Multiple sequence alignment - TraesCS3B01G296700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G296700 chr3B 100.000 4936 0 0 1 4936 475992162 475997097 0.000000e+00 9116
1 TraesCS3B01G296700 chr3B 91.019 746 44 14 4203 4936 739945649 739946383 0.000000e+00 985
2 TraesCS3B01G296700 chr3B 89.614 751 43 12 4209 4936 586616587 586615849 0.000000e+00 922
3 TraesCS3B01G296700 chr3B 87.947 755 39 19 4207 4936 92668186 92667459 0.000000e+00 843
4 TraesCS3B01G296700 chr3B 88.273 631 38 17 4204 4817 651028610 651029221 0.000000e+00 723
5 TraesCS3B01G296700 chr3B 87.908 521 53 7 3 516 739212687 739213204 5.470000e-169 604
6 TraesCS3B01G296700 chr3D 94.049 2319 81 27 859 3156 365518554 365520836 0.000000e+00 3465
7 TraesCS3B01G296700 chr3D 92.866 827 43 10 3384 4207 365521101 365521914 0.000000e+00 1186
8 TraesCS3B01G296700 chr3D 88.889 522 49 4 4 516 47196508 47197029 6.970000e-178 634
9 TraesCS3B01G296700 chr3D 85.687 524 57 10 1 516 474509422 474508909 2.020000e-148 536
10 TraesCS3B01G296700 chr3D 88.978 372 19 15 4207 4574 13156301 13155948 1.630000e-119 440
11 TraesCS3B01G296700 chr3D 96.552 87 2 1 3158 3244 95243931 95244016 5.150000e-30 143
12 TraesCS3B01G296700 chr3D 94.565 92 3 2 3155 3245 54783319 54783409 1.850000e-29 141
13 TraesCS3B01G296700 chr3A 92.082 2248 123 28 749 2974 487436393 487438607 0.000000e+00 3114
14 TraesCS3B01G296700 chr3A 89.385 829 50 15 3381 4205 487438851 487439645 0.000000e+00 1009
15 TraesCS3B01G296700 chr3A 91.608 143 8 4 3016 3157 487438603 487438742 1.400000e-45 195
16 TraesCS3B01G296700 chr3A 93.023 129 7 2 3242 3369 487438743 487438870 2.350000e-43 187
17 TraesCS3B01G296700 chr3A 92.157 102 8 0 654 755 59430434 59430535 1.430000e-30 145
18 TraesCS3B01G296700 chr3A 88.496 113 9 4 3149 3260 437858545 437858436 3.100000e-27 134
19 TraesCS3B01G296700 chr5B 92.742 744 33 10 4207 4936 712468783 712469519 0.000000e+00 1055
20 TraesCS3B01G296700 chr5B 89.516 744 42 17 4207 4936 678098641 678097920 0.000000e+00 909
21 TraesCS3B01G296700 chr5B 89.740 731 39 12 4207 4936 640410644 640409949 0.000000e+00 902
22 TraesCS3B01G296700 chr5B 93.590 234 15 0 4207 4440 32138105 32137872 2.830000e-92 350
23 TraesCS3B01G296700 chr5B 94.000 100 6 0 654 753 27484741 27484840 8.560000e-33 152
24 TraesCS3B01G296700 chr5B 93.204 103 4 3 655 755 696154530 696154631 1.110000e-31 148
25 TraesCS3B01G296700 chr5B 80.690 145 18 3 617 753 680947326 680947468 2.430000e-18 104
26 TraesCS3B01G296700 chr1B 90.579 743 37 10 4207 4936 49929682 49930404 0.000000e+00 953
27 TraesCS3B01G296700 chr1B 83.484 775 59 26 4203 4936 41798797 41798051 0.000000e+00 658
28 TraesCS3B01G296700 chr1B 92.857 98 4 3 3158 3254 636840176 636840271 6.660000e-29 139
29 TraesCS3B01G296700 chr7B 89.799 745 42 8 4204 4936 588845502 588846224 0.000000e+00 924
30 TraesCS3B01G296700 chr7B 88.298 752 44 13 4207 4936 679571457 679572186 0.000000e+00 861
31 TraesCS3B01G296700 chr7B 92.453 106 8 0 655 760 55181904 55182009 8.560000e-33 152
32 TraesCS3B01G296700 chr7B 93.269 104 6 1 655 758 125882185 125882287 8.560000e-33 152
33 TraesCS3B01G296700 chrUn 88.757 756 40 10 4204 4936 8848241 8848974 0.000000e+00 883
34 TraesCS3B01G296700 chrUn 90.338 414 25 5 4207 4620 295995396 295994998 3.380000e-146 529
35 TraesCS3B01G296700 chrUn 90.338 414 25 5 4207 4620 313229408 313229010 3.380000e-146 529
36 TraesCS3B01G296700 chrUn 94.444 90 4 1 3156 3245 369753263 369753175 2.400000e-28 137
37 TraesCS3B01G296700 chrUn 94.382 89 4 1 3156 3244 27475952 27476039 8.620000e-28 135
38 TraesCS3B01G296700 chrUn 94.318 88 4 1 3159 3246 2693314 2693228 3.100000e-27 134
39 TraesCS3B01G296700 chrUn 91.753 97 6 2 3151 3247 356909649 356909555 3.100000e-27 134
40 TraesCS3B01G296700 chrUn 93.333 90 4 2 3156 3244 132121144 132121232 1.110000e-26 132
41 TraesCS3B01G296700 chrUn 95.181 83 3 1 3156 3238 42198682 42198763 4.010000e-26 130
42 TraesCS3B01G296700 chrUn 94.186 86 4 1 3159 3244 180382753 180382669 4.010000e-26 130
43 TraesCS3B01G296700 chrUn 94.186 86 4 1 3159 3244 359670012 359670096 4.010000e-26 130
44 TraesCS3B01G296700 chrUn 93.182 88 5 1 3157 3244 87109207 87109121 1.440000e-25 128
45 TraesCS3B01G296700 chr2B 88.079 755 52 12 4196 4936 360352512 360351782 0.000000e+00 861
46 TraesCS3B01G296700 chr2B 88.291 743 51 16 4207 4936 728929643 728930362 0.000000e+00 857
47 TraesCS3B01G296700 chr2B 83.019 583 83 7 5 579 777364380 777364954 9.470000e-142 514
48 TraesCS3B01G296700 chr2B 92.899 338 17 7 4603 4936 114529889 114530223 7.430000e-133 484
49 TraesCS3B01G296700 chr2B 95.604 91 3 1 3154 3244 268813644 268813555 1.430000e-30 145
50 TraesCS3B01G296700 chr6B 88.156 743 54 11 4207 4936 35073222 35072501 0.000000e+00 854
51 TraesCS3B01G296700 chr6B 88.022 743 55 11 4207 4936 35102517 35101796 0.000000e+00 848
52 TraesCS3B01G296700 chr6B 93.069 101 5 2 654 753 678685874 678685775 3.980000e-31 147
53 TraesCS3B01G296700 chr6D 88.008 517 52 3 1 514 156440966 156441475 1.970000e-168 603
54 TraesCS3B01G296700 chr6D 94.565 92 3 2 3155 3245 271233532 271233442 1.850000e-29 141
55 TraesCS3B01G296700 chr6D 94.505 91 3 2 3155 3244 30079472 30079383 6.660000e-29 139
56 TraesCS3B01G296700 chr6D 95.402 87 3 1 3159 3245 382611173 382611088 2.400000e-28 137
57 TraesCS3B01G296700 chr6D 96.429 84 2 1 3155 3238 456456082 456456164 2.400000e-28 137
58 TraesCS3B01G296700 chr6D 95.349 86 3 1 3159 3244 104147596 104147680 8.620000e-28 135
59 TraesCS3B01G296700 chr6D 93.407 91 4 2 3155 3245 120647232 120647320 3.100000e-27 134
60 TraesCS3B01G296700 chr1D 87.091 519 57 4 1 516 418099387 418099898 3.310000e-161 579
61 TraesCS3B01G296700 chr1D 85.547 512 67 2 1 512 403231864 403232368 3.380000e-146 529
62 TraesCS3B01G296700 chr1D 88.889 153 8 7 1534 1677 7349855 7349703 3.930000e-41 180
63 TraesCS3B01G296700 chr1D 95.455 88 3 1 3159 3246 197821652 197821566 6.660000e-29 139
64 TraesCS3B01G296700 chr1D 92.708 96 6 1 3159 3254 16084938 16084844 2.400000e-28 137
65 TraesCS3B01G296700 chr1D 92.708 96 6 1 3159 3254 16086893 16086799 2.400000e-28 137
66 TraesCS3B01G296700 chr1D 91.837 98 7 1 3154 3251 483877599 483877503 8.620000e-28 135
67 TraesCS3B01G296700 chr4A 82.748 626 90 9 1 615 4694674 4694056 4.350000e-150 542
68 TraesCS3B01G296700 chr4A 87.760 384 25 16 4194 4574 728717895 728718259 3.530000e-116 429
69 TraesCS3B01G296700 chr4A 89.032 155 7 4 1534 1678 363744551 363744705 3.030000e-42 183
70 TraesCS3B01G296700 chr4A 91.743 109 8 1 650 757 718108315 718108207 3.080000e-32 150
71 TraesCS3B01G296700 chr4A 92.000 100 6 2 3159 3258 434312119 434312216 6.660000e-29 139
72 TraesCS3B01G296700 chr7D 85.742 519 64 3 1 516 540638263 540638774 1.560000e-149 540
73 TraesCS3B01G296700 chr7D 92.079 101 4 3 3146 3244 481573740 481573838 6.660000e-29 139
74 TraesCS3B01G296700 chr2D 88.441 372 21 15 4207 4574 19066764 19067117 3.530000e-116 429
75 TraesCS3B01G296700 chr2D 95.699 93 2 2 3156 3247 384255184 384255275 1.110000e-31 148
76 TraesCS3B01G296700 chr5A 89.103 156 7 6 1531 1676 86662016 86662171 8.440000e-43 185
77 TraesCS3B01G296700 chr5A 89.032 155 9 4 1533 1679 354544083 354544237 8.440000e-43 185
78 TraesCS3B01G296700 chr5A 93.939 99 6 0 655 753 703665801 703665899 3.080000e-32 150
79 TraesCS3B01G296700 chr5D 88.961 154 7 4 1533 1676 285256712 285256865 1.090000e-41 182
80 TraesCS3B01G296700 chr5D 93.617 94 5 1 3159 3252 422439823 422439731 6.660000e-29 139
81 TraesCS3B01G296700 chr5D 92.708 96 5 2 3149 3244 51893806 51893713 2.400000e-28 137
82 TraesCS3B01G296700 chr5D 89.623 106 7 4 3156 3259 137915340 137915237 1.110000e-26 132
83 TraesCS3B01G296700 chr4B 88.387 155 8 5 1534 1678 155374567 155374413 1.410000e-40 178
84 TraesCS3B01G296700 chr4B 94.624 93 3 2 3156 3247 500267248 500267339 5.150000e-30 143
85 TraesCS3B01G296700 chr4B 95.556 90 3 1 3156 3245 649830812 649830900 5.150000e-30 143
86 TraesCS3B01G296700 chr4B 87.288 118 12 3 3139 3256 599641783 599641897 1.110000e-26 132
87 TraesCS3B01G296700 chr2A 87.821 156 11 6 1527 1676 690522475 690522322 5.080000e-40 176
88 TraesCS3B01G296700 chr1A 93.269 104 7 0 651 754 405800557 405800660 2.380000e-33 154
89 TraesCS3B01G296700 chr4D 95.506 89 3 1 3159 3247 10274494 10274407 1.850000e-29 141
90 TraesCS3B01G296700 chr4D 93.548 93 5 1 3156 3248 496945173 496945264 2.400000e-28 137
91 TraesCS3B01G296700 chr6A 90.291 103 8 2 3143 3244 26632853 26632954 3.100000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G296700 chr3B 475992162 475997097 4935 False 9116.00 9116 100.0000 1 4936 1 chr3B.!!$F1 4935
1 TraesCS3B01G296700 chr3B 739945649 739946383 734 False 985.00 985 91.0190 4203 4936 1 chr3B.!!$F4 733
2 TraesCS3B01G296700 chr3B 586615849 586616587 738 True 922.00 922 89.6140 4209 4936 1 chr3B.!!$R2 727
3 TraesCS3B01G296700 chr3B 92667459 92668186 727 True 843.00 843 87.9470 4207 4936 1 chr3B.!!$R1 729
4 TraesCS3B01G296700 chr3B 651028610 651029221 611 False 723.00 723 88.2730 4204 4817 1 chr3B.!!$F2 613
5 TraesCS3B01G296700 chr3B 739212687 739213204 517 False 604.00 604 87.9080 3 516 1 chr3B.!!$F3 513
6 TraesCS3B01G296700 chr3D 365518554 365521914 3360 False 2325.50 3465 93.4575 859 4207 2 chr3D.!!$F4 3348
7 TraesCS3B01G296700 chr3D 47196508 47197029 521 False 634.00 634 88.8890 4 516 1 chr3D.!!$F1 512
8 TraesCS3B01G296700 chr3D 474508909 474509422 513 True 536.00 536 85.6870 1 516 1 chr3D.!!$R2 515
9 TraesCS3B01G296700 chr3A 487436393 487439645 3252 False 1126.25 3114 91.5245 749 4205 4 chr3A.!!$F2 3456
10 TraesCS3B01G296700 chr5B 712468783 712469519 736 False 1055.00 1055 92.7420 4207 4936 1 chr5B.!!$F4 729
11 TraesCS3B01G296700 chr5B 678097920 678098641 721 True 909.00 909 89.5160 4207 4936 1 chr5B.!!$R3 729
12 TraesCS3B01G296700 chr5B 640409949 640410644 695 True 902.00 902 89.7400 4207 4936 1 chr5B.!!$R2 729
13 TraesCS3B01G296700 chr1B 49929682 49930404 722 False 953.00 953 90.5790 4207 4936 1 chr1B.!!$F1 729
14 TraesCS3B01G296700 chr1B 41798051 41798797 746 True 658.00 658 83.4840 4203 4936 1 chr1B.!!$R1 733
15 TraesCS3B01G296700 chr7B 588845502 588846224 722 False 924.00 924 89.7990 4204 4936 1 chr7B.!!$F3 732
16 TraesCS3B01G296700 chr7B 679571457 679572186 729 False 861.00 861 88.2980 4207 4936 1 chr7B.!!$F4 729
17 TraesCS3B01G296700 chrUn 8848241 8848974 733 False 883.00 883 88.7570 4204 4936 1 chrUn.!!$F1 732
18 TraesCS3B01G296700 chr2B 360351782 360352512 730 True 861.00 861 88.0790 4196 4936 1 chr2B.!!$R2 740
19 TraesCS3B01G296700 chr2B 728929643 728930362 719 False 857.00 857 88.2910 4207 4936 1 chr2B.!!$F2 729
20 TraesCS3B01G296700 chr2B 777364380 777364954 574 False 514.00 514 83.0190 5 579 1 chr2B.!!$F3 574
21 TraesCS3B01G296700 chr6B 35072501 35073222 721 True 854.00 854 88.1560 4207 4936 1 chr6B.!!$R1 729
22 TraesCS3B01G296700 chr6B 35101796 35102517 721 True 848.00 848 88.0220 4207 4936 1 chr6B.!!$R2 729
23 TraesCS3B01G296700 chr6D 156440966 156441475 509 False 603.00 603 88.0080 1 514 1 chr6D.!!$F3 513
24 TraesCS3B01G296700 chr1D 418099387 418099898 511 False 579.00 579 87.0910 1 516 1 chr1D.!!$F2 515
25 TraesCS3B01G296700 chr1D 403231864 403232368 504 False 529.00 529 85.5470 1 512 1 chr1D.!!$F1 511
26 TraesCS3B01G296700 chr4A 4694056 4694674 618 True 542.00 542 82.7480 1 615 1 chr4A.!!$R1 614
27 TraesCS3B01G296700 chr7D 540638263 540638774 511 False 540.00 540 85.7420 1 516 1 chr7D.!!$F2 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 713 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55 F
671 714 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30 F
915 959 0.112412 AAGTAAAGGGGCACACCTGG 59.888 55.000 0.00 0.00 40.87 4.45 F
961 1005 0.240411 CCCTTCGTCTTCGTCTTCGT 59.760 55.000 0.00 0.00 38.33 3.85 F
1257 1301 0.259938 GGCATCTGGATCCTTTGGGT 59.740 55.000 14.23 0.00 0.00 4.51 F
1542 1588 1.133575 CGACTATCACCTACTCCCCCA 60.134 57.143 0.00 0.00 0.00 4.96 F
3123 3191 1.139498 TGGTCCCATCCTTGCCTCAA 61.139 55.000 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1969 2021 1.224965 GCATGAAGGAGAAGATCGGC 58.775 55.000 0.00 0.0 0.00 5.54 R
2367 2419 2.237643 TCCATAGCAGCAGCAACAAAA 58.762 42.857 3.17 0.0 45.49 2.44 R
2824 2885 2.521105 AAACGTCAGTGTACCCAGAC 57.479 50.000 0.00 0.0 0.00 3.51 R
2840 2901 4.167268 CACTAGTGAGCGGAGTCTAAAAC 58.833 47.826 18.45 0.0 0.00 2.43 R
3091 3159 4.580580 GGATGGGACCAAACAATGATAGAC 59.419 45.833 0.00 0.0 0.00 2.59 R
3396 3649 0.809385 TGCACCGAACCGTTTCAAAA 59.191 45.000 0.00 0.0 0.00 2.44 R
4426 4734 1.079543 GAGCTGGTGTCGCTGACAT 60.080 57.895 13.12 0.0 44.63 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 102 1.754621 CCTAGAGGAGCCGTCTGCA 60.755 63.158 7.42 0.00 44.83 4.41
109 117 1.803555 GTCTGCAGCCTTGTTCTTCTC 59.196 52.381 9.47 0.00 0.00 2.87
140 148 4.697756 CCCTTCTTCGCCCGCACA 62.698 66.667 0.00 0.00 0.00 4.57
141 149 2.436646 CCTTCTTCGCCCGCACAT 60.437 61.111 0.00 0.00 0.00 3.21
160 168 2.386661 TCATTTGGGAGCTTCGAGAC 57.613 50.000 0.00 0.00 0.00 3.36
165 174 2.754658 GGAGCTTCGAGACGGGGA 60.755 66.667 0.00 0.00 0.00 4.81
486 519 3.584834 GAAGCGGGCACAACAAATAAAT 58.415 40.909 0.00 0.00 0.00 1.40
579 622 0.461339 ACGAAAATATCCAGCGCGGT 60.461 50.000 4.23 4.23 35.57 5.68
592 635 0.992802 GCGCGGTGCTTATATAGAGC 59.007 55.000 8.83 8.92 41.73 4.09
593 636 1.260206 CGCGGTGCTTATATAGAGCG 58.740 55.000 0.00 8.27 43.02 5.03
594 637 1.630148 GCGGTGCTTATATAGAGCGG 58.370 55.000 10.29 5.71 43.02 5.52
595 638 1.630148 CGGTGCTTATATAGAGCGGC 58.370 55.000 0.00 0.00 43.02 6.53
596 639 1.736032 CGGTGCTTATATAGAGCGGCC 60.736 57.143 0.00 0.00 43.02 6.13
597 640 1.630148 GTGCTTATATAGAGCGGCCG 58.370 55.000 24.05 24.05 43.02 6.13
598 641 1.067776 GTGCTTATATAGAGCGGCCGT 60.068 52.381 28.70 13.92 43.02 5.68
599 642 1.616865 TGCTTATATAGAGCGGCCGTT 59.383 47.619 28.70 23.32 43.02 4.44
600 643 1.993370 GCTTATATAGAGCGGCCGTTG 59.007 52.381 28.70 7.20 0.00 4.10
601 644 2.607187 CTTATATAGAGCGGCCGTTGG 58.393 52.381 28.70 0.00 0.00 3.77
602 645 1.913778 TATATAGAGCGGCCGTTGGA 58.086 50.000 28.70 11.19 0.00 3.53
603 646 0.603569 ATATAGAGCGGCCGTTGGAG 59.396 55.000 28.70 0.00 0.00 3.86
604 647 0.466739 TATAGAGCGGCCGTTGGAGA 60.467 55.000 28.70 4.85 0.00 3.71
605 648 1.115930 ATAGAGCGGCCGTTGGAGAT 61.116 55.000 28.70 10.17 0.00 2.75
606 649 2.016393 TAGAGCGGCCGTTGGAGATG 62.016 60.000 28.70 0.00 0.00 2.90
609 652 2.892425 CGGCCGTTGGAGATGCTC 60.892 66.667 19.50 0.00 0.00 4.26
610 653 2.892425 GGCCGTTGGAGATGCTCG 60.892 66.667 0.00 0.00 0.00 5.03
611 654 2.184322 GCCGTTGGAGATGCTCGA 59.816 61.111 0.00 0.00 0.00 4.04
612 655 1.447838 GCCGTTGGAGATGCTCGAA 60.448 57.895 0.00 0.00 0.00 3.71
613 656 1.424493 GCCGTTGGAGATGCTCGAAG 61.424 60.000 0.00 0.00 29.48 3.79
614 657 0.173481 CCGTTGGAGATGCTCGAAGA 59.827 55.000 0.00 0.00 29.48 2.87
615 658 1.404181 CCGTTGGAGATGCTCGAAGAA 60.404 52.381 0.00 0.00 34.09 2.52
616 659 1.923204 CGTTGGAGATGCTCGAAGAAG 59.077 52.381 0.00 0.00 34.09 2.85
617 660 2.275318 GTTGGAGATGCTCGAAGAAGG 58.725 52.381 0.00 0.00 34.09 3.46
618 661 1.561643 TGGAGATGCTCGAAGAAGGT 58.438 50.000 0.00 0.00 34.09 3.50
619 662 1.205655 TGGAGATGCTCGAAGAAGGTG 59.794 52.381 0.00 0.00 34.09 4.00
620 663 1.478510 GGAGATGCTCGAAGAAGGTGA 59.521 52.381 0.00 0.00 34.09 4.02
621 664 2.093973 GGAGATGCTCGAAGAAGGTGAA 60.094 50.000 0.00 0.00 34.09 3.18
622 665 3.186119 GAGATGCTCGAAGAAGGTGAAG 58.814 50.000 0.00 0.00 34.09 3.02
623 666 2.564947 AGATGCTCGAAGAAGGTGAAGT 59.435 45.455 0.00 0.00 34.09 3.01
624 667 3.764434 AGATGCTCGAAGAAGGTGAAGTA 59.236 43.478 0.00 0.00 34.09 2.24
625 668 3.299340 TGCTCGAAGAAGGTGAAGTAC 57.701 47.619 0.00 0.00 34.09 2.73
626 669 2.891580 TGCTCGAAGAAGGTGAAGTACT 59.108 45.455 0.00 0.00 34.09 2.73
627 670 3.321111 TGCTCGAAGAAGGTGAAGTACTT 59.679 43.478 8.13 8.13 34.09 2.24
628 671 4.202223 TGCTCGAAGAAGGTGAAGTACTTT 60.202 41.667 10.02 0.00 34.09 2.66
629 672 4.750598 GCTCGAAGAAGGTGAAGTACTTTT 59.249 41.667 10.02 0.00 34.09 2.27
630 673 5.236695 GCTCGAAGAAGGTGAAGTACTTTTT 59.763 40.000 10.02 2.74 34.09 1.94
660 703 8.410673 TCTACATCATCTATTGAAGTACTCCC 57.589 38.462 0.00 0.00 37.46 4.30
661 704 8.228206 TCTACATCATCTATTGAAGTACTCCCT 58.772 37.037 0.00 0.00 37.46 4.20
662 705 7.296628 ACATCATCTATTGAAGTACTCCCTC 57.703 40.000 0.00 0.00 34.62 4.30
663 706 6.268847 ACATCATCTATTGAAGTACTCCCTCC 59.731 42.308 0.00 0.00 34.62 4.30
664 707 4.827835 TCATCTATTGAAGTACTCCCTCCG 59.172 45.833 0.00 0.00 0.00 4.63
665 708 4.246712 TCTATTGAAGTACTCCCTCCGT 57.753 45.455 0.00 0.00 0.00 4.69
666 709 4.607239 TCTATTGAAGTACTCCCTCCGTT 58.393 43.478 0.00 0.00 0.00 4.44
667 710 3.889520 ATTGAAGTACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
668 711 1.171308 TGAAGTACTCCCTCCGTTCG 58.829 55.000 0.00 0.00 0.00 3.95
669 712 0.455005 GAAGTACTCCCTCCGTTCGG 59.545 60.000 4.74 4.74 0.00 4.30
670 713 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
671 714 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
672 715 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
673 716 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
674 717 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
675 718 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
676 719 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
677 720 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
678 721 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
679 722 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
680 723 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
681 724 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
682 725 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
683 726 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
684 727 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
685 728 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
686 729 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
687 730 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
688 731 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
689 732 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
690 733 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
691 734 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
692 735 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
693 736 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
694 737 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
695 738 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
696 739 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
697 740 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
698 741 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
699 742 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
700 743 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
701 744 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
702 745 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
703 746 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
704 747 5.769367 TCGGAAATGGATGTATCTAGAACG 58.231 41.667 0.00 0.00 0.00 3.95
705 748 5.301045 TCGGAAATGGATGTATCTAGAACGT 59.699 40.000 0.00 0.00 0.00 3.99
706 749 5.629849 CGGAAATGGATGTATCTAGAACGTC 59.370 44.000 14.15 14.15 33.04 4.34
707 750 6.515200 CGGAAATGGATGTATCTAGAACGTCT 60.515 42.308 18.50 0.00 34.07 4.18
708 751 7.308408 CGGAAATGGATGTATCTAGAACGTCTA 60.308 40.741 18.50 15.53 34.07 2.59
709 752 8.024285 GGAAATGGATGTATCTAGAACGTCTAG 58.976 40.741 18.50 12.93 45.99 2.43
723 766 7.589958 AGAACGTCTAGATACATCCATTTCT 57.410 36.000 0.00 0.00 0.00 2.52
724 767 8.693120 AGAACGTCTAGATACATCCATTTCTA 57.307 34.615 0.00 0.00 0.00 2.10
725 768 8.569641 AGAACGTCTAGATACATCCATTTCTAC 58.430 37.037 0.00 0.00 0.00 2.59
726 769 6.900189 ACGTCTAGATACATCCATTTCTACG 58.100 40.000 0.00 0.00 0.00 3.51
727 770 6.709397 ACGTCTAGATACATCCATTTCTACGA 59.291 38.462 0.00 0.00 29.41 3.43
728 771 7.016466 CGTCTAGATACATCCATTTCTACGAC 58.984 42.308 0.00 0.00 0.00 4.34
729 772 7.307811 CGTCTAGATACATCCATTTCTACGACA 60.308 40.741 0.00 0.00 0.00 4.35
730 773 8.350722 GTCTAGATACATCCATTTCTACGACAA 58.649 37.037 0.00 0.00 0.00 3.18
731 774 8.568794 TCTAGATACATCCATTTCTACGACAAG 58.431 37.037 0.00 0.00 0.00 3.16
732 775 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
733 776 8.234136 AGATACATCCATTTCTACGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
734 777 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
735 778 9.477484 GATACATCCATTTCTACGACAAGTAAT 57.523 33.333 0.00 0.00 34.45 1.89
736 779 9.832445 ATACATCCATTTCTACGACAAGTAATT 57.168 29.630 0.00 0.00 34.45 1.40
737 780 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
738 781 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
739 782 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
740 783 5.808540 CCATTTCTACGACAAGTAATTCCGA 59.191 40.000 0.00 0.00 34.45 4.55
741 784 6.311935 CCATTTCTACGACAAGTAATTCCGAA 59.688 38.462 0.00 0.00 34.45 4.30
742 785 6.695292 TTTCTACGACAAGTAATTCCGAAC 57.305 37.500 0.00 0.00 34.45 3.95
743 786 5.375417 TCTACGACAAGTAATTCCGAACA 57.625 39.130 0.00 0.00 34.45 3.18
744 787 5.396484 TCTACGACAAGTAATTCCGAACAG 58.604 41.667 0.00 0.00 34.45 3.16
745 788 4.247267 ACGACAAGTAATTCCGAACAGA 57.753 40.909 0.00 0.00 0.00 3.41
746 789 4.624015 ACGACAAGTAATTCCGAACAGAA 58.376 39.130 0.00 0.00 0.00 3.02
747 790 4.684703 ACGACAAGTAATTCCGAACAGAAG 59.315 41.667 0.00 0.00 0.00 2.85
748 791 4.091509 CGACAAGTAATTCCGAACAGAAGG 59.908 45.833 0.00 0.00 0.00 3.46
749 792 5.223449 ACAAGTAATTCCGAACAGAAGGA 57.777 39.130 0.00 0.00 34.19 3.36
750 793 5.238583 ACAAGTAATTCCGAACAGAAGGAG 58.761 41.667 0.00 0.00 37.88 3.69
751 794 5.221661 ACAAGTAATTCCGAACAGAAGGAGT 60.222 40.000 0.00 0.00 37.88 3.85
752 795 6.014840 ACAAGTAATTCCGAACAGAAGGAGTA 60.015 38.462 0.00 0.00 37.88 2.59
753 796 6.210287 AGTAATTCCGAACAGAAGGAGTAG 57.790 41.667 0.00 0.00 37.88 2.57
754 797 5.715753 AGTAATTCCGAACAGAAGGAGTAGT 59.284 40.000 0.00 0.00 37.88 2.73
755 798 3.936372 TTCCGAACAGAAGGAGTAGTG 57.064 47.619 0.00 0.00 37.88 2.74
756 799 2.872732 TCCGAACAGAAGGAGTAGTGT 58.127 47.619 0.00 0.00 31.95 3.55
757 800 3.228453 TCCGAACAGAAGGAGTAGTGTT 58.772 45.455 0.00 0.00 35.84 3.32
758 801 3.640029 TCCGAACAGAAGGAGTAGTGTTT 59.360 43.478 0.00 0.00 33.30 2.83
759 802 4.100498 TCCGAACAGAAGGAGTAGTGTTTT 59.900 41.667 0.00 0.00 33.30 2.43
760 803 4.211374 CCGAACAGAAGGAGTAGTGTTTTG 59.789 45.833 0.00 0.00 33.30 2.44
761 804 4.211374 CGAACAGAAGGAGTAGTGTTTTGG 59.789 45.833 0.00 0.00 33.30 3.28
768 811 1.073284 GAGTAGTGTTTTGGGGCCTCA 59.927 52.381 0.00 0.00 0.00 3.86
769 812 1.710809 AGTAGTGTTTTGGGGCCTCAT 59.289 47.619 5.88 0.00 0.00 2.90
771 814 2.514458 AGTGTTTTGGGGCCTCATAG 57.486 50.000 5.88 0.00 0.00 2.23
773 816 2.582636 AGTGTTTTGGGGCCTCATAGAT 59.417 45.455 5.88 0.00 0.00 1.98
779 822 6.126332 TGTTTTGGGGCCTCATAGATGTATAA 60.126 38.462 5.88 0.00 0.00 0.98
784 827 6.790461 TGGGGCCTCATAGATGTATAAGTTAA 59.210 38.462 0.00 0.00 0.00 2.01
826 869 7.849804 TTTATTGGAGATGCTCTAACAACTC 57.150 36.000 0.00 0.00 38.39 3.01
827 870 3.510388 TGGAGATGCTCTAACAACTCG 57.490 47.619 0.00 0.00 39.61 4.18
843 886 5.349809 ACAACTCGGCTTTAATAGTAGAGC 58.650 41.667 4.26 4.26 36.85 4.09
850 893 6.427547 TCGGCTTTAATAGTAGAGCTAGAGAC 59.572 42.308 11.85 0.00 37.55 3.36
915 959 0.112412 AAGTAAAGGGGCACACCTGG 59.888 55.000 0.00 0.00 40.87 4.45
961 1005 0.240411 CCCTTCGTCTTCGTCTTCGT 59.760 55.000 0.00 0.00 38.33 3.85
962 1006 1.604396 CCTTCGTCTTCGTCTTCGTC 58.396 55.000 0.00 0.00 38.33 4.20
963 1007 1.197264 CCTTCGTCTTCGTCTTCGTCT 59.803 52.381 0.00 0.00 38.33 4.18
964 1008 2.350580 CCTTCGTCTTCGTCTTCGTCTT 60.351 50.000 0.00 0.00 38.33 3.01
965 1009 2.591066 TCGTCTTCGTCTTCGTCTTC 57.409 50.000 0.00 0.00 38.33 2.87
966 1010 1.136419 TCGTCTTCGTCTTCGTCTTCG 60.136 52.381 0.00 0.00 38.33 3.79
1081 1125 1.693062 CCCTCTCAGATCCCATCACTG 59.307 57.143 0.00 0.00 0.00 3.66
1085 1129 1.150081 CAGATCCCATCACTGCCCC 59.850 63.158 0.00 0.00 0.00 5.80
1090 1134 2.825836 CCATCACTGCCCCGCTTC 60.826 66.667 0.00 0.00 0.00 3.86
1092 1136 1.522092 CATCACTGCCCCGCTTCTA 59.478 57.895 0.00 0.00 0.00 2.10
1101 1145 1.066358 GCCCCGCTTCTACTACAGTTT 60.066 52.381 0.00 0.00 0.00 2.66
1104 1148 3.429135 CCCCGCTTCTACTACAGTTTCTC 60.429 52.174 0.00 0.00 0.00 2.87
1107 1151 5.096849 CCGCTTCTACTACAGTTTCTCTTC 58.903 45.833 0.00 0.00 0.00 2.87
1111 1155 6.128227 GCTTCTACTACAGTTTCTCTTCTCGA 60.128 42.308 0.00 0.00 0.00 4.04
1117 1161 7.434492 ACTACAGTTTCTCTTCTCGATTTTCA 58.566 34.615 0.00 0.00 0.00 2.69
1129 1173 4.278419 TCTCGATTTTCATCAGCGATCCTA 59.722 41.667 0.00 0.00 0.00 2.94
1253 1297 2.441001 CACTAGGGCATCTGGATCCTTT 59.559 50.000 14.23 0.00 0.00 3.11
1256 1300 0.468771 GGGCATCTGGATCCTTTGGG 60.469 60.000 14.23 0.00 0.00 4.12
1257 1301 0.259938 GGCATCTGGATCCTTTGGGT 59.740 55.000 14.23 0.00 0.00 4.51
1290 1334 4.980573 TGTTGCTGGATGGGGTATATTAC 58.019 43.478 0.00 0.00 0.00 1.89
1303 1349 5.995897 GGGGTATATTACAGCTTCGTGAAAT 59.004 40.000 0.00 0.00 0.00 2.17
1356 1402 8.975439 CAGGCTCAATATTGCAAAAATCTTATC 58.025 33.333 10.76 0.00 0.00 1.75
1446 1492 5.242434 ACTGAACAAATACAAGTATCGGCA 58.758 37.500 0.00 0.00 0.00 5.69
1474 1520 3.009115 ACTGGGTCCGATGGTGGG 61.009 66.667 0.00 0.00 0.00 4.61
1531 1577 7.721286 AATGAAAGAATCCATCGACTATCAC 57.279 36.000 0.00 0.00 0.00 3.06
1532 1578 5.601662 TGAAAGAATCCATCGACTATCACC 58.398 41.667 0.00 0.00 0.00 4.02
1533 1579 5.363868 TGAAAGAATCCATCGACTATCACCT 59.636 40.000 0.00 0.00 0.00 4.00
1534 1580 6.549736 TGAAAGAATCCATCGACTATCACCTA 59.450 38.462 0.00 0.00 0.00 3.08
1535 1581 5.968528 AGAATCCATCGACTATCACCTAC 57.031 43.478 0.00 0.00 0.00 3.18
1536 1582 5.636123 AGAATCCATCGACTATCACCTACT 58.364 41.667 0.00 0.00 0.00 2.57
1537 1583 5.708230 AGAATCCATCGACTATCACCTACTC 59.292 44.000 0.00 0.00 0.00 2.59
1538 1584 3.752665 TCCATCGACTATCACCTACTCC 58.247 50.000 0.00 0.00 0.00 3.85
1542 1588 1.133575 CGACTATCACCTACTCCCCCA 60.134 57.143 0.00 0.00 0.00 4.96
1603 1650 5.824624 AGGATGTAGATGCATTTTAGTGTGG 59.175 40.000 0.00 0.00 0.00 4.17
1731 1783 6.216801 TCATACCGCTCTTACATTGTTACT 57.783 37.500 0.00 0.00 0.00 2.24
1732 1784 6.040247 TCATACCGCTCTTACATTGTTACTG 58.960 40.000 0.00 0.00 0.00 2.74
1733 1785 3.596214 ACCGCTCTTACATTGTTACTGG 58.404 45.455 0.00 0.00 0.00 4.00
1734 1786 3.259876 ACCGCTCTTACATTGTTACTGGA 59.740 43.478 0.00 0.00 0.00 3.86
1735 1787 3.865745 CCGCTCTTACATTGTTACTGGAG 59.134 47.826 0.00 0.00 0.00 3.86
1736 1788 3.865745 CGCTCTTACATTGTTACTGGAGG 59.134 47.826 0.00 0.00 0.00 4.30
1737 1789 4.192317 GCTCTTACATTGTTACTGGAGGG 58.808 47.826 0.00 0.00 0.00 4.30
1910 1962 3.173151 TCAGTATCTTCAGACAGGCCAA 58.827 45.455 5.01 0.00 0.00 4.52
1995 2047 4.630644 TCTTCTCCTTCATGCAGTTCTT 57.369 40.909 0.00 0.00 0.00 2.52
1996 2048 4.978099 TCTTCTCCTTCATGCAGTTCTTT 58.022 39.130 0.00 0.00 0.00 2.52
2140 2192 5.448632 GCCCAAAAGTAGGTCGTGATTTATG 60.449 44.000 0.00 0.00 0.00 1.90
2155 2207 9.261180 TCGTGATTTATGAAATCTGATCTTACC 57.739 33.333 11.97 0.00 45.85 2.85
2437 2492 7.722363 TCGCACAGTAAGATCTCCAATATAAA 58.278 34.615 0.00 0.00 0.00 1.40
2503 2563 5.177881 TGTGCAATTTCACAATTTGAGCATC 59.822 36.000 8.53 0.00 43.27 3.91
2735 2795 5.820131 TGTGCTGTTTCATAAGTGAGTTTG 58.180 37.500 0.00 0.00 35.39 2.93
2802 2863 2.156917 TGCTGGAAGAACTGCTCATTG 58.843 47.619 0.00 0.00 34.07 2.82
2812 2873 5.798132 AGAACTGCTCATTGTAACATCTCA 58.202 37.500 0.00 0.00 0.00 3.27
2824 2885 4.929211 TGTAACATCTCAATGGACTTGACG 59.071 41.667 0.00 0.00 38.97 4.35
2878 2940 8.342634 GCTCACTAGTGTTTCAGTTGAATTAAA 58.657 33.333 21.99 0.00 33.54 1.52
3011 3075 2.340078 GACTGCACGCTCCACAGA 59.660 61.111 0.00 0.00 35.38 3.41
3059 3123 4.333913 TGCATTATGTTGTGCACCTTTT 57.666 36.364 15.69 0.00 45.60 2.27
3093 3161 9.843334 CTATATCTTGTAACTATTCCCTTCGTC 57.157 37.037 0.00 0.00 0.00 4.20
3123 3191 1.139498 TGGTCCCATCCTTGCCTCAA 61.139 55.000 0.00 0.00 0.00 3.02
3146 3214 3.406764 AGTCCTTGTTCACAGAAGATGC 58.593 45.455 0.00 0.00 0.00 3.91
3157 3225 6.670695 TCACAGAAGATGCCTATTGCTATA 57.329 37.500 0.00 0.00 42.00 1.31
3160 3411 8.253810 TCACAGAAGATGCCTATTGCTATATAC 58.746 37.037 0.00 0.00 42.00 1.47
3161 3412 8.256605 CACAGAAGATGCCTATTGCTATATACT 58.743 37.037 0.00 0.00 42.00 2.12
3162 3413 8.474025 ACAGAAGATGCCTATTGCTATATACTC 58.526 37.037 0.00 0.00 42.00 2.59
3163 3414 7.925483 CAGAAGATGCCTATTGCTATATACTCC 59.075 40.741 0.00 0.00 42.00 3.85
3164 3415 6.739331 AGATGCCTATTGCTATATACTCCC 57.261 41.667 0.00 0.00 42.00 4.30
3165 3416 6.448202 AGATGCCTATTGCTATATACTCCCT 58.552 40.000 0.00 0.00 42.00 4.20
3166 3417 6.553100 AGATGCCTATTGCTATATACTCCCTC 59.447 42.308 0.00 0.00 42.00 4.30
3167 3418 5.843469 TGCCTATTGCTATATACTCCCTCT 58.157 41.667 0.00 0.00 42.00 3.69
3168 3419 5.658634 TGCCTATTGCTATATACTCCCTCTG 59.341 44.000 0.00 0.00 42.00 3.35
3169 3420 5.659079 GCCTATTGCTATATACTCCCTCTGT 59.341 44.000 0.00 0.00 36.87 3.41
3170 3421 6.834451 GCCTATTGCTATATACTCCCTCTGTA 59.166 42.308 0.00 0.00 36.87 2.74
3171 3422 7.342284 GCCTATTGCTATATACTCCCTCTGTAA 59.658 40.741 0.00 0.00 36.87 2.41
3172 3423 9.256228 CCTATTGCTATATACTCCCTCTGTAAA 57.744 37.037 0.00 0.00 0.00 2.01
3174 3425 8.728596 ATTGCTATATACTCCCTCTGTAAACT 57.271 34.615 0.00 0.00 0.00 2.66
3175 3426 9.824216 ATTGCTATATACTCCCTCTGTAAACTA 57.176 33.333 0.00 0.00 0.00 2.24
3176 3427 9.650714 TTGCTATATACTCCCTCTGTAAACTAA 57.349 33.333 0.00 0.00 0.00 2.24
3177 3428 9.650714 TGCTATATACTCCCTCTGTAAACTAAA 57.349 33.333 0.00 0.00 0.00 1.85
3186 3437 9.699703 CTCCCTCTGTAAACTAAATATAAGAGC 57.300 37.037 0.00 0.00 0.00 4.09
3187 3438 8.358148 TCCCTCTGTAAACTAAATATAAGAGCG 58.642 37.037 0.00 0.00 0.00 5.03
3188 3439 8.142551 CCCTCTGTAAACTAAATATAAGAGCGT 58.857 37.037 0.00 0.00 0.00 5.07
3189 3440 9.530633 CCTCTGTAAACTAAATATAAGAGCGTT 57.469 33.333 0.00 0.00 0.00 4.84
3205 3456 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
3206 3457 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
3207 3458 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
3208 3459 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
3209 3460 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
3210 3461 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
3211 3462 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
3250 3501 8.921353 TTAGTTTACTGAGTGAGTAGAAGTCT 57.079 34.615 0.00 0.00 38.45 3.24
3252 3503 8.556213 AGTTTACTGAGTGAGTAGAAGTCTAG 57.444 38.462 0.00 0.00 38.45 2.43
3253 3504 8.158789 AGTTTACTGAGTGAGTAGAAGTCTAGT 58.841 37.037 0.00 0.00 38.45 2.57
3254 3505 9.434420 GTTTACTGAGTGAGTAGAAGTCTAGTA 57.566 37.037 0.00 0.00 38.45 1.82
3317 3568 6.154877 TGAGGGTTTACGGACATAATGTCTTA 59.845 38.462 0.00 0.00 46.19 2.10
3329 3580 7.857885 GGACATAATGTCTTAATGCTACAAAGC 59.142 37.037 0.00 0.00 46.19 3.51
3354 3605 2.561478 GGTTGCTTACCTGGAAGACA 57.439 50.000 0.00 0.68 44.10 3.41
3364 3617 2.656947 CTGGAAGACAGGGGAAAACA 57.343 50.000 0.00 0.00 43.70 2.83
3365 3618 3.160679 CTGGAAGACAGGGGAAAACAT 57.839 47.619 0.00 0.00 43.70 2.71
3395 3648 7.801893 TTTGAAACTAGACTAGGGGAATACA 57.198 36.000 14.03 2.12 0.00 2.29
3396 3649 7.989947 TTGAAACTAGACTAGGGGAATACAT 57.010 36.000 14.03 0.00 0.00 2.29
3397 3650 7.989947 TGAAACTAGACTAGGGGAATACATT 57.010 36.000 14.03 0.00 0.00 2.71
3398 3651 8.388656 TGAAACTAGACTAGGGGAATACATTT 57.611 34.615 14.03 2.16 0.00 2.32
3399 3652 8.832735 TGAAACTAGACTAGGGGAATACATTTT 58.167 33.333 14.03 1.49 0.00 1.82
3400 3653 9.110502 GAAACTAGACTAGGGGAATACATTTTG 57.889 37.037 14.03 0.00 0.00 2.44
3401 3654 7.989947 ACTAGACTAGGGGAATACATTTTGA 57.010 36.000 14.03 0.00 0.00 2.69
3409 3662 5.047590 AGGGGAATACATTTTGAAACGGTTC 60.048 40.000 6.16 6.16 0.00 3.62
3475 3729 4.010349 GTCACAGACCCCTCAAAAATAGG 58.990 47.826 0.00 0.00 0.00 2.57
3490 3744 9.415544 CTCAAAAATAGGAACAAAGAAATCAGG 57.584 33.333 0.00 0.00 0.00 3.86
3501 3755 9.764363 GAACAAAGAAATCAGGGAACTTATTTT 57.236 29.630 0.00 0.00 42.71 1.82
3534 3788 3.760580 ATGCCTACAGTTAGCTCATCC 57.239 47.619 0.00 0.00 0.00 3.51
3540 3794 4.806247 CCTACAGTTAGCTCATCCGAAAAG 59.194 45.833 0.00 0.00 0.00 2.27
3541 3795 4.537135 ACAGTTAGCTCATCCGAAAAGA 57.463 40.909 0.00 0.00 0.00 2.52
3587 3841 2.026542 TGCTTGTCTGCAGGATGATTCT 60.027 45.455 15.13 0.00 39.69 2.40
3618 3872 2.736531 GCCAAGGCCAAACACCTG 59.263 61.111 5.01 0.00 37.67 4.00
3630 3884 1.251251 AACACCTGCAATTGAGAGCC 58.749 50.000 10.34 0.00 0.00 4.70
3695 3949 4.103365 TGTCAACGACACAAGCAAAAAT 57.897 36.364 0.00 0.00 37.67 1.82
3697 3951 5.270083 TGTCAACGACACAAGCAAAAATAG 58.730 37.500 0.00 0.00 37.67 1.73
3833 4087 3.129502 CCAGGCTCGTCGGACGTA 61.130 66.667 27.53 14.73 43.14 3.57
3983 4237 1.310933 ACGACTCGCCGTCATAACCT 61.311 55.000 0.00 0.00 42.98 3.50
3984 4238 0.659427 CGACTCGCCGTCATAACCTA 59.341 55.000 5.70 0.00 42.98 3.08
4028 4287 7.225784 TGCATAACAATTATGTGTGTTCCTT 57.774 32.000 9.65 0.00 43.81 3.36
4057 4316 2.151202 CGTTCCTTGGTTGCATGTACT 58.849 47.619 0.00 0.00 0.00 2.73
4064 4323 5.830991 TCCTTGGTTGCATGTACTACTTTTT 59.169 36.000 0.00 0.00 0.00 1.94
4100 4359 9.499479 CCATGAATTTTAGTAGATCATAGCAGT 57.501 33.333 0.00 0.00 0.00 4.40
4102 4361 8.893219 TGAATTTTAGTAGATCATAGCAGTGG 57.107 34.615 0.00 0.00 0.00 4.00
4103 4362 8.486210 TGAATTTTAGTAGATCATAGCAGTGGT 58.514 33.333 0.00 0.00 0.00 4.16
4104 4363 8.668510 AATTTTAGTAGATCATAGCAGTGGTG 57.331 34.615 4.76 0.00 0.00 4.17
4105 4364 7.418337 TTTTAGTAGATCATAGCAGTGGTGA 57.582 36.000 4.76 0.00 0.00 4.02
4106 4365 4.927978 AGTAGATCATAGCAGTGGTGAC 57.072 45.455 4.76 0.00 0.00 3.67
4123 4383 3.244422 GGTGACTGGTGAGAACCAATGTA 60.244 47.826 0.00 0.00 39.61 2.29
4148 4408 2.029844 GTCTGCAGCACGAAGGACC 61.030 63.158 9.47 0.00 0.00 4.46
4176 4438 2.411904 GCTCCTGTCACAAAGTCTCTG 58.588 52.381 0.00 0.00 0.00 3.35
4428 4736 3.214123 CGTCATGGGGCAGCCATG 61.214 66.667 15.19 14.53 44.34 3.66
4443 4751 1.375140 CATGTCAGCGACACCAGCT 60.375 57.895 12.43 0.00 45.65 4.24
4928 5319 2.041686 GCCTCTCTCACCGACGTCT 61.042 63.158 14.70 0.00 0.00 4.18
4929 5320 1.797441 CCTCTCTCACCGACGTCTG 59.203 63.158 14.70 9.99 0.00 3.51
4930 5321 0.673956 CCTCTCTCACCGACGTCTGA 60.674 60.000 14.31 10.44 0.00 3.27
4931 5322 0.724549 CTCTCTCACCGACGTCTGAG 59.275 60.000 22.47 22.47 36.07 3.35
4932 5323 1.135731 CTCTCACCGACGTCTGAGC 59.864 63.158 23.27 0.00 34.92 4.26
4933 5324 2.202362 CTCACCGACGTCTGAGCG 60.202 66.667 18.47 4.42 37.94 5.03
4934 5325 4.400109 TCACCGACGTCTGAGCGC 62.400 66.667 14.31 0.00 34.88 5.92
4935 5326 4.406173 CACCGACGTCTGAGCGCT 62.406 66.667 11.27 11.27 34.88 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 102 1.374758 CGCGGAGAAGAACAAGGCT 60.375 57.895 0.00 0.00 0.00 4.58
138 146 2.237143 TCTCGAAGCTCCCAAATGATGT 59.763 45.455 0.00 0.00 0.00 3.06
140 148 2.739932 CGTCTCGAAGCTCCCAAATGAT 60.740 50.000 0.00 0.00 0.00 2.45
141 149 1.404181 CGTCTCGAAGCTCCCAAATGA 60.404 52.381 0.00 0.00 0.00 2.57
160 168 2.040544 GTGAAGCCACATGTCCCCG 61.041 63.158 0.00 0.00 42.72 5.73
165 174 3.049674 CGCCGTGAAGCCACATGT 61.050 61.111 0.00 0.00 43.34 3.21
332 361 2.472029 CTCACCCCTTCCTACAGTCAT 58.528 52.381 0.00 0.00 0.00 3.06
335 364 0.252742 CCCTCACCCCTTCCTACAGT 60.253 60.000 0.00 0.00 0.00 3.55
560 603 0.461339 ACCGCGCTGGATATTTTCGT 60.461 50.000 22.10 0.00 42.00 3.85
579 622 1.254026 ACGGCCGCTCTATATAAGCA 58.746 50.000 28.58 0.00 39.81 3.91
586 629 1.115930 ATCTCCAACGGCCGCTCTAT 61.116 55.000 28.58 8.86 0.00 1.98
588 631 3.077556 ATCTCCAACGGCCGCTCT 61.078 61.111 28.58 7.20 0.00 4.09
589 632 2.892425 CATCTCCAACGGCCGCTC 60.892 66.667 28.58 0.00 0.00 5.03
592 635 2.892425 GAGCATCTCCAACGGCCG 60.892 66.667 26.86 26.86 0.00 6.13
593 636 2.852495 TTCGAGCATCTCCAACGGCC 62.852 60.000 0.00 0.00 0.00 6.13
594 637 1.424493 CTTCGAGCATCTCCAACGGC 61.424 60.000 0.00 0.00 0.00 5.68
595 638 0.173481 TCTTCGAGCATCTCCAACGG 59.827 55.000 0.00 0.00 0.00 4.44
596 639 1.923204 CTTCTTCGAGCATCTCCAACG 59.077 52.381 0.00 0.00 0.00 4.10
597 640 2.275318 CCTTCTTCGAGCATCTCCAAC 58.725 52.381 0.00 0.00 0.00 3.77
598 641 1.902508 ACCTTCTTCGAGCATCTCCAA 59.097 47.619 0.00 0.00 0.00 3.53
599 642 1.205655 CACCTTCTTCGAGCATCTCCA 59.794 52.381 0.00 0.00 0.00 3.86
600 643 1.478510 TCACCTTCTTCGAGCATCTCC 59.521 52.381 0.00 0.00 0.00 3.71
601 644 2.949451 TCACCTTCTTCGAGCATCTC 57.051 50.000 0.00 0.00 0.00 2.75
602 645 2.564947 ACTTCACCTTCTTCGAGCATCT 59.435 45.455 0.00 0.00 0.00 2.90
603 646 2.966050 ACTTCACCTTCTTCGAGCATC 58.034 47.619 0.00 0.00 0.00 3.91
604 647 3.511934 AGTACTTCACCTTCTTCGAGCAT 59.488 43.478 0.00 0.00 0.00 3.79
605 648 2.891580 AGTACTTCACCTTCTTCGAGCA 59.108 45.455 0.00 0.00 0.00 4.26
606 649 3.579335 AGTACTTCACCTTCTTCGAGC 57.421 47.619 0.00 0.00 0.00 5.03
607 650 6.846325 AAAAAGTACTTCACCTTCTTCGAG 57.154 37.500 8.95 0.00 0.00 4.04
634 677 9.030452 GGGAGTACTTCAATAGATGATGTAGAT 57.970 37.037 2.92 0.00 44.63 1.98
635 678 8.228206 AGGGAGTACTTCAATAGATGATGTAGA 58.772 37.037 2.92 0.00 44.63 2.59
636 679 8.415950 AGGGAGTACTTCAATAGATGATGTAG 57.584 38.462 2.92 0.00 44.63 2.74
637 680 7.451877 GGAGGGAGTACTTCAATAGATGATGTA 59.548 40.741 2.92 1.44 42.73 2.29
638 681 6.268847 GGAGGGAGTACTTCAATAGATGATGT 59.731 42.308 2.92 3.07 45.44 3.06
639 682 6.571344 CGGAGGGAGTACTTCAATAGATGATG 60.571 46.154 2.92 0.00 38.03 3.07
640 683 5.478679 CGGAGGGAGTACTTCAATAGATGAT 59.521 44.000 2.92 0.00 38.03 2.45
641 684 4.827835 CGGAGGGAGTACTTCAATAGATGA 59.172 45.833 2.92 0.00 35.85 2.92
642 685 4.585162 ACGGAGGGAGTACTTCAATAGATG 59.415 45.833 2.92 0.00 0.00 2.90
643 686 4.805744 ACGGAGGGAGTACTTCAATAGAT 58.194 43.478 2.92 0.00 0.00 1.98
644 687 4.246712 ACGGAGGGAGTACTTCAATAGA 57.753 45.455 2.92 0.00 0.00 1.98
645 688 4.497674 CGAACGGAGGGAGTACTTCAATAG 60.498 50.000 2.92 0.00 0.00 1.73
646 689 3.379372 CGAACGGAGGGAGTACTTCAATA 59.621 47.826 2.92 0.00 0.00 1.90
647 690 2.165845 CGAACGGAGGGAGTACTTCAAT 59.834 50.000 2.92 0.00 0.00 2.57
648 691 1.542915 CGAACGGAGGGAGTACTTCAA 59.457 52.381 2.92 0.00 0.00 2.69
649 692 1.171308 CGAACGGAGGGAGTACTTCA 58.829 55.000 2.92 0.00 0.00 3.02
650 693 0.455005 CCGAACGGAGGGAGTACTTC 59.545 60.000 7.53 0.00 37.50 3.01
651 694 0.038744 TCCGAACGGAGGGAGTACTT 59.961 55.000 12.04 0.00 39.76 2.24
652 695 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.00 46.06 2.73
653 696 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
654 697 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
655 698 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
656 699 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
657 700 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
658 701 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
659 702 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
660 703 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
661 704 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
662 705 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
663 706 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
664 707 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
665 708 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
666 709 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
667 710 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
668 711 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
669 712 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
670 713 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
671 714 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
672 715 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
673 716 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
674 717 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
675 718 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
676 719 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
677 720 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
678 721 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
679 722 6.294010 CGTTCTAGATACATCCATTTCCGAGA 60.294 42.308 0.00 0.00 0.00 4.04
680 723 5.859114 CGTTCTAGATACATCCATTTCCGAG 59.141 44.000 0.00 0.00 0.00 4.63
681 724 5.301045 ACGTTCTAGATACATCCATTTCCGA 59.699 40.000 0.00 0.00 0.00 4.55
682 725 5.529791 ACGTTCTAGATACATCCATTTCCG 58.470 41.667 0.00 0.00 0.00 4.30
683 726 6.750148 AGACGTTCTAGATACATCCATTTCC 58.250 40.000 0.00 0.00 0.00 3.13
697 740 8.788806 AGAAATGGATGTATCTAGACGTTCTAG 58.211 37.037 12.93 12.93 45.99 2.43
698 741 8.693120 AGAAATGGATGTATCTAGACGTTCTA 57.307 34.615 0.00 0.00 0.00 2.10
699 742 7.589958 AGAAATGGATGTATCTAGACGTTCT 57.410 36.000 0.00 0.00 0.00 3.01
700 743 7.534578 CGTAGAAATGGATGTATCTAGACGTTC 59.465 40.741 0.00 0.00 0.00 3.95
701 744 7.228108 TCGTAGAAATGGATGTATCTAGACGTT 59.772 37.037 0.00 0.00 0.00 3.99
702 745 6.709397 TCGTAGAAATGGATGTATCTAGACGT 59.291 38.462 0.00 0.00 0.00 4.34
703 746 7.016466 GTCGTAGAAATGGATGTATCTAGACG 58.984 42.308 0.00 0.00 39.69 4.18
704 747 7.872881 TGTCGTAGAAATGGATGTATCTAGAC 58.127 38.462 0.00 0.00 39.69 2.59
705 748 8.459911 TTGTCGTAGAAATGGATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
706 749 8.353684 ACTTGTCGTAGAAATGGATGTATCTAG 58.646 37.037 0.00 0.00 39.69 2.43
707 750 8.234136 ACTTGTCGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
708 751 7.113658 ACTTGTCGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
709 752 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
710 753 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
711 754 9.309516 GAATTACTTGTCGTAGAAATGGATGTA 57.690 33.333 0.00 0.00 39.69 2.29
712 755 7.280205 GGAATTACTTGTCGTAGAAATGGATGT 59.720 37.037 0.00 0.00 39.69 3.06
713 756 7.516785 CGGAATTACTTGTCGTAGAAATGGATG 60.517 40.741 0.00 0.00 39.69 3.51
714 757 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
715 758 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
716 759 5.808540 TCGGAATTACTTGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
717 760 6.880822 TCGGAATTACTTGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
718 761 6.869913 TGTTCGGAATTACTTGTCGTAGAAAT 59.130 34.615 0.00 0.00 39.69 2.17
719 762 6.215121 TGTTCGGAATTACTTGTCGTAGAAA 58.785 36.000 0.00 0.00 39.69 2.52
720 763 5.771469 TGTTCGGAATTACTTGTCGTAGAA 58.229 37.500 0.00 0.00 39.69 2.10
721 764 5.181811 TCTGTTCGGAATTACTTGTCGTAGA 59.818 40.000 0.00 0.00 0.00 2.59
722 765 5.396484 TCTGTTCGGAATTACTTGTCGTAG 58.604 41.667 0.00 0.00 0.00 3.51
723 766 5.375417 TCTGTTCGGAATTACTTGTCGTA 57.625 39.130 0.00 0.00 0.00 3.43
724 767 4.247267 TCTGTTCGGAATTACTTGTCGT 57.753 40.909 0.00 0.00 0.00 4.34
725 768 4.091509 CCTTCTGTTCGGAATTACTTGTCG 59.908 45.833 0.00 0.00 0.00 4.35
726 769 5.235516 TCCTTCTGTTCGGAATTACTTGTC 58.764 41.667 0.00 0.00 0.00 3.18
727 770 5.221661 ACTCCTTCTGTTCGGAATTACTTGT 60.222 40.000 0.00 0.00 0.00 3.16
728 771 5.238583 ACTCCTTCTGTTCGGAATTACTTG 58.761 41.667 0.00 0.00 0.00 3.16
729 772 5.485209 ACTCCTTCTGTTCGGAATTACTT 57.515 39.130 0.00 0.00 0.00 2.24
730 773 5.715753 ACTACTCCTTCTGTTCGGAATTACT 59.284 40.000 0.00 0.00 0.00 2.24
731 774 5.805994 CACTACTCCTTCTGTTCGGAATTAC 59.194 44.000 0.00 0.00 0.00 1.89
732 775 5.479375 ACACTACTCCTTCTGTTCGGAATTA 59.521 40.000 0.00 0.00 0.00 1.40
733 776 4.283722 ACACTACTCCTTCTGTTCGGAATT 59.716 41.667 0.00 0.00 0.00 2.17
734 777 3.833070 ACACTACTCCTTCTGTTCGGAAT 59.167 43.478 0.00 0.00 0.00 3.01
735 778 3.228453 ACACTACTCCTTCTGTTCGGAA 58.772 45.455 0.00 0.00 0.00 4.30
736 779 2.872732 ACACTACTCCTTCTGTTCGGA 58.127 47.619 0.00 0.00 0.00 4.55
737 780 3.662247 AACACTACTCCTTCTGTTCGG 57.338 47.619 0.00 0.00 0.00 4.30
738 781 4.211374 CCAAAACACTACTCCTTCTGTTCG 59.789 45.833 0.00 0.00 0.00 3.95
739 782 4.515567 CCCAAAACACTACTCCTTCTGTTC 59.484 45.833 0.00 0.00 0.00 3.18
740 783 4.461198 CCCAAAACACTACTCCTTCTGTT 58.539 43.478 0.00 0.00 0.00 3.16
741 784 3.181443 CCCCAAAACACTACTCCTTCTGT 60.181 47.826 0.00 0.00 0.00 3.41
742 785 3.412386 CCCCAAAACACTACTCCTTCTG 58.588 50.000 0.00 0.00 0.00 3.02
743 786 2.224793 GCCCCAAAACACTACTCCTTCT 60.225 50.000 0.00 0.00 0.00 2.85
744 787 2.160205 GCCCCAAAACACTACTCCTTC 58.840 52.381 0.00 0.00 0.00 3.46
745 788 1.203013 GGCCCCAAAACACTACTCCTT 60.203 52.381 0.00 0.00 0.00 3.36
746 789 0.404426 GGCCCCAAAACACTACTCCT 59.596 55.000 0.00 0.00 0.00 3.69
747 790 0.404426 AGGCCCCAAAACACTACTCC 59.596 55.000 0.00 0.00 0.00 3.85
748 791 1.073284 TGAGGCCCCAAAACACTACTC 59.927 52.381 0.00 0.00 0.00 2.59
749 792 1.145571 TGAGGCCCCAAAACACTACT 58.854 50.000 0.00 0.00 0.00 2.57
750 793 2.215942 ATGAGGCCCCAAAACACTAC 57.784 50.000 0.00 0.00 0.00 2.73
751 794 3.186283 TCTATGAGGCCCCAAAACACTA 58.814 45.455 0.00 0.00 0.00 2.74
752 795 1.992557 TCTATGAGGCCCCAAAACACT 59.007 47.619 0.00 0.00 0.00 3.55
753 796 2.507407 TCTATGAGGCCCCAAAACAC 57.493 50.000 0.00 0.00 0.00 3.32
754 797 2.311542 ACATCTATGAGGCCCCAAAACA 59.688 45.455 0.00 0.00 0.00 2.83
755 798 3.018423 ACATCTATGAGGCCCCAAAAC 57.982 47.619 0.00 0.00 0.00 2.43
756 799 6.102615 ACTTATACATCTATGAGGCCCCAAAA 59.897 38.462 0.00 0.00 0.00 2.44
757 800 5.610982 ACTTATACATCTATGAGGCCCCAAA 59.389 40.000 0.00 0.00 0.00 3.28
758 801 5.162637 ACTTATACATCTATGAGGCCCCAA 58.837 41.667 0.00 0.00 0.00 4.12
759 802 4.763355 ACTTATACATCTATGAGGCCCCA 58.237 43.478 0.00 0.00 0.00 4.96
760 803 5.763876 AACTTATACATCTATGAGGCCCC 57.236 43.478 0.00 0.00 0.00 5.80
811 854 2.301577 AGCCGAGTTGTTAGAGCATC 57.698 50.000 0.00 0.00 0.00 3.91
812 855 2.770164 AAGCCGAGTTGTTAGAGCAT 57.230 45.000 0.00 0.00 0.00 3.79
820 863 5.127356 AGCTCTACTATTAAAGCCGAGTTGT 59.873 40.000 0.00 0.00 35.32 3.32
822 865 5.855740 AGCTCTACTATTAAAGCCGAGTT 57.144 39.130 0.00 0.00 35.32 3.01
826 869 6.604930 GTCTCTAGCTCTACTATTAAAGCCG 58.395 44.000 0.00 0.00 35.32 5.52
827 870 6.348704 CCGTCTCTAGCTCTACTATTAAAGCC 60.349 46.154 0.00 0.00 35.32 4.35
895 939 1.353022 CCAGGTGTGCCCCTTTACTTA 59.647 52.381 0.00 0.00 34.57 2.24
915 959 6.663944 AGAAAGCTGTTCCGTGTATATTTC 57.336 37.500 0.00 0.00 0.00 2.17
961 1005 3.691342 CACCTGACCCGGCGAAGA 61.691 66.667 9.30 0.00 0.00 2.87
962 1006 4.760047 CCACCTGACCCGGCGAAG 62.760 72.222 9.30 0.92 0.00 3.79
965 1009 4.530857 GATCCACCTGACCCGGCG 62.531 72.222 0.00 0.00 0.00 6.46
966 1010 3.391665 CTGATCCACCTGACCCGGC 62.392 68.421 0.00 0.00 0.00 6.13
1081 1125 0.535797 AACTGTAGTAGAAGCGGGGC 59.464 55.000 0.00 0.00 0.00 5.80
1085 1129 5.945155 AGAAGAGAAACTGTAGTAGAAGCG 58.055 41.667 0.00 0.00 0.00 4.68
1090 1134 8.973835 AAAATCGAGAAGAGAAACTGTAGTAG 57.026 34.615 0.00 0.00 0.00 2.57
1092 1136 7.434492 TGAAAATCGAGAAGAGAAACTGTAGT 58.566 34.615 0.00 0.00 0.00 2.73
1101 1145 4.108336 CGCTGATGAAAATCGAGAAGAGA 58.892 43.478 0.00 0.00 0.00 3.10
1104 1148 4.084641 GGATCGCTGATGAAAATCGAGAAG 60.085 45.833 0.00 0.00 32.50 2.85
1107 1151 3.388308 AGGATCGCTGATGAAAATCGAG 58.612 45.455 0.00 0.00 32.50 4.04
1111 1155 5.296151 TCCTTAGGATCGCTGATGAAAAT 57.704 39.130 0.00 0.00 0.00 1.82
1129 1173 2.125269 CGAAACCGGCCGATCCTT 60.125 61.111 30.73 13.81 0.00 3.36
1139 1183 4.116961 TCCTAATAATCACAGCGAAACCG 58.883 43.478 0.00 0.00 0.00 4.44
1253 1297 2.158534 AGCAACAGTAATTCACCACCCA 60.159 45.455 0.00 0.00 0.00 4.51
1256 1300 3.146066 TCCAGCAACAGTAATTCACCAC 58.854 45.455 0.00 0.00 0.00 4.16
1257 1301 3.500448 TCCAGCAACAGTAATTCACCA 57.500 42.857 0.00 0.00 0.00 4.17
1290 1334 5.051508 CCACTTCAAAAATTTCACGAAGCTG 60.052 40.000 17.52 14.97 37.24 4.24
1303 1349 6.968263 TGGATCATGTTACCACTTCAAAAA 57.032 33.333 0.00 0.00 0.00 1.94
1466 1512 2.825532 ACTGTTATGCAAACCCACCATC 59.174 45.455 0.00 0.00 0.00 3.51
1531 1577 7.678598 TCTTATAATAGTGAATGGGGGAGTAGG 59.321 40.741 0.00 0.00 0.00 3.18
1532 1578 8.666129 TCTTATAATAGTGAATGGGGGAGTAG 57.334 38.462 0.00 0.00 0.00 2.57
1533 1579 9.046846 CATCTTATAATAGTGAATGGGGGAGTA 57.953 37.037 0.00 0.00 0.00 2.59
1534 1580 7.517604 ACATCTTATAATAGTGAATGGGGGAGT 59.482 37.037 0.00 0.00 0.00 3.85
1535 1581 7.922382 ACATCTTATAATAGTGAATGGGGGAG 58.078 38.462 0.00 0.00 0.00 4.30
1536 1582 7.888514 ACATCTTATAATAGTGAATGGGGGA 57.111 36.000 0.00 0.00 0.00 4.81
1537 1583 8.386264 AGAACATCTTATAATAGTGAATGGGGG 58.614 37.037 0.00 0.00 0.00 5.40
1579 1626 5.824624 CCACACTAAAATGCATCTACATCCT 59.175 40.000 0.00 0.00 0.00 3.24
1589 1636 2.580962 TGAGTGCCACACTAAAATGCA 58.419 42.857 0.00 0.00 45.44 3.96
1603 1650 3.262420 ACATACGGACTGAAATGAGTGC 58.738 45.455 7.93 0.00 0.00 4.40
1733 1785 3.844090 GACTGCCTCTCCGCCCTC 61.844 72.222 0.00 0.00 0.00 4.30
1734 1786 3.914551 AAGACTGCCTCTCCGCCCT 62.915 63.158 0.00 0.00 0.00 5.19
1735 1787 3.394836 AAGACTGCCTCTCCGCCC 61.395 66.667 0.00 0.00 0.00 6.13
1736 1788 2.125350 CAAGACTGCCTCTCCGCC 60.125 66.667 0.00 0.00 0.00 6.13
1737 1789 2.817396 GCAAGACTGCCTCTCCGC 60.817 66.667 0.00 0.00 43.26 5.54
1910 1962 2.294791 CCGAATCCTCGCAATAGACTCT 59.705 50.000 0.00 0.00 44.04 3.24
1969 2021 1.224965 GCATGAAGGAGAAGATCGGC 58.775 55.000 0.00 0.00 0.00 5.54
2140 2192 9.113838 ACATGTATTGTGGTAAGATCAGATTTC 57.886 33.333 0.00 0.00 37.11 2.17
2367 2419 2.237643 TCCATAGCAGCAGCAACAAAA 58.762 42.857 3.17 0.00 45.49 2.44
2437 2492 4.086706 ACGTGGATTTCTGAAGGAAAGT 57.913 40.909 0.00 0.00 45.61 2.66
2503 2563 5.464722 AGCTTCTCAATTATCTGCATACACG 59.535 40.000 0.00 0.00 0.00 4.49
2585 2645 5.248248 TGAATCCCAGTCAAGATTGTACTCA 59.752 40.000 0.00 0.00 32.91 3.41
2735 2795 9.813080 GAAGTAGTGATAGAACACACAATTTTC 57.187 33.333 0.00 0.00 42.45 2.29
2824 2885 2.521105 AAACGTCAGTGTACCCAGAC 57.479 50.000 0.00 0.00 0.00 3.51
2840 2901 4.167268 CACTAGTGAGCGGAGTCTAAAAC 58.833 47.826 18.45 0.00 0.00 2.43
2880 2942 7.500559 GGAAGAGCATGTATACAGATTCCTTTT 59.499 37.037 19.72 10.65 32.72 2.27
2970 3034 9.145442 GTCCAGTCTTAGATACCTAGGTAAAAT 57.855 37.037 25.25 15.68 33.99 1.82
2974 3038 6.690975 GCAGTCCAGTCTTAGATACCTAGGTA 60.691 46.154 23.82 23.82 34.87 3.08
3091 3159 4.580580 GGATGGGACCAAACAATGATAGAC 59.419 45.833 0.00 0.00 0.00 2.59
3093 3161 4.796606 AGGATGGGACCAAACAATGATAG 58.203 43.478 0.00 0.00 0.00 2.08
3123 3191 5.181748 GCATCTTCTGTGAACAAGGACTAT 58.818 41.667 0.00 0.00 0.00 2.12
3146 3214 8.824756 TTACAGAGGGAGTATATAGCAATAGG 57.175 38.462 0.00 0.00 0.00 2.57
3160 3411 9.699703 GCTCTTATATTTAGTTTACAGAGGGAG 57.300 37.037 0.00 0.00 0.00 4.30
3161 3412 8.358148 CGCTCTTATATTTAGTTTACAGAGGGA 58.642 37.037 0.00 0.00 40.65 4.20
3162 3413 8.142551 ACGCTCTTATATTTAGTTTACAGAGGG 58.857 37.037 8.01 8.01 42.67 4.30
3163 3414 9.530633 AACGCTCTTATATTTAGTTTACAGAGG 57.469 33.333 0.00 0.00 0.00 3.69
3179 3430 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
3180 3431 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
3181 3432 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
3182 3433 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
3183 3434 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
3184 3435 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
3185 3436 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
3224 3475 9.523168 AGACTTCTACTCACTCAGTAAACTAAT 57.477 33.333 0.00 0.00 37.13 1.73
3225 3476 8.921353 AGACTTCTACTCACTCAGTAAACTAA 57.079 34.615 0.00 0.00 37.13 2.24
3226 3477 9.656040 CTAGACTTCTACTCACTCAGTAAACTA 57.344 37.037 0.00 0.00 37.13 2.24
3227 3478 8.158789 ACTAGACTTCTACTCACTCAGTAAACT 58.841 37.037 0.00 0.00 37.13 2.66
3228 3479 8.326680 ACTAGACTTCTACTCACTCAGTAAAC 57.673 38.462 0.00 0.00 37.13 2.01
3231 3482 9.602568 CAATACTAGACTTCTACTCACTCAGTA 57.397 37.037 0.00 0.00 36.43 2.74
3232 3483 8.104566 ACAATACTAGACTTCTACTCACTCAGT 58.895 37.037 0.00 0.00 39.41 3.41
3233 3484 8.500753 ACAATACTAGACTTCTACTCACTCAG 57.499 38.462 0.00 0.00 0.00 3.35
3370 3623 8.209802 TGTATTCCCCTAGTCTAGTTTCAAAA 57.790 34.615 6.15 0.00 0.00 2.44
3371 3624 7.801893 TGTATTCCCCTAGTCTAGTTTCAAA 57.198 36.000 6.15 0.00 0.00 2.69
3372 3625 7.989947 ATGTATTCCCCTAGTCTAGTTTCAA 57.010 36.000 6.15 0.00 0.00 2.69
3373 3626 7.989947 AATGTATTCCCCTAGTCTAGTTTCA 57.010 36.000 6.15 0.00 0.00 2.69
3374 3627 9.110502 CAAAATGTATTCCCCTAGTCTAGTTTC 57.889 37.037 6.15 0.00 0.00 2.78
3375 3628 8.832735 TCAAAATGTATTCCCCTAGTCTAGTTT 58.167 33.333 6.15 0.00 0.00 2.66
3376 3629 8.388656 TCAAAATGTATTCCCCTAGTCTAGTT 57.611 34.615 6.15 0.00 0.00 2.24
3377 3630 7.989947 TCAAAATGTATTCCCCTAGTCTAGT 57.010 36.000 6.15 0.00 0.00 2.57
3378 3631 9.110502 GTTTCAAAATGTATTCCCCTAGTCTAG 57.889 37.037 0.00 0.00 0.00 2.43
3379 3632 7.767198 CGTTTCAAAATGTATTCCCCTAGTCTA 59.233 37.037 0.00 0.00 0.00 2.59
3380 3633 6.598064 CGTTTCAAAATGTATTCCCCTAGTCT 59.402 38.462 0.00 0.00 0.00 3.24
3381 3634 6.183360 CCGTTTCAAAATGTATTCCCCTAGTC 60.183 42.308 0.00 0.00 0.00 2.59
3382 3635 5.650703 CCGTTTCAAAATGTATTCCCCTAGT 59.349 40.000 0.00 0.00 0.00 2.57
3383 3636 5.650703 ACCGTTTCAAAATGTATTCCCCTAG 59.349 40.000 0.00 0.00 0.00 3.02
3384 3637 5.572252 ACCGTTTCAAAATGTATTCCCCTA 58.428 37.500 0.00 0.00 0.00 3.53
3385 3638 4.412843 ACCGTTTCAAAATGTATTCCCCT 58.587 39.130 0.00 0.00 0.00 4.79
3386 3639 4.794278 ACCGTTTCAAAATGTATTCCCC 57.206 40.909 0.00 0.00 0.00 4.81
3387 3640 4.854839 CGAACCGTTTCAAAATGTATTCCC 59.145 41.667 0.00 0.00 0.00 3.97
3388 3641 4.854839 CCGAACCGTTTCAAAATGTATTCC 59.145 41.667 0.00 0.00 0.00 3.01
3389 3642 5.341196 CACCGAACCGTTTCAAAATGTATTC 59.659 40.000 0.00 0.00 0.00 1.75
3390 3643 5.216648 CACCGAACCGTTTCAAAATGTATT 58.783 37.500 0.00 0.00 0.00 1.89
3391 3644 4.789784 CACCGAACCGTTTCAAAATGTAT 58.210 39.130 0.00 0.00 0.00 2.29
3392 3645 3.548415 GCACCGAACCGTTTCAAAATGTA 60.548 43.478 0.00 0.00 0.00 2.29
3393 3646 2.796735 GCACCGAACCGTTTCAAAATGT 60.797 45.455 0.00 0.00 0.00 2.71
3394 3647 1.784283 GCACCGAACCGTTTCAAAATG 59.216 47.619 0.00 0.00 0.00 2.32
3395 3648 1.405821 TGCACCGAACCGTTTCAAAAT 59.594 42.857 0.00 0.00 0.00 1.82
3396 3649 0.809385 TGCACCGAACCGTTTCAAAA 59.191 45.000 0.00 0.00 0.00 2.44
3397 3650 0.809385 TTGCACCGAACCGTTTCAAA 59.191 45.000 0.00 0.00 0.00 2.69
3398 3651 1.025812 ATTGCACCGAACCGTTTCAA 58.974 45.000 0.00 0.00 0.00 2.69
3399 3652 1.025812 AATTGCACCGAACCGTTTCA 58.974 45.000 0.00 0.00 0.00 2.69
3400 3653 1.002251 TCAATTGCACCGAACCGTTTC 60.002 47.619 0.00 0.00 0.00 2.78
3401 3654 1.025812 TCAATTGCACCGAACCGTTT 58.974 45.000 0.00 0.00 0.00 3.60
3409 3662 5.059404 ACTTTCCTTAATCAATTGCACCG 57.941 39.130 0.00 0.00 0.00 4.94
3475 3729 9.764363 AAAATAAGTTCCCTGATTTCTTTGTTC 57.236 29.630 0.00 0.00 31.55 3.18
3490 3744 9.788960 CATAAACAGAGGCTTAAAATAAGTTCC 57.211 33.333 0.00 0.00 0.00 3.62
3501 3755 4.469945 ACTGTAGGCATAAACAGAGGCTTA 59.530 41.667 8.21 0.00 44.79 3.09
3587 3841 0.178767 CTTGGCGGACTGATGATCCA 59.821 55.000 0.00 0.00 35.83 3.41
3618 3872 1.382692 GCTGGAGGGCTCTCAATTGC 61.383 60.000 17.22 9.61 41.69 3.56
3630 3884 1.409381 GGAAATGGAAGAGGCTGGAGG 60.409 57.143 0.00 0.00 0.00 4.30
3695 3949 0.410663 TTGGGGACTCGGGAGTTCTA 59.589 55.000 7.05 0.00 42.66 2.10
3697 3951 0.036294 CTTTGGGGACTCGGGAGTTC 60.036 60.000 2.39 0.18 42.66 3.01
3766 4020 0.251354 GGGCTGATGCTCTTGACTGA 59.749 55.000 0.00 0.00 36.57 3.41
3833 4087 0.250513 CAGCTCGGGCCTTTTCTAGT 59.749 55.000 2.00 0.00 39.73 2.57
4022 4281 2.876550 AGGAACGCACTTACAAAGGAAC 59.123 45.455 0.00 0.00 0.00 3.62
4028 4287 2.335316 ACCAAGGAACGCACTTACAA 57.665 45.000 0.00 0.00 0.00 2.41
4123 4383 1.080230 CGTGCTGCAGACTGCTAGT 60.080 57.895 26.94 0.00 45.31 2.57
4148 4408 3.443099 TTGTGACAGGAGCGATAGATG 57.557 47.619 0.00 0.00 39.76 2.90
4176 4438 5.314923 ACATCAATCAGCCAAATGTACAC 57.685 39.130 0.00 0.00 0.00 2.90
4332 4598 4.629523 GTTCGGGTTGGGTCCGCA 62.630 66.667 0.00 0.00 46.43 5.69
4418 4726 4.783621 TCGCTGACATGGCTGCCC 62.784 66.667 23.17 0.31 0.00 5.36
4419 4727 3.503363 GTCGCTGACATGGCTGCC 61.503 66.667 23.17 12.87 32.09 4.85
4420 4728 2.743538 TGTCGCTGACATGGCTGC 60.744 61.111 19.85 19.85 37.67 5.25
4421 4729 2.393768 GGTGTCGCTGACATGGCTG 61.394 63.158 13.12 0.00 44.63 4.85
4422 4730 2.046892 GGTGTCGCTGACATGGCT 60.047 61.111 13.12 0.00 44.63 4.75
4423 4731 2.358615 TGGTGTCGCTGACATGGC 60.359 61.111 13.12 0.00 44.63 4.40
4424 4732 2.393768 GCTGGTGTCGCTGACATGG 61.394 63.158 13.12 8.51 44.63 3.66
4425 4733 1.357258 GAGCTGGTGTCGCTGACATG 61.357 60.000 13.12 0.00 44.63 3.21
4426 4734 1.079543 GAGCTGGTGTCGCTGACAT 60.080 57.895 13.12 0.00 44.63 3.06
4427 4735 2.340078 GAGCTGGTGTCGCTGACA 59.660 61.111 7.20 7.20 40.50 3.58
4428 4736 2.433318 GGAGCTGGTGTCGCTGAC 60.433 66.667 0.00 2.32 37.96 3.51
4619 4991 3.610669 CGGATCGGCAGGAGAGGG 61.611 72.222 0.00 0.00 0.00 4.30
4622 4994 1.903890 GGATCGGATCGGCAGGAGA 60.904 63.158 11.62 0.00 0.00 3.71
4623 4995 2.653702 GGATCGGATCGGCAGGAG 59.346 66.667 11.62 0.00 0.00 3.69
4624 4996 2.917751 GGGATCGGATCGGCAGGA 60.918 66.667 11.62 0.00 0.00 3.86
4625 4997 2.919856 AGGGATCGGATCGGCAGG 60.920 66.667 11.62 0.00 0.00 4.85
4627 4999 1.903890 GAGAGGGATCGGATCGGCA 60.904 63.158 11.62 0.00 0.00 5.69
4628 5000 2.641277 GGAGAGGGATCGGATCGGC 61.641 68.421 11.62 3.99 0.00 5.54
4630 5002 2.336478 CGGGAGAGGGATCGGATCG 61.336 68.421 11.62 0.00 0.00 3.69
4631 5003 2.641277 GCGGGAGAGGGATCGGATC 61.641 68.421 9.54 9.54 0.00 3.36
4632 5004 2.601966 GCGGGAGAGGGATCGGAT 60.602 66.667 0.00 0.00 0.00 4.18
4633 5005 4.916314 GGCGGGAGAGGGATCGGA 62.916 72.222 0.00 0.00 0.00 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.