Multiple sequence alignment - TraesCS3B01G296900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G296900 chr3B 100.000 6113 0 0 1 6113 476036043 476042155 0.000000e+00 11289.0
1 TraesCS3B01G296900 chr3B 93.567 171 5 1 3955 4119 655849419 655849589 3.660000e-62 250.0
2 TraesCS3B01G296900 chr3B 76.386 415 55 33 2822 3223 173116824 173116440 3.760000e-42 183.0
3 TraesCS3B01G296900 chr3B 89.720 107 11 0 2684 2790 27179686 27179580 2.970000e-28 137.0
4 TraesCS3B01G296900 chr3D 90.978 2649 110 48 1 2596 365525986 365528558 0.000000e+00 3448.0
5 TraesCS3B01G296900 chr3D 93.312 1884 76 16 4258 6108 365532191 365534057 0.000000e+00 2736.0
6 TraesCS3B01G296900 chr3D 89.394 660 38 16 3314 3958 365529144 365529786 0.000000e+00 802.0
7 TraesCS3B01G296900 chr3D 84.160 625 50 21 2695 3287 365528558 365529165 1.490000e-155 560.0
8 TraesCS3B01G296900 chr3D 84.024 169 3 8 4123 4269 365531886 365532052 2.300000e-29 141.0
9 TraesCS3B01G296900 chr3A 94.622 1878 63 13 4268 6113 487447260 487449131 0.000000e+00 2874.0
10 TraesCS3B01G296900 chr3A 92.835 1633 71 21 996 2598 487444091 487445707 0.000000e+00 2326.0
11 TraesCS3B01G296900 chr3A 92.328 756 31 11 267 1010 487443313 487444053 0.000000e+00 1050.0
12 TraesCS3B01G296900 chr3A 89.339 666 45 10 3291 3952 487446306 487446949 0.000000e+00 813.0
13 TraesCS3B01G296900 chr3A 86.031 587 38 15 2681 3224 487445706 487446291 1.900000e-164 590.0
14 TraesCS3B01G296900 chr3A 91.710 193 14 2 1 193 487443095 487443285 3.630000e-67 267.0
15 TraesCS3B01G296900 chr3A 85.876 177 4 6 4114 4269 487446954 487447130 1.050000e-37 169.0
16 TraesCS3B01G296900 chr5A 93.296 179 4 3 3957 4128 290391697 290391874 2.190000e-64 257.0
17 TraesCS3B01G296900 chr5A 95.652 92 2 2 2596 2687 362170894 362170805 4.940000e-31 147.0
18 TraesCS3B01G296900 chr7A 93.605 172 5 1 3956 4121 320981338 320981167 1.020000e-62 252.0
19 TraesCS3B01G296900 chr2B 93.103 174 6 1 3948 4115 719520678 719520505 3.660000e-62 250.0
20 TraesCS3B01G296900 chr2B 93.529 170 6 1 3956 4120 13348253 13348422 1.320000e-61 248.0
21 TraesCS3B01G296900 chr2B 93.878 98 3 3 2587 2682 228983453 228983357 1.780000e-30 145.0
22 TraesCS3B01G296900 chr4A 92.655 177 6 2 3949 4118 362067903 362068079 1.320000e-61 248.0
23 TraesCS3B01G296900 chr4A 91.935 124 8 2 2681 2802 659461061 659461184 8.150000e-39 172.0
24 TraesCS3B01G296900 chr4A 94.505 91 4 1 2592 2682 696211505 696211594 8.260000e-29 139.0
25 TraesCS3B01G296900 chr2D 92.135 178 8 2 3953 4124 316334116 316333939 4.730000e-61 246.0
26 TraesCS3B01G296900 chr2D 91.935 124 8 2 2681 2802 486336686 486336809 8.150000e-39 172.0
27 TraesCS3B01G296900 chr5D 92.090 177 8 1 3957 4127 274578176 274578000 1.700000e-60 244.0
28 TraesCS3B01G296900 chr5D 97.753 89 1 1 2594 2682 381563830 381563917 1.060000e-32 152.0
29 TraesCS3B01G296900 chr5D 94.681 94 4 1 2589 2682 366675529 366675621 1.780000e-30 145.0
30 TraesCS3B01G296900 chr5D 93.407 91 5 1 2597 2687 458893930 458893841 3.840000e-27 134.0
31 TraesCS3B01G296900 chr5D 89.524 105 8 3 2590 2692 206601254 206601357 4.970000e-26 130.0
32 TraesCS3B01G296900 chr5B 92.135 178 7 3 3957 4128 439383945 439383769 1.700000e-60 244.0
33 TraesCS3B01G296900 chr5B 94.318 88 4 1 2597 2684 689103478 689103392 3.840000e-27 134.0
34 TraesCS3B01G296900 chr1B 90.323 124 10 2 2681 2802 597104031 597103908 1.760000e-35 161.0
35 TraesCS3B01G296900 chr2A 90.083 121 10 2 2684 2802 308113004 308112884 8.200000e-34 156.0
36 TraesCS3B01G296900 chr6B 90.654 107 10 0 2684 2790 688768837 688768731 6.390000e-30 143.0
37 TraesCS3B01G296900 chr6B 97.059 34 1 0 3086 3119 172992497 172992530 2.380000e-04 58.4
38 TraesCS3B01G296900 chr6D 92.391 92 6 1 2596 2687 144745113 144745023 4.970000e-26 130.0
39 TraesCS3B01G296900 chr6A 89.109 101 11 0 2681 2781 593681137 593681237 6.430000e-25 126.0
40 TraesCS3B01G296900 chr6A 97.143 35 1 0 3086 3120 109114946 109114980 6.620000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G296900 chr3B 476036043 476042155 6112 False 11289.000000 11289 100.000000 1 6113 1 chr3B.!!$F1 6112
1 TraesCS3B01G296900 chr3D 365525986 365534057 8071 False 1537.400000 3448 88.373600 1 6108 5 chr3D.!!$F1 6107
2 TraesCS3B01G296900 chr3A 487443095 487449131 6036 False 1155.571429 2874 90.391571 1 6113 7 chr3A.!!$F1 6112

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
844 875 0.338120 CCTCTCCTTCTCCCTGACCT 59.662 60.0 0.00 0.0 0.00 3.85 F
1182 1280 0.034767 TTCTCATCCAAGCCCAGCAG 60.035 55.0 0.00 0.0 0.00 4.24 F
2686 2855 0.033306 GGGACGGAGGGAGTAGTCTT 60.033 60.0 0.00 0.0 34.34 3.01 F
3178 3396 0.036732 AAACTGATTCAGCCGAGGCA 59.963 50.0 17.18 0.0 44.88 4.75 F
3968 4224 0.113776 TCACACCTACTCCCTCGGTT 59.886 55.0 0.00 0.0 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2667 2836 0.033306 AAGACTACTCCCTCCGTCCC 60.033 60.000 0.00 0.00 0.00 4.46 R
2951 3145 0.886043 TTGCTCGCTGATGTTGCTGT 60.886 50.000 0.00 0.00 0.00 4.40 R
3549 3793 0.102300 CGATATGGCTGACACGGTCA 59.898 55.000 6.57 6.57 40.50 4.02 R
4913 7433 0.809385 CCTGAACAGAATGCTGCCAG 59.191 55.000 14.01 14.01 46.26 4.85 R
5377 7920 2.158696 CCTTAGAGAAATCTGCAGGGGG 60.159 54.545 15.13 0.00 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 6.243148 AGTCCACCCTTTGTTCGTAAATATT 58.757 36.000 0.00 0.00 0.00 1.28
77 78 8.403236 ACCCTTTGTTCGTAAATATTAAGATGC 58.597 33.333 0.00 0.00 0.00 3.91
160 161 9.696917 CTTTGCTTGAATTACAGGAGTATTTTT 57.303 29.630 0.00 0.00 0.00 1.94
202 203 4.833380 AGTATACCATGTCTGAAGCCGTAT 59.167 41.667 0.00 0.00 0.00 3.06
209 210 2.159240 TGTCTGAAGCCGTATGTAGCAG 60.159 50.000 0.00 0.00 0.00 4.24
252 254 5.043189 GCTTTAGCAACCTTGATTAACGT 57.957 39.130 0.00 0.00 41.59 3.99
253 255 6.173191 GCTTTAGCAACCTTGATTAACGTA 57.827 37.500 0.00 0.00 41.59 3.57
254 256 6.604930 GCTTTAGCAACCTTGATTAACGTAA 58.395 36.000 0.00 0.00 41.59 3.18
255 257 7.248437 GCTTTAGCAACCTTGATTAACGTAAT 58.752 34.615 0.00 0.00 41.59 1.89
256 258 8.392612 GCTTTAGCAACCTTGATTAACGTAATA 58.607 33.333 0.00 0.00 41.59 0.98
259 261 7.259290 AGCAACCTTGATTAACGTAATATGG 57.741 36.000 0.00 0.00 0.00 2.74
260 262 6.826741 AGCAACCTTGATTAACGTAATATGGT 59.173 34.615 0.00 0.00 31.19 3.55
261 263 7.338449 AGCAACCTTGATTAACGTAATATGGTT 59.662 33.333 0.00 0.00 36.46 3.67
262 264 8.614346 GCAACCTTGATTAACGTAATATGGTTA 58.386 33.333 0.00 0.00 35.40 2.85
265 267 8.833493 ACCTTGATTAACGTAATATGGTTAAGC 58.167 33.333 12.18 12.18 42.34 3.09
266 268 9.052759 CCTTGATTAACGTAATATGGTTAAGCT 57.947 33.333 16.64 0.00 42.43 3.74
312 314 1.303091 TTCATCGCTCGGTGTCTCGA 61.303 55.000 2.29 0.00 37.60 4.04
322 324 2.106938 TGTCTCGATGATGCCGGC 59.893 61.111 22.73 22.73 0.00 6.13
561 565 2.024846 CACCTCCTCCTCTAGGTTCTCA 60.025 54.545 0.00 0.00 43.77 3.27
633 637 1.821936 CATCTGCGCCTCCTCTTCT 59.178 57.895 4.18 0.00 0.00 2.85
742 746 2.607750 ACCGGAGATGCCACCAGT 60.608 61.111 9.46 0.00 35.94 4.00
830 861 1.143277 TGTCCCGATCCTACTCCTCTC 59.857 57.143 0.00 0.00 0.00 3.20
841 872 1.388174 ACTCCTCTCCTTCTCCCTGA 58.612 55.000 0.00 0.00 0.00 3.86
844 875 0.338120 CCTCTCCTTCTCCCTGACCT 59.662 60.000 0.00 0.00 0.00 3.85
907 938 1.447945 GAGCTGGGCTTTGAGTCTTC 58.552 55.000 0.00 0.00 39.88 2.87
962 1001 0.472471 CCCAAGCCCTATCGCCTTTA 59.528 55.000 0.00 0.00 0.00 1.85
988 1027 3.004951 CCCAGCCCAAGCATCTCT 58.995 61.111 0.00 0.00 43.56 3.10
993 1032 1.070445 CAGCCCAAGCATCTCTCTAGG 59.930 57.143 0.00 0.00 43.56 3.02
1025 1120 1.780919 ACAAAGAGTAAACCCAGCCCT 59.219 47.619 0.00 0.00 0.00 5.19
1147 1245 2.490685 GGCTTCTCCTCCGACGAC 59.509 66.667 0.00 0.00 0.00 4.34
1166 1264 2.234296 CCCCAACCTGCCTCCTTCT 61.234 63.158 0.00 0.00 0.00 2.85
1182 1280 0.034767 TTCTCATCCAAGCCCAGCAG 60.035 55.000 0.00 0.00 0.00 4.24
1417 1515 2.947785 AGGTCGAGGGAGAGGGGT 60.948 66.667 0.00 0.00 0.00 4.95
1498 1596 0.879400 GCAGGATCTCACATGCCGAG 60.879 60.000 6.43 6.43 40.88 4.63
1597 1695 0.179056 CGGATGGCGGTAAAGTGGAT 60.179 55.000 0.00 0.00 0.00 3.41
1600 1698 3.751518 GGATGGCGGTAAAGTGGATTAT 58.248 45.455 0.00 0.00 0.00 1.28
1627 1725 5.080337 AGGCTCATTGAAGGATACGATAGA 58.920 41.667 0.00 0.00 46.39 1.98
1665 1763 6.228258 TCTTTCAATTACTGCCTCGTAACTT 58.772 36.000 0.00 0.00 32.67 2.66
1666 1764 7.380536 TCTTTCAATTACTGCCTCGTAACTTA 58.619 34.615 0.00 0.00 32.67 2.24
1667 1765 7.874016 TCTTTCAATTACTGCCTCGTAACTTAA 59.126 33.333 0.00 0.00 32.67 1.85
1668 1766 8.556213 TTTCAATTACTGCCTCGTAACTTAAT 57.444 30.769 0.00 0.00 32.67 1.40
1669 1767 9.656040 TTTCAATTACTGCCTCGTAACTTAATA 57.344 29.630 0.00 0.00 32.67 0.98
1670 1768 8.638685 TCAATTACTGCCTCGTAACTTAATAC 57.361 34.615 0.00 0.00 32.67 1.89
1672 1770 9.740239 CAATTACTGCCTCGTAACTTAATACTA 57.260 33.333 0.00 0.00 32.67 1.82
1673 1771 9.741647 AATTACTGCCTCGTAACTTAATACTAC 57.258 33.333 0.00 0.00 32.67 2.73
1676 1774 6.376581 ACTGCCTCGTAACTTAATACTACTGT 59.623 38.462 0.00 0.00 0.00 3.55
1677 1775 6.558009 TGCCTCGTAACTTAATACTACTGTG 58.442 40.000 0.00 0.00 0.00 3.66
1678 1776 5.458126 GCCTCGTAACTTAATACTACTGTGC 59.542 44.000 0.00 0.00 0.00 4.57
1679 1777 6.558009 CCTCGTAACTTAATACTACTGTGCA 58.442 40.000 0.00 0.00 0.00 4.57
1701 1802 7.225734 GTGCAATTGTTTACCTGTGGTATTTTT 59.774 33.333 7.40 0.00 38.05 1.94
1853 1958 2.159240 CCAATAGAGCGAGTACAGTGCA 60.159 50.000 0.00 0.00 0.00 4.57
1963 2079 7.898014 GGAAACCCCTTTGTTATATTCATCT 57.102 36.000 0.00 0.00 0.00 2.90
1964 2080 8.990163 GGAAACCCCTTTGTTATATTCATCTA 57.010 34.615 0.00 0.00 0.00 1.98
1965 2081 9.067986 GGAAACCCCTTTGTTATATTCATCTAG 57.932 37.037 0.00 0.00 0.00 2.43
1997 2113 1.798223 TCAGCGCACACACAGTTATTC 59.202 47.619 11.47 0.00 0.00 1.75
2106 2224 1.340114 GCTTCGAAGGATTCCACCCTT 60.340 52.381 25.77 0.00 43.81 3.95
2109 2227 0.394352 CGAAGGATTCCACCCTTGGG 60.394 60.000 5.29 3.77 43.81 4.12
2359 2479 5.059833 GGGTACTTGAATATGAAGCTCTGG 58.940 45.833 0.00 0.00 0.00 3.86
2360 2480 5.396884 GGGTACTTGAATATGAAGCTCTGGT 60.397 44.000 0.00 0.00 0.00 4.00
2361 2481 6.183360 GGGTACTTGAATATGAAGCTCTGGTA 60.183 42.308 0.00 0.00 0.00 3.25
2362 2482 6.926272 GGTACTTGAATATGAAGCTCTGGTAG 59.074 42.308 0.00 0.00 0.00 3.18
2363 2483 5.923204 ACTTGAATATGAAGCTCTGGTAGG 58.077 41.667 0.00 0.00 0.00 3.18
2364 2484 5.663106 ACTTGAATATGAAGCTCTGGTAGGA 59.337 40.000 0.00 0.00 0.00 2.94
2365 2485 5.798125 TGAATATGAAGCTCTGGTAGGAG 57.202 43.478 0.00 0.00 36.50 3.69
2423 2565 0.248012 TGAAGCACCGATAAGGCGAA 59.752 50.000 0.00 0.00 46.52 4.70
2426 2568 0.743345 AGCACCGATAAGGCGAAACC 60.743 55.000 0.00 0.00 46.52 3.27
2427 2569 2.003672 CACCGATAAGGCGAAACCG 58.996 57.895 0.00 0.00 46.52 4.44
2428 2570 0.458889 CACCGATAAGGCGAAACCGA 60.459 55.000 0.00 0.00 46.52 4.69
2429 2571 0.462789 ACCGATAAGGCGAAACCGAT 59.537 50.000 0.00 0.00 46.52 4.18
2430 2572 1.682854 ACCGATAAGGCGAAACCGATA 59.317 47.619 0.00 0.00 46.52 2.92
2431 2573 2.056577 CCGATAAGGCGAAACCGATAC 58.943 52.381 0.00 0.00 46.52 2.24
2432 2574 1.712350 CGATAAGGCGAAACCGATACG 59.288 52.381 0.00 0.00 46.52 3.06
2460 2602 5.300752 CACAGGATACGGCAATTTCTAGAT 58.699 41.667 0.00 0.00 46.39 1.98
2469 2611 5.008019 ACGGCAATTTCTAGATACAGCAATG 59.992 40.000 0.00 0.00 0.00 2.82
2554 2709 4.872124 TGTGAGATGAGATCAAAATGTCGG 59.128 41.667 0.00 0.00 0.00 4.79
2558 2713 1.025041 GAGATCAAAATGTCGGCCCC 58.975 55.000 0.00 0.00 0.00 5.80
2577 2732 0.529378 CTTGGTTGCCTGATTGCCTC 59.471 55.000 0.00 0.00 0.00 4.70
2580 2735 1.318158 GGTTGCCTGATTGCCTCCAG 61.318 60.000 0.00 0.00 0.00 3.86
2596 2765 3.499382 CCTCCAGGCCTCTTTTCTTTTCT 60.499 47.826 0.00 0.00 0.00 2.52
2597 2766 4.263506 CCTCCAGGCCTCTTTTCTTTTCTA 60.264 45.833 0.00 0.00 0.00 2.10
2598 2767 4.652822 TCCAGGCCTCTTTTCTTTTCTAC 58.347 43.478 0.00 0.00 0.00 2.59
2599 2768 4.351111 TCCAGGCCTCTTTTCTTTTCTACT 59.649 41.667 0.00 0.00 0.00 2.57
2600 2769 4.697828 CCAGGCCTCTTTTCTTTTCTACTC 59.302 45.833 0.00 0.00 0.00 2.59
2601 2770 4.697828 CAGGCCTCTTTTCTTTTCTACTCC 59.302 45.833 0.00 0.00 0.00 3.85
2602 2771 4.011023 GGCCTCTTTTCTTTTCTACTCCC 58.989 47.826 0.00 0.00 0.00 4.30
2603 2772 4.263550 GGCCTCTTTTCTTTTCTACTCCCT 60.264 45.833 0.00 0.00 0.00 4.20
2604 2773 4.938832 GCCTCTTTTCTTTTCTACTCCCTC 59.061 45.833 0.00 0.00 0.00 4.30
2605 2774 5.280266 GCCTCTTTTCTTTTCTACTCCCTCT 60.280 44.000 0.00 0.00 0.00 3.69
2606 2775 6.169800 CCTCTTTTCTTTTCTACTCCCTCTG 58.830 44.000 0.00 0.00 0.00 3.35
2607 2776 6.239743 CCTCTTTTCTTTTCTACTCCCTCTGT 60.240 42.308 0.00 0.00 0.00 3.41
2608 2777 6.760291 TCTTTTCTTTTCTACTCCCTCTGTC 58.240 40.000 0.00 0.00 0.00 3.51
2609 2778 5.485209 TTTCTTTTCTACTCCCTCTGTCC 57.515 43.478 0.00 0.00 0.00 4.02
2610 2779 3.442076 TCTTTTCTACTCCCTCTGTCCC 58.558 50.000 0.00 0.00 0.00 4.46
2611 2780 3.173965 CTTTTCTACTCCCTCTGTCCCA 58.826 50.000 0.00 0.00 0.00 4.37
2612 2781 3.269592 TTTCTACTCCCTCTGTCCCAA 57.730 47.619 0.00 0.00 0.00 4.12
2613 2782 3.269592 TTCTACTCCCTCTGTCCCAAA 57.730 47.619 0.00 0.00 0.00 3.28
2614 2783 3.269592 TCTACTCCCTCTGTCCCAAAA 57.730 47.619 0.00 0.00 0.00 2.44
2615 2784 3.593942 TCTACTCCCTCTGTCCCAAAAA 58.406 45.455 0.00 0.00 0.00 1.94
2616 2785 4.175962 TCTACTCCCTCTGTCCCAAAAAT 58.824 43.478 0.00 0.00 0.00 1.82
2617 2786 5.347124 TCTACTCCCTCTGTCCCAAAAATA 58.653 41.667 0.00 0.00 0.00 1.40
2618 2787 5.970640 TCTACTCCCTCTGTCCCAAAAATAT 59.029 40.000 0.00 0.00 0.00 1.28
2619 2788 7.136885 TCTACTCCCTCTGTCCCAAAAATATA 58.863 38.462 0.00 0.00 0.00 0.86
2620 2789 6.652205 ACTCCCTCTGTCCCAAAAATATAA 57.348 37.500 0.00 0.00 0.00 0.98
2621 2790 6.663734 ACTCCCTCTGTCCCAAAAATATAAG 58.336 40.000 0.00 0.00 0.00 1.73
2622 2791 6.447084 ACTCCCTCTGTCCCAAAAATATAAGA 59.553 38.462 0.00 0.00 0.00 2.10
2623 2792 7.036863 ACTCCCTCTGTCCCAAAAATATAAGAA 60.037 37.037 0.00 0.00 0.00 2.52
2624 2793 7.116736 TCCCTCTGTCCCAAAAATATAAGAAC 58.883 38.462 0.00 0.00 0.00 3.01
2625 2794 6.038271 CCCTCTGTCCCAAAAATATAAGAACG 59.962 42.308 0.00 0.00 0.00 3.95
2626 2795 6.598064 CCTCTGTCCCAAAAATATAAGAACGT 59.402 38.462 0.00 0.00 0.00 3.99
2627 2796 7.120726 CCTCTGTCCCAAAAATATAAGAACGTT 59.879 37.037 0.00 0.00 0.00 3.99
2628 2797 8.398878 TCTGTCCCAAAAATATAAGAACGTTT 57.601 30.769 0.46 0.00 0.00 3.60
2629 2798 8.852135 TCTGTCCCAAAAATATAAGAACGTTTT 58.148 29.630 0.46 0.00 0.00 2.43
2630 2799 9.471084 CTGTCCCAAAAATATAAGAACGTTTTT 57.529 29.630 9.22 9.22 34.98 1.94
2671 2840 9.634163 ATCAAAAACGTTCTTATATTTTGGGAC 57.366 29.630 15.53 0.00 39.94 4.46
2672 2841 7.804129 TCAAAAACGTTCTTATATTTTGGGACG 59.196 33.333 15.53 0.00 39.94 4.79
2673 2842 5.806366 AACGTTCTTATATTTTGGGACGG 57.194 39.130 0.00 0.00 0.00 4.79
2674 2843 5.088680 ACGTTCTTATATTTTGGGACGGA 57.911 39.130 0.00 0.00 0.00 4.69
2675 2844 5.114081 ACGTTCTTATATTTTGGGACGGAG 58.886 41.667 0.00 0.00 0.00 4.63
2676 2845 4.510340 CGTTCTTATATTTTGGGACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
2677 2846 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
2678 2847 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
2679 2848 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
2680 2849 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2681 2850 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2682 2851 1.272807 TTTTGGGACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
2683 2852 0.115745 TTTGGGACGGAGGGAGTAGT 59.884 55.000 0.00 0.00 0.00 2.73
2684 2853 0.324091 TTGGGACGGAGGGAGTAGTC 60.324 60.000 0.00 0.00 0.00 2.59
2685 2854 1.212934 TGGGACGGAGGGAGTAGTCT 61.213 60.000 0.00 0.00 34.34 3.24
2686 2855 0.033306 GGGACGGAGGGAGTAGTCTT 60.033 60.000 0.00 0.00 34.34 3.01
2687 2856 1.391577 GGACGGAGGGAGTAGTCTTC 58.608 60.000 0.00 0.00 34.34 2.87
2688 2857 1.340795 GGACGGAGGGAGTAGTCTTCA 60.341 57.143 0.00 0.00 34.34 3.02
2689 2858 2.444421 GACGGAGGGAGTAGTCTTCAA 58.556 52.381 0.00 0.00 0.00 2.69
2690 2859 3.025262 GACGGAGGGAGTAGTCTTCAAT 58.975 50.000 0.00 0.00 0.00 2.57
2691 2860 2.761208 ACGGAGGGAGTAGTCTTCAATG 59.239 50.000 0.00 0.00 0.00 2.82
2692 2861 3.024547 CGGAGGGAGTAGTCTTCAATGA 58.975 50.000 0.00 0.00 0.00 2.57
2693 2862 3.181485 CGGAGGGAGTAGTCTTCAATGAC 60.181 52.174 0.00 0.00 37.23 3.06
2694 2863 3.133183 GGAGGGAGTAGTCTTCAATGACC 59.867 52.174 0.00 0.00 37.66 4.02
2936 3130 2.227149 CAGCAACATCAGCAAGCTGTAA 59.773 45.455 20.34 4.01 45.57 2.41
2951 3145 2.416747 CTGTAAGCAGTAGCAGCAACA 58.583 47.619 0.00 0.00 45.49 3.33
2978 3172 0.723414 ATCAGCGAGCAACGTCAATG 59.277 50.000 0.00 0.00 44.60 2.82
2991 3185 7.265673 AGCAACGTCAATGTACATATTCTACT 58.734 34.615 9.21 0.00 0.00 2.57
3001 3195 5.596772 TGTACATATTCTACTAGCAGCCACA 59.403 40.000 0.00 0.00 0.00 4.17
3015 3209 4.034258 CACAAGCCAGCCACGCAG 62.034 66.667 0.00 0.00 0.00 5.18
3069 3287 6.710744 ACAACTAACAAGCAGTAGCAAGTAAT 59.289 34.615 0.00 0.00 45.49 1.89
3074 3292 9.967346 CTAACAAGCAGTAGCAAGTAATAGATA 57.033 33.333 0.00 0.00 45.49 1.98
3163 3381 1.668151 GGCGGCGACAGAGAAAACT 60.668 57.895 12.98 0.00 0.00 2.66
3171 3389 3.424170 GCGACAGAGAAAACTGATTCAGC 60.424 47.826 13.64 0.00 40.63 4.26
3178 3396 0.036732 AAACTGATTCAGCCGAGGCA 59.963 50.000 17.18 0.00 44.88 4.75
3181 3399 2.124983 GATTCAGCCGAGGCAGCA 60.125 61.111 17.18 0.00 44.88 4.41
3188 3406 2.124819 CCGAGGCAGCAGCTTGAT 60.125 61.111 0.00 0.00 41.70 2.57
3254 3494 3.760035 CCACTACAGGCGGCGAGT 61.760 66.667 12.98 13.90 0.00 4.18
3289 3529 0.388649 CGGTGAGGAAAGTCCAGACG 60.389 60.000 0.00 0.00 39.61 4.18
3309 3549 4.388499 GGCGGCGAGGAAAGTCCA 62.388 66.667 12.98 0.00 39.61 4.02
3310 3550 2.815647 GCGGCGAGGAAAGTCCAG 60.816 66.667 12.98 0.00 39.61 3.86
3311 3551 2.970639 CGGCGAGGAAAGTCCAGA 59.029 61.111 0.00 0.00 39.61 3.86
3312 3552 1.446272 CGGCGAGGAAAGTCCAGAC 60.446 63.158 0.00 0.00 39.61 3.51
3313 3553 1.446272 GGCGAGGAAAGTCCAGACG 60.446 63.158 0.00 1.34 39.61 4.18
3314 3554 1.446272 GCGAGGAAAGTCCAGACGG 60.446 63.158 0.00 0.00 39.61 4.79
3315 3555 1.446272 CGAGGAAAGTCCAGACGGC 60.446 63.158 0.00 0.00 39.61 5.68
3316 3556 1.446272 GAGGAAAGTCCAGACGGCG 60.446 63.158 4.80 4.80 39.61 6.46
3317 3557 2.434359 GGAAAGTCCAGACGGCGG 60.434 66.667 13.24 0.00 36.28 6.13
3318 3558 3.119096 GAAAGTCCAGACGGCGGC 61.119 66.667 13.24 8.92 36.20 6.53
3344 3584 4.767255 GAGTCCAGGCAGGTGGCG 62.767 72.222 0.00 0.00 46.16 5.69
3373 3613 2.187946 CTCATGTGCGTCTCCCCC 59.812 66.667 0.00 0.00 0.00 5.40
3394 3634 1.591158 GTCGTGCGAACAGAGTGAAAA 59.409 47.619 0.00 0.00 0.00 2.29
3400 3640 3.804325 TGCGAACAGAGTGAAAAAGAGAG 59.196 43.478 0.00 0.00 0.00 3.20
3401 3641 3.185391 GCGAACAGAGTGAAAAAGAGAGG 59.815 47.826 0.00 0.00 0.00 3.69
3440 3680 2.615986 TGGTACTGGGCTTCTACTGA 57.384 50.000 0.00 0.00 0.00 3.41
3442 3682 2.042569 TGGTACTGGGCTTCTACTGAGA 59.957 50.000 0.00 0.00 0.00 3.27
3457 3697 0.326927 TGAGATGGACGTTTTCCCCC 59.673 55.000 0.00 0.00 45.17 5.40
3488 3728 1.217244 GTGAACAGCCCGTATCGGT 59.783 57.895 7.40 0.00 46.80 4.69
3495 3735 1.135803 CAGCCCGTATCGGTGTTTTTG 60.136 52.381 7.40 0.00 46.80 2.44
3497 3737 0.875728 CCCGTATCGGTGTTTTTGCA 59.124 50.000 7.40 0.00 46.80 4.08
3556 3800 2.505498 GCAGCGTATCGTGACCGTG 61.505 63.158 0.00 0.00 35.01 4.94
3563 3807 1.245376 TATCGTGACCGTGTCAGCCA 61.245 55.000 6.94 0.00 43.57 4.75
3780 4028 1.134848 CACTCTGCTCTAGGAAGGCAC 60.135 57.143 0.00 0.00 32.33 5.01
3786 4034 2.320781 GCTCTAGGAAGGCACTATGGA 58.679 52.381 0.00 0.00 38.49 3.41
3792 4040 7.093289 GCTCTAGGAAGGCACTATGGATAATTA 60.093 40.741 0.00 0.00 38.49 1.40
3860 4108 3.341857 TCGGTTACAATTTGCACACAC 57.658 42.857 0.00 0.00 0.00 3.82
3956 4212 2.379907 AGAATGGGTTTGGATCACACCT 59.620 45.455 0.00 0.00 34.88 4.00
3957 4213 3.591527 AGAATGGGTTTGGATCACACCTA 59.408 43.478 0.00 0.00 34.88 3.08
3958 4214 2.871096 TGGGTTTGGATCACACCTAC 57.129 50.000 0.00 0.00 34.88 3.18
3959 4215 2.344592 TGGGTTTGGATCACACCTACT 58.655 47.619 0.00 0.00 34.88 2.57
3960 4216 2.304761 TGGGTTTGGATCACACCTACTC 59.695 50.000 0.00 0.00 34.88 2.59
3961 4217 2.355818 GGGTTTGGATCACACCTACTCC 60.356 54.545 0.00 0.00 34.88 3.85
3962 4218 2.355818 GGTTTGGATCACACCTACTCCC 60.356 54.545 0.00 0.00 32.09 4.30
3963 4219 2.572104 GTTTGGATCACACCTACTCCCT 59.428 50.000 0.00 0.00 0.00 4.20
3964 4220 2.160721 TGGATCACACCTACTCCCTC 57.839 55.000 0.00 0.00 0.00 4.30
3965 4221 1.033574 GGATCACACCTACTCCCTCG 58.966 60.000 0.00 0.00 0.00 4.63
3966 4222 1.033574 GATCACACCTACTCCCTCGG 58.966 60.000 0.00 0.00 0.00 4.63
3967 4223 0.335361 ATCACACCTACTCCCTCGGT 59.665 55.000 0.00 0.00 0.00 4.69
3968 4224 0.113776 TCACACCTACTCCCTCGGTT 59.886 55.000 0.00 0.00 0.00 4.44
3969 4225 0.531200 CACACCTACTCCCTCGGTTC 59.469 60.000 0.00 0.00 0.00 3.62
3970 4226 0.614134 ACACCTACTCCCTCGGTTCC 60.614 60.000 0.00 0.00 0.00 3.62
3971 4227 0.324460 CACCTACTCCCTCGGTTCCT 60.324 60.000 0.00 0.00 0.00 3.36
3972 4228 1.064166 CACCTACTCCCTCGGTTCCTA 60.064 57.143 0.00 0.00 0.00 2.94
3973 4229 1.642762 ACCTACTCCCTCGGTTCCTAA 59.357 52.381 0.00 0.00 0.00 2.69
3974 4230 2.043526 ACCTACTCCCTCGGTTCCTAAA 59.956 50.000 0.00 0.00 0.00 1.85
3975 4231 3.306613 CCTACTCCCTCGGTTCCTAAAT 58.693 50.000 0.00 0.00 0.00 1.40
3976 4232 4.078980 ACCTACTCCCTCGGTTCCTAAATA 60.079 45.833 0.00 0.00 0.00 1.40
3977 4233 5.085219 CCTACTCCCTCGGTTCCTAAATAT 58.915 45.833 0.00 0.00 0.00 1.28
3978 4234 5.543020 CCTACTCCCTCGGTTCCTAAATATT 59.457 44.000 0.00 0.00 0.00 1.28
3979 4235 5.970501 ACTCCCTCGGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3980 4236 6.323210 ACTCCCTCGGTTCCTAAATATTTT 57.677 37.500 5.91 0.00 0.00 1.82
3981 4237 6.728411 ACTCCCTCGGTTCCTAAATATTTTT 58.272 36.000 5.91 0.00 0.00 1.94
3982 4238 6.827251 ACTCCCTCGGTTCCTAAATATTTTTC 59.173 38.462 5.91 0.00 0.00 2.29
3983 4239 6.965607 TCCCTCGGTTCCTAAATATTTTTCT 58.034 36.000 5.91 0.00 0.00 2.52
3984 4240 7.407729 TCCCTCGGTTCCTAAATATTTTTCTT 58.592 34.615 5.91 0.00 0.00 2.52
3985 4241 7.891712 TCCCTCGGTTCCTAAATATTTTTCTTT 59.108 33.333 5.91 0.00 0.00 2.52
3986 4242 8.188799 CCCTCGGTTCCTAAATATTTTTCTTTC 58.811 37.037 5.91 0.00 0.00 2.62
3987 4243 8.957466 CCTCGGTTCCTAAATATTTTTCTTTCT 58.043 33.333 5.91 0.00 0.00 2.52
4005 4261 9.613428 TTTCTTTCTAGAGATTTCAACAAGTGA 57.387 29.630 0.00 0.00 0.00 3.41
4006 4262 8.594881 TCTTTCTAGAGATTTCAACAAGTGAC 57.405 34.615 0.00 0.00 35.39 3.67
4007 4263 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
4008 4264 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
4009 4265 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
4010 4266 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
4011 4267 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
4013 4269 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
4014 4270 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
4015 4271 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
4016 4272 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
4017 4273 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
4018 4274 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
4019 4275 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
4020 4276 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
4021 4277 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
4022 4278 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
4023 4279 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
4024 4280 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
4025 4281 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
4026 4282 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
4027 4283 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4028 4284 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4029 4285 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4030 4286 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4031 4287 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4032 4288 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4033 4289 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4034 4290 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4035 4291 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4036 4292 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4037 4293 5.122239 CGGAGCAAAATGAGTGAATCTACAA 59.878 40.000 0.00 0.00 0.00 2.41
4038 4294 6.348458 CGGAGCAAAATGAGTGAATCTACAAA 60.348 38.462 0.00 0.00 0.00 2.83
4039 4295 7.542025 GGAGCAAAATGAGTGAATCTACAAAT 58.458 34.615 0.00 0.00 0.00 2.32
4040 4296 8.677300 GGAGCAAAATGAGTGAATCTACAAATA 58.323 33.333 0.00 0.00 0.00 1.40
4043 4299 9.793252 GCAAAATGAGTGAATCTACAAATATGT 57.207 29.630 0.00 0.00 43.74 2.29
4064 4320 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
4066 4322 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
4067 4323 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
4068 4324 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
4069 4325 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
4070 4326 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
4071 4327 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
4072 4328 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
4073 4329 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
4074 4330 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
4075 4331 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
4076 4332 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
4077 4333 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
4078 4334 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
4079 4335 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
4080 4336 6.238374 CGTATGTGGTAGTCCATTTGAAATCC 60.238 42.308 0.00 0.00 46.20 3.01
4081 4337 4.340617 TGTGGTAGTCCATTTGAAATCCC 58.659 43.478 0.00 0.00 46.20 3.85
4082 4338 4.044065 TGTGGTAGTCCATTTGAAATCCCT 59.956 41.667 0.00 0.00 46.20 4.20
4083 4339 5.251932 TGTGGTAGTCCATTTGAAATCCCTA 59.748 40.000 0.00 0.00 46.20 3.53
4084 4340 6.184789 GTGGTAGTCCATTTGAAATCCCTAA 58.815 40.000 0.00 0.00 46.20 2.69
4085 4341 6.661805 GTGGTAGTCCATTTGAAATCCCTAAA 59.338 38.462 0.00 0.00 46.20 1.85
4086 4342 7.177744 GTGGTAGTCCATTTGAAATCCCTAAAA 59.822 37.037 0.00 0.00 46.20 1.52
4087 4343 7.730784 TGGTAGTCCATTTGAAATCCCTAAAAA 59.269 33.333 0.00 0.00 39.03 1.94
4088 4344 8.251026 GGTAGTCCATTTGAAATCCCTAAAAAG 58.749 37.037 0.00 0.00 0.00 2.27
4089 4345 9.020731 GTAGTCCATTTGAAATCCCTAAAAAGA 57.979 33.333 0.00 0.00 0.00 2.52
4090 4346 7.896811 AGTCCATTTGAAATCCCTAAAAAGAC 58.103 34.615 0.00 0.00 0.00 3.01
4091 4347 7.508977 AGTCCATTTGAAATCCCTAAAAAGACA 59.491 33.333 0.00 0.00 0.00 3.41
4092 4348 8.147704 GTCCATTTGAAATCCCTAAAAAGACAA 58.852 33.333 0.00 0.00 0.00 3.18
4093 4349 8.709308 TCCATTTGAAATCCCTAAAAAGACAAA 58.291 29.630 0.00 0.00 0.00 2.83
4094 4350 9.506018 CCATTTGAAATCCCTAAAAAGACAAAT 57.494 29.630 0.00 0.00 36.38 2.32
4110 4366 8.595362 AAAGACAAATATTTAGGAAAGGAGGG 57.405 34.615 0.00 0.00 0.00 4.30
4111 4367 7.525158 AGACAAATATTTAGGAAAGGAGGGA 57.475 36.000 0.00 0.00 0.00 4.20
4112 4368 7.578203 AGACAAATATTTAGGAAAGGAGGGAG 58.422 38.462 0.00 0.00 0.00 4.30
4196 6543 5.221722 TGGAGCACCCAGAATATGAGAATAC 60.222 44.000 0.00 0.00 40.82 1.89
4295 6813 6.347079 GGCATGTCAAAATTTGTTGTCTGATG 60.347 38.462 5.56 1.33 0.00 3.07
4306 6824 8.821686 ATTTGTTGTCTGATGACCCATAATTA 57.178 30.769 0.00 0.00 42.28 1.40
4307 6825 8.642935 TTTGTTGTCTGATGACCCATAATTAA 57.357 30.769 0.00 0.00 42.28 1.40
4354 6873 4.123497 TGCTAATGATGACGCTACACTT 57.877 40.909 0.00 0.00 0.00 3.16
4471 6990 1.142262 ACTTGTTCCTAACCAGCCGTT 59.858 47.619 0.00 0.00 38.57 4.44
4473 6992 1.886886 TGTTCCTAACCAGCCGTTTC 58.113 50.000 0.00 0.00 35.79 2.78
4486 7005 3.248602 CAGCCGTTTCTTGTATATGCCTC 59.751 47.826 0.00 0.00 0.00 4.70
4489 7008 3.489785 CCGTTTCTTGTATATGCCTCGTC 59.510 47.826 0.00 0.00 0.00 4.20
4518 7037 6.537660 TGCATGTCATAGTCAAAGAATGAGAG 59.462 38.462 0.00 0.00 39.19 3.20
4570 7089 5.554437 TGTTTGGTGTACCTATGTCTTCA 57.446 39.130 2.32 0.00 36.82 3.02
4850 7370 5.126396 AGTCCTTGCTAAAAATGCTGAAC 57.874 39.130 0.00 0.00 0.00 3.18
4863 7383 7.744087 AAAATGCTGAACACTGTATACTTCA 57.256 32.000 4.17 4.94 0.00 3.02
4924 7444 3.441572 AGTTGTAACATCTGGCAGCATTC 59.558 43.478 10.34 0.00 0.00 2.67
5027 7557 9.391006 TGTGATTCTAAATAGGTGAATGGTTAC 57.609 33.333 0.00 0.00 31.49 2.50
5146 7685 1.067295 TGTCACCCCTCATTGCTTCT 58.933 50.000 0.00 0.00 0.00 2.85
5163 7702 4.099419 TGCTTCTACTGTCAGTCTGTGAAA 59.901 41.667 9.26 0.00 36.74 2.69
5168 7707 5.831525 TCTACTGTCAGTCTGTGAAACCTAA 59.168 40.000 9.26 0.00 36.74 2.69
5204 7743 7.381408 CCAAATCATGATTGAATTCTCGAATGG 59.619 37.037 21.39 15.43 34.96 3.16
5377 7920 8.153479 ACAAAAATTAAGACCATCTTTTTGCC 57.847 30.769 15.65 0.00 44.58 4.52
5751 8311 7.318141 AGAATAGTATTTCGTTTTCGTCTCCA 58.682 34.615 0.00 0.00 44.46 3.86
5913 8473 3.199727 TGGCAATAGCTTCCATGAGTACA 59.800 43.478 0.00 0.00 41.70 2.90
5914 8474 4.141413 TGGCAATAGCTTCCATGAGTACAT 60.141 41.667 0.00 0.00 41.70 2.29
5915 8475 4.823989 GGCAATAGCTTCCATGAGTACATT 59.176 41.667 0.00 0.00 41.70 2.71
5916 8476 5.997746 GGCAATAGCTTCCATGAGTACATTA 59.002 40.000 0.00 0.00 41.70 1.90
5948 8512 7.939039 AGAATCAGAAAACTCACCTTGTTATGA 59.061 33.333 0.00 0.00 0.00 2.15
5990 8554 0.613292 ATGTCAGCCAGGACTCGTCT 60.613 55.000 0.00 0.00 38.61 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 6.940298 AGCAAAGTAATACCTCTGTTGCTAAA 59.060 34.615 6.22 0.00 46.07 1.85
120 121 6.801539 TCAAGCAAAGTAATACCTCTGTTG 57.198 37.500 0.00 0.00 0.00 3.33
131 132 9.515226 AATACTCCTGTAATTCAAGCAAAGTAA 57.485 29.630 0.00 0.00 31.80 2.24
202 203 4.465305 GGAAGAGTTTAGGTACCTGCTACA 59.535 45.833 25.33 0.00 0.00 2.74
209 210 4.223255 AGCAAGAGGAAGAGTTTAGGTACC 59.777 45.833 2.73 2.73 0.00 3.34
240 242 9.052759 AGCTTAACCATATTACGTTAATCAAGG 57.947 33.333 0.00 0.00 34.76 3.61
256 258 8.793592 CCTTGTTCTTTTAGTTAGCTTAACCAT 58.206 33.333 0.00 0.00 39.47 3.55
257 259 7.229907 CCCTTGTTCTTTTAGTTAGCTTAACCA 59.770 37.037 0.00 0.00 39.47 3.67
258 260 7.591165 CCCTTGTTCTTTTAGTTAGCTTAACC 58.409 38.462 0.00 0.00 39.47 2.85
259 261 7.082602 GCCCTTGTTCTTTTAGTTAGCTTAAC 58.917 38.462 0.00 0.00 38.94 2.01
260 262 6.208007 GGCCCTTGTTCTTTTAGTTAGCTTAA 59.792 38.462 0.00 0.00 0.00 1.85
261 263 5.708697 GGCCCTTGTTCTTTTAGTTAGCTTA 59.291 40.000 0.00 0.00 0.00 3.09
262 264 4.523173 GGCCCTTGTTCTTTTAGTTAGCTT 59.477 41.667 0.00 0.00 0.00 3.74
263 265 4.079970 GGCCCTTGTTCTTTTAGTTAGCT 58.920 43.478 0.00 0.00 0.00 3.32
264 266 3.119955 CGGCCCTTGTTCTTTTAGTTAGC 60.120 47.826 0.00 0.00 0.00 3.09
265 267 3.119955 GCGGCCCTTGTTCTTTTAGTTAG 60.120 47.826 0.00 0.00 0.00 2.34
266 268 2.815503 GCGGCCCTTGTTCTTTTAGTTA 59.184 45.455 0.00 0.00 0.00 2.24
267 269 1.611977 GCGGCCCTTGTTCTTTTAGTT 59.388 47.619 0.00 0.00 0.00 2.24
268 270 1.202891 AGCGGCCCTTGTTCTTTTAGT 60.203 47.619 0.00 0.00 0.00 2.24
312 314 2.079158 CAAGATTATCGCCGGCATCAT 58.921 47.619 28.98 17.11 0.00 2.45
322 324 5.659463 GGGAGGAGATGATCAAGATTATCG 58.341 45.833 0.00 0.00 38.42 2.92
830 861 2.784347 GAACAAAGGTCAGGGAGAAGG 58.216 52.381 0.00 0.00 0.00 3.46
841 872 1.000496 GTCTCCGAGTCGAACAAAGGT 60.000 52.381 15.64 0.00 0.00 3.50
844 875 0.946528 TCGTCTCCGAGTCGAACAAA 59.053 50.000 15.64 0.00 38.40 2.83
907 938 4.537015 CTGGGTTTACTCTTTGCTTTTCG 58.463 43.478 0.00 0.00 0.00 3.46
958 997 1.546029 GGGCTGGGCTCAAAACTAAAG 59.454 52.381 0.00 0.00 0.00 1.85
962 1001 1.232792 TTGGGCTGGGCTCAAAACT 59.767 52.632 2.08 0.00 46.67 2.66
988 1027 8.024145 ACTCTTTGTTCTTTTCTTCTCCTAGA 57.976 34.615 0.00 0.00 0.00 2.43
993 1032 8.129840 GGGTTTACTCTTTGTTCTTTTCTTCTC 58.870 37.037 0.00 0.00 0.00 2.87
1147 1245 3.268032 AAGGAGGCAGGTTGGGGG 61.268 66.667 0.00 0.00 0.00 5.40
1166 1264 2.044650 GCTGCTGGGCTTGGATGA 60.045 61.111 0.00 0.00 0.00 2.92
1182 1280 1.950973 GAACGAGGAGGAGGAGGTGC 61.951 65.000 0.00 0.00 0.00 5.01
1503 1601 4.415150 CCCCATGCCTGTCACGCT 62.415 66.667 0.00 0.00 0.00 5.07
1597 1695 6.483307 CGTATCCTTCAATGAGCCTTGAATAA 59.517 38.462 7.04 1.19 42.54 1.40
1600 1698 4.081142 TCGTATCCTTCAATGAGCCTTGAA 60.081 41.667 6.55 6.55 41.56 2.69
1665 1763 8.941977 CAGGTAAACAATTGCACAGTAGTATTA 58.058 33.333 5.05 0.00 0.00 0.98
1666 1764 7.447238 ACAGGTAAACAATTGCACAGTAGTATT 59.553 33.333 5.05 0.00 0.00 1.89
1667 1765 6.940298 ACAGGTAAACAATTGCACAGTAGTAT 59.060 34.615 5.05 0.00 0.00 2.12
1668 1766 6.203915 CACAGGTAAACAATTGCACAGTAGTA 59.796 38.462 5.05 0.00 0.00 1.82
1669 1767 5.008613 CACAGGTAAACAATTGCACAGTAGT 59.991 40.000 5.05 0.00 0.00 2.73
1670 1768 5.451908 CACAGGTAAACAATTGCACAGTAG 58.548 41.667 5.05 0.00 0.00 2.57
1672 1770 3.068024 CCACAGGTAAACAATTGCACAGT 59.932 43.478 5.05 1.86 0.00 3.55
1673 1771 3.068024 ACCACAGGTAAACAATTGCACAG 59.932 43.478 5.05 1.28 32.11 3.66
1676 1774 6.412362 AAATACCACAGGTAAACAATTGCA 57.588 33.333 5.05 0.00 41.85 4.08
1677 1775 7.307692 CCAAAAATACCACAGGTAAACAATTGC 60.308 37.037 5.05 0.00 41.85 3.56
1678 1776 7.928706 TCCAAAAATACCACAGGTAAACAATTG 59.071 33.333 3.24 3.24 41.85 2.32
1679 1777 8.024145 TCCAAAAATACCACAGGTAAACAATT 57.976 30.769 0.00 0.00 41.85 2.32
1701 1802 2.303890 ACATCAACAGCTCATCACTCCA 59.696 45.455 0.00 0.00 0.00 3.86
1773 1874 1.339055 TGTGGCAATACCTGTCTCTGC 60.339 52.381 0.00 0.00 40.22 4.26
1853 1958 2.502947 TGAAGCACTACTGCAGGATCAT 59.497 45.455 19.93 0.00 46.97 2.45
1963 2079 4.100529 GTGCGCTGAACTACGAATTACTA 58.899 43.478 9.73 0.00 0.00 1.82
1964 2080 2.921754 GTGCGCTGAACTACGAATTACT 59.078 45.455 9.73 0.00 0.00 2.24
1965 2081 2.664568 TGTGCGCTGAACTACGAATTAC 59.335 45.455 9.73 0.00 0.00 1.89
1997 2113 4.096311 CGAAGATCGTACACAACCTACAG 58.904 47.826 0.00 0.00 34.72 2.74
2106 2224 1.344953 AACTCACAGTGGCAGTCCCA 61.345 55.000 0.00 0.00 42.79 4.37
2109 2227 0.886490 CCCAACTCACAGTGGCAGTC 60.886 60.000 0.00 0.00 0.00 3.51
2406 2534 1.084289 GTTTCGCCTTATCGGTGCTT 58.916 50.000 0.00 0.00 43.21 3.91
2426 2568 2.137425 TATCCTGTGCCGCCGTATCG 62.137 60.000 0.00 0.00 0.00 2.92
2427 2569 0.666577 GTATCCTGTGCCGCCGTATC 60.667 60.000 0.00 0.00 0.00 2.24
2428 2570 1.366366 GTATCCTGTGCCGCCGTAT 59.634 57.895 0.00 0.00 0.00 3.06
2429 2571 2.809706 GTATCCTGTGCCGCCGTA 59.190 61.111 0.00 0.00 0.00 4.02
2430 2572 4.508128 CGTATCCTGTGCCGCCGT 62.508 66.667 0.00 0.00 0.00 5.68
2433 2575 4.830765 TGCCGTATCCTGTGCCGC 62.831 66.667 0.00 0.00 0.00 6.53
2434 2576 1.095228 AATTGCCGTATCCTGTGCCG 61.095 55.000 0.00 0.00 0.00 5.69
2435 2577 1.065551 GAAATTGCCGTATCCTGTGCC 59.934 52.381 0.00 0.00 0.00 5.01
2436 2578 2.017049 AGAAATTGCCGTATCCTGTGC 58.983 47.619 0.00 0.00 0.00 4.57
2437 2579 4.693283 TCTAGAAATTGCCGTATCCTGTG 58.307 43.478 0.00 0.00 0.00 3.66
2438 2580 5.552870 ATCTAGAAATTGCCGTATCCTGT 57.447 39.130 0.00 0.00 0.00 4.00
2439 2581 6.455647 TGTATCTAGAAATTGCCGTATCCTG 58.544 40.000 0.00 0.00 0.00 3.86
2440 2582 6.665992 TGTATCTAGAAATTGCCGTATCCT 57.334 37.500 0.00 0.00 0.00 3.24
2460 2602 2.863401 ATACTCGTCGCATTGCTGTA 57.137 45.000 7.12 3.08 0.00 2.74
2554 2709 1.610379 AATCAGGCAACCAAGGGGC 60.610 57.895 0.00 0.00 37.90 5.80
2577 2732 4.657013 AGTAGAAAAGAAAAGAGGCCTGG 58.343 43.478 12.00 0.00 0.00 4.45
2580 2735 4.011023 GGGAGTAGAAAAGAAAAGAGGCC 58.989 47.826 0.00 0.00 0.00 5.19
2596 2765 7.626084 TCTTATATTTTTGGGACAGAGGGAGTA 59.374 37.037 0.00 0.00 42.39 2.59
2597 2766 6.447084 TCTTATATTTTTGGGACAGAGGGAGT 59.553 38.462 0.00 0.00 42.39 3.85
2598 2767 6.900194 TCTTATATTTTTGGGACAGAGGGAG 58.100 40.000 0.00 0.00 42.39 4.30
2599 2768 6.901615 TCTTATATTTTTGGGACAGAGGGA 57.098 37.500 0.00 0.00 42.39 4.20
2600 2769 6.038271 CGTTCTTATATTTTTGGGACAGAGGG 59.962 42.308 0.00 0.00 42.39 4.30
2601 2770 6.598064 ACGTTCTTATATTTTTGGGACAGAGG 59.402 38.462 0.00 0.00 42.39 3.69
2602 2771 7.611213 ACGTTCTTATATTTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
2603 2772 7.989416 AACGTTCTTATATTTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
2604 2773 9.471084 AAAAACGTTCTTATATTTTTGGGACAG 57.529 29.630 0.00 0.00 42.39 3.51
2632 2801 6.345920 ACGTTTTTGATACTATGCTAGTGC 57.654 37.500 6.21 0.00 39.81 4.40
2633 2802 8.186178 AGAACGTTTTTGATACTATGCTAGTG 57.814 34.615 0.46 0.00 39.81 2.74
2634 2803 8.773404 AAGAACGTTTTTGATACTATGCTAGT 57.227 30.769 0.46 2.19 42.68 2.57
2645 2814 9.634163 GTCCCAAAATATAAGAACGTTTTTGAT 57.366 29.630 13.87 4.93 38.79 2.57
2646 2815 7.804129 CGTCCCAAAATATAAGAACGTTTTTGA 59.196 33.333 13.87 2.81 38.79 2.69
2647 2816 7.061326 CCGTCCCAAAATATAAGAACGTTTTTG 59.939 37.037 13.87 12.16 37.14 2.44
2648 2817 7.040548 TCCGTCCCAAAATATAAGAACGTTTTT 60.041 33.333 9.22 9.22 0.00 1.94
2649 2818 6.430616 TCCGTCCCAAAATATAAGAACGTTTT 59.569 34.615 0.46 0.00 0.00 2.43
2650 2819 5.939296 TCCGTCCCAAAATATAAGAACGTTT 59.061 36.000 0.46 0.00 0.00 3.60
2651 2820 5.490159 TCCGTCCCAAAATATAAGAACGTT 58.510 37.500 0.00 0.00 0.00 3.99
2652 2821 5.088680 TCCGTCCCAAAATATAAGAACGT 57.911 39.130 0.00 0.00 0.00 3.99
2653 2822 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
2654 2823 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
2655 2824 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
2656 2825 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
2657 2826 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
2658 2827 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
2659 2828 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
2660 2829 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2661 2830 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2662 2831 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
2663 2832 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
2664 2833 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2665 2834 0.324091 GACTACTCCCTCCGTCCCAA 60.324 60.000 0.00 0.00 0.00 4.12
2666 2835 1.212934 AGACTACTCCCTCCGTCCCA 61.213 60.000 0.00 0.00 0.00 4.37
2667 2836 0.033306 AAGACTACTCCCTCCGTCCC 60.033 60.000 0.00 0.00 0.00 4.46
2668 2837 1.340795 TGAAGACTACTCCCTCCGTCC 60.341 57.143 0.00 0.00 0.00 4.79
2669 2838 2.125773 TGAAGACTACTCCCTCCGTC 57.874 55.000 0.00 0.00 0.00 4.79
2670 2839 2.599408 TTGAAGACTACTCCCTCCGT 57.401 50.000 0.00 0.00 0.00 4.69
2671 2840 3.024547 TCATTGAAGACTACTCCCTCCG 58.975 50.000 0.00 0.00 0.00 4.63
2672 2841 3.133183 GGTCATTGAAGACTACTCCCTCC 59.867 52.174 0.00 0.00 38.57 4.30
2673 2842 3.769844 TGGTCATTGAAGACTACTCCCTC 59.230 47.826 0.00 0.00 38.57 4.30
2674 2843 3.791320 TGGTCATTGAAGACTACTCCCT 58.209 45.455 0.00 0.00 38.57 4.20
2675 2844 4.443598 GGATGGTCATTGAAGACTACTCCC 60.444 50.000 0.00 0.00 38.57 4.30
2676 2845 4.162320 TGGATGGTCATTGAAGACTACTCC 59.838 45.833 0.00 0.00 38.57 3.85
2677 2846 5.344743 TGGATGGTCATTGAAGACTACTC 57.655 43.478 0.00 0.00 38.57 2.59
2678 2847 4.163078 CCTGGATGGTCATTGAAGACTACT 59.837 45.833 0.00 0.00 38.57 2.57
2679 2848 4.446371 CCTGGATGGTCATTGAAGACTAC 58.554 47.826 0.00 0.00 38.57 2.73
2680 2849 4.760530 CCTGGATGGTCATTGAAGACTA 57.239 45.455 0.00 0.00 38.57 2.59
2681 2850 3.641434 CCTGGATGGTCATTGAAGACT 57.359 47.619 0.00 0.00 38.57 3.24
2693 2862 1.219213 AGGAGTAGAGGACCTGGATGG 59.781 57.143 0.00 0.00 42.93 3.51
2694 2863 2.091610 TGAGGAGTAGAGGACCTGGATG 60.092 54.545 0.00 0.00 33.89 3.51
2707 2876 4.835284 TTTGCATACACCATGAGGAGTA 57.165 40.909 0.00 0.00 43.64 2.59
2820 2989 5.163754 GCCTACAGCTTGTTTATGTTACTGG 60.164 44.000 0.00 0.00 38.99 4.00
2936 3130 1.233285 GCTGTGTTGCTGCTACTGCT 61.233 55.000 14.81 0.00 40.48 4.24
2951 3145 0.886043 TTGCTCGCTGATGTTGCTGT 60.886 50.000 0.00 0.00 0.00 4.40
2978 3172 6.085555 TGTGGCTGCTAGTAGAATATGTAC 57.914 41.667 12.54 0.38 0.00 2.90
3015 3209 1.841450 CTGGAGTACGAATTCGGCTC 58.159 55.000 29.95 29.95 44.95 4.70
3020 3214 3.247006 TCCAAGCTGGAGTACGAATTC 57.753 47.619 0.00 0.00 42.67 2.17
3074 3292 7.039082 GCTCCTCTCTAGTTGATCTATCCATTT 60.039 40.741 0.00 0.00 0.00 2.32
3144 3362 1.959226 GTTTTCTCTGTCGCCGCCA 60.959 57.895 0.00 0.00 0.00 5.69
3163 3381 2.124983 GCTGCCTCGGCTGAATCA 60.125 61.111 17.57 0.00 41.63 2.57
3171 3389 2.124819 ATCAAGCTGCTGCCTCGG 60.125 61.111 12.44 0.00 40.80 4.63
3178 3396 2.424557 CTGTTGACTCATCAAGCTGCT 58.575 47.619 0.00 0.00 45.58 4.24
3181 3399 1.612726 GCCCTGTTGACTCATCAAGCT 60.613 52.381 0.00 0.00 45.58 3.74
3187 3405 1.376424 CGCTGCCCTGTTGACTCAT 60.376 57.895 0.00 0.00 0.00 2.90
3188 3406 2.031012 CGCTGCCCTGTTGACTCA 59.969 61.111 0.00 0.00 0.00 3.41
3238 3478 2.507102 CACTCGCCGCCTGTAGTG 60.507 66.667 0.00 0.00 33.98 2.74
3239 3479 4.436998 GCACTCGCCGCCTGTAGT 62.437 66.667 0.00 0.00 0.00 2.73
3249 3489 2.633657 CCGCATAATGGCACTCGC 59.366 61.111 0.00 0.00 37.44 5.03
3273 3513 1.671742 GCCGTCTGGACTTTCCTCA 59.328 57.895 0.00 0.00 37.46 3.86
3297 3537 1.446272 GCCGTCTGGACTTTCCTCG 60.446 63.158 0.00 0.00 37.46 4.63
3298 3538 1.446272 CGCCGTCTGGACTTTCCTC 60.446 63.158 0.00 0.00 37.46 3.71
3299 3539 2.657237 CGCCGTCTGGACTTTCCT 59.343 61.111 0.00 0.00 37.46 3.36
3300 3540 2.434359 CCGCCGTCTGGACTTTCC 60.434 66.667 0.00 0.00 37.49 3.13
3301 3541 3.119096 GCCGCCGTCTGGACTTTC 61.119 66.667 0.00 0.00 37.49 2.62
3321 3561 4.504916 CTGCCTGGACTCGCCTCG 62.505 72.222 0.00 0.00 37.63 4.63
3327 3567 4.767255 CGCCACCTGCCTGGACTC 62.767 72.222 0.00 0.00 39.71 3.36
3373 3613 0.933047 TTCACTCTGTTCGCACGACG 60.933 55.000 0.00 0.00 45.62 5.12
3384 3624 3.064900 CCCCCTCTCTTTTTCACTCTG 57.935 52.381 0.00 0.00 0.00 3.35
3457 3697 2.604914 GCTGTTCACTGTCCATGATACG 59.395 50.000 0.00 0.00 0.00 3.06
3535 3779 2.878991 GTCACGATACGCTGCGCA 60.879 61.111 23.51 10.98 0.00 6.09
3539 3783 1.132199 GACACGGTCACGATACGCTG 61.132 60.000 0.00 0.00 44.60 5.18
3541 3785 1.132199 CTGACACGGTCACGATACGC 61.132 60.000 3.02 0.00 44.60 4.42
3545 3789 1.888436 ATGGCTGACACGGTCACGAT 61.888 55.000 3.02 2.23 44.60 3.73
3546 3790 1.245376 TATGGCTGACACGGTCACGA 61.245 55.000 3.02 0.36 44.60 4.35
3548 3792 1.571919 GATATGGCTGACACGGTCAC 58.428 55.000 3.02 1.92 37.67 3.67
3549 3793 0.102300 CGATATGGCTGACACGGTCA 59.898 55.000 6.57 6.57 40.50 4.02
3550 3794 0.597637 CCGATATGGCTGACACGGTC 60.598 60.000 3.06 0.00 33.10 4.79
3551 3795 1.441729 CCGATATGGCTGACACGGT 59.558 57.895 3.06 0.00 33.10 4.83
3583 3827 1.228154 AGGAAACTGGCGTGTTCCC 60.228 57.895 8.72 0.59 41.13 3.97
3586 3830 0.390124 TACGAGGAAACTGGCGTGTT 59.610 50.000 0.00 0.00 44.43 3.32
3591 3835 0.175073 ACCGATACGAGGAAACTGGC 59.825 55.000 0.00 0.00 44.43 4.85
3956 4212 7.441903 AAAATATTTAGGAACCGAGGGAGTA 57.558 36.000 0.01 0.00 0.00 2.59
3957 4213 5.970501 AAATATTTAGGAACCGAGGGAGT 57.029 39.130 0.00 0.00 0.00 3.85
3958 4214 7.054751 AGAAAAATATTTAGGAACCGAGGGAG 58.945 38.462 0.01 0.00 0.00 4.30
3959 4215 6.965607 AGAAAAATATTTAGGAACCGAGGGA 58.034 36.000 0.01 0.00 0.00 4.20
3960 4216 7.640597 AAGAAAAATATTTAGGAACCGAGGG 57.359 36.000 0.01 0.00 0.00 4.30
3961 4217 8.957466 AGAAAGAAAAATATTTAGGAACCGAGG 58.043 33.333 0.01 0.00 0.00 4.63
3979 4235 9.613428 TCACTTGTTGAAATCTCTAGAAAGAAA 57.387 29.630 0.00 0.00 0.00 2.52
3980 4236 9.046296 GTCACTTGTTGAAATCTCTAGAAAGAA 57.954 33.333 0.00 0.00 35.39 2.52
3981 4237 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3982 4238 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3983 4239 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3984 4240 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3985 4241 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3986 4242 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3987 4243 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3988 4244 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3989 4245 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3990 4246 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3991 4247 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3992 4248 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3993 4249 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3994 4250 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3995 4251 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3996 4252 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3997 4253 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3998 4254 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3999 4255 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
4000 4256 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4001 4257 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4002 4258 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4003 4259 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4004 4260 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4005 4261 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4006 4262 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4007 4263 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4008 4264 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4009 4265 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4010 4266 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4011 4267 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4012 4268 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4013 4269 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4014 4270 6.500684 TTGTAGATTCACTCATTTTGCTCC 57.499 37.500 0.00 0.00 0.00 4.70
4017 4273 9.793252 ACATATTTGTAGATTCACTCATTTTGC 57.207 29.630 0.00 0.00 33.16 3.68
4038 4294 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
4040 4296 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
4041 4297 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
4042 4298 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
4043 4299 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
4044 4300 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
4045 4301 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
4046 4302 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
4047 4303 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
4048 4304 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
4049 4305 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
4062 4318 7.712204 TTTTAGGGATTTCAAATGGACTACC 57.288 36.000 0.00 0.00 0.00 3.18
4063 4319 9.020731 TCTTTTTAGGGATTTCAAATGGACTAC 57.979 33.333 0.00 0.00 0.00 2.73
4064 4320 9.020731 GTCTTTTTAGGGATTTCAAATGGACTA 57.979 33.333 0.00 0.00 0.00 2.59
4065 4321 7.508977 TGTCTTTTTAGGGATTTCAAATGGACT 59.491 33.333 0.00 0.00 0.00 3.85
4066 4322 7.666623 TGTCTTTTTAGGGATTTCAAATGGAC 58.333 34.615 0.00 0.00 0.00 4.02
4067 4323 7.847711 TGTCTTTTTAGGGATTTCAAATGGA 57.152 32.000 0.00 0.00 0.00 3.41
4068 4324 8.900983 TTTGTCTTTTTAGGGATTTCAAATGG 57.099 30.769 0.00 0.00 0.00 3.16
4084 4340 9.035890 CCCTCCTTTCCTAAATATTTGTCTTTT 57.964 33.333 11.05 0.00 0.00 2.27
4085 4341 8.398743 TCCCTCCTTTCCTAAATATTTGTCTTT 58.601 33.333 11.05 0.00 0.00 2.52
4086 4342 7.939781 TCCCTCCTTTCCTAAATATTTGTCTT 58.060 34.615 11.05 0.00 0.00 3.01
4087 4343 7.184753 ACTCCCTCCTTTCCTAAATATTTGTCT 59.815 37.037 11.05 0.00 0.00 3.41
4088 4344 7.347252 ACTCCCTCCTTTCCTAAATATTTGTC 58.653 38.462 11.05 0.00 0.00 3.18
4089 4345 7.285340 ACTCCCTCCTTTCCTAAATATTTGT 57.715 36.000 11.05 0.00 0.00 2.83
4090 4346 8.714906 TCTACTCCCTCCTTTCCTAAATATTTG 58.285 37.037 11.05 1.40 0.00 2.32
4091 4347 8.871570 TCTACTCCCTCCTTTCCTAAATATTT 57.128 34.615 5.89 5.89 0.00 1.40
4092 4348 8.871570 TTCTACTCCCTCCTTTCCTAAATATT 57.128 34.615 0.00 0.00 0.00 1.28
4096 4352 9.603189 CTATATTCTACTCCCTCCTTTCCTAAA 57.397 37.037 0.00 0.00 0.00 1.85
4097 4353 8.744365 ACTATATTCTACTCCCTCCTTTCCTAA 58.256 37.037 0.00 0.00 0.00 2.69
4098 4354 8.303338 ACTATATTCTACTCCCTCCTTTCCTA 57.697 38.462 0.00 0.00 0.00 2.94
4099 4355 7.182017 ACTATATTCTACTCCCTCCTTTCCT 57.818 40.000 0.00 0.00 0.00 3.36
4100 4356 8.973182 CATACTATATTCTACTCCCTCCTTTCC 58.027 40.741 0.00 0.00 0.00 3.13
4101 4357 9.536510 ACATACTATATTCTACTCCCTCCTTTC 57.463 37.037 0.00 0.00 0.00 2.62
4102 4358 9.536510 GACATACTATATTCTACTCCCTCCTTT 57.463 37.037 0.00 0.00 0.00 3.11
4103 4359 8.907050 AGACATACTATATTCTACTCCCTCCTT 58.093 37.037 0.00 0.00 0.00 3.36
4104 4360 8.333235 CAGACATACTATATTCTACTCCCTCCT 58.667 40.741 0.00 0.00 0.00 3.69
4105 4361 7.067737 GCAGACATACTATATTCTACTCCCTCC 59.932 44.444 0.00 0.00 0.00 4.30
4106 4362 7.832187 AGCAGACATACTATATTCTACTCCCTC 59.168 40.741 0.00 0.00 0.00 4.30
4107 4363 7.704727 AGCAGACATACTATATTCTACTCCCT 58.295 38.462 0.00 0.00 0.00 4.20
4108 4364 7.948034 AGCAGACATACTATATTCTACTCCC 57.052 40.000 0.00 0.00 0.00 4.30
4295 6813 4.762251 GCAGGGACAGATTAATTATGGGTC 59.238 45.833 6.57 0.00 0.00 4.46
4306 6824 1.963985 AAGGAGAGCAGGGACAGATT 58.036 50.000 0.00 0.00 0.00 2.40
4307 6825 1.963985 AAAGGAGAGCAGGGACAGAT 58.036 50.000 0.00 0.00 0.00 2.90
4354 6873 3.519510 AGCTCTTCCCTATGTGCTTAACA 59.480 43.478 0.00 0.00 44.79 2.41
4443 6962 5.394773 GCTGGTTAGGAACAAGTTGGAAAAA 60.395 40.000 7.96 0.00 34.78 1.94
4471 6990 4.380841 AACGACGAGGCATATACAAGAA 57.619 40.909 0.00 0.00 0.00 2.52
4473 6992 3.302480 GCAAACGACGAGGCATATACAAG 60.302 47.826 0.00 0.00 0.00 3.16
4486 7005 2.666022 TGACTATGACATGCAAACGACG 59.334 45.455 0.00 0.00 0.00 5.12
4489 7008 5.281693 TCTTTGACTATGACATGCAAACG 57.718 39.130 0.00 2.28 0.00 3.60
4518 7037 3.725490 TCATGTGCATCTCTGACTATGC 58.275 45.455 11.47 11.47 46.92 3.14
4570 7089 6.094048 CCTCAGATGTTTCCGTATCAACATTT 59.906 38.462 0.00 0.00 42.46 2.32
4758 7278 3.965379 TGACATCTTTTGCATTGCCAT 57.035 38.095 6.12 0.00 0.00 4.40
4850 7370 5.871524 ACAGCAGATGTTGAAGTATACAGTG 59.128 40.000 5.50 0.00 39.96 3.66
4913 7433 0.809385 CCTGAACAGAATGCTGCCAG 59.191 55.000 14.01 14.01 46.26 4.85
4924 7444 2.662791 CGCAAAACATCGACCTGAACAG 60.663 50.000 0.00 0.00 0.00 3.16
5027 7557 6.970484 AGTATGTTTTCTGGTAAAACTGCAG 58.030 36.000 13.48 13.48 39.97 4.41
5146 7685 5.361571 TGTTAGGTTTCACAGACTGACAGTA 59.638 40.000 8.41 0.00 0.00 2.74
5163 7702 4.406456 TGATTTGGCTGTGATTGTTAGGT 58.594 39.130 0.00 0.00 0.00 3.08
5168 7707 5.416083 CAATCATGATTTGGCTGTGATTGT 58.584 37.500 18.41 0.00 45.38 2.71
5204 7743 5.763204 TGGAGACAGAATAAGTTGGTTTCAC 59.237 40.000 0.00 0.00 35.01 3.18
5279 7822 6.974048 TCAATAATTTTCCAGATTGTCATGCG 59.026 34.615 0.00 0.00 32.33 4.73
5316 7859 8.962884 ATTTAGATTTTGTGCCTTCACTTTTT 57.037 26.923 0.00 0.00 43.49 1.94
5377 7920 2.158696 CCTTAGAGAAATCTGCAGGGGG 60.159 54.545 15.13 0.00 0.00 5.40
5916 8476 9.971922 CAAGGTGAGTTTTCTGATTCTTTAATT 57.028 29.630 0.00 0.00 0.00 1.40
5948 8512 6.920569 TTTGACGAAGAAGCTAAAGTTCTT 57.079 33.333 0.00 0.00 45.05 2.52
6045 8609 5.396213 GCTGAGACTGAAAACCCTGATCTAT 60.396 44.000 0.00 0.00 0.00 1.98
6051 8615 2.260844 TGCTGAGACTGAAAACCCTG 57.739 50.000 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.