330000e-21 113.0
5 TraesCS3B01G297200 chr3B 100.000 29 0 0 720 748 746360502 746360530 5.000000e-03 54.7
6 TraesCS3B01G297200 chr3D 97.716 2364 41 8 2018 4378 365793140 365790787 0.000000e+00 4054.0
7 TraesCS3B01G297200 chr3D 95.251 2274 82 10 5917 8176 365789834 365787573 0.000000e+00 3578.0
8 TraesCS3B01G297200 chr3D 92.965 1194 34 10 852 2017 365799234 365798063 0.000000e+00 1694.0
9 TraesCS3B01G297200 chr3D 94.622 502 16 4 4640 5141 365790320 365789830 0.000000e+00 767.0
10 TraesCS3B01G297200 chr3D 91.684 469 31 5 2 462 542834368 542833900 2.100000e-180 643.0
11 TraesCS3B01G297200 chr3D 90.832 469 35 6 2 462 478119908 478119440 9.850000e-174 621.0
12 TraesCS3B01G297200 chr3D 88.210 458 44 7 2 450 574245354 574245810 1.020000e-148 538.0
13 TraesCS3B01G297200 chr3D 97.368 76 2 0 778 853 365799470 365799395 7.280000e-26 130.0
14 TraesCS3B01G297200 chr3D 94.872 39 2 0 5931 5969 135376565 135376527 2.690000e-05 62.1
15 TraesCS3B01G297200 chr3D 100.000 33 0 0 5931 5963 370110054 370110022 2.690000e-05 62.1
16 TraesCS3B01G297200 chr3D 97.143 35 1 0 5931 5965 81825863 81825829 9.680000e-05 60.2
17 TraesCS3B01G297200 chr3D 94.737 38 2 0 5932 5969 131489197 131489160 9.680000e-05 60.2
18 TraesCS3B01G297200 chr3D 100.000 28 0 0 467 494 159563822 159563849 1.600000e-02 52.8
19 TraesCS3B01G297200 chr3A 95.451 2264 83 12 5916 8176 487459532 487457286 0.000000e+00 3592.0
20 TraesCS3B01G297200 chr3A 95.370 2268 65 10 2028 4292 487462770 487460540 0.000000e+00 3570.0
21 TraesCS3B01G297200 chr3A 93.824 1020 43 7 778 1785 487464047 487463036 0.000000e+00 1517.0
22 TraesCS3B01G297200 chr3A 96.569 408 14 0 4640 5047 487459996 487459589 0.000000e+00 676.0
23 TraesCS3B01G297200 chr3A 95.763 118 5 0 2018 2135 487462925 487462808 3.290000e-44 191.0
24 TraesCS3B01G297200 chr3A 96.721 61 1 1 4319 4378 487460541 487460481 5.710000e-17 100.0
25 TraesCS3B01G297200 chr3A 90.000 70 7 0 463 532 726504238 726504307 3.430000e-14 91.6
26 TraesCS3B01G297200 chr3A 94.872 39 2 0 5931 5969 150715921 150715883 2.690000e-05 62.1
27 TraesCS3B01G297200 chr3A 92.857 42 0 3 5920 5961 746265271 746265309 3.480000e-04 58.4
28 TraesCS3B01G297200 chr5A 99.612 774 3 0 5147 5920 174601595 174600822 0.000000e+00 1413.0
29 TraesCS3B01G297200 chr5A 89.126 469 43 6 2 462 26567628 26568096 2.160000e-160 577.0
30 TraesCS3B01G297200 chr5A 91.250 80 7 0 4841 4920 255600558 255600637 9.480000e-20 110.0
31 TraesCS3B01G297200 chr5A 84.000 75 7 4 461 535 384215678 384215609 5.790000e-07 67.6
32 TraesCS3B01G297200 chr2A 99.612 774 3 0 5147 5920 518944216 518943443 0.000000e+00 1413.0
33 TraesCS3B01G297200 chr2A 99.099 777 4 2 5147 5920 676079646 676078870 0.000000e+00 1393.0
34 TraesCS3B01G297200 chr2A 95.349 43 1 1 5928 5969 738435354 738435396 5.790000e-07 67.6
35 TraesCS3B01G297200 chr6B 99.483 774 4 0 5147 5920 606303265 606302492 0.000000e+00 1408.0
36 TraesCS3B01G297200 chr6B 93.816 760 43 2 8176 8931 481877767 481877008 0.000000e+00 1140.0
37 TraesCS3B01G297200 chr6B 88.060 469 45 8 2 462 197818015 197818480 6.100000e-151 545.0
38 TraesCS3B01G297200 chr6B 86.730 211 16 7 4945 5154 475722684 475722883 3.240000e-54 224.0
39 TraesCS3B01G297200 chr6B 92.405 79 6 0 4842 4920 158857616 158857694 7.330000e-21 113.0
40 TraesCS3B01G297200 chr6B 90.196 51 3 2 5930 5978 530560431 530560481 2.080000e-06 65.8
41 TraesCS3B01G297200 chr6B 95.000 40 1 1 5931 5969 518389039 518389078 2.690000e-05 62.1
42 TraesCS3B01G297200 chr2B 99.482 772 4 0 5149 5920 46596964 46597735 0.000000e+00 1404.0
43 TraesCS3B01G297200 chr2B 90.213 470 36 5 2 462 72759505 72759037 9.920000e-169 604.0
44 TraesCS3B01G297200 chr2B 88.723 470 44 6 2 462 90448979 90448510 4.680000e-157 566.0
45 TraesCS3B01G297200 chr2B 87.624 202 14 6 4944 5144 121669699 121669508 3.240000e-54 224.0
46 TraesCS3B01G297200 chr2B 92.754 69 5 0 463 531 768288518 768288450 5.710000e-17 100.0
47 TraesCS3B01G297200 chr2B 93.333 45 0 3 5920 5964 93997835 93997794 7.490000e-06 63.9
48 TraesCS3B01G297200 chr7A 99.481 770 4 0 5151 5920 495455515 495454746 0.000000e+00 1400.0
49 TraesCS3B01G297200 chr7A 100.000 29 0 0 720 748 89678461 89678433 5.000000e-03 54.7
50 TraesCS3B01G297200 chr5B 99.226 775 3 2 5149 5920 48316278 48315504 0.000000e+00 1395.0
51 TraesCS3B01G297200 chr5B 93.955 761 40 4 8176 8931 262801128 262800369 0.000000e+00 1146.0
52 TraesCS3B01G297200 chr5B 93.816 760 43 2 8176 8931 289550881 289550122 0.000000e+00 1140.0
53 TraesCS3B01G297200 chr5B 91.471 469 32 2 2 462 478553357 478553825 9.780000e-179 638.0
54 TraesCS3B01G297200 chr5B 90.088 454 39 5 2 450 709365233 709365685 1.290000e-162 584.0
55 TraesCS3B01G297200 chr5B 89.316 468 41 6 3 462 278889732 278889266 6.010000e-161 579.0
56 TraesCS3B01G297200 chr5B 88.273 469 47 5 2 462 315917758 315918226 1.010000e-153 555.0
57 TraesCS3B01G297200 chr5B 89.231 195 12 4 4948 5142 114213838 114214023 1.500000e-57 235.0
58 TraesCS3B01G297200 chr5B 86.792 53 5 2 5913 5965 291791234 291791284 3.480000e-04 58.4
59 TraesCS3B01G297200 chr5B 100.000 29 0 0 721 749 575609442 575609414 5.000000e-03 54.7
60 TraesCS3B01G297200 chr4B 98.606 789 6 4 5136 5920 322670120 322670907 0.000000e+00 1391.0
61 TraesCS3B01G297200 chr4B 93.947 760 42 2 8176 8931 99453481 99454240 0.000000e+00 1146.0
62 TraesCS3B01G297200 chr4B 87.898 471 44 9 2 462 40833549 40834016 7.890000e-150 542.0
63 TraesCS3B01G297200 chr4B 98.438 64 1 0 6299 6362 142929753 142929690 7.330000e-21 113.0
64 TraesCS3B01G297200 chr4B 98.438 64 1 0 6299 6362 411631051 411631114 7.330000e-21 113.0
65 TraesCS3B01G297200 chr5D 94.744 761 34 4 8176 8931 344725819 344725060 0.000000e+00 1179.0
66 TraesCS3B01G297200 chr5D 90.832 469 33 8 2 462 70400809 70401275 3.540000e-173 619.0
67 TraesCS3B01G297200 chr5D 91.247 457 31 7 2 450 238121848 238121393 1.650000e-171 614.0
68 TraesCS3B01G297200 chr5D 88.865 467 41 7 5 462 430918439 430917975 1.680000e-156 564.0
69 TraesCS3B01G297200 chr5D 88.060 469 47 7 2 462 353645922 353645455 1.700000e-151 547.0
70 TraesCS3B01G297200 chr5D 87.983 466 45 7 6 462 8436740 8436277 2.840000e-149 540.0
71 TraesCS3B01G297200 chr5D 83.871 155 14 6 317 462 502589031 502588879 4.350000e-28 137.0
72 TraesCS3B01G297200 chr5D 100.000 64 0 0 6299 6362 268905743 268905680 1.580000e-22 119.0
73 TraesCS3B01G297200 chr5D 98.438 64 1 0 6299 6362 360541918 360541981 7.330000e-21 113.0
74 TraesCS3B01G297200 chr5D 96.875 64 2 0 6299 6362 58268952 58269015 3.410000e-19 108.0
75 TraesCS3B01G297200 chr5D 96.875 64 2 0 6299 6362 125808334 125808271 3.410000e-19 108.0
76 TraesCS3B01G297200 chr5D 96.875 64 2 0 6299 6362 200643712 200643649 3.410000e-19 108.0
77 TraesCS3B01G297200 chr5D 100.000 32 0 0 5930 5961 217656261 217656230 9.680000e-05 60.2
78 TraesCS3B01G297200 chr5D 100.000 32 0 0 5930 5961 530069323 530069292 9.680000e-05 60.2
79 TraesCS3B01G297200 chr5D 92.857 42 0 3 5920 5961 230024103 230024141 3.480000e-04 58.4
80 TraesCS3B01G297200 chr5D 90.476 42 3 1 5923 5964 549576616 549576576 5.000000e-03 54.7
81 TraesCS3B01G297200 chr7B 94.079 760 41 2 8176 8931 581720020 581719261 0.000000e+00 1151.0
82 TraesCS3B01G297200 chr7B 88.000 200 14 5 4939 5138 699828087 699827898 2.510000e-55 228.0
83 TraesCS3B01G297200 chr7B 92.208 77 6 0 4842 4918 367727471 367727547 9.480000e-20 110.0
84 TraesCS3B01G297200 chr7B 91.250 80 7 0 4841 4920 424436746 424436667 9.480000e-20 110.0
85 TraesCS3B01G297200 chr2D 94.087 761 39 4 8176 8931 23953377 23954136 0.000000e+00 1151.0
86 TraesCS3B01G297200 chr2D 91.684 469 31 3 2 462 634063387 634063855 2.100000e-180 643.0
87 TraesCS3B01G297200 chr2D 91.667 468 31 6 3 462 388078657 388079124 7.560000e-180 641.0
88 TraesCS3B01G297200 chr2D 87.686 471 46 9 2 462 562577314 562577782 1.020000e-148 538.0
89 TraesCS3B01G297200 chr2D 98.438 64 1 0 6299 6362 388833724 388833787 7.330000e-21 113.0
90 TraesCS3B01G297200 chr2D 100.000 34 0 0 5931 5964 67236198 67236165 7.490000e-06 63.9
91 TraesCS3B01G297200 chr2D 94.872 39 1 1 5931 5969 567483554 567483591 9.680000e-05 60.2
92 TraesCS3B01G297200 chr1B 93.947 760 41 3 8176 8931 120030136 120029378 0.000000e+00 1144.0
93 TraesCS3B01G297200 chr1B 93.947 760 41 3 8176 8931 479782492 479781734 0.000000e+00 1144.0
94 TraesCS3B01G297200 chr1B 89.552 469 40 3 2 462 420584794 420584327 3.590000e-163 586.0
95 TraesCS3B01G297200 chr1B 86.175 217 16 11 4948 5162 1526582 1526378 1.170000e-53 222.0
96 TraesCS3B01G297200 chr1B 98.438 64 1 0 6299 6362 237009254 237009191 7.330000e-21 113.0
97 TraesCS3B01G297200 chr1B 100.000 36 0 0 5933 5968 150361132 150361097 5.790000e-07 67.6
98 TraesCS3B01G297200 chr1D 91.045 469 34 6 2 462 43070915 43071383 2.120000e-175 627.0
99 TraesCS3B01G297200 chr1D 89.979 469 37 3 2 462 362592753 362593219 1.660000e-166 597.0
100 TraesCS3B01G297200 chr1D 89.149 470 42 7 2 462 439163728 439163259 2.160000e-160 577.0
101 TraesCS3B01G297200 chr1D 91.022 401 32 4 2 399 319523211 319523610 1.020000e-148 538.0
102 TraesCS3B01G297200 chr1D 87.686 471 47 8 2 462 447755911 447756380 1.020000e-148 538.0
103 TraesCS3B01G297200 chr1D 84.524 168 17 6 304 462 282278807 282278640 3.340000e-34 158.0
104 TraesCS3B01G297200 chr1D 96.875 64 2 0 6299 6362 33747668 33747731 3.410000e-19 108.0
105 TraesCS3B01G297200 chr1D 93.750 64 4 0 6299 6362 100462953 100463016 7.380000e-16 97.1
106 TraesCS3B01G297200 chr1D 93.750 64 4 0 6299 6362 286385402 286385465 7.380000e-16 97.1
107 TraesCS3B01G297200 chr1D 93.651 63 4 0 6300 6362 121405885 121405947 2.650000e-15 95.3
108 TraesCS3B01G297200 chr1D 92.188 64 5 0 399 462 346375341 346375278 3.430000e-14 91.6
109 TraesCS3B01G297200 chr1D 94.643 56 3 0 6307 6362 130306049 130305994 4.440000e-13 87.9
110 TraesCS3B01G297200 chr1D 90.476 63 6 0 6300 6362 128505381 128505319 5.750000e-12 84.2
111 TraesCS3B01G297200 chr1D 100.000 34 0 0 5935 5968 101291232 101291265 7.490000e-06 63.9
112 TraesCS3B01G297200 chr1D 100.000 34 0 0 5931 5964 253346498 253346531 7.490000e-06 63.9
113 TraesCS3B01G297200 chr1D 100.000 32 0 0 5931 5962 319565748 319565717 9.680000e-05 60.2
114 TraesCS3B01G297200 chr1D 100.000 31 0 0 5931 5961 133947979 133948009 3.480000e-04 58.4
115 TraesCS3B01G297200 chr1D 100.000 31 0 0 5931 5961 253525976 253525946 3.480000e-04 58.4
116 TraesCS3B01G297200 chr1D 100.000 31 0 0 5931 5961 372836016 372836046 3.480000e-04 58.4
117 TraesCS3B01G297200 chr1D 90.476 42 2 2 5930 5970 47710768 47710808 5.000000e-03 54.7
118 TraesCS3B01G297200 chr7D 91.045 469 33 7 2 462 116647877 116647410 7.610000e-175 625.0
119 TraesCS3B01G297200 chr7D 88.085 470 33 7 2 462 615954798 615955253 3.670000e-148 536.0
120 TraesCS3B01G297200 chr7D 92.500 80 6 0 4841 4920 81915510 81915431 2.040000e-21 115.0
121 TraesCS3B01G297200 chr7D 98.438 64 1 0 6299 6362 236827441 236827504 7.330000e-21 113.0
122 TraesCS3B01G297200 chr6D 90.832 469 32 3 2 462 469298431 469297966 1.270000e-172 617.0
123 TraesCS3B01G297200 chr6D 90.618 469 36 3 2 462 470941859 470941391 4.580000e-172 616.0
124 TraesCS3B01G297200 chr6D 89.083 458 39 9 2 450 378742513 378742968 7.830000e-155 558.0
125 TraesCS3B01G297200 chr6D 91.000 400 33 2 2 399 433730374 433730772 3.670000e-148 536.0
126 TraesCS3B01G297200 chr6D 90.932 397 33 2 5 399 456690231 456689836 1.710000e-146 531.0
127 TraesCS3B01G297200 chr6D 86.422 464 55 5 5 462 451799788 451799327 1.340000e-137 501.0
128 TraesCS3B01G297200 chr6D 94.194 310 18 0 2 311 24000835 24001144 2.920000e-129 473.0
129 TraesCS3B01G297200 chr6D 94.118 68 3 1 6299 6365 126868523 126868456 1.590000e-17 102.0
130 TraesCS3B01G297200 chr6D 95.312 64 3 0 6299 6362 249987153 249987090 1.590000e-17 102.0
131 TraesCS3B01G297200 chr6D 93.651 63 4 0 6300 6362 365846945 365847007 2.650000e-15 95.3
132 TraesCS3B01G297200 chr6D 92.063 63 5 0 6299 6361 210769586 210769648 1.240000e-13 89.8
133 TraesCS3B01G297200 chr6D 87.500 64 8 0 6299 6362 105578971 105578908 3.460000e-09 75.0
134 TraesCS3B01G297200 chr6D 90.909 55 5 0 6299 6353 372144846 372144900 3.460000e-09 75.0
135 TraesCS3B01G297200 chr6D 100.000 30 0 0 5932 5961 383757368 383757339 1.000000e-03 56.5
136 TraesCS3B01G297200 chr6D 96.875 32 1 0 5930 5961 54266636 54266667 5.000000e-03 54.7
137 TraesCS3B01G297200 chr6D 100.000 29 0 0 5933 5961 338806224 338806196 5.000000e-03 54.7
138 TraesCS3B01G297200 chr6D 100.000 29 0 0 5934 5962 338806230 338806258 5.000000e-03 54.7
139 TraesCS3B01G297200 chr6D 96.774 31 1 0 5930 5960 245267595 245267625 1.600000e-02 52.8
140 TraesCS3B01G297200 chr6D 96.774 31 1 0 5931 5961 383757429 383757459 1.600000e-02 52.8
141 TraesCS3B01G297200 chr6D 96.774 31 1 0 5931 5961 445417015 445417045 1.600000e-02 52.8
142 TraesCS3B01G297200 chr4D 90.638 470 34 8 2 462 479373043 479373511 4.580000e-172 616.0
143 TraesCS3B01G297200 chr4D 90.773 466 34 3 5 462 303072822 303072358 1.650000e-171 614.0
144 TraesCS3B01G297200 chr4D 89.765 469 39 7 2 462 65098666 65099133 7.720000e-165 592.0
145 TraesCS3B01G297200 chr4D 89.552 469 40 6 2 462 502779669 502779202 3.590000e-163 586.0
146 TraesCS3B01G297200 chr4D 98.438 64 0 1 6299 6362 294454518 294454456 2.640000e-20 111.0
147 TraesCS3B01G297200 chr4D 96.875 64 2 0 6299 6362 163760091 163760028 3.410000e-19 108.0
148 TraesCS3B01G297200 chr4D 96.875 64 2 0 6299 6362 346468124 346468061 3.410000e-19 108.0
149 TraesCS3B01G297200 chr4D 95.312 64 3 0 6299 6362 57485234 57485297 1.590000e-17 102.0
150 TraesCS3B01G297200 chr4D 95.312 64 3 0 6299 6362 409444416 409444479 1.590000e-17 102.0
151 TraesCS3B01G297200 chr4D 95.238 63 3 0 6299 6361 473136094 473136032 5.710000e-17 100.0
152 TraesCS3B01G297200 chr4D 83.333 90 7 6 463 550 507786543 507786460 9.620000e-10 76.8
153 TraesCS3B01G297200 chr4D 100.000 32 0 0 5931 5962 261053118 261053149 9.680000e-05 60.2
154 TraesCS3B01G297200 chrUn 87.665 454 44 6 5 448 42146045 42145594 1.330000e-142 518.0
155 TraesCS3B01G297200 chrUn 90.959 365 25 6 65 421 24710317 24710681 1.350000e-132 484.0
156 TraesCS3B01G297200 chrUn 84.713 471 60 9 2 462 60504691 60504223 2.270000e-125 460.0
157 TraesCS3B01G297200 chrUn 87.465 359 37 5 112 462 356993717 356994075 3.000000e-109 407.0
158 TraesCS3B01G297200 chrUn 91.139 79 7 0 4842 4920 277314078 277314156 3.410000e-19 108.0
159 TraesCS3B01G297200 chrUn 89.231 65 7 0 398 462 50797884 50797948 2.070000e-11 82.4
160 TraesCS3B01G297200 chrUn 97.222 36 0 1 5930 5965 70193228 70193194 9.680000e-05 60.2
161 TraesCS3B01G297200 chrUn 100.000 29 0 0 5931 5959 308089953 308089981 5.000000e-03 54.7
162 TraesCS3B01G297200 chr1A 89.119 193 13 4 4945 5137 554284368 554284184 5.390000e-57 233.0
163 TraesCS3B01G297200 chr1A 89.119 193 13 4 4945 5137 554289325 554289509 5.390000e-57 233.0
164 TraesCS3B01G297200 chr1A 100.000 34 0 0 5935 5968 104210552 104210519 7.490000e-06 63.9
165 TraesCS3B01G297200 chr4A 88.000 200 14 5 4939 5137 64574016 64574206 2.510000e-55 228.0
166 TraesCS3B01G297200 chr4A 92.500 40 2 1 5931 5969 88542445 88542484 1.000000e-03 56.5
167 TraesCS3B01G297200 chr6A 95.238 42 0 2 5931 5971 604890720 604890760 2.080000e-06 65.8
168 TraesCS3B01G297200 chr6A 97.143 35 0 1 5931 5965 426639354 426639387 3.480000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G297200 chr3B 476288451 476297381 8930 True 8005.500000 8085 100.000000 1 8931 2 chr3B.!!$R2 8930
1 TraesCS3B01G297200 chr3B 659593418 659594191 773 False 1402.000000 1402 99.354000 5147 5920 1 chr3B.!!$F1 773
2 TraesCS3B01G297200 chr3D 365787573 365793140 5567 True 2799.666667 4054 95.863000 2018 8176 3 chr3D.!!$R7 6158
3 TraesCS3B01G297200 chr3D 365798063 365799470 1407 True 912.000000 1694 95.166500 778 2017 2 chr3D.!!$R8 1239
4 TraesCS3B01G297200 chr3A 487457286 487464047 6761 True 1607.666667 3592 95.616333 778 8176 6 chr3A.!!$R2 7398
5 TraesCS3B01G297200 chr5A 174600822 174601595 773 True 1413.000000 1413 99.612000 5147 5920 1 chr5A.!!$R1 773
6 TraesCS3B01G297200 chr2A 518943443 518944216 773 True 1413.000000 1413 99.612000 5147 5920 1 chr2A.!!$R1 773
7 TraesCS3B01G297200 chr2A 676078870 676079646 776 True 1393.000000 1393 99.099000 5147 5920 1 chr2A.!!$R2 773
8 TraesCS3B01G297200 chr6B 606302492 606303265 773 True 1408.000000 1408 99.483000 5147 5920 1 chr6B.!!$R2 773
9 TraesCS3B01G297200 chr6B 481877008 481877767 759 True 1140.000000 1140 93.816000 8176 8931 1 chr6B.!!$R1 755
10 TraesCS3B01G297200 chr2B 46596964 46597735 771 False 1404.000000 1404 99.482000 5149 5920 1 chr2B.!!$F1 771
11 TraesCS3B01G297200 chr7A 495454746 495455515 769 True 1400.000000 1400 99.481000 5151 5920 1 chr7A.!!$R2 769
12 TraesCS3B01G297200 chr5B 48315504 48316278 774 True 1395.000000 1395 99.226000 5149 5920 1 chr5B.!!$R1 771
13 TraesCS3B01G297200 chr5B 262800369 262801128 759 True 1146.000000 1146 93.955000 8176 8931 1 chr5B.!!$R2 755
14 TraesCS3B01G297200 chr5B 289550122 289550881 759 True 1140.000000 1140 93.816000 8176 8931 1 chr5B.!!$R4 755
15 TraesCS3B01G297200 chr4B 322670120 322670907 787 False 1391.000000 1391 98.606000 5136 5920 1 chr4B.!!$F3 784
16 TraesCS3B01G297200 chr4B 99453481 99454240 759 False 1146.000000 1146 93.947000 8176 8931 1 chr4B.!!$F2 755
17 TraesCS3B01G297200 chr5D 344725060 344725819 759 True 1179.000000 1179 94.744000 8176 8931 1 chr5D.!!$R7 755
18 TraesCS3B01G297200 chr7B 581719261 581720020 759 True 1151.000000 1151 94.079000 8176 8931 1 chr7B.!!$R2 755
19 TraesCS3B01G297200 chr2D 23953377 23954136 759 False 1151.000000 1151 94.087000 8176 8931 1 chr2D.!!$F1 755
20 TraesCS3B01G297200 chr1B 120029378 120030136 758 True 1144.000000 1144 93.947000 8176 8931 1 chr1B.!!$R2 755
21 TraesCS3B01G297200 chr1B 479781734 479782492 758 True 1144.000000 1144 93.947000 8176 8931 1 chr1B.!!$R6 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.026803 GAAGATGCGCCGCTTACTTG 59.973 55.000 11.67 0.0 0.00 3.16 F
1656 1841 0.033109 CCTCCATGGTTCCCCTTTCC 60.033 60.000 12.58 0.0 0.00 3.13 F
1663 1848 0.609406 GGTTCCCCTTTCCTCTGTGC 60.609 60.000 0.00 0.0 0.00 4.57 F
1664 1849 0.609406 GTTCCCCTTTCCTCTGTGCC 60.609 60.000 0.00 0.0 0.00 5.01 F
1667 1852 1.301293 CCCTTTCCTCTGTGCCCTC 59.699 63.158 0.00 0.0 0.00 4.30 F
1668 1853 1.301293 CCTTTCCTCTGTGCCCTCC 59.699 63.158 0.00 0.0 0.00 4.30 F
3055 3455 1.333177 AGACGGTCTGCTCTTTCTGT 58.667 50.000 10.41 0.0 0.00 3.41 F
3466 3866 4.634199 AGATGCCAAAAACAACAGGATTG 58.366 39.130 0.00 0.0 0.00 2.67 F
4182 4582 5.453567 AAGGTACAATTCCACTTTGCTTC 57.546 39.130 0.00 0.0 0.00 3.86 F
5352 5983 1.210478 CGGACTCCTCCCATGTCAAAT 59.790 52.381 0.00 0.0 31.93 2.32 F
6441 7082 2.480853 CGACCGGTCGTGATGGAACA 62.481 60.000 41.62 0.0 46.99 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1823 2033 0.796312 CTTCTAAATGGCGCACGTGT 59.204 50.000 18.38 0.00 0.00 4.49 R
2770 3170 0.107703 ATCATGTGCTACACCCCACG 60.108 55.000 0.00 0.00 34.77 4.94 R
3411 3811 4.578928 TCCTAACTTCTGTTCCAACAAAGC 59.421 41.667 11.25 0.00 38.66 3.51 R
3466 3866 6.183361 TGGCTCATAAAATACTACTTCCTCCC 60.183 42.308 0.00 0.00 0.00 4.30 R
3504 3904 6.916387 GCATCAACTGATTTCATCTGGTATTG 59.084 38.462 0.00 0.00 31.21 1.90 R
3785 4185 4.576463 GTGAGATGTGATTTGGATGGTACC 59.424 45.833 4.43 4.43 0.00 3.34 R
3995 4395 0.254178 GTCATCCAGGTGCACCAGAT 59.746 55.000 36.39 31.19 38.89 2.90 R
5065 5692 0.460284 ATGATGTCACGGGTTCGAGC 60.460 55.000 0.00 0.00 40.11 5.03 R
6178 6817 0.249489 AGAGTTGCCGAGTGTGTCAC 60.249 55.000 0.00 0.00 34.10 3.67 R
6990 7631 1.619654 TCAGCCACTTGTCATTTGGG 58.380 50.000 3.10 0.00 0.00 4.12 R
8152 8814 0.396695 TCCCTAGATCCCACGGTCAC 60.397 60.000 0.00 0.00 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.078516 GGGGGACGGTCGTGGAAG 62.079 72.222 0.00 0.00 0.00 3.46
31 32 2.993264 GGGGACGGTCGTGGAAGA 60.993 66.667 0.00 0.00 0.00 2.87
32 33 2.356780 GGGGACGGTCGTGGAAGAT 61.357 63.158 0.00 0.00 0.00 2.40
33 34 1.141234 GGGACGGTCGTGGAAGATC 59.859 63.158 0.00 0.00 0.00 2.75
34 35 1.601419 GGGACGGTCGTGGAAGATCA 61.601 60.000 0.00 0.00 0.00 2.92
35 36 0.245539 GGACGGTCGTGGAAGATCAA 59.754 55.000 0.00 0.00 0.00 2.57
36 37 1.347320 GACGGTCGTGGAAGATCAAC 58.653 55.000 0.00 0.00 0.00 3.18
37 38 0.388134 ACGGTCGTGGAAGATCAACG 60.388 55.000 0.87 0.87 0.00 4.10
38 39 1.683790 CGGTCGTGGAAGATCAACGC 61.684 60.000 2.44 0.00 0.00 4.84
39 40 1.359459 GGTCGTGGAAGATCAACGCC 61.359 60.000 2.44 4.18 0.00 5.68
40 41 1.445410 TCGTGGAAGATCAACGCCG 60.445 57.895 2.44 0.00 0.00 6.46
41 42 2.452813 CGTGGAAGATCAACGCCGG 61.453 63.158 0.00 0.00 0.00 6.13
42 43 1.375523 GTGGAAGATCAACGCCGGT 60.376 57.895 1.90 0.00 0.00 5.28
43 44 1.079405 TGGAAGATCAACGCCGGTC 60.079 57.895 1.90 0.00 0.00 4.79
44 45 2.165301 GGAAGATCAACGCCGGTCG 61.165 63.158 15.25 15.25 45.38 4.79
45 46 2.125673 AAGATCAACGCCGGTCGG 60.126 61.111 19.73 4.85 43.86 4.79
46 47 2.830704 GAAGATCAACGCCGGTCGGT 62.831 60.000 19.73 12.44 43.86 4.69
54 55 3.692406 GCCGGTCGGTGAAGGAGT 61.692 66.667 11.25 0.00 37.65 3.85
55 56 2.261671 CCGGTCGGTGAAGGAGTG 59.738 66.667 0.55 0.00 0.00 3.51
56 57 2.432628 CGGTCGGTGAAGGAGTGC 60.433 66.667 0.00 0.00 0.00 4.40
57 58 2.047179 GGTCGGTGAAGGAGTGCC 60.047 66.667 0.00 0.00 0.00 5.01
58 59 2.432628 GTCGGTGAAGGAGTGCCG 60.433 66.667 0.00 0.00 44.95 5.69
60 61 2.432628 CGGTGAAGGAGTGCCGAC 60.433 66.667 0.00 0.00 46.33 4.79
61 62 2.432628 GGTGAAGGAGTGCCGACG 60.433 66.667 0.00 0.00 39.96 5.12
62 63 3.112709 GTGAAGGAGTGCCGACGC 61.113 66.667 0.00 0.00 39.96 5.19
63 64 4.373116 TGAAGGAGTGCCGACGCC 62.373 66.667 0.00 0.00 42.21 5.68
83 84 4.467084 GGACTGCCGGCCGATGAA 62.467 66.667 30.73 3.77 0.00 2.57
84 85 2.892425 GACTGCCGGCCGATGAAG 60.892 66.667 30.73 17.89 0.00 3.02
85 86 3.371097 GACTGCCGGCCGATGAAGA 62.371 63.158 30.73 0.19 0.00 2.87
86 87 2.109799 CTGCCGGCCGATGAAGAT 59.890 61.111 30.73 0.00 0.00 2.40
87 88 2.203056 TGCCGGCCGATGAAGATG 60.203 61.111 30.73 8.26 0.00 2.90
88 89 3.654020 GCCGGCCGATGAAGATGC 61.654 66.667 30.73 15.52 0.00 3.91
89 90 3.341043 CCGGCCGATGAAGATGCG 61.341 66.667 30.73 0.44 0.00 4.73
90 91 4.005472 CGGCCGATGAAGATGCGC 62.005 66.667 24.07 0.00 0.00 6.09
91 92 3.654020 GGCCGATGAAGATGCGCC 61.654 66.667 4.18 0.00 0.00 6.53
92 93 4.005472 GCCGATGAAGATGCGCCG 62.005 66.667 4.18 0.00 0.00 6.46
93 94 4.005472 CCGATGAAGATGCGCCGC 62.005 66.667 4.18 0.00 0.00 6.53
94 95 2.963854 CGATGAAGATGCGCCGCT 60.964 61.111 11.67 0.00 0.00 5.52
95 96 2.528743 CGATGAAGATGCGCCGCTT 61.529 57.895 11.67 8.44 0.00 4.68
96 97 1.215014 CGATGAAGATGCGCCGCTTA 61.215 55.000 11.67 0.00 0.00 3.09
97 98 0.233332 GATGAAGATGCGCCGCTTAC 59.767 55.000 11.67 1.35 0.00 2.34
98 99 0.179073 ATGAAGATGCGCCGCTTACT 60.179 50.000 11.67 3.95 0.00 2.24
99 100 0.391130 TGAAGATGCGCCGCTTACTT 60.391 50.000 11.67 12.74 0.00 2.24
100 101 0.026803 GAAGATGCGCCGCTTACTTG 59.973 55.000 11.67 0.00 0.00 3.16
101 102 1.982073 AAGATGCGCCGCTTACTTGC 61.982 55.000 11.67 0.00 0.00 4.01
102 103 2.436646 ATGCGCCGCTTACTTGCT 60.437 55.556 11.67 0.00 0.00 3.91
103 104 2.366787 GATGCGCCGCTTACTTGCTC 62.367 60.000 11.67 0.00 0.00 4.26
104 105 4.210304 GCGCCGCTTACTTGCTCG 62.210 66.667 0.00 0.00 0.00 5.03
105 106 2.809601 CGCCGCTTACTTGCTCGT 60.810 61.111 0.00 0.00 0.00 4.18
106 107 2.789203 CGCCGCTTACTTGCTCGTC 61.789 63.158 0.00 0.00 0.00 4.20
107 108 2.789203 GCCGCTTACTTGCTCGTCG 61.789 63.158 0.00 0.00 0.00 5.12
108 109 2.158959 CCGCTTACTTGCTCGTCGG 61.159 63.158 0.00 0.00 0.00 4.79
109 110 1.443872 CGCTTACTTGCTCGTCGGT 60.444 57.895 0.00 0.00 0.00 4.69
110 111 1.674611 CGCTTACTTGCTCGTCGGTG 61.675 60.000 0.00 0.00 0.00 4.94
111 112 1.956620 GCTTACTTGCTCGTCGGTGC 61.957 60.000 0.00 0.00 0.00 5.01
112 113 1.352156 CTTACTTGCTCGTCGGTGCC 61.352 60.000 8.26 0.00 31.76 5.01
113 114 3.620300 TACTTGCTCGTCGGTGCCG 62.620 63.158 3.94 3.94 41.35 5.69
114 115 4.717629 CTTGCTCGTCGGTGCCGA 62.718 66.667 9.48 9.48 46.87 5.54
137 138 4.430765 GTCGGCCGGAAAGCTCGA 62.431 66.667 27.83 0.00 34.54 4.04
138 139 3.687102 TCGGCCGGAAAGCTCGAA 61.687 61.111 27.83 0.00 34.18 3.71
139 140 3.488090 CGGCCGGAAAGCTCGAAC 61.488 66.667 20.10 0.00 0.00 3.95
140 141 3.488090 GGCCGGAAAGCTCGAACG 61.488 66.667 5.05 0.00 0.00 3.95
141 142 3.488090 GCCGGAAAGCTCGAACGG 61.488 66.667 5.05 12.89 46.78 4.44
143 144 3.768632 CGGAAAGCTCGAACGGAG 58.231 61.111 0.00 0.00 46.06 4.63
144 145 1.805945 CGGAAAGCTCGAACGGAGG 60.806 63.158 0.00 0.00 43.36 4.30
145 146 1.590147 GGAAAGCTCGAACGGAGGA 59.410 57.895 0.00 0.00 43.36 3.71
146 147 0.037605 GGAAAGCTCGAACGGAGGAA 60.038 55.000 0.00 0.00 43.36 3.36
147 148 1.351153 GAAAGCTCGAACGGAGGAAG 58.649 55.000 0.00 0.00 43.36 3.46
148 149 0.966920 AAAGCTCGAACGGAGGAAGA 59.033 50.000 0.00 0.00 43.36 2.87
149 150 0.966920 AAGCTCGAACGGAGGAAGAA 59.033 50.000 0.00 0.00 43.36 2.52
150 151 1.187087 AGCTCGAACGGAGGAAGAAT 58.813 50.000 0.00 0.00 43.36 2.40
151 152 1.134965 AGCTCGAACGGAGGAAGAATG 60.135 52.381 0.00 0.00 43.36 2.67
152 153 1.135083 GCTCGAACGGAGGAAGAATGA 60.135 52.381 0.00 0.00 43.36 2.57
153 154 2.482142 GCTCGAACGGAGGAAGAATGAT 60.482 50.000 0.00 0.00 43.36 2.45
154 155 3.119291 CTCGAACGGAGGAAGAATGATG 58.881 50.000 0.00 0.00 39.22 3.07
155 156 2.159099 TCGAACGGAGGAAGAATGATGG 60.159 50.000 0.00 0.00 0.00 3.51
156 157 1.943340 GAACGGAGGAAGAATGATGGC 59.057 52.381 0.00 0.00 0.00 4.40
157 158 0.179073 ACGGAGGAAGAATGATGGCG 60.179 55.000 0.00 0.00 0.00 5.69
158 159 0.882042 CGGAGGAAGAATGATGGCGG 60.882 60.000 0.00 0.00 0.00 6.13
159 160 0.536006 GGAGGAAGAATGATGGCGGG 60.536 60.000 0.00 0.00 0.00 6.13
160 161 0.469917 GAGGAAGAATGATGGCGGGA 59.530 55.000 0.00 0.00 0.00 5.14
161 162 0.471617 AGGAAGAATGATGGCGGGAG 59.528 55.000 0.00 0.00 0.00 4.30
162 163 0.181350 GGAAGAATGATGGCGGGAGT 59.819 55.000 0.00 0.00 0.00 3.85
163 164 1.408822 GGAAGAATGATGGCGGGAGTT 60.409 52.381 0.00 0.00 0.00 3.01
164 165 1.672881 GAAGAATGATGGCGGGAGTTG 59.327 52.381 0.00 0.00 0.00 3.16
165 166 0.107017 AGAATGATGGCGGGAGTTGG 60.107 55.000 0.00 0.00 0.00 3.77
166 167 1.076777 AATGATGGCGGGAGTTGGG 60.077 57.895 0.00 0.00 0.00 4.12
167 168 2.572333 AATGATGGCGGGAGTTGGGG 62.572 60.000 0.00 0.00 0.00 4.96
174 175 4.410400 GGGAGTTGGGGCGGTGAG 62.410 72.222 0.00 0.00 0.00 3.51
175 176 4.410400 GGAGTTGGGGCGGTGAGG 62.410 72.222 0.00 0.00 0.00 3.86
176 177 4.410400 GAGTTGGGGCGGTGAGGG 62.410 72.222 0.00 0.00 0.00 4.30
177 178 4.974438 AGTTGGGGCGGTGAGGGA 62.974 66.667 0.00 0.00 0.00 4.20
178 179 4.410400 GTTGGGGCGGTGAGGGAG 62.410 72.222 0.00 0.00 0.00 4.30
185 186 2.365105 CGGTGAGGGAGGGGCTAA 60.365 66.667 0.00 0.00 0.00 3.09
186 187 1.993391 CGGTGAGGGAGGGGCTAAA 60.993 63.158 0.00 0.00 0.00 1.85
187 188 1.345715 CGGTGAGGGAGGGGCTAAAT 61.346 60.000 0.00 0.00 0.00 1.40
188 189 1.815757 GGTGAGGGAGGGGCTAAATA 58.184 55.000 0.00 0.00 0.00 1.40
189 190 1.700186 GGTGAGGGAGGGGCTAAATAG 59.300 57.143 0.00 0.00 0.00 1.73
190 191 1.700186 GTGAGGGAGGGGCTAAATAGG 59.300 57.143 0.00 0.00 0.00 2.57
191 192 1.363246 GAGGGAGGGGCTAAATAGGG 58.637 60.000 0.00 0.00 0.00 3.53
192 193 0.103876 AGGGAGGGGCTAAATAGGGG 60.104 60.000 0.00 0.00 0.00 4.79
193 194 0.403008 GGGAGGGGCTAAATAGGGGT 60.403 60.000 0.00 0.00 0.00 4.95
194 195 0.771755 GGAGGGGCTAAATAGGGGTG 59.228 60.000 0.00 0.00 0.00 4.61
195 196 0.771755 GAGGGGCTAAATAGGGGTGG 59.228 60.000 0.00 0.00 0.00 4.61
196 197 0.349091 AGGGGCTAAATAGGGGTGGA 59.651 55.000 0.00 0.00 0.00 4.02
197 198 0.477204 GGGGCTAAATAGGGGTGGAC 59.523 60.000 0.00 0.00 0.00 4.02
198 199 1.519498 GGGCTAAATAGGGGTGGACT 58.481 55.000 0.00 0.00 0.00 3.85
199 200 1.420514 GGGCTAAATAGGGGTGGACTC 59.579 57.143 0.00 0.00 0.00 3.36
200 201 1.070289 GGCTAAATAGGGGTGGACTCG 59.930 57.143 0.00 0.00 0.00 4.18
201 202 1.070289 GCTAAATAGGGGTGGACTCGG 59.930 57.143 0.00 0.00 0.00 4.63
202 203 1.070289 CTAAATAGGGGTGGACTCGGC 59.930 57.143 0.00 0.00 0.00 5.54
203 204 1.968050 AAATAGGGGTGGACTCGGCG 61.968 60.000 0.00 0.00 0.00 6.46
214 215 3.827898 CTCGGCGGGAGGTGAGTC 61.828 72.222 0.00 0.00 39.22 3.36
217 218 3.379445 GGCGGGAGGTGAGTCGAA 61.379 66.667 0.00 0.00 0.00 3.71
218 219 2.654877 GCGGGAGGTGAGTCGAAA 59.345 61.111 0.00 0.00 0.00 3.46
219 220 1.218316 GCGGGAGGTGAGTCGAAAT 59.782 57.895 0.00 0.00 0.00 2.17
220 221 0.806492 GCGGGAGGTGAGTCGAAATC 60.806 60.000 0.00 0.00 0.00 2.17
221 222 0.179108 CGGGAGGTGAGTCGAAATCC 60.179 60.000 0.00 0.00 0.00 3.01
222 223 1.196012 GGGAGGTGAGTCGAAATCCT 58.804 55.000 0.00 0.00 0.00 3.24
223 224 1.137282 GGGAGGTGAGTCGAAATCCTC 59.863 57.143 14.69 14.69 42.53 3.71
224 225 2.588027 GAGGTGAGTCGAAATCCTCC 57.412 55.000 13.00 8.25 38.81 4.30
225 226 1.137282 GAGGTGAGTCGAAATCCTCCC 59.863 57.143 13.00 7.61 38.81 4.30
226 227 0.179108 GGTGAGTCGAAATCCTCCCG 60.179 60.000 0.00 0.00 0.00 5.14
227 228 0.531200 GTGAGTCGAAATCCTCCCGT 59.469 55.000 0.00 0.00 0.00 5.28
228 229 0.815734 TGAGTCGAAATCCTCCCGTC 59.184 55.000 0.00 0.00 0.00 4.79
229 230 0.248539 GAGTCGAAATCCTCCCGTCG 60.249 60.000 0.00 0.00 34.85 5.12
230 231 0.679002 AGTCGAAATCCTCCCGTCGA 60.679 55.000 0.00 0.00 40.00 4.20
231 232 0.384669 GTCGAAATCCTCCCGTCGAT 59.615 55.000 0.00 0.00 43.65 3.59
232 233 1.108776 TCGAAATCCTCCCGTCGATT 58.891 50.000 0.00 0.00 37.58 3.34
233 234 1.479323 TCGAAATCCTCCCGTCGATTT 59.521 47.619 0.00 0.00 40.52 2.17
234 235 2.093869 TCGAAATCCTCCCGTCGATTTT 60.094 45.455 0.00 0.00 38.50 1.82
235 236 2.676342 CGAAATCCTCCCGTCGATTTTT 59.324 45.455 0.00 0.00 38.50 1.94
265 266 2.279120 CGAGCTCACGCCATCTCC 60.279 66.667 15.40 0.00 36.60 3.71
266 267 2.107953 GAGCTCACGCCATCTCCC 59.892 66.667 9.40 0.00 36.60 4.30
267 268 3.453070 GAGCTCACGCCATCTCCCC 62.453 68.421 9.40 0.00 36.60 4.81
268 269 3.474570 GCTCACGCCATCTCCCCT 61.475 66.667 0.00 0.00 0.00 4.79
269 270 2.503061 CTCACGCCATCTCCCCTG 59.497 66.667 0.00 0.00 0.00 4.45
270 271 3.746949 CTCACGCCATCTCCCCTGC 62.747 68.421 0.00 0.00 0.00 4.85
271 272 3.790437 CACGCCATCTCCCCTGCT 61.790 66.667 0.00 0.00 0.00 4.24
272 273 3.474570 ACGCCATCTCCCCTGCTC 61.475 66.667 0.00 0.00 0.00 4.26
273 274 4.598894 CGCCATCTCCCCTGCTCG 62.599 72.222 0.00 0.00 0.00 5.03
274 275 4.925861 GCCATCTCCCCTGCTCGC 62.926 72.222 0.00 0.00 0.00 5.03
275 276 3.473647 CCATCTCCCCTGCTCGCA 61.474 66.667 0.00 0.00 0.00 5.10
276 277 2.202987 CATCTCCCCTGCTCGCAC 60.203 66.667 0.00 0.00 0.00 5.34
277 278 3.842923 ATCTCCCCTGCTCGCACG 61.843 66.667 0.00 0.00 0.00 5.34
279 280 4.504916 CTCCCCTGCTCGCACGAG 62.505 72.222 15.50 15.50 44.56 4.18
288 289 3.760035 TCGCACGAGGGGAGAAGC 61.760 66.667 0.00 0.00 33.99 3.86
293 294 4.856607 CGAGGGGAGAAGCGCGTC 62.857 72.222 15.94 15.94 39.93 5.19
294 295 4.856607 GAGGGGAGAAGCGCGTCG 62.857 72.222 17.57 0.00 35.19 5.12
338 339 3.877357 CTCGCGAGCTACTGCCGA 61.877 66.667 25.07 0.00 40.80 5.54
339 340 3.187699 CTCGCGAGCTACTGCCGAT 62.188 63.158 25.07 0.00 40.80 4.18
340 341 2.278857 CGCGAGCTACTGCCGATT 60.279 61.111 0.00 0.00 40.80 3.34
341 342 2.296480 CGCGAGCTACTGCCGATTC 61.296 63.158 0.00 0.00 40.80 2.52
342 343 1.226974 GCGAGCTACTGCCGATTCA 60.227 57.895 0.00 0.00 40.80 2.57
343 344 1.211818 GCGAGCTACTGCCGATTCAG 61.212 60.000 0.00 0.00 40.80 3.02
344 345 0.596083 CGAGCTACTGCCGATTCAGG 60.596 60.000 0.00 0.00 40.80 3.86
353 354 3.975992 CCGATTCAGGCGTTTCTTG 57.024 52.632 0.00 0.00 0.00 3.02
354 355 0.447801 CCGATTCAGGCGTTTCTTGG 59.552 55.000 0.00 0.00 0.00 3.61
355 356 0.447801 CGATTCAGGCGTTTCTTGGG 59.552 55.000 0.00 0.00 0.00 4.12
356 357 0.171231 GATTCAGGCGTTTCTTGGGC 59.829 55.000 0.00 0.00 0.00 5.36
360 361 3.373565 GGCGTTTCTTGGGCCTGG 61.374 66.667 4.53 0.00 43.52 4.45
361 362 2.597510 GCGTTTCTTGGGCCTGGT 60.598 61.111 4.53 0.00 0.00 4.00
362 363 2.626780 GCGTTTCTTGGGCCTGGTC 61.627 63.158 4.53 0.00 0.00 4.02
363 364 1.073199 CGTTTCTTGGGCCTGGTCT 59.927 57.895 4.53 0.00 0.00 3.85
364 365 1.237285 CGTTTCTTGGGCCTGGTCTG 61.237 60.000 4.53 0.00 0.00 3.51
365 366 0.110486 GTTTCTTGGGCCTGGTCTGA 59.890 55.000 4.53 0.00 0.00 3.27
366 367 0.850100 TTTCTTGGGCCTGGTCTGAA 59.150 50.000 4.53 0.00 0.00 3.02
367 368 0.110486 TTCTTGGGCCTGGTCTGAAC 59.890 55.000 4.53 0.00 0.00 3.18
368 369 1.672356 CTTGGGCCTGGTCTGAACG 60.672 63.158 4.53 0.00 0.00 3.95
369 370 2.397413 CTTGGGCCTGGTCTGAACGT 62.397 60.000 4.53 0.00 0.00 3.99
370 371 2.358737 GGGCCTGGTCTGAACGTG 60.359 66.667 0.84 0.00 0.00 4.49
371 372 3.050275 GGCCTGGTCTGAACGTGC 61.050 66.667 0.00 0.00 0.00 5.34
372 373 2.031163 GCCTGGTCTGAACGTGCT 59.969 61.111 0.00 0.00 0.00 4.40
373 374 1.598130 GCCTGGTCTGAACGTGCTT 60.598 57.895 0.00 0.00 0.00 3.91
374 375 1.166531 GCCTGGTCTGAACGTGCTTT 61.167 55.000 0.00 0.00 0.00 3.51
375 376 1.876416 GCCTGGTCTGAACGTGCTTTA 60.876 52.381 0.00 0.00 0.00 1.85
376 377 2.489971 CCTGGTCTGAACGTGCTTTAA 58.510 47.619 0.00 0.00 0.00 1.52
377 378 2.480419 CCTGGTCTGAACGTGCTTTAAG 59.520 50.000 0.00 0.00 0.00 1.85
378 379 3.131396 CTGGTCTGAACGTGCTTTAAGT 58.869 45.455 0.00 0.00 0.00 2.24
379 380 3.537580 TGGTCTGAACGTGCTTTAAGTT 58.462 40.909 0.00 0.00 33.56 2.66
380 381 3.558418 TGGTCTGAACGTGCTTTAAGTTC 59.442 43.478 0.00 1.11 44.70 3.01
381 382 3.059120 GGTCTGAACGTGCTTTAAGTTCC 60.059 47.826 0.00 0.00 44.11 3.62
382 383 2.798283 TCTGAACGTGCTTTAAGTTCCG 59.202 45.455 0.00 0.00 44.11 4.30
383 384 2.542595 CTGAACGTGCTTTAAGTTCCGT 59.457 45.455 0.00 0.00 44.11 4.69
384 385 2.285756 TGAACGTGCTTTAAGTTCCGTG 59.714 45.455 0.00 0.00 44.11 4.94
385 386 0.584876 ACGTGCTTTAAGTTCCGTGC 59.415 50.000 0.00 0.00 0.00 5.34
386 387 0.450482 CGTGCTTTAAGTTCCGTGCG 60.450 55.000 0.00 0.00 0.00 5.34
387 388 0.863144 GTGCTTTAAGTTCCGTGCGA 59.137 50.000 0.00 0.00 0.00 5.10
388 389 0.863144 TGCTTTAAGTTCCGTGCGAC 59.137 50.000 0.00 0.00 0.00 5.19
389 390 0.179258 GCTTTAAGTTCCGTGCGACG 60.179 55.000 0.00 0.00 42.11 5.12
390 391 0.179258 CTTTAAGTTCCGTGCGACGC 60.179 55.000 14.19 14.19 40.91 5.19
391 392 1.878524 TTTAAGTTCCGTGCGACGCG 61.879 55.000 16.14 3.53 40.91 6.01
408 409 2.970324 GGACCGCAACGCAGACAA 60.970 61.111 0.00 0.00 0.00 3.18
409 410 2.248431 GACCGCAACGCAGACAAC 59.752 61.111 0.00 0.00 0.00 3.32
410 411 3.236618 GACCGCAACGCAGACAACC 62.237 63.158 0.00 0.00 0.00 3.77
411 412 3.276091 CCGCAACGCAGACAACCA 61.276 61.111 0.00 0.00 0.00 3.67
412 413 2.712539 CGCAACGCAGACAACCAA 59.287 55.556 0.00 0.00 0.00 3.67
413 414 1.063327 CGCAACGCAGACAACCAAA 59.937 52.632 0.00 0.00 0.00 3.28
414 415 1.199852 CGCAACGCAGACAACCAAAC 61.200 55.000 0.00 0.00 0.00 2.93
415 416 1.199852 GCAACGCAGACAACCAAACG 61.200 55.000 0.00 0.00 0.00 3.60
416 417 0.591236 CAACGCAGACAACCAAACGG 60.591 55.000 0.00 0.00 0.00 4.44
417 418 1.720694 AACGCAGACAACCAAACGGG 61.721 55.000 0.00 0.00 44.81 5.28
418 419 2.335011 GCAGACAACCAAACGGGC 59.665 61.111 0.00 0.00 42.05 6.13
419 420 3.039134 CAGACAACCAAACGGGCC 58.961 61.111 0.00 0.00 42.05 5.80
420 421 1.826054 CAGACAACCAAACGGGCCA 60.826 57.895 4.39 0.00 42.05 5.36
421 422 1.826487 AGACAACCAAACGGGCCAC 60.826 57.895 4.39 0.00 42.05 5.01
422 423 1.826487 GACAACCAAACGGGCCACT 60.826 57.895 4.39 0.00 42.05 4.00
423 424 1.380650 ACAACCAAACGGGCCACTT 60.381 52.632 4.39 0.00 42.05 3.16
424 425 0.973496 ACAACCAAACGGGCCACTTT 60.973 50.000 4.39 0.00 42.05 2.66
425 426 0.249280 CAACCAAACGGGCCACTTTC 60.249 55.000 4.39 0.00 42.05 2.62
426 427 0.396556 AACCAAACGGGCCACTTTCT 60.397 50.000 4.39 0.00 42.05 2.52
427 428 0.396556 ACCAAACGGGCCACTTTCTT 60.397 50.000 4.39 0.00 42.05 2.52
428 429 0.313987 CCAAACGGGCCACTTTCTTC 59.686 55.000 4.39 0.00 0.00 2.87
429 430 0.313987 CAAACGGGCCACTTTCTTCC 59.686 55.000 4.39 0.00 0.00 3.46
430 431 0.826256 AAACGGGCCACTTTCTTCCC 60.826 55.000 4.39 0.00 35.42 3.97
432 433 3.062466 GGGCCACTTTCTTCCCGC 61.062 66.667 4.39 0.00 0.00 6.13
433 434 3.431725 GGCCACTTTCTTCCCGCG 61.432 66.667 0.00 0.00 0.00 6.46
434 435 4.103103 GCCACTTTCTTCCCGCGC 62.103 66.667 0.00 0.00 0.00 6.86
435 436 3.788766 CCACTTTCTTCCCGCGCG 61.789 66.667 25.67 25.67 0.00 6.86
436 437 3.788766 CACTTTCTTCCCGCGCGG 61.789 66.667 41.00 41.00 0.00 6.46
455 456 2.912690 GACCAGACTGGGCCTAATAC 57.087 55.000 25.34 3.08 40.64 1.89
456 457 1.068741 GACCAGACTGGGCCTAATACG 59.931 57.143 25.34 0.00 40.64 3.06
457 458 0.393077 CCAGACTGGGCCTAATACGG 59.607 60.000 14.26 0.00 32.67 4.02
458 459 0.393077 CAGACTGGGCCTAATACGGG 59.607 60.000 4.53 0.00 0.00 5.28
470 471 4.766375 CCTAATACGGGCAATATACCTGG 58.234 47.826 8.10 0.00 37.93 4.45
471 472 2.781681 ATACGGGCAATATACCTGGC 57.218 50.000 8.10 0.42 37.93 4.85
477 478 2.723273 GGCAATATACCTGGCCATACC 58.277 52.381 5.51 0.00 45.70 2.73
478 479 2.308866 GGCAATATACCTGGCCATACCT 59.691 50.000 5.51 0.00 45.70 3.08
479 480 3.610911 GCAATATACCTGGCCATACCTC 58.389 50.000 5.51 0.00 40.22 3.85
480 481 3.861840 CAATATACCTGGCCATACCTCG 58.138 50.000 5.51 0.00 40.22 4.63
481 482 1.933021 TATACCTGGCCATACCTCGG 58.067 55.000 5.51 5.16 40.22 4.63
482 483 0.105142 ATACCTGGCCATACCTCGGT 60.105 55.000 15.70 15.70 42.96 4.69
483 484 0.757935 TACCTGGCCATACCTCGGTC 60.758 60.000 14.93 0.00 41.40 4.79
484 485 2.808206 CCTGGCCATACCTCGGTCC 61.808 68.421 5.51 0.00 40.22 4.46
485 486 2.039787 TGGCCATACCTCGGTCCA 59.960 61.111 0.00 0.00 40.22 4.02
486 487 2.032860 CTGGCCATACCTCGGTCCAG 62.033 65.000 5.51 7.04 39.67 3.86
487 488 2.808206 GGCCATACCTCGGTCCAGG 61.808 68.421 0.00 5.97 39.80 4.45
488 489 2.822399 CCATACCTCGGTCCAGGC 59.178 66.667 7.15 0.00 36.98 4.85
489 490 2.808206 CCATACCTCGGTCCAGGCC 61.808 68.421 0.00 0.00 36.98 5.19
508 509 2.595655 GGCCTAACCAAGCCCGAT 59.404 61.111 0.00 0.00 43.76 4.18
509 510 1.823899 GGCCTAACCAAGCCCGATG 60.824 63.158 0.00 0.00 43.76 3.84
510 511 2.481471 GCCTAACCAAGCCCGATGC 61.481 63.158 0.00 0.00 41.71 3.91
511 512 1.077787 CCTAACCAAGCCCGATGCA 60.078 57.895 0.00 0.00 44.83 3.96
512 513 0.679640 CCTAACCAAGCCCGATGCAA 60.680 55.000 0.00 0.00 44.83 4.08
513 514 1.173043 CTAACCAAGCCCGATGCAAA 58.827 50.000 0.00 0.00 44.83 3.68
514 515 1.543802 CTAACCAAGCCCGATGCAAAA 59.456 47.619 0.00 0.00 44.83 2.44
515 516 0.755686 AACCAAGCCCGATGCAAAAA 59.244 45.000 0.00 0.00 44.83 1.94
529 530 4.198087 AAAAACTCAGGCCTGGGC 57.802 55.556 33.33 13.15 41.06 5.36
545 546 2.439156 GCCTAGCCCTGCCAACAG 60.439 66.667 0.00 0.00 44.05 3.16
560 561 3.027419 ACAGGCCTGTTTTCTGAGC 57.973 52.632 33.20 0.00 41.83 4.26
561 562 0.538287 ACAGGCCTGTTTTCTGAGCC 60.538 55.000 33.20 0.00 41.83 4.70
562 563 1.075659 AGGCCTGTTTTCTGAGCCC 59.924 57.895 3.11 0.00 45.00 5.19
563 564 2.335712 GGCCTGTTTTCTGAGCCCG 61.336 63.158 0.00 0.00 37.66 6.13
564 565 1.302511 GCCTGTTTTCTGAGCCCGA 60.303 57.895 0.00 0.00 0.00 5.14
565 566 0.889186 GCCTGTTTTCTGAGCCCGAA 60.889 55.000 0.00 0.00 0.00 4.30
566 567 0.875059 CCTGTTTTCTGAGCCCGAAC 59.125 55.000 0.00 0.00 0.00 3.95
567 568 0.875059 CTGTTTTCTGAGCCCGAACC 59.125 55.000 0.00 0.00 0.00 3.62
568 569 0.536460 TGTTTTCTGAGCCCGAACCC 60.536 55.000 0.00 0.00 0.00 4.11
569 570 1.302192 TTTTCTGAGCCCGAACCCG 60.302 57.895 0.00 0.00 0.00 5.28
570 571 1.760479 TTTTCTGAGCCCGAACCCGA 61.760 55.000 0.00 0.00 38.22 5.14
571 572 2.444700 TTTCTGAGCCCGAACCCGAC 62.445 60.000 0.00 0.00 38.22 4.79
572 573 4.452733 CTGAGCCCGAACCCGACC 62.453 72.222 0.00 0.00 38.22 4.79
577 578 4.747529 CCCGAACCCGACCCGAAC 62.748 72.222 0.00 0.00 38.22 3.95
578 579 3.993584 CCGAACCCGACCCGAACA 61.994 66.667 0.00 0.00 38.22 3.18
579 580 2.735857 CGAACCCGACCCGAACAC 60.736 66.667 0.00 0.00 38.22 3.32
580 581 2.422591 GAACCCGACCCGAACACA 59.577 61.111 0.00 0.00 0.00 3.72
581 582 1.004200 GAACCCGACCCGAACACAT 60.004 57.895 0.00 0.00 0.00 3.21
582 583 0.247185 GAACCCGACCCGAACACATA 59.753 55.000 0.00 0.00 0.00 2.29
583 584 0.686224 AACCCGACCCGAACACATAA 59.314 50.000 0.00 0.00 0.00 1.90
584 585 0.686224 ACCCGACCCGAACACATAAA 59.314 50.000 0.00 0.00 0.00 1.40
585 586 1.072015 ACCCGACCCGAACACATAAAA 59.928 47.619 0.00 0.00 0.00 1.52
586 587 1.735571 CCCGACCCGAACACATAAAAG 59.264 52.381 0.00 0.00 0.00 2.27
587 588 1.129811 CCGACCCGAACACATAAAAGC 59.870 52.381 0.00 0.00 0.00 3.51
588 589 1.129811 CGACCCGAACACATAAAAGCC 59.870 52.381 0.00 0.00 0.00 4.35
589 590 1.471287 GACCCGAACACATAAAAGCCC 59.529 52.381 0.00 0.00 0.00 5.19
590 591 0.450184 CCCGAACACATAAAAGCCCG 59.550 55.000 0.00 0.00 0.00 6.13
591 592 1.161843 CCGAACACATAAAAGCCCGT 58.838 50.000 0.00 0.00 0.00 5.28
592 593 1.538075 CCGAACACATAAAAGCCCGTT 59.462 47.619 0.00 0.00 0.00 4.44
593 594 2.580589 CGAACACATAAAAGCCCGTTG 58.419 47.619 0.00 0.00 0.00 4.10
594 595 2.667171 CGAACACATAAAAGCCCGTTGG 60.667 50.000 0.00 0.00 0.00 3.77
629 630 2.981350 GCCGGCCCGACTTTCAAA 60.981 61.111 18.11 0.00 0.00 2.69
630 631 2.557372 GCCGGCCCGACTTTCAAAA 61.557 57.895 18.11 0.00 0.00 2.44
631 632 2.034607 CCGGCCCGACTTTCAAAAA 58.965 52.632 3.71 0.00 0.00 1.94
648 649 2.588027 AAAACGCAAAAATGACGGGT 57.412 40.000 0.00 0.00 0.00 5.28
649 650 2.128367 AAACGCAAAAATGACGGGTC 57.872 45.000 0.00 0.00 0.00 4.46
650 651 0.312729 AACGCAAAAATGACGGGTCC 59.687 50.000 0.00 0.00 0.00 4.46
651 652 1.154301 CGCAAAAATGACGGGTCCG 60.154 57.895 7.97 7.97 46.03 4.79
652 653 1.211709 GCAAAAATGACGGGTCCGG 59.788 57.895 14.25 0.00 44.69 5.14
653 654 1.238625 GCAAAAATGACGGGTCCGGA 61.239 55.000 14.25 0.00 44.69 5.14
654 655 0.519961 CAAAAATGACGGGTCCGGAC 59.480 55.000 27.04 27.04 44.69 4.79
663 664 2.350134 GGTCCGGACCCAACCTTC 59.650 66.667 39.24 14.65 45.68 3.46
664 665 2.350134 GTCCGGACCCAACCTTCC 59.650 66.667 24.75 0.00 0.00 3.46
665 666 2.122324 TCCGGACCCAACCTTCCA 60.122 61.111 0.00 0.00 0.00 3.53
666 667 2.221299 TCCGGACCCAACCTTCCAG 61.221 63.158 0.00 0.00 0.00 3.86
667 668 2.359975 CGGACCCAACCTTCCAGC 60.360 66.667 0.00 0.00 0.00 4.85
668 669 2.895424 CGGACCCAACCTTCCAGCT 61.895 63.158 0.00 0.00 0.00 4.24
669 670 1.460699 GGACCCAACCTTCCAGCTT 59.539 57.895 0.00 0.00 0.00 3.74
670 671 0.696501 GGACCCAACCTTCCAGCTTA 59.303 55.000 0.00 0.00 0.00 3.09
671 672 1.074889 GGACCCAACCTTCCAGCTTAA 59.925 52.381 0.00 0.00 0.00 1.85
672 673 2.490168 GGACCCAACCTTCCAGCTTAAA 60.490 50.000 0.00 0.00 0.00 1.52
673 674 3.227614 GACCCAACCTTCCAGCTTAAAA 58.772 45.455 0.00 0.00 0.00 1.52
674 675 3.832490 GACCCAACCTTCCAGCTTAAAAT 59.168 43.478 0.00 0.00 0.00 1.82
675 676 3.832490 ACCCAACCTTCCAGCTTAAAATC 59.168 43.478 0.00 0.00 0.00 2.17
676 677 4.089361 CCCAACCTTCCAGCTTAAAATCT 58.911 43.478 0.00 0.00 0.00 2.40
677 678 5.222254 ACCCAACCTTCCAGCTTAAAATCTA 60.222 40.000 0.00 0.00 0.00 1.98
678 679 5.358160 CCCAACCTTCCAGCTTAAAATCTAG 59.642 44.000 0.00 0.00 0.00 2.43
679 680 5.358160 CCAACCTTCCAGCTTAAAATCTAGG 59.642 44.000 0.00 0.00 0.00 3.02
680 681 4.527944 ACCTTCCAGCTTAAAATCTAGGC 58.472 43.478 0.00 0.00 0.00 3.93
681 682 3.885901 CCTTCCAGCTTAAAATCTAGGCC 59.114 47.826 0.00 0.00 0.00 5.19
682 683 3.577805 TCCAGCTTAAAATCTAGGCCC 57.422 47.619 0.00 0.00 0.00 5.80
683 684 2.158813 TCCAGCTTAAAATCTAGGCCCG 60.159 50.000 0.00 0.00 0.00 6.13
684 685 2.158813 CCAGCTTAAAATCTAGGCCCGA 60.159 50.000 0.00 0.00 0.00 5.14
685 686 3.134458 CAGCTTAAAATCTAGGCCCGAG 58.866 50.000 0.00 0.00 0.00 4.63
686 687 1.874231 GCTTAAAATCTAGGCCCGAGC 59.126 52.381 0.00 0.00 38.76 5.03
687 688 2.745152 GCTTAAAATCTAGGCCCGAGCA 60.745 50.000 0.00 0.00 42.56 4.26
688 689 2.614829 TAAAATCTAGGCCCGAGCAC 57.385 50.000 0.00 0.00 42.56 4.40
689 690 0.462047 AAAATCTAGGCCCGAGCACG 60.462 55.000 0.00 0.00 42.56 5.34
710 711 4.767255 CAGGGGCAGCGTCAGACC 62.767 72.222 0.00 0.00 0.00 3.85
716 717 4.778415 CAGCGTCAGACCGGACCG 62.778 72.222 9.46 6.99 34.24 4.79
731 732 4.227134 CCGGATCGGGTCAGGCTG 62.227 72.222 8.58 8.58 44.15 4.85
732 733 4.899239 CGGATCGGGTCAGGCTGC 62.899 72.222 10.34 4.94 0.00 5.25
733 734 4.554036 GGATCGGGTCAGGCTGCC 62.554 72.222 11.65 11.65 0.00 4.85
734 735 4.554036 GATCGGGTCAGGCTGCCC 62.554 72.222 27.29 27.29 41.45 5.36
738 739 4.828296 GGGTCAGGCTGCCCATGG 62.828 72.222 30.20 4.14 44.23 3.66
748 749 2.512896 GCCCATGGCCAGGACTAG 59.487 66.667 21.32 5.63 44.06 2.57
749 750 2.512896 CCCATGGCCAGGACTAGC 59.487 66.667 21.32 0.00 0.00 3.42
750 751 2.109799 CCATGGCCAGGACTAGCG 59.890 66.667 21.32 0.00 0.00 4.26
751 752 2.109799 CATGGCCAGGACTAGCGG 59.890 66.667 13.35 0.00 0.00 5.52
752 753 3.164269 ATGGCCAGGACTAGCGGG 61.164 66.667 13.05 0.00 0.00 6.13
755 756 4.096003 GCCAGGACTAGCGGGCAA 62.096 66.667 6.64 0.00 45.70 4.52
756 757 2.125106 CCAGGACTAGCGGGCAAC 60.125 66.667 0.00 0.00 0.00 4.17
768 769 3.223589 GGCAACCAAACACGCCCT 61.224 61.111 0.00 0.00 38.67 5.19
769 770 1.899534 GGCAACCAAACACGCCCTA 60.900 57.895 0.00 0.00 38.67 3.53
770 771 1.579429 GCAACCAAACACGCCCTAG 59.421 57.895 0.00 0.00 0.00 3.02
771 772 0.887387 GCAACCAAACACGCCCTAGA 60.887 55.000 0.00 0.00 0.00 2.43
772 773 1.156736 CAACCAAACACGCCCTAGAG 58.843 55.000 0.00 0.00 0.00 2.43
773 774 1.053424 AACCAAACACGCCCTAGAGA 58.947 50.000 0.00 0.00 0.00 3.10
774 775 1.053424 ACCAAACACGCCCTAGAGAA 58.947 50.000 0.00 0.00 0.00 2.87
775 776 1.418637 ACCAAACACGCCCTAGAGAAA 59.581 47.619 0.00 0.00 0.00 2.52
776 777 2.076863 CCAAACACGCCCTAGAGAAAG 58.923 52.381 0.00 0.00 0.00 2.62
890 1061 2.126071 CAGAGTACGTGGCACCCG 60.126 66.667 12.86 3.70 0.00 5.28
901 1072 0.876777 TGGCACCCGTAAATATCGCG 60.877 55.000 0.00 0.00 0.00 5.87
946 1117 0.304705 AAGCGCGCCGAGATATTTTG 59.695 50.000 30.33 0.00 0.00 2.44
1071 1242 4.517934 TCTCCCCGCCCTCCTACG 62.518 72.222 0.00 0.00 0.00 3.51
1120 1293 0.666374 GTGTACCAACCAACCACAGC 59.334 55.000 0.00 0.00 0.00 4.40
1125 1298 1.341976 ACCAACCAACCACAGCTTCTT 60.342 47.619 0.00 0.00 0.00 2.52
1227 1400 3.640000 GCGATTGGGACGGCGATG 61.640 66.667 16.62 0.00 0.00 3.84
1228 1401 3.640000 CGATTGGGACGGCGATGC 61.640 66.667 16.62 2.75 0.00 3.91
1440 1613 1.600916 GTTCTTGCCGGAGCTTGGT 60.601 57.895 5.05 0.00 40.80 3.67
1584 1757 6.122277 TGGGGTAGATTTCTTGATTCATGTC 58.878 40.000 0.00 0.00 0.00 3.06
1656 1841 0.033109 CCTCCATGGTTCCCCTTTCC 60.033 60.000 12.58 0.00 0.00 3.13
1657 1842 1.002857 CTCCATGGTTCCCCTTTCCT 58.997 55.000 12.58 0.00 0.00 3.36
1658 1843 0.999712 TCCATGGTTCCCCTTTCCTC 59.000 55.000 12.58 0.00 0.00 3.71
1659 1844 1.002857 CCATGGTTCCCCTTTCCTCT 58.997 55.000 2.57 0.00 0.00 3.69
1660 1845 1.341383 CCATGGTTCCCCTTTCCTCTG 60.341 57.143 2.57 0.00 0.00 3.35
1661 1846 1.355720 CATGGTTCCCCTTTCCTCTGT 59.644 52.381 0.00 0.00 0.00 3.41
1662 1847 0.771127 TGGTTCCCCTTTCCTCTGTG 59.229 55.000 0.00 0.00 0.00 3.66
1663 1848 0.609406 GGTTCCCCTTTCCTCTGTGC 60.609 60.000 0.00 0.00 0.00 4.57
1664 1849 0.609406 GTTCCCCTTTCCTCTGTGCC 60.609 60.000 0.00 0.00 0.00 5.01
1665 1850 1.789576 TTCCCCTTTCCTCTGTGCCC 61.790 60.000 0.00 0.00 0.00 5.36
1666 1851 2.234296 CCCCTTTCCTCTGTGCCCT 61.234 63.158 0.00 0.00 0.00 5.19
1667 1852 1.301293 CCCTTTCCTCTGTGCCCTC 59.699 63.158 0.00 0.00 0.00 4.30
1668 1853 1.301293 CCTTTCCTCTGTGCCCTCC 59.699 63.158 0.00 0.00 0.00 4.30
1682 1867 3.945285 GTGCCCTCCATAATTCTTCGAAA 59.055 43.478 0.00 0.00 0.00 3.46
1709 1894 5.128335 TGCATCTCACTGAGTTCTATCATGT 59.872 40.000 5.94 0.00 0.00 3.21
1723 1908 9.088512 AGTTCTATCATGTCTTGTATTTTCGTC 57.911 33.333 0.00 0.00 0.00 4.20
1765 1950 1.408127 CCGCATTGTTGGATAGACCCA 60.408 52.381 0.00 0.00 38.00 4.51
1766 1951 2.364632 CGCATTGTTGGATAGACCCAA 58.635 47.619 0.00 0.00 43.42 4.12
1767 1952 2.355756 CGCATTGTTGGATAGACCCAAG 59.644 50.000 0.00 0.00 45.95 3.61
1823 2033 5.350365 CACTTACGCCTGTTAATGCTCTTAA 59.650 40.000 0.00 0.00 0.00 1.85
1850 2060 4.752101 GTGCGCCATTTAGAAGTATGATCT 59.248 41.667 4.18 0.00 0.00 2.75
1868 2078 3.745332 TCTGCGTTCATGCTTGTATTG 57.255 42.857 0.00 0.00 35.36 1.90
1872 2082 5.353956 TCTGCGTTCATGCTTGTATTGTATT 59.646 36.000 0.00 0.00 35.36 1.89
1972 2182 2.629617 TGTCATGAGCAGTGTCAGAAGA 59.370 45.455 0.00 0.00 0.00 2.87
1973 2183 3.070015 TGTCATGAGCAGTGTCAGAAGAA 59.930 43.478 0.00 0.00 0.00 2.52
1974 2184 4.060900 GTCATGAGCAGTGTCAGAAGAAA 58.939 43.478 0.00 0.00 0.00 2.52
2289 2665 8.799091 CATTTACGTGTGTCAATTTGTGTAAAA 58.201 29.630 0.00 0.00 35.13 1.52
2294 2670 9.015577 ACGTGTGTCAATTTGTGTAAAATTTAG 57.984 29.630 0.00 0.00 0.00 1.85
2326 2702 2.705658 TGTCCTCCAGCTCTTTCTTTCA 59.294 45.455 0.00 0.00 0.00 2.69
2434 2811 4.684703 CAGAAGCTTCAGGCAATTTTCTTG 59.315 41.667 27.57 8.93 44.79 3.02
2483 2860 3.037549 TGGTGCTTCCAAAAGATTTGGT 58.962 40.909 18.54 0.00 44.12 3.67
2484 2861 3.181467 TGGTGCTTCCAAAAGATTTGGTG 60.181 43.478 18.54 14.18 44.12 4.17
2485 2862 3.069443 GGTGCTTCCAAAAGATTTGGTGA 59.931 43.478 18.54 9.90 40.40 4.02
2486 2863 4.301628 GTGCTTCCAAAAGATTTGGTGAG 58.698 43.478 18.54 17.33 40.40 3.51
2487 2864 4.037923 GTGCTTCCAAAAGATTTGGTGAGA 59.962 41.667 18.54 0.30 40.40 3.27
2488 2865 4.648762 TGCTTCCAAAAGATTTGGTGAGAA 59.351 37.500 18.54 11.34 40.40 2.87
2489 2866 5.305128 TGCTTCCAAAAGATTTGGTGAGAAT 59.695 36.000 18.54 0.00 40.40 2.40
2490 2867 5.636543 GCTTCCAAAAGATTTGGTGAGAATG 59.363 40.000 18.54 5.71 40.40 2.67
2491 2868 6.517194 GCTTCCAAAAGATTTGGTGAGAATGA 60.517 38.462 18.54 0.00 40.40 2.57
2492 2869 6.975196 TCCAAAAGATTTGGTGAGAATGAA 57.025 33.333 18.54 0.00 40.40 2.57
2493 2870 6.985117 TCCAAAAGATTTGGTGAGAATGAAG 58.015 36.000 18.54 0.00 40.40 3.02
2494 2871 6.777091 TCCAAAAGATTTGGTGAGAATGAAGA 59.223 34.615 18.54 0.00 40.40 2.87
2495 2872 6.865205 CCAAAAGATTTGGTGAGAATGAAGAC 59.135 38.462 12.63 0.00 34.92 3.01
2496 2873 7.255730 CCAAAAGATTTGGTGAGAATGAAGACT 60.256 37.037 12.63 0.00 34.92 3.24
2497 2874 7.830099 AAAGATTTGGTGAGAATGAAGACTT 57.170 32.000 0.00 0.00 0.00 3.01
2498 2875 7.830099 AAGATTTGGTGAGAATGAAGACTTT 57.170 32.000 0.00 0.00 0.00 2.66
2499 2876 7.211966 AGATTTGGTGAGAATGAAGACTTTG 57.788 36.000 0.00 0.00 0.00 2.77
2500 2877 7.000472 AGATTTGGTGAGAATGAAGACTTTGA 59.000 34.615 0.00 0.00 0.00 2.69
2501 2878 7.503566 AGATTTGGTGAGAATGAAGACTTTGAA 59.496 33.333 0.00 0.00 0.00 2.69
2502 2879 6.377327 TTGGTGAGAATGAAGACTTTGAAC 57.623 37.500 0.00 0.00 0.00 3.18
2503 2880 5.684704 TGGTGAGAATGAAGACTTTGAACT 58.315 37.500 0.00 0.00 0.00 3.01
2504 2881 6.122277 TGGTGAGAATGAAGACTTTGAACTT 58.878 36.000 0.00 0.00 0.00 2.66
2505 2882 6.260936 TGGTGAGAATGAAGACTTTGAACTTC 59.739 38.462 0.00 0.00 41.67 3.01
2770 3170 9.922305 GAATACACAGCAATTCAGTTCTAATAC 57.078 33.333 0.00 0.00 33.26 1.89
3055 3455 1.333177 AGACGGTCTGCTCTTTCTGT 58.667 50.000 10.41 0.00 0.00 3.41
3184 3584 8.706936 CCAAGTATCTGATGAAAATATGACTCG 58.293 37.037 0.00 0.00 0.00 4.18
3411 3811 7.357859 GCAGAAAAGACGATGAAATTGTTGAAG 60.358 37.037 0.00 0.00 42.24 3.02
3466 3866 4.634199 AGATGCCAAAAACAACAGGATTG 58.366 39.130 0.00 0.00 0.00 2.67
3504 3904 7.969536 TTTTATGAGCCAGCATTAGATAGAC 57.030 36.000 0.00 0.00 0.00 2.59
3785 4185 6.526674 GGTCCTGCTTATTTGAAATGTTAACG 59.473 38.462 0.00 0.00 0.00 3.18
3995 4395 8.867097 AGTATAACTTGACTTACCTTCTGAACA 58.133 33.333 0.00 0.00 0.00 3.18
4182 4582 5.453567 AAGGTACAATTCCACTTTGCTTC 57.546 39.130 0.00 0.00 0.00 3.86
4304 4707 9.309516 CTTTATTCTTGTATGAAAGCATGCATT 57.690 29.630 21.98 15.23 44.73 3.56
4662 5289 5.932619 TCAGAGGTCGGAAAAATATCAGA 57.067 39.130 0.00 0.00 0.00 3.27
4675 5302 8.699130 GGAAAAATATCAGAAAATGGGAGTGAT 58.301 33.333 0.00 0.00 0.00 3.06
4754 5381 9.750125 AAAGTTGAAAGGTGAAAAATGTATCTC 57.250 29.630 0.00 0.00 0.00 2.75
5065 5692 3.711704 TCTGTAAGAGGCTATTTCCAGGG 59.288 47.826 16.33 0.28 38.67 4.45
5100 5727 2.064434 TCATGGTCACAAGGCAACAA 57.936 45.000 0.00 0.00 41.41 2.83
5352 5983 1.210478 CGGACTCCTCCCATGTCAAAT 59.790 52.381 0.00 0.00 31.93 2.32
5808 6439 3.791953 TTGACCCCAAATACCGAAAGA 57.208 42.857 0.00 0.00 0.00 2.52
5920 6557 6.297080 AGTTCTACTAAGCCTAAACCCTTC 57.703 41.667 0.00 0.00 0.00 3.46
5921 6558 5.189342 AGTTCTACTAAGCCTAAACCCTTCC 59.811 44.000 0.00 0.00 0.00 3.46
5922 6559 4.956582 TCTACTAAGCCTAAACCCTTCCT 58.043 43.478 0.00 0.00 0.00 3.36
5923 6560 6.096164 TCTACTAAGCCTAAACCCTTCCTA 57.904 41.667 0.00 0.00 0.00 2.94
5924 6561 5.896106 TCTACTAAGCCTAAACCCTTCCTAC 59.104 44.000 0.00 0.00 0.00 3.18
5925 6562 4.432316 ACTAAGCCTAAACCCTTCCTACA 58.568 43.478 0.00 0.00 0.00 2.74
5926 6563 3.715638 AAGCCTAAACCCTTCCTACAC 57.284 47.619 0.00 0.00 0.00 2.90
5927 6564 2.627933 AGCCTAAACCCTTCCTACACA 58.372 47.619 0.00 0.00 0.00 3.72
5928 6565 3.190439 AGCCTAAACCCTTCCTACACAT 58.810 45.455 0.00 0.00 0.00 3.21
5929 6566 3.054361 AGCCTAAACCCTTCCTACACATG 60.054 47.826 0.00 0.00 0.00 3.21
5930 6567 3.279434 CCTAAACCCTTCCTACACATGC 58.721 50.000 0.00 0.00 0.00 4.06
5931 6568 2.969821 AAACCCTTCCTACACATGCA 57.030 45.000 0.00 0.00 0.00 3.96
6033 6670 5.250774 ACCAAACCTAAGATCCACACTACAT 59.749 40.000 0.00 0.00 0.00 2.29
6113 6750 5.010708 TCTGTAGCATCCTGGTATATCCA 57.989 43.478 0.00 0.00 45.01 3.41
6166 6805 3.257127 GGTGCTACTCTCTCAACTCACTT 59.743 47.826 0.00 0.00 0.00 3.16
6167 6806 4.262249 GGTGCTACTCTCTCAACTCACTTT 60.262 45.833 0.00 0.00 0.00 2.66
6178 6817 3.822607 CTCACTTTGAGGGACCGAG 57.177 57.895 0.00 0.00 40.71 4.63
6251 6890 3.222603 GTGGAAGATTTGGACCAAGTGT 58.777 45.455 7.01 0.00 34.11 3.55
6441 7082 2.480853 CGACCGGTCGTGATGGAACA 62.481 60.000 41.62 0.00 46.99 3.18
6543 7184 5.342017 TCCTTTTCCTACTCCAGAATCTCA 58.658 41.667 0.00 0.00 0.00 3.27
6547 7188 8.267894 CCTTTTCCTACTCCAGAATCTCATTTA 58.732 37.037 0.00 0.00 0.00 1.40
6990 7631 2.493675 TGAGTCACCAGTATGCTCAGAC 59.506 50.000 0.00 0.00 32.55 3.51
7028 7669 4.651994 CTGAAACGCCTGAAATGTGATAC 58.348 43.478 0.00 0.00 0.00 2.24
7301 7942 0.809241 CATGGAGCTTCGAGTCCAGC 60.809 60.000 15.84 8.71 46.09 4.85
7365 8006 0.169009 GTCAGTTTCCAAGCATCGCC 59.831 55.000 0.00 0.00 0.00 5.54
7523 8164 4.202398 TGGGTTAAAATTTGCATGCAGGAA 60.202 37.500 21.50 13.97 0.00 3.36
7759 8400 7.064609 CGTGACCAAACAGATATTCATAACTGT 59.935 37.037 4.36 4.36 44.83 3.55
7918 8569 2.039879 ACGCTAATGTTTTCTGGACCCT 59.960 45.455 0.00 0.00 0.00 4.34
8063 8725 1.210478 GAGCTCAGGCCTTGGATGTAA 59.790 52.381 9.40 0.00 39.73 2.41
8087 8749 2.537625 CGAACGATCAGCTGAGGAATTC 59.462 50.000 22.96 19.21 0.00 2.17
8110 8772 1.463444 GGACTTGTGTGTAATGACGGC 59.537 52.381 0.00 0.00 0.00 5.68
8115 8777 1.069358 TGTGTGTAATGACGGCACTCA 59.931 47.619 0.00 0.00 35.99 3.41
8119 8781 3.000041 GTGTAATGACGGCACTCATTGA 59.000 45.455 15.12 3.06 40.42 2.57
8140 8802 2.693074 AGGGTTTTCTGCAAATTCGTGT 59.307 40.909 0.00 0.00 0.00 4.49
8150 8812 2.693069 CAAATTCGTGTGAGCTCTCCT 58.307 47.619 16.19 0.00 0.00 3.69
8152 8814 2.376808 ATTCGTGTGAGCTCTCCTTG 57.623 50.000 16.19 4.14 0.00 3.61
8156 8818 1.789506 GTGTGAGCTCTCCTTGTGAC 58.210 55.000 16.19 2.30 0.00 3.67
8157 8819 0.681733 TGTGAGCTCTCCTTGTGACC 59.318 55.000 16.19 0.00 0.00 4.02
8186 8848 7.201857 GGGATCTAGGGAACTTTGATTTCAATG 60.202 40.741 5.03 5.03 43.67 2.82
8232 8894 6.347725 GGTGATGATGAGTTACTTGTTGACAC 60.348 42.308 0.00 0.00 0.00 3.67
8328 8990 5.830991 AGAAGGAGATTGAGCGTCTAACTAT 59.169 40.000 0.00 0.00 0.00 2.12
8447 9109 0.694771 AGAGCAAGAGCATGGGTTCA 59.305 50.000 0.00 0.00 45.49 3.18
8505 9170 3.189702 TCTTACATTGCCAAGCGTTTACC 59.810 43.478 0.00 0.00 0.00 2.85
8541 9206 5.124457 ACATGCCACAAGTAAAATCTAGCAG 59.876 40.000 0.00 0.00 0.00 4.24
8652 9317 9.553064 CACTAATGATTCTCTTAGCCAAGTTAT 57.447 33.333 0.00 0.00 33.20 1.89
8741 9406 8.860128 CCGGAAGTAAGCAATTTAAGAAAATTC 58.140 33.333 0.00 0.00 42.18 2.17
8754 9419 5.689383 AAGAAAATTCTACGCAAGCAAGA 57.311 34.783 0.00 0.00 37.45 3.02
8832 9498 7.205515 AGTTGAGTGGGAAGAAGATCAATAT 57.794 36.000 0.00 0.00 0.00 1.28
8842 9508 6.709846 GGAAGAAGATCAATATCCCAAGACAG 59.290 42.308 0.00 0.00 31.98 3.51
8896 9562 3.976015 ACTTCCTTCAAGGGAACACAAA 58.024 40.909 2.75 0.00 40.08 2.83
8908 9574 4.763793 AGGGAACACAAACTCAAGATGATG 59.236 41.667 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.078516 CTTCCACGACCGTCCCCC 62.079 72.222 0.00 0.00 0.00 5.40
14 15 2.294132 GATCTTCCACGACCGTCCCC 62.294 65.000 0.00 0.00 0.00 4.81
15 16 1.141234 GATCTTCCACGACCGTCCC 59.859 63.158 0.00 0.00 0.00 4.46
16 17 0.245539 TTGATCTTCCACGACCGTCC 59.754 55.000 0.00 0.00 0.00 4.79
17 18 1.347320 GTTGATCTTCCACGACCGTC 58.653 55.000 0.00 0.00 0.00 4.79
18 19 0.388134 CGTTGATCTTCCACGACCGT 60.388 55.000 0.00 0.00 0.00 4.83
19 20 1.683790 GCGTTGATCTTCCACGACCG 61.684 60.000 5.44 0.00 0.00 4.79
20 21 1.359459 GGCGTTGATCTTCCACGACC 61.359 60.000 5.44 3.07 0.00 4.79
21 22 1.683790 CGGCGTTGATCTTCCACGAC 61.684 60.000 0.00 1.51 0.00 4.34
22 23 1.445410 CGGCGTTGATCTTCCACGA 60.445 57.895 0.00 0.00 0.00 4.35
23 24 2.452813 CCGGCGTTGATCTTCCACG 61.453 63.158 6.01 0.00 0.00 4.94
24 25 1.359459 GACCGGCGTTGATCTTCCAC 61.359 60.000 6.01 0.00 0.00 4.02
25 26 1.079405 GACCGGCGTTGATCTTCCA 60.079 57.895 6.01 0.00 0.00 3.53
26 27 2.165301 CGACCGGCGTTGATCTTCC 61.165 63.158 6.01 0.00 34.64 3.46
27 28 2.165301 CCGACCGGCGTTGATCTTC 61.165 63.158 15.38 0.00 38.67 2.87
28 29 2.125673 CCGACCGGCGTTGATCTT 60.126 61.111 15.38 0.00 38.67 2.40
29 30 3.379445 ACCGACCGGCGTTGATCT 61.379 61.111 15.38 0.00 39.32 2.75
30 31 3.186047 CACCGACCGGCGTTGATC 61.186 66.667 15.38 0.00 33.88 2.92
31 32 3.229156 TTCACCGACCGGCGTTGAT 62.229 57.895 16.37 0.00 41.16 2.57
32 33 3.851845 CTTCACCGACCGGCGTTGA 62.852 63.158 12.86 12.86 39.78 3.18
33 34 3.411351 CTTCACCGACCGGCGTTG 61.411 66.667 15.38 12.24 39.32 4.10
34 35 4.675029 CCTTCACCGACCGGCGTT 62.675 66.667 15.38 0.00 39.32 4.84
36 37 4.796231 CTCCTTCACCGACCGGCG 62.796 72.222 8.55 6.30 39.32 6.46
37 38 3.692406 ACTCCTTCACCGACCGGC 61.692 66.667 8.55 0.00 39.32 6.13
38 39 2.261671 CACTCCTTCACCGACCGG 59.738 66.667 6.94 6.94 42.03 5.28
39 40 2.432628 GCACTCCTTCACCGACCG 60.433 66.667 0.00 0.00 0.00 4.79
40 41 2.047179 GGCACTCCTTCACCGACC 60.047 66.667 0.00 0.00 0.00 4.79
43 44 2.432628 GTCGGCACTCCTTCACCG 60.433 66.667 0.00 0.00 46.97 4.94
44 45 2.432628 CGTCGGCACTCCTTCACC 60.433 66.667 0.00 0.00 0.00 4.02
45 46 3.112709 GCGTCGGCACTCCTTCAC 61.113 66.667 0.00 0.00 39.62 3.18
46 47 4.373116 GGCGTCGGCACTCCTTCA 62.373 66.667 14.73 0.00 42.47 3.02
66 67 4.467084 TTCATCGGCCGGCAGTCC 62.467 66.667 30.85 9.91 0.00 3.85
67 68 2.650813 ATCTTCATCGGCCGGCAGTC 62.651 60.000 30.85 10.33 0.00 3.51
68 69 2.735772 ATCTTCATCGGCCGGCAGT 61.736 57.895 30.85 12.37 0.00 4.40
69 70 2.109799 ATCTTCATCGGCCGGCAG 59.890 61.111 30.85 26.21 0.00 4.85
70 71 2.203056 CATCTTCATCGGCCGGCA 60.203 61.111 30.85 9.36 0.00 5.69
71 72 3.654020 GCATCTTCATCGGCCGGC 61.654 66.667 27.83 21.18 0.00 6.13
72 73 3.341043 CGCATCTTCATCGGCCGG 61.341 66.667 27.83 10.69 0.00 6.13
73 74 4.005472 GCGCATCTTCATCGGCCG 62.005 66.667 22.12 22.12 0.00 6.13
74 75 3.654020 GGCGCATCTTCATCGGCC 61.654 66.667 10.83 0.00 41.93 6.13
75 76 4.005472 CGGCGCATCTTCATCGGC 62.005 66.667 10.83 0.00 43.86 5.54
76 77 4.005472 GCGGCGCATCTTCATCGG 62.005 66.667 29.21 0.00 0.00 4.18
77 78 1.215014 TAAGCGGCGCATCTTCATCG 61.215 55.000 35.02 1.11 0.00 3.84
78 79 0.233332 GTAAGCGGCGCATCTTCATC 59.767 55.000 35.02 10.91 0.00 2.92
79 80 0.179073 AGTAAGCGGCGCATCTTCAT 60.179 50.000 35.02 8.42 0.00 2.57
80 81 0.391130 AAGTAAGCGGCGCATCTTCA 60.391 50.000 35.02 3.44 0.00 3.02
81 82 0.026803 CAAGTAAGCGGCGCATCTTC 59.973 55.000 35.02 18.07 0.00 2.87
82 83 1.982073 GCAAGTAAGCGGCGCATCTT 61.982 55.000 35.02 27.66 0.00 2.40
83 84 2.464459 GCAAGTAAGCGGCGCATCT 61.464 57.895 35.02 23.85 0.00 2.90
84 85 2.023320 GCAAGTAAGCGGCGCATC 59.977 61.111 35.02 22.00 0.00 3.91
85 86 2.436646 AGCAAGTAAGCGGCGCAT 60.437 55.556 35.02 25.83 40.15 4.73
86 87 3.118454 GAGCAAGTAAGCGGCGCA 61.118 61.111 35.02 11.99 40.15 6.09
87 88 4.210304 CGAGCAAGTAAGCGGCGC 62.210 66.667 26.86 26.86 40.15 6.53
88 89 2.789203 GACGAGCAAGTAAGCGGCG 61.789 63.158 0.51 0.51 40.92 6.46
89 90 2.789203 CGACGAGCAAGTAAGCGGC 61.789 63.158 0.00 0.00 40.15 6.53
90 91 2.158959 CCGACGAGCAAGTAAGCGG 61.159 63.158 0.00 0.00 40.15 5.52
91 92 1.443872 ACCGACGAGCAAGTAAGCG 60.444 57.895 0.00 0.00 40.15 4.68
92 93 1.956620 GCACCGACGAGCAAGTAAGC 61.957 60.000 0.00 0.00 0.00 3.09
93 94 1.352156 GGCACCGACGAGCAAGTAAG 61.352 60.000 12.97 0.00 0.00 2.34
94 95 1.373748 GGCACCGACGAGCAAGTAA 60.374 57.895 12.97 0.00 0.00 2.24
95 96 2.260434 GGCACCGACGAGCAAGTA 59.740 61.111 12.97 0.00 0.00 2.24
97 98 4.717629 TCGGCACCGACGAGCAAG 62.718 66.667 7.89 7.35 38.55 4.01
120 121 3.927163 TTCGAGCTTTCCGGCCGAC 62.927 63.158 30.73 10.45 35.75 4.79
121 122 3.687102 TTCGAGCTTTCCGGCCGA 61.687 61.111 30.73 10.38 34.83 5.54
122 123 3.488090 GTTCGAGCTTTCCGGCCG 61.488 66.667 21.04 21.04 0.00 6.13
123 124 3.488090 CGTTCGAGCTTTCCGGCC 61.488 66.667 0.00 0.00 0.00 6.13
124 125 3.488090 CCGTTCGAGCTTTCCGGC 61.488 66.667 0.00 0.00 0.00 6.13
125 126 1.805945 CTCCGTTCGAGCTTTCCGG 60.806 63.158 0.00 0.00 39.98 5.14
126 127 1.805945 CCTCCGTTCGAGCTTTCCG 60.806 63.158 0.00 0.00 37.27 4.30
127 128 0.037605 TTCCTCCGTTCGAGCTTTCC 60.038 55.000 0.00 0.00 37.27 3.13
128 129 1.067776 TCTTCCTCCGTTCGAGCTTTC 60.068 52.381 0.00 0.00 37.27 2.62
129 130 0.966920 TCTTCCTCCGTTCGAGCTTT 59.033 50.000 0.00 0.00 37.27 3.51
130 131 0.966920 TTCTTCCTCCGTTCGAGCTT 59.033 50.000 0.00 0.00 37.27 3.74
131 132 1.134965 CATTCTTCCTCCGTTCGAGCT 60.135 52.381 0.00 0.00 37.27 4.09
132 133 1.135083 TCATTCTTCCTCCGTTCGAGC 60.135 52.381 0.00 0.00 37.27 5.03
133 134 2.941453 TCATTCTTCCTCCGTTCGAG 57.059 50.000 0.00 0.00 38.46 4.04
134 135 2.159099 CCATCATTCTTCCTCCGTTCGA 60.159 50.000 0.00 0.00 0.00 3.71
135 136 2.205074 CCATCATTCTTCCTCCGTTCG 58.795 52.381 0.00 0.00 0.00 3.95
136 137 1.943340 GCCATCATTCTTCCTCCGTTC 59.057 52.381 0.00 0.00 0.00 3.95
137 138 1.743772 CGCCATCATTCTTCCTCCGTT 60.744 52.381 0.00 0.00 0.00 4.44
138 139 0.179073 CGCCATCATTCTTCCTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
139 140 0.882042 CCGCCATCATTCTTCCTCCG 60.882 60.000 0.00 0.00 0.00 4.63
140 141 0.536006 CCCGCCATCATTCTTCCTCC 60.536 60.000 0.00 0.00 0.00 4.30
141 142 0.469917 TCCCGCCATCATTCTTCCTC 59.530 55.000 0.00 0.00 0.00 3.71
142 143 0.471617 CTCCCGCCATCATTCTTCCT 59.528 55.000 0.00 0.00 0.00 3.36
143 144 0.181350 ACTCCCGCCATCATTCTTCC 59.819 55.000 0.00 0.00 0.00 3.46
144 145 1.672881 CAACTCCCGCCATCATTCTTC 59.327 52.381 0.00 0.00 0.00 2.87
145 146 1.683011 CCAACTCCCGCCATCATTCTT 60.683 52.381 0.00 0.00 0.00 2.52
146 147 0.107017 CCAACTCCCGCCATCATTCT 60.107 55.000 0.00 0.00 0.00 2.40
147 148 1.103398 CCCAACTCCCGCCATCATTC 61.103 60.000 0.00 0.00 0.00 2.67
148 149 1.076777 CCCAACTCCCGCCATCATT 60.077 57.895 0.00 0.00 0.00 2.57
149 150 2.597340 CCCAACTCCCGCCATCAT 59.403 61.111 0.00 0.00 0.00 2.45
150 151 3.727258 CCCCAACTCCCGCCATCA 61.727 66.667 0.00 0.00 0.00 3.07
157 158 4.410400 CTCACCGCCCCAACTCCC 62.410 72.222 0.00 0.00 0.00 4.30
158 159 4.410400 CCTCACCGCCCCAACTCC 62.410 72.222 0.00 0.00 0.00 3.85
159 160 4.410400 CCCTCACCGCCCCAACTC 62.410 72.222 0.00 0.00 0.00 3.01
160 161 4.974438 TCCCTCACCGCCCCAACT 62.974 66.667 0.00 0.00 0.00 3.16
161 162 4.410400 CTCCCTCACCGCCCCAAC 62.410 72.222 0.00 0.00 0.00 3.77
168 169 1.345715 ATTTAGCCCCTCCCTCACCG 61.346 60.000 0.00 0.00 0.00 4.94
169 170 1.700186 CTATTTAGCCCCTCCCTCACC 59.300 57.143 0.00 0.00 0.00 4.02
170 171 1.700186 CCTATTTAGCCCCTCCCTCAC 59.300 57.143 0.00 0.00 0.00 3.51
171 172 1.416013 CCCTATTTAGCCCCTCCCTCA 60.416 57.143 0.00 0.00 0.00 3.86
172 173 1.363246 CCCTATTTAGCCCCTCCCTC 58.637 60.000 0.00 0.00 0.00 4.30
173 174 0.103876 CCCCTATTTAGCCCCTCCCT 60.104 60.000 0.00 0.00 0.00 4.20
174 175 0.403008 ACCCCTATTTAGCCCCTCCC 60.403 60.000 0.00 0.00 0.00 4.30
175 176 0.771755 CACCCCTATTTAGCCCCTCC 59.228 60.000 0.00 0.00 0.00 4.30
176 177 0.771755 CCACCCCTATTTAGCCCCTC 59.228 60.000 0.00 0.00 0.00 4.30
177 178 0.349091 TCCACCCCTATTTAGCCCCT 59.651 55.000 0.00 0.00 0.00 4.79
178 179 0.477204 GTCCACCCCTATTTAGCCCC 59.523 60.000 0.00 0.00 0.00 5.80
179 180 1.420514 GAGTCCACCCCTATTTAGCCC 59.579 57.143 0.00 0.00 0.00 5.19
180 181 1.070289 CGAGTCCACCCCTATTTAGCC 59.930 57.143 0.00 0.00 0.00 3.93
181 182 1.070289 CCGAGTCCACCCCTATTTAGC 59.930 57.143 0.00 0.00 0.00 3.09
182 183 1.070289 GCCGAGTCCACCCCTATTTAG 59.930 57.143 0.00 0.00 0.00 1.85
183 184 1.125633 GCCGAGTCCACCCCTATTTA 58.874 55.000 0.00 0.00 0.00 1.40
184 185 1.912971 GCCGAGTCCACCCCTATTT 59.087 57.895 0.00 0.00 0.00 1.40
185 186 2.432300 CGCCGAGTCCACCCCTATT 61.432 63.158 0.00 0.00 0.00 1.73
186 187 2.838225 CGCCGAGTCCACCCCTAT 60.838 66.667 0.00 0.00 0.00 2.57
195 196 3.827898 CTCACCTCCCGCCGAGTC 61.828 72.222 0.00 0.00 36.82 3.36
196 197 4.680537 ACTCACCTCCCGCCGAGT 62.681 66.667 0.00 0.00 36.82 4.18
197 198 3.827898 GACTCACCTCCCGCCGAG 61.828 72.222 0.00 0.00 38.46 4.63
200 201 2.240162 ATTTCGACTCACCTCCCGCC 62.240 60.000 0.00 0.00 0.00 6.13
201 202 0.806492 GATTTCGACTCACCTCCCGC 60.806 60.000 0.00 0.00 0.00 6.13
202 203 0.179108 GGATTTCGACTCACCTCCCG 60.179 60.000 0.00 0.00 0.00 5.14
203 204 1.137282 GAGGATTTCGACTCACCTCCC 59.863 57.143 13.00 0.00 40.58 4.30
204 205 2.588027 GAGGATTTCGACTCACCTCC 57.412 55.000 13.00 2.28 40.58 4.30
205 206 1.137282 GGGAGGATTTCGACTCACCTC 59.863 57.143 14.71 14.71 44.21 3.85
206 207 1.196012 GGGAGGATTTCGACTCACCT 58.804 55.000 3.51 1.88 35.45 4.00
207 208 0.179108 CGGGAGGATTTCGACTCACC 60.179 60.000 3.51 3.17 33.59 4.02
208 209 0.531200 ACGGGAGGATTTCGACTCAC 59.469 55.000 3.51 0.00 35.45 3.51
209 210 0.815734 GACGGGAGGATTTCGACTCA 59.184 55.000 3.51 0.00 35.45 3.41
210 211 0.248539 CGACGGGAGGATTTCGACTC 60.249 60.000 0.00 0.00 33.20 3.36
211 212 0.679002 TCGACGGGAGGATTTCGACT 60.679 55.000 0.00 0.00 35.64 4.18
212 213 0.384669 ATCGACGGGAGGATTTCGAC 59.615 55.000 0.00 0.00 42.84 4.20
213 214 1.108776 AATCGACGGGAGGATTTCGA 58.891 50.000 0.00 0.00 44.06 3.71
214 215 1.935933 AAATCGACGGGAGGATTTCG 58.064 50.000 0.00 0.00 38.18 3.46
252 253 2.503061 CAGGGGAGATGGCGTGAG 59.497 66.667 0.00 0.00 0.00 3.51
253 254 3.785859 GCAGGGGAGATGGCGTGA 61.786 66.667 0.00 0.00 0.00 4.35
254 255 3.746949 GAGCAGGGGAGATGGCGTG 62.747 68.421 0.00 0.00 0.00 5.34
255 256 3.474570 GAGCAGGGGAGATGGCGT 61.475 66.667 0.00 0.00 0.00 5.68
256 257 4.598894 CGAGCAGGGGAGATGGCG 62.599 72.222 0.00 0.00 0.00 5.69
257 258 4.925861 GCGAGCAGGGGAGATGGC 62.926 72.222 0.00 0.00 0.00 4.40
258 259 3.473647 TGCGAGCAGGGGAGATGG 61.474 66.667 0.00 0.00 0.00 3.51
259 260 2.202987 GTGCGAGCAGGGGAGATG 60.203 66.667 0.00 0.00 0.00 2.90
260 261 3.842923 CGTGCGAGCAGGGGAGAT 61.843 66.667 9.63 0.00 0.00 2.75
262 263 4.504916 CTCGTGCGAGCAGGGGAG 62.505 72.222 11.78 8.68 34.53 4.30
267 268 4.504916 CTCCCCTCGTGCGAGCAG 62.505 72.222 15.32 8.95 40.69 4.24
269 270 3.708220 CTTCTCCCCTCGTGCGAGC 62.708 68.421 15.32 0.00 40.69 5.03
270 271 2.492090 CTTCTCCCCTCGTGCGAG 59.508 66.667 13.99 13.99 41.63 5.03
271 272 3.760035 GCTTCTCCCCTCGTGCGA 61.760 66.667 0.00 0.00 0.00 5.10
276 277 4.856607 GACGCGCTTCTCCCCTCG 62.857 72.222 5.73 0.00 0.00 4.63
277 278 4.856607 CGACGCGCTTCTCCCCTC 62.857 72.222 12.41 0.00 0.00 4.30
321 322 2.669808 AATCGGCAGTAGCTCGCGAG 62.670 60.000 31.37 31.37 41.70 5.03
322 323 2.663630 GAATCGGCAGTAGCTCGCGA 62.664 60.000 9.26 9.26 41.70 5.87
323 324 2.278857 AATCGGCAGTAGCTCGCG 60.279 61.111 0.00 0.00 41.70 5.87
324 325 1.211818 CTGAATCGGCAGTAGCTCGC 61.212 60.000 0.00 0.00 41.70 5.03
325 326 0.596083 CCTGAATCGGCAGTAGCTCG 60.596 60.000 0.00 0.00 41.70 5.03
326 327 3.280920 CCTGAATCGGCAGTAGCTC 57.719 57.895 0.00 0.00 41.70 4.09
334 335 0.179189 CAAGAAACGCCTGAATCGGC 60.179 55.000 6.13 6.13 46.68 5.54
335 336 0.447801 CCAAGAAACGCCTGAATCGG 59.552 55.000 0.00 0.00 0.00 4.18
336 337 0.447801 CCCAAGAAACGCCTGAATCG 59.552 55.000 0.00 0.00 0.00 3.34
337 338 0.171231 GCCCAAGAAACGCCTGAATC 59.829 55.000 0.00 0.00 0.00 2.52
338 339 1.250840 GGCCCAAGAAACGCCTGAAT 61.251 55.000 0.00 0.00 39.70 2.57
339 340 1.901464 GGCCCAAGAAACGCCTGAA 60.901 57.895 0.00 0.00 39.70 3.02
340 341 2.282180 GGCCCAAGAAACGCCTGA 60.282 61.111 0.00 0.00 39.70 3.86
343 344 3.373565 CCAGGCCCAAGAAACGCC 61.374 66.667 0.00 0.00 43.35 5.68
344 345 2.597510 ACCAGGCCCAAGAAACGC 60.598 61.111 0.00 0.00 0.00 4.84
345 346 1.073199 AGACCAGGCCCAAGAAACG 59.927 57.895 0.00 0.00 0.00 3.60
346 347 0.110486 TCAGACCAGGCCCAAGAAAC 59.890 55.000 0.00 0.00 0.00 2.78
347 348 0.850100 TTCAGACCAGGCCCAAGAAA 59.150 50.000 0.00 0.00 0.00 2.52
348 349 0.110486 GTTCAGACCAGGCCCAAGAA 59.890 55.000 0.00 0.00 0.00 2.52
349 350 1.761174 GTTCAGACCAGGCCCAAGA 59.239 57.895 0.00 0.00 0.00 3.02
350 351 1.672356 CGTTCAGACCAGGCCCAAG 60.672 63.158 0.00 0.00 0.00 3.61
351 352 2.429930 CGTTCAGACCAGGCCCAA 59.570 61.111 0.00 0.00 0.00 4.12
352 353 2.847234 ACGTTCAGACCAGGCCCA 60.847 61.111 0.00 0.00 0.00 5.36
353 354 2.358737 CACGTTCAGACCAGGCCC 60.359 66.667 0.00 0.00 0.00 5.80
354 355 3.050275 GCACGTTCAGACCAGGCC 61.050 66.667 0.00 0.00 0.00 5.19
355 356 1.166531 AAAGCACGTTCAGACCAGGC 61.167 55.000 0.00 0.00 0.00 4.85
356 357 2.163818 TAAAGCACGTTCAGACCAGG 57.836 50.000 0.00 0.00 0.00 4.45
357 358 3.131396 ACTTAAAGCACGTTCAGACCAG 58.869 45.455 0.00 0.00 0.00 4.00
358 359 3.188159 ACTTAAAGCACGTTCAGACCA 57.812 42.857 0.00 0.00 0.00 4.02
359 360 3.059120 GGAACTTAAAGCACGTTCAGACC 60.059 47.826 6.80 0.00 38.94 3.85
360 361 3.362693 CGGAACTTAAAGCACGTTCAGAC 60.363 47.826 6.80 0.00 38.94 3.51
361 362 2.798283 CGGAACTTAAAGCACGTTCAGA 59.202 45.455 6.80 0.00 38.94 3.27
362 363 2.542595 ACGGAACTTAAAGCACGTTCAG 59.457 45.455 6.80 5.41 38.94 3.02
363 364 2.285756 CACGGAACTTAAAGCACGTTCA 59.714 45.455 6.80 0.00 38.94 3.18
364 365 2.899977 CACGGAACTTAAAGCACGTTC 58.100 47.619 0.00 0.00 37.04 3.95
365 366 1.003223 GCACGGAACTTAAAGCACGTT 60.003 47.619 0.00 0.00 31.61 3.99
366 367 0.584876 GCACGGAACTTAAAGCACGT 59.415 50.000 0.00 0.00 34.61 4.49
367 368 0.450482 CGCACGGAACTTAAAGCACG 60.450 55.000 0.00 0.00 0.00 5.34
368 369 0.863144 TCGCACGGAACTTAAAGCAC 59.137 50.000 0.00 0.00 0.00 4.40
369 370 0.863144 GTCGCACGGAACTTAAAGCA 59.137 50.000 0.00 0.00 0.00 3.91
370 371 0.179258 CGTCGCACGGAACTTAAAGC 60.179 55.000 1.40 0.00 38.08 3.51
371 372 0.179258 GCGTCGCACGGAACTTAAAG 60.179 55.000 13.44 0.00 42.82 1.85
372 373 1.854664 GCGTCGCACGGAACTTAAA 59.145 52.632 13.44 0.00 42.82 1.52
373 374 2.366584 CGCGTCGCACGGAACTTAA 61.367 57.895 18.75 0.00 42.82 1.85
374 375 2.801996 CGCGTCGCACGGAACTTA 60.802 61.111 18.75 0.00 42.82 2.24
391 392 2.970324 TTGTCTGCGTTGCGGTCC 60.970 61.111 0.00 0.00 36.18 4.46
392 393 2.248431 GTTGTCTGCGTTGCGGTC 59.752 61.111 0.00 0.00 36.18 4.79
393 394 3.276846 GGTTGTCTGCGTTGCGGT 61.277 61.111 0.00 0.00 36.18 5.68
394 395 2.329678 TTTGGTTGTCTGCGTTGCGG 62.330 55.000 0.00 0.00 36.06 5.69
395 396 1.063327 TTTGGTTGTCTGCGTTGCG 59.937 52.632 0.00 0.00 0.00 4.85
396 397 1.199852 CGTTTGGTTGTCTGCGTTGC 61.200 55.000 0.00 0.00 0.00 4.17
397 398 0.591236 CCGTTTGGTTGTCTGCGTTG 60.591 55.000 0.00 0.00 0.00 4.10
398 399 1.720694 CCCGTTTGGTTGTCTGCGTT 61.721 55.000 0.00 0.00 0.00 4.84
399 400 2.184167 CCCGTTTGGTTGTCTGCGT 61.184 57.895 0.00 0.00 0.00 5.24
400 401 2.637025 CCCGTTTGGTTGTCTGCG 59.363 61.111 0.00 0.00 0.00 5.18
401 402 2.335011 GCCCGTTTGGTTGTCTGC 59.665 61.111 0.00 0.00 36.04 4.26
402 403 1.826054 TGGCCCGTTTGGTTGTCTG 60.826 57.895 0.00 0.00 36.04 3.51
403 404 1.826487 GTGGCCCGTTTGGTTGTCT 60.826 57.895 0.00 0.00 36.04 3.41
404 405 1.388837 AAGTGGCCCGTTTGGTTGTC 61.389 55.000 0.00 0.00 36.04 3.18
405 406 0.973496 AAAGTGGCCCGTTTGGTTGT 60.973 50.000 0.00 0.00 36.04 3.32
406 407 0.249280 GAAAGTGGCCCGTTTGGTTG 60.249 55.000 0.00 0.00 36.04 3.77
407 408 0.396556 AGAAAGTGGCCCGTTTGGTT 60.397 50.000 0.00 0.00 36.04 3.67
408 409 0.396556 AAGAAAGTGGCCCGTTTGGT 60.397 50.000 0.00 0.00 36.04 3.67
409 410 0.313987 GAAGAAAGTGGCCCGTTTGG 59.686 55.000 0.00 0.00 37.09 3.28
410 411 0.313987 GGAAGAAAGTGGCCCGTTTG 59.686 55.000 0.00 0.00 0.00 2.93
411 412 0.826256 GGGAAGAAAGTGGCCCGTTT 60.826 55.000 0.00 0.00 0.00 3.60
412 413 1.228459 GGGAAGAAAGTGGCCCGTT 60.228 57.895 0.00 0.00 0.00 4.44
413 414 2.434774 GGGAAGAAAGTGGCCCGT 59.565 61.111 0.00 0.00 0.00 5.28
415 416 3.062466 GCGGGAAGAAAGTGGCCC 61.062 66.667 0.00 0.00 37.21 5.80
416 417 3.431725 CGCGGGAAGAAAGTGGCC 61.432 66.667 0.00 0.00 0.00 5.36
417 418 4.103103 GCGCGGGAAGAAAGTGGC 62.103 66.667 8.83 0.00 0.00 5.01
418 419 3.788766 CGCGCGGGAAGAAAGTGG 61.789 66.667 24.84 0.00 0.00 4.00
419 420 3.788766 CCGCGCGGGAAGAAAGTG 61.789 66.667 40.50 11.24 38.47 3.16
420 421 3.998672 TCCGCGCGGGAAGAAAGT 61.999 61.111 44.95 0.00 43.62 2.66
434 435 1.338136 ATTAGGCCCAGTCTGGTCCG 61.338 60.000 17.85 3.75 35.17 4.79
435 436 1.416772 GTATTAGGCCCAGTCTGGTCC 59.583 57.143 17.85 14.75 35.17 4.46
436 437 1.068741 CGTATTAGGCCCAGTCTGGTC 59.931 57.143 17.85 4.51 35.17 4.02
437 438 1.120530 CGTATTAGGCCCAGTCTGGT 58.879 55.000 17.85 1.87 35.17 4.00
438 439 0.393077 CCGTATTAGGCCCAGTCTGG 59.607 60.000 12.40 12.40 37.25 3.86
439 440 0.393077 CCCGTATTAGGCCCAGTCTG 59.607 60.000 0.00 0.00 0.00 3.51
440 441 1.408453 GCCCGTATTAGGCCCAGTCT 61.408 60.000 0.00 0.00 45.16 3.24
441 442 1.070957 GCCCGTATTAGGCCCAGTC 59.929 63.158 0.00 0.00 45.16 3.51
442 443 3.237414 GCCCGTATTAGGCCCAGT 58.763 61.111 0.00 0.00 45.16 4.00
448 449 4.766375 CCAGGTATATTGCCCGTATTAGG 58.234 47.826 0.00 0.00 0.00 2.69
449 450 4.189231 GCCAGGTATATTGCCCGTATTAG 58.811 47.826 0.00 0.00 0.00 1.73
450 451 3.054948 GGCCAGGTATATTGCCCGTATTA 60.055 47.826 0.00 0.00 37.94 0.98
451 452 2.290705 GGCCAGGTATATTGCCCGTATT 60.291 50.000 0.00 0.00 37.94 1.89
452 453 1.280998 GGCCAGGTATATTGCCCGTAT 59.719 52.381 0.00 0.00 37.94 3.06
453 454 0.688487 GGCCAGGTATATTGCCCGTA 59.312 55.000 0.00 0.00 37.94 4.02
454 455 1.349542 TGGCCAGGTATATTGCCCGT 61.350 55.000 0.00 0.00 43.35 5.28
455 456 0.038166 ATGGCCAGGTATATTGCCCG 59.962 55.000 13.05 0.00 43.35 6.13
456 457 2.620627 GGTATGGCCAGGTATATTGCCC 60.621 54.545 13.05 0.00 43.35 5.36
457 458 2.308866 AGGTATGGCCAGGTATATTGCC 59.691 50.000 13.05 5.30 44.27 4.52
458 459 3.610911 GAGGTATGGCCAGGTATATTGC 58.389 50.000 13.05 0.00 40.61 3.56
459 460 3.369471 CCGAGGTATGGCCAGGTATATTG 60.369 52.174 13.05 0.00 40.61 1.90
460 461 2.838202 CCGAGGTATGGCCAGGTATATT 59.162 50.000 13.05 0.00 40.61 1.28
461 462 2.225547 ACCGAGGTATGGCCAGGTATAT 60.226 50.000 13.05 0.00 44.79 0.86
462 463 1.148446 ACCGAGGTATGGCCAGGTATA 59.852 52.381 13.05 0.00 44.79 1.47
463 464 0.105142 ACCGAGGTATGGCCAGGTAT 60.105 55.000 13.05 0.00 44.79 2.73
464 465 0.757935 GACCGAGGTATGGCCAGGTA 60.758 60.000 13.05 0.00 45.96 3.08
465 466 2.040606 ACCGAGGTATGGCCAGGT 59.959 61.111 13.05 9.21 42.86 4.00
466 467 2.808206 GGACCGAGGTATGGCCAGG 61.808 68.421 13.05 8.44 41.27 4.45
467 468 2.032860 CTGGACCGAGGTATGGCCAG 62.033 65.000 13.05 11.71 41.25 4.85
468 469 2.039787 TGGACCGAGGTATGGCCA 59.960 61.111 8.56 8.56 40.61 5.36
469 470 2.808206 CCTGGACCGAGGTATGGCC 61.808 68.421 0.00 0.00 37.58 5.36
470 471 2.822399 CCTGGACCGAGGTATGGC 59.178 66.667 0.00 0.00 0.00 4.40
471 472 2.808206 GGCCTGGACCGAGGTATGG 61.808 68.421 0.00 0.00 35.29 2.74
472 473 2.822399 GGCCTGGACCGAGGTATG 59.178 66.667 0.00 0.00 35.29 2.39
493 494 0.679640 TTGCATCGGGCTTGGTTAGG 60.680 55.000 0.00 0.00 45.15 2.69
494 495 1.173043 TTTGCATCGGGCTTGGTTAG 58.827 50.000 0.00 0.00 45.15 2.34
495 496 1.621992 TTTTGCATCGGGCTTGGTTA 58.378 45.000 0.00 0.00 45.15 2.85
496 497 0.755686 TTTTTGCATCGGGCTTGGTT 59.244 45.000 0.00 0.00 45.15 3.67
497 498 2.435418 TTTTTGCATCGGGCTTGGT 58.565 47.368 0.00 0.00 45.15 3.67
512 513 4.198087 GCCCAGGCCTGAGTTTTT 57.802 55.556 34.91 0.00 34.56 1.94
528 529 2.439156 CTGTTGGCAGGGCTAGGC 60.439 66.667 8.00 8.00 39.01 3.93
543 544 2.261215 GGCTCAGAAAACAGGCCTG 58.739 57.895 31.60 31.60 39.68 4.85
544 545 4.830573 GGCTCAGAAAACAGGCCT 57.169 55.556 0.00 0.00 39.68 5.19
546 547 0.889186 TTCGGGCTCAGAAAACAGGC 60.889 55.000 0.00 0.00 34.44 4.85
547 548 0.875059 GTTCGGGCTCAGAAAACAGG 59.125 55.000 0.00 0.00 0.00 4.00
548 549 0.875059 GGTTCGGGCTCAGAAAACAG 59.125 55.000 0.00 0.00 0.00 3.16
549 550 0.536460 GGGTTCGGGCTCAGAAAACA 60.536 55.000 0.00 0.00 0.00 2.83
550 551 1.574702 CGGGTTCGGGCTCAGAAAAC 61.575 60.000 0.00 0.00 0.00 2.43
551 552 1.302192 CGGGTTCGGGCTCAGAAAA 60.302 57.895 0.00 0.00 0.00 2.29
552 553 2.211410 TCGGGTTCGGGCTCAGAAA 61.211 57.895 0.00 0.00 36.95 2.52
553 554 2.602267 TCGGGTTCGGGCTCAGAA 60.602 61.111 0.00 0.00 36.95 3.02
554 555 3.379445 GTCGGGTTCGGGCTCAGA 61.379 66.667 0.00 0.00 36.95 3.27
555 556 4.452733 GGTCGGGTTCGGGCTCAG 62.453 72.222 0.00 0.00 36.95 3.35
560 561 4.747529 GTTCGGGTCGGGTTCGGG 62.748 72.222 0.00 0.00 36.95 5.14
561 562 3.993584 TGTTCGGGTCGGGTTCGG 61.994 66.667 0.00 0.00 36.95 4.30
562 563 2.735857 GTGTTCGGGTCGGGTTCG 60.736 66.667 0.00 0.00 37.82 3.95
563 564 0.247185 TATGTGTTCGGGTCGGGTTC 59.753 55.000 0.00 0.00 0.00 3.62
564 565 0.686224 TTATGTGTTCGGGTCGGGTT 59.314 50.000 0.00 0.00 0.00 4.11
565 566 0.686224 TTTATGTGTTCGGGTCGGGT 59.314 50.000 0.00 0.00 0.00 5.28
566 567 1.735571 CTTTTATGTGTTCGGGTCGGG 59.264 52.381 0.00 0.00 0.00 5.14
567 568 1.129811 GCTTTTATGTGTTCGGGTCGG 59.870 52.381 0.00 0.00 0.00 4.79
568 569 1.129811 GGCTTTTATGTGTTCGGGTCG 59.870 52.381 0.00 0.00 0.00 4.79
569 570 1.471287 GGGCTTTTATGTGTTCGGGTC 59.529 52.381 0.00 0.00 0.00 4.46
570 571 1.541379 GGGCTTTTATGTGTTCGGGT 58.459 50.000 0.00 0.00 0.00 5.28
571 572 0.450184 CGGGCTTTTATGTGTTCGGG 59.550 55.000 0.00 0.00 0.00 5.14
572 573 1.161843 ACGGGCTTTTATGTGTTCGG 58.838 50.000 0.00 0.00 0.00 4.30
573 574 2.580589 CAACGGGCTTTTATGTGTTCG 58.419 47.619 0.00 0.00 0.00 3.95
574 575 2.352323 CCCAACGGGCTTTTATGTGTTC 60.352 50.000 0.00 0.00 35.35 3.18
575 576 1.616374 CCCAACGGGCTTTTATGTGTT 59.384 47.619 0.00 0.00 35.35 3.32
576 577 1.253100 CCCAACGGGCTTTTATGTGT 58.747 50.000 0.00 0.00 35.35 3.72
612 613 2.077821 TTTTTGAAAGTCGGGCCGGC 62.078 55.000 25.64 25.64 0.00 6.13
613 614 2.034607 TTTTTGAAAGTCGGGCCGG 58.965 52.632 27.98 7.65 0.00 6.13
628 629 2.861335 GACCCGTCATTTTTGCGTTTTT 59.139 40.909 0.00 0.00 0.00 1.94
629 630 2.465855 GACCCGTCATTTTTGCGTTTT 58.534 42.857 0.00 0.00 0.00 2.43
630 631 1.269361 GGACCCGTCATTTTTGCGTTT 60.269 47.619 0.00 0.00 0.00 3.60
631 632 0.312729 GGACCCGTCATTTTTGCGTT 59.687 50.000 0.00 0.00 0.00 4.84
632 633 1.847890 CGGACCCGTCATTTTTGCGT 61.848 55.000 0.00 0.00 34.35 5.24
633 634 1.154301 CGGACCCGTCATTTTTGCG 60.154 57.895 0.00 0.00 34.35 4.85
634 635 1.211709 CCGGACCCGTCATTTTTGC 59.788 57.895 0.00 0.00 37.81 3.68
635 636 0.519961 GTCCGGACCCGTCATTTTTG 59.480 55.000 24.75 0.00 37.81 2.44
636 637 0.607217 GGTCCGGACCCGTCATTTTT 60.607 55.000 39.24 0.00 45.68 1.94
637 638 1.002990 GGTCCGGACCCGTCATTTT 60.003 57.895 39.24 0.00 45.68 1.82
638 639 2.666812 GGTCCGGACCCGTCATTT 59.333 61.111 39.24 0.00 45.68 2.32
647 648 2.350134 GGAAGGTTGGGTCCGGAC 59.650 66.667 27.04 27.04 0.00 4.79
648 649 2.122324 TGGAAGGTTGGGTCCGGA 60.122 61.111 0.00 0.00 36.65 5.14
649 650 2.351276 CTGGAAGGTTGGGTCCGG 59.649 66.667 0.00 0.00 36.65 5.14
650 651 2.359975 GCTGGAAGGTTGGGTCCG 60.360 66.667 0.00 0.00 36.65 4.79
651 652 3.171348 AGCTGGAAGGTTGGGTCC 58.829 61.111 0.00 0.00 46.63 4.46
659 660 3.885901 GGCCTAGATTTTAAGCTGGAAGG 59.114 47.826 0.00 0.00 0.00 3.46
660 661 3.885901 GGGCCTAGATTTTAAGCTGGAAG 59.114 47.826 0.84 0.00 0.00 3.46
661 662 3.684413 CGGGCCTAGATTTTAAGCTGGAA 60.684 47.826 0.84 0.00 0.00 3.53
662 663 2.158813 CGGGCCTAGATTTTAAGCTGGA 60.159 50.000 0.84 0.00 0.00 3.86
663 664 2.158813 TCGGGCCTAGATTTTAAGCTGG 60.159 50.000 0.84 0.00 0.00 4.85
664 665 3.134458 CTCGGGCCTAGATTTTAAGCTG 58.866 50.000 0.84 0.00 0.00 4.24
665 666 2.485657 GCTCGGGCCTAGATTTTAAGCT 60.486 50.000 9.63 0.00 0.00 3.74
666 667 1.874231 GCTCGGGCCTAGATTTTAAGC 59.126 52.381 9.63 0.00 0.00 3.09
667 668 2.872858 GTGCTCGGGCCTAGATTTTAAG 59.127 50.000 9.63 0.00 37.74 1.85
668 669 2.740580 CGTGCTCGGGCCTAGATTTTAA 60.741 50.000 9.63 0.00 37.74 1.52
669 670 1.202486 CGTGCTCGGGCCTAGATTTTA 60.202 52.381 9.63 0.00 37.74 1.52
670 671 0.462047 CGTGCTCGGGCCTAGATTTT 60.462 55.000 9.63 0.00 37.74 1.82
671 672 1.144057 CGTGCTCGGGCCTAGATTT 59.856 57.895 9.63 0.00 37.74 2.17
672 673 2.815308 CGTGCTCGGGCCTAGATT 59.185 61.111 9.63 0.00 37.74 2.40
693 694 4.767255 GGTCTGACGCTGCCCCTG 62.767 72.222 1.07 0.00 0.00 4.45
699 700 4.778415 CGGTCCGGTCTGACGCTG 62.778 72.222 2.34 0.00 36.07 5.18
713 714 4.779733 AGCCTGACCCGATCCGGT 62.780 66.667 5.33 5.33 46.80 5.28
715 716 4.899239 GCAGCCTGACCCGATCCG 62.899 72.222 0.00 0.00 0.00 4.18
716 717 4.554036 GGCAGCCTGACCCGATCC 62.554 72.222 3.29 0.00 0.00 3.36
717 718 4.554036 GGGCAGCCTGACCCGATC 62.554 72.222 4.80 0.00 40.64 3.69
732 733 2.512896 GCTAGTCCTGGCCATGGG 59.487 66.667 15.13 4.96 0.00 4.00
733 734 2.109799 CGCTAGTCCTGGCCATGG 59.890 66.667 5.51 7.63 33.13 3.66
734 735 2.109799 CCGCTAGTCCTGGCCATG 59.890 66.667 5.51 2.84 33.13 3.66
735 736 3.164269 CCCGCTAGTCCTGGCCAT 61.164 66.667 5.51 0.00 33.13 4.40
738 739 4.096003 TTGCCCGCTAGTCCTGGC 62.096 66.667 6.92 6.92 44.27 4.85
739 740 2.125106 GTTGCCCGCTAGTCCTGG 60.125 66.667 0.00 0.00 0.00 4.45
740 741 2.125106 GGTTGCCCGCTAGTCCTG 60.125 66.667 0.00 0.00 0.00 3.86
741 742 1.774894 TTTGGTTGCCCGCTAGTCCT 61.775 55.000 0.00 0.00 0.00 3.85
742 743 1.302993 TTTGGTTGCCCGCTAGTCC 60.303 57.895 0.00 0.00 0.00 3.85
743 744 0.887387 TGTTTGGTTGCCCGCTAGTC 60.887 55.000 0.00 0.00 0.00 2.59
744 745 1.149627 TGTTTGGTTGCCCGCTAGT 59.850 52.632 0.00 0.00 0.00 2.57
745 746 1.579429 GTGTTTGGTTGCCCGCTAG 59.421 57.895 0.00 0.00 0.00 3.42
746 747 2.255172 CGTGTTTGGTTGCCCGCTA 61.255 57.895 0.00 0.00 0.00 4.26
747 748 3.591835 CGTGTTTGGTTGCCCGCT 61.592 61.111 0.00 0.00 0.00 5.52
749 750 4.639171 GGCGTGTTTGGTTGCCCG 62.639 66.667 0.00 0.00 41.70 6.13
751 752 1.862602 CTAGGGCGTGTTTGGTTGCC 61.863 60.000 0.00 0.00 46.82 4.52
752 753 0.887387 TCTAGGGCGTGTTTGGTTGC 60.887 55.000 0.00 0.00 0.00 4.17
753 754 1.156736 CTCTAGGGCGTGTTTGGTTG 58.843 55.000 0.00 0.00 0.00 3.77
754 755 1.053424 TCTCTAGGGCGTGTTTGGTT 58.947 50.000 0.00 0.00 0.00 3.67
755 756 1.053424 TTCTCTAGGGCGTGTTTGGT 58.947 50.000 0.00 0.00 0.00 3.67
756 757 2.076863 CTTTCTCTAGGGCGTGTTTGG 58.923 52.381 0.00 0.00 0.00 3.28
757 758 2.996621 CTCTTTCTCTAGGGCGTGTTTG 59.003 50.000 0.00 0.00 0.00 2.93
758 759 2.028020 CCTCTTTCTCTAGGGCGTGTTT 60.028 50.000 0.00 0.00 0.00 2.83
759 760 1.550976 CCTCTTTCTCTAGGGCGTGTT 59.449 52.381 0.00 0.00 0.00 3.32
760 761 1.187087 CCTCTTTCTCTAGGGCGTGT 58.813 55.000 0.00 0.00 0.00 4.49
761 762 1.407258 CTCCTCTTTCTCTAGGGCGTG 59.593 57.143 0.00 0.00 33.40 5.34
762 763 1.006162 ACTCCTCTTTCTCTAGGGCGT 59.994 52.381 0.00 0.00 33.40 5.68
763 764 1.679153 GACTCCTCTTTCTCTAGGGCG 59.321 57.143 0.00 0.00 33.40 6.13
764 765 2.036387 GGACTCCTCTTTCTCTAGGGC 58.964 57.143 0.00 0.00 33.40 5.19
765 766 3.053245 TCAGGACTCCTCTTTCTCTAGGG 60.053 52.174 0.00 0.00 33.40 3.53
766 767 4.243793 TCAGGACTCCTCTTTCTCTAGG 57.756 50.000 0.00 0.00 0.00 3.02
767 768 5.505780 TCTTCAGGACTCCTCTTTCTCTAG 58.494 45.833 0.00 0.00 0.00 2.43
768 769 5.522315 TCTTCAGGACTCCTCTTTCTCTA 57.478 43.478 0.00 0.00 0.00 2.43
769 770 4.396357 TCTTCAGGACTCCTCTTTCTCT 57.604 45.455 0.00 0.00 0.00 3.10
770 771 5.675684 AATCTTCAGGACTCCTCTTTCTC 57.324 43.478 0.00 0.00 0.00 2.87
771 772 5.280419 CCAAATCTTCAGGACTCCTCTTTCT 60.280 44.000 0.00 0.00 0.00 2.52
772 773 4.940654 CCAAATCTTCAGGACTCCTCTTTC 59.059 45.833 0.00 0.00 0.00 2.62
773 774 4.809007 GCCAAATCTTCAGGACTCCTCTTT 60.809 45.833 0.00 0.00 0.00 2.52
774 775 3.308046 GCCAAATCTTCAGGACTCCTCTT 60.308 47.826 0.00 0.00 0.00 2.85
775 776 2.238395 GCCAAATCTTCAGGACTCCTCT 59.762 50.000 0.00 0.00 0.00 3.69
776 777 2.238395 AGCCAAATCTTCAGGACTCCTC 59.762 50.000 0.00 0.00 0.00 3.71
890 1061 0.802494 CCCATGCCCGCGATATTTAC 59.198 55.000 8.23 0.00 0.00 2.01
901 1072 4.764771 TTCTGCAGCCCCATGCCC 62.765 66.667 9.47 0.00 45.91 5.36
912 1083 2.592212 GCTTTGCGCTTTTTCTGCA 58.408 47.368 9.73 0.00 36.72 4.41
946 1117 0.038166 TTGGATCCAGCCAGTCAACC 59.962 55.000 15.53 0.00 39.52 3.77
1120 1293 2.804933 GCGCAGGATTAGGGAGAAGAAG 60.805 54.545 0.30 0.00 0.00 2.85
1125 1298 1.455032 TCGCGCAGGATTAGGGAGA 60.455 57.895 8.75 0.00 0.00 3.71
1289 1462 2.877691 GTGAATCCACTTGCGCCC 59.122 61.111 4.18 0.00 40.10 6.13
1440 1613 2.342279 CCGCGAGTTCAGGAACCA 59.658 61.111 8.23 0.00 42.06 3.67
1584 1757 1.079543 CCCGAAGCTGAGACTGGTG 60.080 63.158 0.00 0.00 0.00 4.17
1656 1841 3.853355 AGAATTATGGAGGGCACAGAG 57.147 47.619 0.00 0.00 0.00 3.35
1657 1842 3.432186 CGAAGAATTATGGAGGGCACAGA 60.432 47.826 0.00 0.00 0.00 3.41
1658 1843 2.874701 CGAAGAATTATGGAGGGCACAG 59.125 50.000 0.00 0.00 0.00 3.66
1659 1844 2.503765 TCGAAGAATTATGGAGGGCACA 59.496 45.455 0.00 0.00 0.00 4.57
1660 1845 3.194005 TCGAAGAATTATGGAGGGCAC 57.806 47.619 0.00 0.00 0.00 5.01
1661 1846 3.924114 TTCGAAGAATTATGGAGGGCA 57.076 42.857 0.00 0.00 45.90 5.36
1662 1847 4.580580 ACATTTCGAAGAATTATGGAGGGC 59.419 41.667 10.61 0.00 45.90 5.19
1663 1848 5.506317 GCACATTTCGAAGAATTATGGAGGG 60.506 44.000 10.61 0.85 45.90 4.30
1664 1849 5.066375 TGCACATTTCGAAGAATTATGGAGG 59.934 40.000 10.61 2.76 45.90 4.30
1665 1850 6.122850 TGCACATTTCGAAGAATTATGGAG 57.877 37.500 10.61 5.00 45.90 3.86
1666 1851 6.543465 AGATGCACATTTCGAAGAATTATGGA 59.457 34.615 10.61 2.32 45.90 3.41
1667 1852 6.732154 AGATGCACATTTCGAAGAATTATGG 58.268 36.000 10.61 2.71 45.90 2.74
1668 1853 7.375280 GTGAGATGCACATTTCGAAGAATTATG 59.625 37.037 0.00 1.39 46.91 1.90
1709 1894 6.032094 GGATAGACGTGACGAAAATACAAGA 58.968 40.000 13.70 0.00 0.00 3.02
1723 1908 3.363970 GCAAACAACACAGGATAGACGTG 60.364 47.826 0.00 0.00 39.84 4.49
1774 1959 9.152327 TGGATGAATCTATGACAGTAGAGAATT 57.848 33.333 0.00 0.00 34.41 2.17
1798 2008 2.351726 GAGCATTAACAGGCGTAAGTGG 59.648 50.000 0.00 0.00 41.68 4.00
1823 2033 0.796312 CTTCTAAATGGCGCACGTGT 59.204 50.000 18.38 0.00 0.00 4.49
1850 2060 5.559427 AATACAATACAAGCATGAACGCA 57.441 34.783 0.00 0.00 0.00 5.24
1891 2101 2.861360 GCGCTACATACTTACTTCCCGG 60.861 54.545 0.00 0.00 0.00 5.73
2289 2665 4.884164 GGAGGACAACAATAGCTGCTAAAT 59.116 41.667 14.13 2.96 0.00 1.40
2294 2670 2.012673 CTGGAGGACAACAATAGCTGC 58.987 52.381 0.00 0.00 0.00 5.25
2342 2718 4.666512 ACCTGTCTATGCCAAATGAAACT 58.333 39.130 0.00 0.00 0.00 2.66
2434 2811 6.983307 AGACATGACTATATGCAGTTCAGTTC 59.017 38.462 0.00 0.00 0.00 3.01
2483 2860 6.017605 GCAGAAGTTCAAAGTCTTCATTCTCA 60.018 38.462 5.50 0.00 41.46 3.27
2484 2861 6.204495 AGCAGAAGTTCAAAGTCTTCATTCTC 59.796 38.462 5.50 0.00 41.46 2.87
2485 2862 6.017275 CAGCAGAAGTTCAAAGTCTTCATTCT 60.017 38.462 5.50 0.00 41.46 2.40
2486 2863 6.017605 TCAGCAGAAGTTCAAAGTCTTCATTC 60.018 38.462 5.50 0.00 41.46 2.67
2487 2864 5.824624 TCAGCAGAAGTTCAAAGTCTTCATT 59.175 36.000 5.50 0.00 41.46 2.57
2488 2865 5.371526 TCAGCAGAAGTTCAAAGTCTTCAT 58.628 37.500 5.50 0.00 41.46 2.57
2489 2866 4.769688 TCAGCAGAAGTTCAAAGTCTTCA 58.230 39.130 5.50 0.00 41.46 3.02
2490 2867 4.319405 GCTCAGCAGAAGTTCAAAGTCTTC 60.319 45.833 5.50 0.00 39.93 2.87
2491 2868 3.563390 GCTCAGCAGAAGTTCAAAGTCTT 59.437 43.478 5.50 0.00 0.00 3.01
2492 2869 3.137533 GCTCAGCAGAAGTTCAAAGTCT 58.862 45.455 5.50 0.00 0.00 3.24
2493 2870 2.874701 TGCTCAGCAGAAGTTCAAAGTC 59.125 45.455 0.00 0.00 33.32 3.01
2494 2871 2.923121 TGCTCAGCAGAAGTTCAAAGT 58.077 42.857 0.00 0.00 33.32 2.66
2495 2872 3.976793 TTGCTCAGCAGAAGTTCAAAG 57.023 42.857 0.00 0.00 40.61 2.77
2496 2873 4.675510 CTTTTGCTCAGCAGAAGTTCAAA 58.324 39.130 19.60 6.07 43.01 2.69
2497 2874 4.297299 CTTTTGCTCAGCAGAAGTTCAA 57.703 40.909 19.60 0.00 43.01 2.69
2498 2875 3.976793 CTTTTGCTCAGCAGAAGTTCA 57.023 42.857 19.60 0.00 43.01 3.18
2503 2880 5.247862 TGATATCACTTTTGCTCAGCAGAA 58.752 37.500 0.00 0.00 40.61 3.02
2504 2881 4.835678 TGATATCACTTTTGCTCAGCAGA 58.164 39.130 0.00 0.00 40.61 4.26
2505 2882 4.874396 TCTGATATCACTTTTGCTCAGCAG 59.126 41.667 0.00 0.00 40.61 4.24
2705 3105 3.517296 TGGCTAACTCCAACCATCAAA 57.483 42.857 0.00 0.00 32.18 2.69
2770 3170 0.107703 ATCATGTGCTACACCCCACG 60.108 55.000 0.00 0.00 34.77 4.94
2984 3384 7.852971 ATTGATTGCAAACATAGGAAAATGG 57.147 32.000 10.44 0.00 37.59 3.16
3411 3811 4.578928 TCCTAACTTCTGTTCCAACAAAGC 59.421 41.667 11.25 0.00 38.66 3.51
3466 3866 6.183361 TGGCTCATAAAATACTACTTCCTCCC 60.183 42.308 0.00 0.00 0.00 4.30
3504 3904 6.916387 GCATCAACTGATTTCATCTGGTATTG 59.084 38.462 0.00 0.00 31.21 1.90
3785 4185 4.576463 GTGAGATGTGATTTGGATGGTACC 59.424 45.833 4.43 4.43 0.00 3.34
3995 4395 0.254178 GTCATCCAGGTGCACCAGAT 59.746 55.000 36.39 31.19 38.89 2.90
4082 4482 6.054860 ACATTACAATGAGCAGAGGTAGTT 57.945 37.500 8.89 0.00 39.67 2.24
4182 4582 8.978564 TTGGTTGCACATAGTAAATTAACATG 57.021 30.769 0.00 0.00 0.00 3.21
4198 4600 3.821033 ACCAGACTATCTTTTGGTTGCAC 59.179 43.478 0.00 0.00 40.94 4.57
4696 5323 7.287061 TGAAACCAGTTCTTCTAATCCTGAAA 58.713 34.615 0.00 0.00 37.13 2.69
4885 5512 2.100631 CAGGGAAAGGCTGCGTACG 61.101 63.158 11.84 11.84 0.00 3.67
4974 5601 2.589157 CCCGGACCCTACACAAGCA 61.589 63.158 0.73 0.00 0.00 3.91
5065 5692 0.460284 ATGATGTCACGGGTTCGAGC 60.460 55.000 0.00 0.00 40.11 5.03
5100 5727 2.806244 CGCAGCAGTAAAGGTGTAAAGT 59.194 45.455 0.00 0.00 39.13 2.66
5808 6439 1.192428 GTGGTACCTCGGAAGGACAT 58.808 55.000 14.36 0.00 46.67 3.06
5920 6557 1.372582 ATTGTCGCTGCATGTGTAGG 58.627 50.000 0.00 0.00 0.00 3.18
5921 6558 4.598406 TTAATTGTCGCTGCATGTGTAG 57.402 40.909 0.00 0.00 0.00 2.74
5922 6559 6.293353 CCATATTAATTGTCGCTGCATGTGTA 60.293 38.462 0.00 0.00 0.00 2.90
5923 6560 5.506151 CCATATTAATTGTCGCTGCATGTGT 60.506 40.000 0.00 0.00 0.00 3.72
5924 6561 4.913345 CCATATTAATTGTCGCTGCATGTG 59.087 41.667 0.00 0.00 0.00 3.21
5925 6562 4.821260 TCCATATTAATTGTCGCTGCATGT 59.179 37.500 0.00 0.00 0.00 3.21
5926 6563 5.361135 TCCATATTAATTGTCGCTGCATG 57.639 39.130 0.00 0.00 0.00 4.06
5927 6564 5.163824 CGATCCATATTAATTGTCGCTGCAT 60.164 40.000 0.00 0.00 0.00 3.96
5928 6565 4.152223 CGATCCATATTAATTGTCGCTGCA 59.848 41.667 0.00 0.00 0.00 4.41
5929 6566 4.436050 CCGATCCATATTAATTGTCGCTGC 60.436 45.833 0.00 0.00 0.00 5.25
5930 6567 4.929211 TCCGATCCATATTAATTGTCGCTG 59.071 41.667 0.00 0.00 0.00 5.18
5931 6568 5.147330 TCCGATCCATATTAATTGTCGCT 57.853 39.130 0.00 0.00 0.00 4.93
6033 6670 3.752665 ACACTCAGAACCTTCGAGACTA 58.247 45.455 11.40 0.00 34.38 2.59
6166 6805 0.757561 TGTGTCACTCGGTCCCTCAA 60.758 55.000 4.27 0.00 0.00 3.02
6167 6806 1.152631 TGTGTCACTCGGTCCCTCA 60.153 57.895 4.27 0.00 0.00 3.86
6178 6817 0.249489 AGAGTTGCCGAGTGTGTCAC 60.249 55.000 0.00 0.00 34.10 3.67
6990 7631 1.619654 TCAGCCACTTGTCATTTGGG 58.380 50.000 3.10 0.00 0.00 4.12
7028 7669 4.330250 ACAAGGAACATGTGGATCTGAAG 58.670 43.478 0.00 0.00 39.47 3.02
7301 7942 2.601481 AGACTTTCGCGATTGCTTTG 57.399 45.000 10.88 0.00 39.65 2.77
7365 8006 1.742880 CCCCATCATAGCCATCGCG 60.743 63.158 0.00 0.00 41.18 5.87
7759 8400 7.716799 AAATATAAACTGAATGCAACCTCCA 57.283 32.000 0.00 0.00 0.00 3.86
7918 8569 7.977789 TGCGCTTCAAATATTTATCAGGATA 57.022 32.000 9.73 0.00 0.00 2.59
7968 8619 2.483013 GCACCATTGCTATACCAGACGA 60.483 50.000 0.00 0.00 46.17 4.20
8063 8725 1.751351 TCCTCAGCTGATCGTTCGATT 59.249 47.619 18.63 0.00 0.00 3.34
8087 8749 2.736721 CGTCATTACACACAAGTCCAGG 59.263 50.000 0.00 0.00 0.00 4.45
8110 8772 2.886523 TGCAGAAAACCCTCAATGAGTG 59.113 45.455 9.63 0.00 0.00 3.51
8115 8777 4.039124 ACGAATTTGCAGAAAACCCTCAAT 59.961 37.500 0.00 0.00 0.00 2.57
8119 8781 2.693074 ACACGAATTTGCAGAAAACCCT 59.307 40.909 0.00 0.00 0.00 4.34
8140 8802 0.827925 ACGGTCACAAGGAGAGCTCA 60.828 55.000 17.77 0.00 0.00 4.26
8150 8812 1.191535 CCTAGATCCCACGGTCACAA 58.808 55.000 0.00 0.00 0.00 3.33
8152 8814 0.396695 TCCCTAGATCCCACGGTCAC 60.397 60.000 0.00 0.00 0.00 3.67
8156 8818 1.497161 AAGTTCCCTAGATCCCACGG 58.503 55.000 0.00 0.00 0.00 4.94
8157 8819 2.500098 TCAAAGTTCCCTAGATCCCACG 59.500 50.000 0.00 0.00 0.00 4.94
8186 8848 8.908786 TCACCTAATAAATCATCTTCATCACC 57.091 34.615 0.00 0.00 0.00 4.02
8203 8865 8.321353 TCAACAAGTAACTCATCATCACCTAAT 58.679 33.333 0.00 0.00 0.00 1.73
8232 8894 8.429493 TTCATCATAGTTTTCATCACTAGCAG 57.571 34.615 0.00 0.00 30.19 4.24
8447 9109 8.080417 CCGAAGATCATCATTGATTGCTTTTAT 58.920 33.333 0.00 0.00 42.73 1.40
8505 9170 3.937814 TGTGGCATGTAAGTAGACAAGG 58.062 45.455 0.00 0.00 31.83 3.61
8598 9263 6.682746 TCAAGAGAACTACTAGAAGCAACAG 58.317 40.000 0.00 0.00 0.00 3.16
8741 9406 0.874390 TGCCTTTCTTGCTTGCGTAG 59.126 50.000 0.00 0.00 0.00 3.51
8754 9419 2.162681 CTTGATTCTTCCGGTGCCTTT 58.837 47.619 0.00 0.00 0.00 3.11
8803 9469 3.261897 TCTTCTTCCCACTCAACTCCATC 59.738 47.826 0.00 0.00 0.00 3.51
8832 9498 4.080582 TGAGAAACAAACTCTGTCTTGGGA 60.081 41.667 0.00 0.00 37.23 4.37
8908 9574 1.676006 CTTGTGGTCTTGTGGTGGAAC 59.324 52.381 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.