Multiple sequence alignment - TraesCS3B01G296200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G296200 chr3B 100.000 3228 0 0 1 3228 474713412 474716639 0.000000e+00 5962.0
1 TraesCS3B01G296200 chr3B 98.208 279 5 0 2524 2802 663556424 663556702 3.740000e-134 488.0
2 TraesCS3B01G296200 chr3A 89.880 2579 144 46 7 2527 485939933 485942452 0.000000e+00 3208.0
3 TraesCS3B01G296200 chr3A 97.909 287 6 0 2517 2803 22785806 22785520 6.220000e-137 497.0
4 TraesCS3B01G296200 chr3A 90.212 378 11 10 2800 3169 485942449 485942808 1.360000e-128 470.0
5 TraesCS3B01G296200 chr3A 84.040 401 52 4 83 471 681347571 681347971 3.040000e-100 375.0
6 TraesCS3B01G296200 chr3D 94.989 1397 50 9 929 2313 364520569 364521957 0.000000e+00 2174.0
7 TraesCS3B01G296200 chr3D 85.392 664 57 18 43 695 364517296 364517930 0.000000e+00 652.0
8 TraesCS3B01G296200 chr3D 86.613 493 47 11 3 479 429907955 429908444 7.930000e-146 527.0
9 TraesCS3B01G296200 chr3D 92.568 296 4 2 2878 3169 364522620 364522901 3.000000e-110 409.0
10 TraesCS3B01G296200 chr3D 92.829 251 14 3 698 948 364518741 364518987 8.510000e-96 361.0
11 TraesCS3B01G296200 chr3D 98.058 103 2 0 2425 2527 364522418 364522520 2.560000e-41 180.0
12 TraesCS3B01G296200 chr3D 84.043 94 7 6 2800 2893 364522517 364522602 2.060000e-12 84.2
13 TraesCS3B01G296200 chr6D 85.534 712 81 9 1 695 98116112 98116818 0.000000e+00 725.0
14 TraesCS3B01G296200 chr4D 83.152 736 91 21 1 722 366337068 366336352 2.720000e-180 641.0
15 TraesCS3B01G296200 chr7A 86.882 465 43 7 1 450 689974244 689974705 3.720000e-139 505.0
16 TraesCS3B01G296200 chr5A 97.895 285 6 0 2519 2803 34705561 34705277 8.050000e-136 494.0
17 TraesCS3B01G296200 chr2B 98.214 280 5 0 2524 2803 90444779 90445058 1.040000e-134 490.0
18 TraesCS3B01G296200 chr2B 97.857 280 6 0 2524 2803 564821830 564821551 4.840000e-133 484.0
19 TraesCS3B01G296200 chr6B 98.208 279 5 0 2524 2802 637877491 637877769 3.740000e-134 488.0
20 TraesCS3B01G296200 chr6B 98.208 279 5 0 2524 2802 712490941 712490663 3.740000e-134 488.0
21 TraesCS3B01G296200 chr5B 97.872 282 6 0 2523 2804 669690975 669691256 3.740000e-134 488.0
22 TraesCS3B01G296200 chr5B 85.580 319 31 7 1 304 537862969 537863287 1.440000e-83 320.0
23 TraesCS3B01G296200 chr1B 98.208 279 5 0 2524 2802 615614870 615614592 3.740000e-134 488.0
24 TraesCS3B01G296200 chr1B 85.063 395 44 10 1 381 139364010 139364403 3.910000e-104 388.0
25 TraesCS3B01G296200 chr2D 84.864 403 35 13 1 381 524465045 524465443 1.820000e-102 383.0
26 TraesCS3B01G296200 chr2D 85.237 359 37 9 1 344 571939079 571939436 3.960000e-94 355.0
27 TraesCS3B01G296200 chr6A 77.229 729 106 30 1 691 607871408 607870702 3.930000e-99 372.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G296200 chr3B 474713412 474716639 3227 False 5962.000000 5962 100.000000 1 3228 1 chr3B.!!$F1 3227
1 TraesCS3B01G296200 chr3A 485939933 485942808 2875 False 1839.000000 3208 90.046000 7 3169 2 chr3A.!!$F2 3162
2 TraesCS3B01G296200 chr3D 364517296 364522901 5605 False 643.366667 2174 91.313167 43 3169 6 chr3D.!!$F2 3126
3 TraesCS3B01G296200 chr6D 98116112 98116818 706 False 725.000000 725 85.534000 1 695 1 chr6D.!!$F1 694
4 TraesCS3B01G296200 chr4D 366336352 366337068 716 True 641.000000 641 83.152000 1 722 1 chr4D.!!$R1 721
5 TraesCS3B01G296200 chr6A 607870702 607871408 706 True 372.000000 372 77.229000 1 691 1 chr6A.!!$R1 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 458 0.398318 AAAACGAAGGAGCAGAGCCT 59.602 50.0 0.0 0.0 37.35 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2322 4814 0.179197 TACACGAGAGAAAGCGAGCG 60.179 55.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.965866 AGTTCTCGATCAGTGGGCGA 60.966 55.000 7.76 7.76 0.00 5.54
41 42 1.596477 GATCAGTGGGCGATGGAGC 60.596 63.158 0.00 0.00 0.00 4.70
45 46 1.075970 AGTGGGCGATGGAGCTCTA 60.076 57.895 14.64 8.26 38.71 2.43
104 106 4.759096 GCGCGCGCATGGTTCTTT 62.759 61.111 46.11 0.00 41.49 2.52
127 129 1.127951 GATTTCAACGCTGGTGTACCG 59.872 52.381 0.00 0.00 39.43 4.02
194 197 1.886777 GATCTCCTGCAGCGCCTTC 60.887 63.158 8.66 0.00 0.00 3.46
335 363 0.752658 CTGTGTGTGTGGAGACTGGA 59.247 55.000 0.00 0.00 0.00 3.86
344 372 3.038280 TGTGGAGACTGGAGTTTTCTGA 58.962 45.455 0.00 0.00 0.00 3.27
377 405 0.855349 GCGCACTGAATCGATCGAAT 59.145 50.000 23.50 14.75 0.00 3.34
391 419 3.242944 CGATCGAATTACTGTTGCGTGAT 59.757 43.478 10.26 0.00 0.00 3.06
394 422 5.351233 TCGAATTACTGTTGCGTGATTTT 57.649 34.783 0.00 0.00 0.00 1.82
426 458 0.398318 AAAACGAAGGAGCAGAGCCT 59.602 50.000 0.00 0.00 37.35 4.58
431 463 1.229464 AAGGAGCAGAGCCTGACCT 60.229 57.895 6.40 9.80 39.77 3.85
447 479 2.092968 TGACCTAGCAGCCCAGTAAATG 60.093 50.000 0.00 0.00 0.00 2.32
498 540 2.632544 ATCGACTGAACGCGACCCA 61.633 57.895 15.93 6.38 39.56 4.51
563 611 3.799755 GGCCGTTAGTGCCTTGCG 61.800 66.667 0.00 0.00 45.70 4.85
570 618 2.046009 TTAGTGCCTTGCGGTCACCA 62.046 55.000 0.00 0.00 37.77 4.17
571 619 2.046009 TAGTGCCTTGCGGTCACCAA 62.046 55.000 0.00 0.00 37.77 3.67
581 629 2.033448 GTCACCAATGTCGGCCCA 59.967 61.111 0.00 0.00 0.00 5.36
637 686 8.852135 AGAAAACAAATCAATGATTTTTGCCAT 58.148 25.926 17.65 3.86 39.82 4.40
660 710 0.800012 TAATTCTTCGTTGCGGTGCC 59.200 50.000 0.00 0.00 0.00 5.01
685 735 8.349245 CCAAGTGTCACATTTTGTAAAGTGATA 58.651 33.333 5.62 0.00 42.08 2.15
712 1570 2.093128 ACGACCCTAATGTGATGGTTCC 60.093 50.000 0.00 0.00 0.00 3.62
724 1582 4.696402 TGTGATGGTTCCGTACATTTTACC 59.304 41.667 0.00 0.00 0.00 2.85
776 1639 2.426024 CAGGAATTTGATGCTGTCCCAG 59.574 50.000 0.00 0.00 34.42 4.45
990 3459 2.233271 CTACCCCTACCTCGCGAATTA 58.767 52.381 11.33 3.00 0.00 1.40
1106 3579 1.068943 TCTATCTCCCCCTCGCCTCT 61.069 60.000 0.00 0.00 0.00 3.69
1370 3843 1.674651 CCTGTCGTCTGTCTCCGGA 60.675 63.158 2.93 2.93 0.00 5.14
1497 3970 1.825622 GCTAAGCTCATGGGCCACC 60.826 63.158 15.67 0.00 37.24 4.61
1895 4368 3.657727 CAATTCCCCATACTACCCCTCAT 59.342 47.826 0.00 0.00 0.00 2.90
1912 4385 5.850028 CCCCTCATCCCTCTAATTACCTAAA 59.150 44.000 0.00 0.00 0.00 1.85
1913 4386 6.013293 CCCCTCATCCCTCTAATTACCTAAAG 60.013 46.154 0.00 0.00 0.00 1.85
1914 4387 6.468543 CCTCATCCCTCTAATTACCTAAAGC 58.531 44.000 0.00 0.00 0.00 3.51
1917 4390 7.867921 TCATCCCTCTAATTACCTAAAGCAAA 58.132 34.615 0.00 0.00 0.00 3.68
1918 4391 8.333235 TCATCCCTCTAATTACCTAAAGCAAAA 58.667 33.333 0.00 0.00 0.00 2.44
1959 4436 4.399618 TCATTGCCCTCTATCTATACGCTC 59.600 45.833 0.00 0.00 0.00 5.03
1963 4440 4.263550 TGCCCTCTATCTATACGCTCTTCT 60.264 45.833 0.00 0.00 0.00 2.85
1965 4442 5.392595 GCCCTCTATCTATACGCTCTTCTTG 60.393 48.000 0.00 0.00 0.00 3.02
1968 4445 6.401688 CCTCTATCTATACGCTCTTCTTGTCG 60.402 46.154 0.00 0.00 0.00 4.35
2139 4620 1.056700 ACCATATCCGGCCAGCTCTT 61.057 55.000 2.24 0.00 0.00 2.85
2227 4719 6.154021 TGGAGTAGTAAACTAGGTTTAGCTGG 59.846 42.308 0.00 0.00 38.44 4.85
2313 4805 3.090952 CAGCGCTGCTATACTTTCTCT 57.909 47.619 26.68 0.00 36.40 3.10
2314 4806 3.049206 CAGCGCTGCTATACTTTCTCTC 58.951 50.000 26.68 0.00 36.40 3.20
2315 4807 2.955660 AGCGCTGCTATACTTTCTCTCT 59.044 45.455 10.39 0.00 36.99 3.10
2316 4808 3.004315 AGCGCTGCTATACTTTCTCTCTC 59.996 47.826 10.39 0.00 36.99 3.20
2317 4809 3.004315 GCGCTGCTATACTTTCTCTCTCT 59.996 47.826 0.00 0.00 0.00 3.10
2318 4810 4.783242 CGCTGCTATACTTTCTCTCTCTC 58.217 47.826 0.00 0.00 0.00 3.20
2319 4811 4.610456 CGCTGCTATACTTTCTCTCTCTCG 60.610 50.000 0.00 0.00 0.00 4.04
2320 4812 4.783242 CTGCTATACTTTCTCTCTCTCGC 58.217 47.826 0.00 0.00 0.00 5.03
2321 4813 4.456535 TGCTATACTTTCTCTCTCTCGCT 58.543 43.478 0.00 0.00 0.00 4.93
2322 4814 4.513692 TGCTATACTTTCTCTCTCTCGCTC 59.486 45.833 0.00 0.00 0.00 5.03
2323 4815 4.377022 GCTATACTTTCTCTCTCTCGCTCG 60.377 50.000 0.00 0.00 0.00 5.03
2324 4816 0.450184 ACTTTCTCTCTCTCGCTCGC 59.550 55.000 0.00 0.00 0.00 5.03
2325 4817 0.732571 CTTTCTCTCTCTCGCTCGCT 59.267 55.000 0.00 0.00 0.00 4.93
2326 4818 0.730265 TTTCTCTCTCTCGCTCGCTC 59.270 55.000 0.00 0.00 0.00 5.03
2327 4819 1.425267 TTCTCTCTCTCGCTCGCTCG 61.425 60.000 0.00 0.00 0.00 5.03
2330 4822 3.107104 CTCTCTCGCTCGCTCGCTT 62.107 63.158 0.00 0.00 0.00 4.68
2337 4829 2.220887 GCTCGCTCGCTTTCTCTCG 61.221 63.158 0.00 0.00 0.00 4.04
2356 4848 5.503927 TCTCGTGTATAGTTGTAGGGTCTT 58.496 41.667 0.00 0.00 0.00 3.01
2357 4849 5.587844 TCTCGTGTATAGTTGTAGGGTCTTC 59.412 44.000 0.00 0.00 0.00 2.87
2358 4850 5.503927 TCGTGTATAGTTGTAGGGTCTTCT 58.496 41.667 0.00 0.00 0.00 2.85
2365 4857 2.633481 GTTGTAGGGTCTTCTGTGGTCT 59.367 50.000 0.00 0.00 0.00 3.85
2369 4861 1.417890 AGGGTCTTCTGTGGTCTTGTG 59.582 52.381 0.00 0.00 0.00 3.33
2380 4872 6.455647 TCTGTGGTCTTGTGTTGTAATCTAG 58.544 40.000 0.00 0.00 0.00 2.43
2396 4891 9.535170 TTGTAATCTAGTCCTAATCCATCTAGG 57.465 37.037 0.00 0.00 37.82 3.02
2398 4893 9.536510 GTAATCTAGTCCTAATCCATCTAGGTT 57.463 37.037 0.00 0.00 37.72 3.50
2411 4906 1.828595 TCTAGGTTGCCATGCTTCGTA 59.171 47.619 0.00 0.00 0.00 3.43
2419 4914 4.071961 TGCCATGCTTCGTATAATCTGT 57.928 40.909 0.00 0.00 0.00 3.41
2420 4915 4.450976 TGCCATGCTTCGTATAATCTGTT 58.549 39.130 0.00 0.00 0.00 3.16
2423 4918 6.368791 TGCCATGCTTCGTATAATCTGTTATC 59.631 38.462 0.00 0.00 32.84 1.75
2453 5314 1.153066 ATCTCTCTCCGCTGCTCGA 60.153 57.895 0.00 0.00 41.67 4.04
2525 5391 2.286950 CGCAGTCTGTTGCTTGCTTTTA 60.287 45.455 0.93 0.00 41.90 1.52
2526 5392 3.303406 GCAGTCTGTTGCTTGCTTTTAG 58.697 45.455 0.93 0.00 40.89 1.85
2527 5393 3.854784 GCAGTCTGTTGCTTGCTTTTAGG 60.855 47.826 0.93 0.00 40.89 2.69
2528 5394 2.294512 AGTCTGTTGCTTGCTTTTAGGC 59.705 45.455 0.00 0.00 0.00 3.93
2529 5395 2.294512 GTCTGTTGCTTGCTTTTAGGCT 59.705 45.455 0.00 0.00 0.00 4.58
2530 5396 2.554032 TCTGTTGCTTGCTTTTAGGCTC 59.446 45.455 0.00 0.00 0.00 4.70
2531 5397 1.266718 TGTTGCTTGCTTTTAGGCTCG 59.733 47.619 0.00 0.00 0.00 5.03
2532 5398 1.266989 GTTGCTTGCTTTTAGGCTCGT 59.733 47.619 0.00 0.00 0.00 4.18
2533 5399 1.156736 TGCTTGCTTTTAGGCTCGTC 58.843 50.000 0.00 0.00 0.00 4.20
2534 5400 1.156736 GCTTGCTTTTAGGCTCGTCA 58.843 50.000 0.00 0.00 0.00 4.35
2535 5401 1.740025 GCTTGCTTTTAGGCTCGTCAT 59.260 47.619 0.00 0.00 0.00 3.06
2536 5402 2.936498 GCTTGCTTTTAGGCTCGTCATA 59.064 45.455 0.00 0.00 0.00 2.15
2537 5403 3.001736 GCTTGCTTTTAGGCTCGTCATAG 59.998 47.826 0.00 0.00 0.00 2.23
2538 5404 3.887621 TGCTTTTAGGCTCGTCATAGT 57.112 42.857 0.00 0.00 0.00 2.12
2539 5405 3.521560 TGCTTTTAGGCTCGTCATAGTG 58.478 45.455 0.00 0.00 0.00 2.74
2540 5406 2.866762 GCTTTTAGGCTCGTCATAGTGG 59.133 50.000 0.00 0.00 0.00 4.00
2541 5407 3.458189 CTTTTAGGCTCGTCATAGTGGG 58.542 50.000 0.00 0.00 0.00 4.61
2542 5408 1.410004 TTAGGCTCGTCATAGTGGGG 58.590 55.000 0.00 0.00 0.00 4.96
2543 5409 0.554305 TAGGCTCGTCATAGTGGGGA 59.446 55.000 0.00 0.00 0.00 4.81
2544 5410 0.757188 AGGCTCGTCATAGTGGGGAG 60.757 60.000 0.00 0.00 0.00 4.30
2545 5411 1.043673 GGCTCGTCATAGTGGGGAGT 61.044 60.000 0.00 0.00 0.00 3.85
2546 5412 1.688772 GCTCGTCATAGTGGGGAGTA 58.311 55.000 0.00 0.00 0.00 2.59
2547 5413 2.029623 GCTCGTCATAGTGGGGAGTAA 58.970 52.381 0.00 0.00 0.00 2.24
2548 5414 2.223758 GCTCGTCATAGTGGGGAGTAAC 60.224 54.545 0.00 0.00 0.00 2.50
2549 5415 3.288964 CTCGTCATAGTGGGGAGTAACT 58.711 50.000 0.00 0.00 0.00 2.24
2550 5416 3.700038 CTCGTCATAGTGGGGAGTAACTT 59.300 47.826 0.00 0.00 0.00 2.66
2551 5417 4.858850 TCGTCATAGTGGGGAGTAACTTA 58.141 43.478 0.00 0.00 0.00 2.24
2552 5418 4.885907 TCGTCATAGTGGGGAGTAACTTAG 59.114 45.833 0.00 0.00 0.00 2.18
2553 5419 4.885907 CGTCATAGTGGGGAGTAACTTAGA 59.114 45.833 0.00 0.00 0.00 2.10
2554 5420 5.221009 CGTCATAGTGGGGAGTAACTTAGAC 60.221 48.000 0.00 0.00 0.00 2.59
2555 5421 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
2556 5422 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
2557 5423 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
2558 5424 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
2559 5425 6.649041 AGTGGGGAGTAACTTAGACTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
2560 5426 7.037342 AGTGGGGAGTAACTTAGACTAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
2561 5427 6.889177 AGTGGGGAGTAACTTAGACTAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
2562 5428 6.660949 GTGGGGAGTAACTTAGACTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
2563 5429 7.341512 GTGGGGAGTAACTTAGACTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
2564 5430 8.560039 TGGGGAGTAACTTAGACTAGTAACATA 58.440 37.037 0.00 0.00 0.00 2.29
2565 5431 8.845227 GGGGAGTAACTTAGACTAGTAACATAC 58.155 40.741 0.00 0.00 0.00 2.39
2566 5432 9.401058 GGGAGTAACTTAGACTAGTAACATACA 57.599 37.037 0.00 0.00 0.00 2.29
2595 5461 9.964354 TGTTACTAGTCTATGTTACTACCTTCA 57.036 33.333 0.00 0.00 0.00 3.02
2602 5468 8.871125 AGTCTATGTTACTACCTTCATAATGGG 58.129 37.037 0.00 0.00 0.00 4.00
2603 5469 8.648693 GTCTATGTTACTACCTTCATAATGGGT 58.351 37.037 0.00 0.00 37.16 4.51
2604 5470 9.886337 TCTATGTTACTACCTTCATAATGGGTA 57.114 33.333 0.00 0.00 34.86 3.69
2610 5476 6.479972 CTACCTTCATAATGGGTAGTGTCA 57.520 41.667 9.46 0.00 44.30 3.58
2611 5477 5.975988 ACCTTCATAATGGGTAGTGTCAT 57.024 39.130 0.00 0.00 0.00 3.06
2612 5478 8.190326 CTACCTTCATAATGGGTAGTGTCATA 57.810 38.462 9.46 0.00 44.30 2.15
2613 5479 7.067496 ACCTTCATAATGGGTAGTGTCATAG 57.933 40.000 0.00 0.00 0.00 2.23
2614 5480 6.043243 ACCTTCATAATGGGTAGTGTCATAGG 59.957 42.308 0.00 0.00 0.00 2.57
2615 5481 6.043243 CCTTCATAATGGGTAGTGTCATAGGT 59.957 42.308 0.00 0.00 0.00 3.08
2616 5482 6.419484 TCATAATGGGTAGTGTCATAGGTG 57.581 41.667 0.00 0.00 0.00 4.00
2617 5483 5.903010 TCATAATGGGTAGTGTCATAGGTGT 59.097 40.000 0.00 0.00 0.00 4.16
2618 5484 4.487714 AATGGGTAGTGTCATAGGTGTG 57.512 45.455 0.00 0.00 0.00 3.82
2619 5485 2.184533 TGGGTAGTGTCATAGGTGTGG 58.815 52.381 0.00 0.00 0.00 4.17
2620 5486 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
2621 5487 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
2622 5488 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
2623 5489 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
2642 5508 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
2643 5509 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
2644 5510 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
2652 5518 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
2653 5519 9.556030 GTTGCCTTCATTTATTACTTTGTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
2654 5520 9.515226 TTGCCTTCATTTATTACTTTGTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
2655 5521 9.162764 TGCCTTCATTTATTACTTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
2656 5522 9.162764 GCCTTCATTTATTACTTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
2667 5533 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
2668 5534 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
2669 5535 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
2670 5536 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
2671 5537 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
2672 5538 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
2673 5539 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
2674 5540 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
2675 5541 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
2676 5542 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
2677 5543 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
2678 5544 6.000840 TCATTATGCATTGGAAACCGCTATA 58.999 36.000 3.54 0.00 0.00 1.31
2679 5545 6.658816 TCATTATGCATTGGAAACCGCTATAT 59.341 34.615 3.54 0.00 0.00 0.86
2680 5546 4.771590 ATGCATTGGAAACCGCTATATG 57.228 40.909 0.00 0.00 0.00 1.78
2681 5547 3.814625 TGCATTGGAAACCGCTATATGA 58.185 40.909 0.00 0.00 0.00 2.15
2682 5548 4.397420 TGCATTGGAAACCGCTATATGAT 58.603 39.130 0.00 0.00 0.00 2.45
2683 5549 4.216042 TGCATTGGAAACCGCTATATGATG 59.784 41.667 0.00 0.00 0.00 3.07
2684 5550 4.379813 GCATTGGAAACCGCTATATGATGG 60.380 45.833 0.00 0.00 0.00 3.51
2685 5551 4.431416 TTGGAAACCGCTATATGATGGT 57.569 40.909 0.00 0.00 35.90 3.55
2686 5552 5.554437 TTGGAAACCGCTATATGATGGTA 57.446 39.130 0.00 0.00 33.45 3.25
2687 5553 5.554437 TGGAAACCGCTATATGATGGTAA 57.446 39.130 0.00 0.00 33.45 2.85
2688 5554 5.302360 TGGAAACCGCTATATGATGGTAAC 58.698 41.667 0.00 0.00 33.45 2.50
2717 5583 5.599999 TGTTACTCTATTTGCCTCTCTCC 57.400 43.478 0.00 0.00 0.00 3.71
2718 5584 5.273208 TGTTACTCTATTTGCCTCTCTCCT 58.727 41.667 0.00 0.00 0.00 3.69
2719 5585 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
2720 5586 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
2721 5587 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
2722 5588 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
2723 5589 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
2724 5590 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
2725 5591 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
2726 5592 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
2727 5593 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
2728 5594 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
2729 5595 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
2730 5596 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
2731 5597 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
2732 5598 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
2733 5599 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
2734 5600 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
2735 5601 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
2736 5602 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
2737 5603 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
2738 5604 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
2739 5605 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
2740 5606 5.065218 CCTCATTAACTACTTGCCACATCAC 59.935 44.000 0.00 0.00 0.00 3.06
2741 5607 4.941263 TCATTAACTACTTGCCACATCACC 59.059 41.667 0.00 0.00 0.00 4.02
2742 5608 2.949177 AACTACTTGCCACATCACCA 57.051 45.000 0.00 0.00 0.00 4.17
2743 5609 2.949177 ACTACTTGCCACATCACCAA 57.051 45.000 0.00 0.00 0.00 3.67
2744 5610 3.439857 ACTACTTGCCACATCACCAAT 57.560 42.857 0.00 0.00 0.00 3.16
2745 5611 3.766545 ACTACTTGCCACATCACCAATT 58.233 40.909 0.00 0.00 0.00 2.32
2746 5612 4.151883 ACTACTTGCCACATCACCAATTT 58.848 39.130 0.00 0.00 0.00 1.82
2747 5613 4.588528 ACTACTTGCCACATCACCAATTTT 59.411 37.500 0.00 0.00 0.00 1.82
2748 5614 5.772672 ACTACTTGCCACATCACCAATTTTA 59.227 36.000 0.00 0.00 0.00 1.52
2749 5615 4.881920 ACTTGCCACATCACCAATTTTAC 58.118 39.130 0.00 0.00 0.00 2.01
2750 5616 4.588528 ACTTGCCACATCACCAATTTTACT 59.411 37.500 0.00 0.00 0.00 2.24
2751 5617 5.070313 ACTTGCCACATCACCAATTTTACTT 59.930 36.000 0.00 0.00 0.00 2.24
2752 5618 6.266558 ACTTGCCACATCACCAATTTTACTTA 59.733 34.615 0.00 0.00 0.00 2.24
2753 5619 6.849085 TGCCACATCACCAATTTTACTTAT 57.151 33.333 0.00 0.00 0.00 1.73
2754 5620 6.629128 TGCCACATCACCAATTTTACTTATG 58.371 36.000 0.00 0.00 0.00 1.90
2755 5621 6.210385 TGCCACATCACCAATTTTACTTATGT 59.790 34.615 0.00 0.00 0.00 2.29
2756 5622 6.531240 GCCACATCACCAATTTTACTTATGTG 59.469 38.462 0.00 0.00 41.50 3.21
2758 5624 6.531240 CACATCACCAATTTTACTTATGTGGC 59.469 38.462 0.00 0.00 39.34 5.01
2759 5625 6.210385 ACATCACCAATTTTACTTATGTGGCA 59.790 34.615 0.00 0.00 0.00 4.92
2760 5626 6.849085 TCACCAATTTTACTTATGTGGCAT 57.151 33.333 0.00 0.00 0.00 4.40
2761 5627 6.862209 TCACCAATTTTACTTATGTGGCATC 58.138 36.000 0.00 0.00 0.00 3.91
2762 5628 6.663093 TCACCAATTTTACTTATGTGGCATCT 59.337 34.615 0.00 0.00 0.00 2.90
2763 5629 7.831690 TCACCAATTTTACTTATGTGGCATCTA 59.168 33.333 0.00 0.00 0.00 1.98
2764 5630 8.632679 CACCAATTTTACTTATGTGGCATCTAT 58.367 33.333 0.00 0.00 0.00 1.98
2765 5631 8.632679 ACCAATTTTACTTATGTGGCATCTATG 58.367 33.333 0.00 0.00 0.00 2.23
2766 5632 8.632679 CCAATTTTACTTATGTGGCATCTATGT 58.367 33.333 0.00 0.00 0.00 2.29
2770 5636 9.899661 TTTTACTTATGTGGCATCTATGTTACT 57.100 29.630 0.00 0.00 0.00 2.24
2772 5638 9.976511 TTACTTATGTGGCATCTATGTTACTAC 57.023 33.333 0.00 0.00 0.00 2.73
2773 5639 7.442656 ACTTATGTGGCATCTATGTTACTACC 58.557 38.462 0.00 0.00 0.00 3.18
2774 5640 7.290248 ACTTATGTGGCATCTATGTTACTACCT 59.710 37.037 0.00 0.00 0.00 3.08
2775 5641 8.715190 TTATGTGGCATCTATGTTACTACCTA 57.285 34.615 0.00 0.00 0.00 3.08
2776 5642 7.798710 ATGTGGCATCTATGTTACTACCTAT 57.201 36.000 0.00 0.00 0.00 2.57
2777 5643 6.993079 TGTGGCATCTATGTTACTACCTATG 58.007 40.000 0.00 0.00 0.00 2.23
2778 5644 6.553476 TGTGGCATCTATGTTACTACCTATGT 59.447 38.462 0.00 0.00 0.00 2.29
2779 5645 7.070696 TGTGGCATCTATGTTACTACCTATGTT 59.929 37.037 0.00 0.00 0.00 2.71
2780 5646 8.582437 GTGGCATCTATGTTACTACCTATGTTA 58.418 37.037 0.00 0.00 0.00 2.41
2781 5647 8.582437 TGGCATCTATGTTACTACCTATGTTAC 58.418 37.037 0.00 0.00 0.00 2.50
2782 5648 8.804204 GGCATCTATGTTACTACCTATGTTACT 58.196 37.037 0.00 0.00 0.00 2.24
2783 5649 9.843334 GCATCTATGTTACTACCTATGTTACTC 57.157 37.037 0.00 0.00 0.00 2.59
2785 5651 8.930846 TCTATGTTACTACCTATGTTACTCCC 57.069 38.462 0.00 0.00 0.00 4.30
2786 5652 8.505246 TCTATGTTACTACCTATGTTACTCCCA 58.495 37.037 0.00 0.00 0.00 4.37
2787 5653 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
2788 5654 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
2789 5655 7.642186 TGTTACTACCTATGTTACTCCCACTA 58.358 38.462 0.00 0.00 0.00 2.74
2790 5656 8.284435 TGTTACTACCTATGTTACTCCCACTAT 58.716 37.037 0.00 0.00 0.00 2.12
2791 5657 8.574737 GTTACTACCTATGTTACTCCCACTATG 58.425 40.741 0.00 0.00 0.00 2.23
2792 5658 6.919158 ACTACCTATGTTACTCCCACTATGA 58.081 40.000 0.00 0.00 0.00 2.15
2793 5659 6.776603 ACTACCTATGTTACTCCCACTATGAC 59.223 42.308 0.00 0.00 0.00 3.06
2794 5660 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
2795 5661 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
2796 5662 5.011125 CCTATGTTACTCCCACTATGACCAG 59.989 48.000 0.00 0.00 0.00 4.00
2797 5663 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
2798 5664 1.789523 TACTCCCACTATGACCAGCC 58.210 55.000 0.00 0.00 0.00 4.85
2799 5665 0.043334 ACTCCCACTATGACCAGCCT 59.957 55.000 0.00 0.00 0.00 4.58
2800 5666 1.207791 CTCCCACTATGACCAGCCTT 58.792 55.000 0.00 0.00 0.00 4.35
2816 5682 1.401539 GCCTTAGCCGTTCTTTTGCTG 60.402 52.381 0.00 0.00 36.57 4.41
2817 5683 1.200020 CCTTAGCCGTTCTTTTGCTGG 59.800 52.381 0.00 0.00 36.57 4.85
2818 5684 0.596082 TTAGCCGTTCTTTTGCTGGC 59.404 50.000 0.00 0.00 46.07 4.85
2819 5685 3.042560 GCCGTTCTTTTGCTGGCT 58.957 55.556 0.00 0.00 42.44 4.75
2820 5686 1.081175 GCCGTTCTTTTGCTGGCTC 60.081 57.895 0.00 0.00 42.44 4.70
2821 5687 1.207593 CCGTTCTTTTGCTGGCTCG 59.792 57.895 0.00 0.00 0.00 5.03
2822 5688 1.507141 CCGTTCTTTTGCTGGCTCGT 61.507 55.000 0.00 0.00 0.00 4.18
2824 5690 1.732259 CGTTCTTTTGCTGGCTCGTAT 59.268 47.619 0.00 0.00 0.00 3.06
2838 5704 4.231718 GCTCGTATAGCCAGCCTATATC 57.768 50.000 0.00 0.00 46.25 1.63
2840 5706 4.261405 GCTCGTATAGCCAGCCTATATCTG 60.261 50.000 0.00 0.00 46.25 2.90
2842 5708 5.262009 TCGTATAGCCAGCCTATATCTGTT 58.738 41.667 0.00 0.00 40.25 3.16
2843 5709 6.420638 TCGTATAGCCAGCCTATATCTGTTA 58.579 40.000 0.00 0.00 40.25 2.41
2846 5712 7.863375 CGTATAGCCAGCCTATATCTGTTATTC 59.137 40.741 0.00 0.00 40.25 1.75
2849 5715 7.084268 AGCCAGCCTATATCTGTTATTCTTT 57.916 36.000 0.00 0.00 0.00 2.52
2850 5716 7.521669 AGCCAGCCTATATCTGTTATTCTTTT 58.478 34.615 0.00 0.00 0.00 2.27
2851 5717 8.001292 AGCCAGCCTATATCTGTTATTCTTTTT 58.999 33.333 0.00 0.00 0.00 1.94
2897 5796 2.058798 GATCTGCGTGTTCGTTGAAGA 58.941 47.619 0.00 0.00 39.49 2.87
2902 5801 1.757574 CGTGTTCGTTGAAGACCGTA 58.242 50.000 1.82 0.00 33.14 4.02
3091 5995 4.592426 GGAGCACTCCGGTTGTAC 57.408 61.111 0.00 0.00 40.36 2.90
3092 5996 1.972978 GGAGCACTCCGGTTGTACT 59.027 57.895 0.00 1.76 40.36 2.73
3093 5997 0.108756 GGAGCACTCCGGTTGTACTC 60.109 60.000 16.70 16.70 40.36 2.59
3094 5998 0.108756 GAGCACTCCGGTTGTACTCC 60.109 60.000 15.09 0.00 0.00 3.85
3095 5999 0.542232 AGCACTCCGGTTGTACTCCT 60.542 55.000 0.00 0.00 0.00 3.69
3096 6000 1.180029 GCACTCCGGTTGTACTCCTA 58.820 55.000 0.00 0.00 0.00 2.94
3169 6077 9.977762 CTTGTTACCATTAGTAATTTTCGTACC 57.022 33.333 0.00 0.00 42.81 3.34
3170 6078 9.499479 TTGTTACCATTAGTAATTTTCGTACCA 57.501 29.630 0.00 0.00 42.81 3.25
3171 6079 9.153721 TGTTACCATTAGTAATTTTCGTACCAG 57.846 33.333 0.00 0.00 42.81 4.00
3172 6080 9.154847 GTTACCATTAGTAATTTTCGTACCAGT 57.845 33.333 0.00 0.00 42.81 4.00
3174 6082 8.707938 ACCATTAGTAATTTTCGTACCAGTAC 57.292 34.615 0.00 0.00 0.00 2.73
3175 6083 8.534496 ACCATTAGTAATTTTCGTACCAGTACT 58.466 33.333 6.40 0.00 34.04 2.73
3176 6084 9.374838 CCATTAGTAATTTTCGTACCAGTACTT 57.625 33.333 6.40 0.00 34.04 2.24
3180 6088 8.992835 AGTAATTTTCGTACCAGTACTTAAGG 57.007 34.615 7.53 0.00 34.04 2.69
3181 6089 6.732531 AATTTTCGTACCAGTACTTAAGGC 57.267 37.500 7.53 0.00 34.04 4.35
3182 6090 3.874392 TTCGTACCAGTACTTAAGGCC 57.126 47.619 7.53 0.00 34.04 5.19
3183 6091 3.091633 TCGTACCAGTACTTAAGGCCT 57.908 47.619 0.00 0.00 34.04 5.19
3184 6092 2.756760 TCGTACCAGTACTTAAGGCCTG 59.243 50.000 5.69 11.36 34.04 4.85
3185 6093 2.494870 CGTACCAGTACTTAAGGCCTGT 59.505 50.000 5.69 1.81 34.04 4.00
3186 6094 3.056322 CGTACCAGTACTTAAGGCCTGTT 60.056 47.826 5.69 0.00 34.04 3.16
3187 6095 3.697619 ACCAGTACTTAAGGCCTGTTC 57.302 47.619 5.69 0.00 0.00 3.18
3188 6096 2.028385 ACCAGTACTTAAGGCCTGTTCG 60.028 50.000 5.69 0.00 0.00 3.95
3189 6097 2.618053 CAGTACTTAAGGCCTGTTCGG 58.382 52.381 5.69 0.00 0.00 4.30
3190 6098 2.232941 CAGTACTTAAGGCCTGTTCGGA 59.767 50.000 5.69 0.00 33.16 4.55
3191 6099 2.496470 AGTACTTAAGGCCTGTTCGGAG 59.504 50.000 5.69 0.60 33.16 4.63
3192 6100 1.349067 ACTTAAGGCCTGTTCGGAGT 58.651 50.000 5.69 1.29 33.16 3.85
3193 6101 1.275573 ACTTAAGGCCTGTTCGGAGTC 59.724 52.381 5.69 0.00 33.16 3.36
3194 6102 1.550976 CTTAAGGCCTGTTCGGAGTCT 59.449 52.381 5.69 0.00 33.16 3.24
3195 6103 1.183549 TAAGGCCTGTTCGGAGTCTC 58.816 55.000 5.69 0.00 33.16 3.36
3196 6104 0.543174 AAGGCCTGTTCGGAGTCTCT 60.543 55.000 5.69 0.00 33.16 3.10
3197 6105 0.968393 AGGCCTGTTCGGAGTCTCTC 60.968 60.000 3.11 0.00 33.16 3.20
3198 6106 0.968393 GGCCTGTTCGGAGTCTCTCT 60.968 60.000 0.00 0.00 33.16 3.10
3199 6107 0.172352 GCCTGTTCGGAGTCTCTCTG 59.828 60.000 0.00 0.00 38.15 3.35
3200 6108 0.172352 CCTGTTCGGAGTCTCTCTGC 59.828 60.000 0.00 0.00 36.85 4.26
3201 6109 1.173043 CTGTTCGGAGTCTCTCTGCT 58.827 55.000 0.00 0.00 36.85 4.24
3202 6110 1.132262 CTGTTCGGAGTCTCTCTGCTC 59.868 57.143 0.00 0.00 36.85 4.26
3203 6111 0.454196 GTTCGGAGTCTCTCTGCTCC 59.546 60.000 0.00 0.00 45.78 4.70
3204 6112 0.329931 TTCGGAGTCTCTCTGCTCCT 59.670 55.000 8.67 0.00 46.75 3.69
3205 6113 0.393673 TCGGAGTCTCTCTGCTCCTG 60.394 60.000 8.67 3.44 46.75 3.86
3206 6114 1.383456 CGGAGTCTCTCTGCTCCTGG 61.383 65.000 8.67 0.00 46.75 4.45
3207 6115 0.033601 GGAGTCTCTCTGCTCCTGGA 60.034 60.000 0.00 0.00 45.78 3.86
3208 6116 1.392589 GAGTCTCTCTGCTCCTGGAG 58.607 60.000 19.55 19.55 0.00 3.86
3217 6125 2.186384 CTCCTGGAGCTGCCGAAG 59.814 66.667 11.42 0.00 40.66 3.79
3218 6126 2.604686 TCCTGGAGCTGCCGAAGT 60.605 61.111 1.53 0.00 40.66 3.01
3219 6127 2.125350 CCTGGAGCTGCCGAAGTC 60.125 66.667 1.53 0.00 40.66 3.01
3220 6128 2.659016 CTGGAGCTGCCGAAGTCA 59.341 61.111 1.53 0.00 40.66 3.41
3221 6129 1.739562 CTGGAGCTGCCGAAGTCAC 60.740 63.158 1.53 0.00 40.66 3.67
3222 6130 2.343758 GGAGCTGCCGAAGTCACA 59.656 61.111 0.00 0.00 0.00 3.58
3223 6131 1.739562 GGAGCTGCCGAAGTCACAG 60.740 63.158 0.00 0.00 0.00 3.66
3224 6132 1.005630 GAGCTGCCGAAGTCACAGT 60.006 57.895 0.00 0.00 0.00 3.55
3225 6133 0.601311 GAGCTGCCGAAGTCACAGTT 60.601 55.000 0.00 0.00 0.00 3.16
3226 6134 0.882042 AGCTGCCGAAGTCACAGTTG 60.882 55.000 0.00 0.00 0.00 3.16
3227 6135 0.880278 GCTGCCGAAGTCACAGTTGA 60.880 55.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.683973 CCCGATTGCTAGAGCTCCAT 59.316 55.000 10.93 0.00 42.66 3.41
41 42 0.669077 AGTACGCCCGATTGCTAGAG 59.331 55.000 0.00 0.00 0.00 2.43
45 46 2.017559 GAGGAGTACGCCCGATTGCT 62.018 60.000 12.54 0.00 0.00 3.91
104 106 2.851263 ACACCAGCGTTGAAATCCTA 57.149 45.000 0.00 0.00 0.00 2.94
142 145 1.178276 CACCAAGCTCTCCTACGAGT 58.822 55.000 0.00 0.00 37.40 4.18
170 173 0.031857 CGCTGCAGGAGATCTTCGAT 59.968 55.000 17.12 0.00 0.00 3.59
194 197 1.590932 CATTTGGCCTCAGATCGGAG 58.409 55.000 15.19 15.19 34.62 4.63
238 241 1.494721 TCCAACTTGCTCTTTCCCACT 59.505 47.619 0.00 0.00 0.00 4.00
246 257 1.558756 CCTCTCCATCCAACTTGCTCT 59.441 52.381 0.00 0.00 0.00 4.09
250 261 0.250234 TCGCCTCTCCATCCAACTTG 59.750 55.000 0.00 0.00 0.00 3.16
335 363 3.311596 CCGTTCGGTTTCTTCAGAAAACT 59.688 43.478 14.06 0.00 46.57 2.66
344 372 3.351416 GCGCCCGTTCGGTTTCTT 61.351 61.111 10.36 0.00 0.00 2.52
426 458 1.651737 TTTACTGGGCTGCTAGGTCA 58.348 50.000 0.00 0.00 0.00 4.02
431 463 3.438781 CGTTTTCATTTACTGGGCTGCTA 59.561 43.478 0.00 0.00 0.00 3.49
447 479 2.552768 GGGCGTTCGGTCGTTTTC 59.447 61.111 0.00 0.00 0.00 2.29
560 608 2.358125 CCGACATTGGTGACCGCA 60.358 61.111 0.00 0.00 0.00 5.69
563 611 2.750237 GGGCCGACATTGGTGACC 60.750 66.667 0.00 0.00 0.00 4.02
570 618 2.047274 CACTCGTGGGCCGACATT 60.047 61.111 18.72 0.00 41.60 2.71
571 619 4.760047 GCACTCGTGGGCCGACAT 62.760 66.667 18.72 0.00 41.60 3.06
588 636 2.252260 CGTTTTGGCGTGGCAGAG 59.748 61.111 0.00 0.00 0.00 3.35
591 639 3.959975 GAGCGTTTTGGCGTGGCA 61.960 61.111 0.00 0.00 38.18 4.92
637 686 4.437659 GGCACCGCAACGAAGAATTAATAA 60.438 41.667 0.00 0.00 0.00 1.40
639 688 2.159435 GGCACCGCAACGAAGAATTAAT 60.159 45.455 0.00 0.00 0.00 1.40
660 710 9.729023 TTATCACTTTACAAAATGTGACACTTG 57.271 29.630 7.20 5.87 46.47 3.16
685 735 6.184789 ACCATCACATTAGGGTCGTAAAATT 58.815 36.000 0.00 0.00 0.00 1.82
695 745 2.710096 ACGGAACCATCACATTAGGG 57.290 50.000 0.00 0.00 0.00 3.53
712 1570 1.066286 TCCCCACGGGTAAAATGTACG 60.066 52.381 0.41 0.00 44.74 3.67
724 1582 0.828022 TGTAGTATGCTTCCCCACGG 59.172 55.000 0.00 0.00 0.00 4.94
776 1639 5.410924 GTCTTGGGGATAAAAACTTGATGC 58.589 41.667 0.00 0.00 0.00 3.91
963 3425 0.257039 GAGGTAGGGGTAGGACACGA 59.743 60.000 0.00 0.00 0.00 4.35
1106 3579 0.539986 GCAAGATACGGGAAGGGTGA 59.460 55.000 0.00 0.00 0.00 4.02
1497 3970 2.892425 GTCGGCGGCTTCATGGAG 60.892 66.667 3.23 0.00 0.00 3.86
1637 4110 3.181967 CGACGCTTTCGCTCCCTG 61.182 66.667 0.00 0.00 41.87 4.45
1859 4332 2.222027 GGAATTGGCCTTACATCGAGG 58.778 52.381 3.32 0.00 37.35 4.63
1959 4436 9.900710 ACTGCTATTATTATACTCGACAAGAAG 57.099 33.333 0.00 0.00 0.00 2.85
1987 4468 4.937620 TGTTTCTGTTAGCTGGATCATCAC 59.062 41.667 0.00 0.00 0.00 3.06
2139 4620 0.250234 CGTGGGCAGAAGAGAATGGA 59.750 55.000 0.00 0.00 0.00 3.41
2227 4719 2.423577 CAAGTACAGTACCTGGCAACC 58.576 52.381 7.13 0.00 35.51 3.77
2303 4795 2.289547 GCGAGCGAGAGAGAGAAAGTAT 59.710 50.000 0.00 0.00 0.00 2.12
2308 4800 1.425267 CGAGCGAGCGAGAGAGAGAA 61.425 60.000 0.00 0.00 0.00 2.87
2309 4801 1.880796 CGAGCGAGCGAGAGAGAGA 60.881 63.158 0.00 0.00 0.00 3.10
2310 4802 2.625906 CGAGCGAGCGAGAGAGAG 59.374 66.667 0.00 0.00 0.00 3.20
2311 4803 3.568743 GCGAGCGAGCGAGAGAGA 61.569 66.667 1.41 0.00 0.00 3.10
2312 4804 2.591129 AAAGCGAGCGAGCGAGAGAG 62.591 60.000 1.41 0.00 43.00 3.20
2313 4805 2.585170 GAAAGCGAGCGAGCGAGAGA 62.585 60.000 1.41 0.00 43.00 3.10
2314 4806 2.202544 AAAGCGAGCGAGCGAGAG 60.203 61.111 1.41 0.00 43.00 3.20
2315 4807 2.202492 GAAAGCGAGCGAGCGAGA 60.202 61.111 1.41 0.00 43.00 4.04
2316 4808 2.202544 AGAAAGCGAGCGAGCGAG 60.203 61.111 1.41 0.00 43.00 5.03
2317 4809 2.202492 GAGAAAGCGAGCGAGCGA 60.202 61.111 1.41 0.00 43.00 4.93
2318 4810 2.202544 AGAGAAAGCGAGCGAGCG 60.203 61.111 0.00 0.00 43.00 5.03
2319 4811 2.220887 CGAGAGAAAGCGAGCGAGC 61.221 63.158 0.00 0.00 37.41 5.03
2320 4812 1.131037 CACGAGAGAAAGCGAGCGAG 61.131 60.000 0.00 0.00 0.00 5.03
2321 4813 1.154207 CACGAGAGAAAGCGAGCGA 60.154 57.895 0.00 0.00 0.00 4.93
2322 4814 0.179197 TACACGAGAGAAAGCGAGCG 60.179 55.000 0.00 0.00 0.00 5.03
2323 4815 2.196295 ATACACGAGAGAAAGCGAGC 57.804 50.000 0.00 0.00 0.00 5.03
2324 4816 4.539509 ACTATACACGAGAGAAAGCGAG 57.460 45.455 0.00 0.00 0.00 5.03
2325 4817 4.155462 ACAACTATACACGAGAGAAAGCGA 59.845 41.667 0.00 0.00 0.00 4.93
2326 4818 4.413087 ACAACTATACACGAGAGAAAGCG 58.587 43.478 0.00 0.00 0.00 4.68
2327 4819 5.972382 CCTACAACTATACACGAGAGAAAGC 59.028 44.000 0.00 0.00 0.00 3.51
2330 4822 5.503927 ACCCTACAACTATACACGAGAGAA 58.496 41.667 0.00 0.00 0.00 2.87
2337 4829 6.331061 CACAGAAGACCCTACAACTATACAC 58.669 44.000 0.00 0.00 0.00 2.90
2356 4848 5.290493 AGATTACAACACAAGACCACAGA 57.710 39.130 0.00 0.00 0.00 3.41
2357 4849 6.223852 ACTAGATTACAACACAAGACCACAG 58.776 40.000 0.00 0.00 0.00 3.66
2358 4850 6.169557 ACTAGATTACAACACAAGACCACA 57.830 37.500 0.00 0.00 0.00 4.17
2365 4857 8.141298 TGGATTAGGACTAGATTACAACACAA 57.859 34.615 0.00 0.00 0.00 3.33
2380 4872 3.391296 TGGCAACCTAGATGGATTAGGAC 59.609 47.826 5.38 0.00 40.12 3.85
2396 4891 4.273480 ACAGATTATACGAAGCATGGCAAC 59.727 41.667 0.00 0.00 0.00 4.17
2398 4893 4.071961 ACAGATTATACGAAGCATGGCA 57.928 40.909 0.00 0.00 0.00 4.92
2411 4906 7.643528 TCGAGTACGTACGATAACAGATTAT 57.356 36.000 24.41 0.00 40.69 1.28
2419 4914 5.767269 AGAGAGATCGAGTACGTACGATAA 58.233 41.667 24.41 7.69 46.71 1.75
2420 4915 5.369685 AGAGAGATCGAGTACGTACGATA 57.630 43.478 24.41 7.86 46.71 2.92
2423 4918 2.725723 GGAGAGAGATCGAGTACGTACG 59.274 54.545 19.49 15.01 40.69 3.67
2453 5314 2.884012 TGATGACGAAACCATGCAAACT 59.116 40.909 0.00 0.00 0.00 2.66
2525 5391 0.757188 CTCCCCACTATGACGAGCCT 60.757 60.000 0.00 0.00 0.00 4.58
2526 5392 1.043673 ACTCCCCACTATGACGAGCC 61.044 60.000 0.00 0.00 0.00 4.70
2527 5393 1.688772 TACTCCCCACTATGACGAGC 58.311 55.000 0.00 0.00 0.00 5.03
2528 5394 3.288964 AGTTACTCCCCACTATGACGAG 58.711 50.000 0.00 0.00 0.00 4.18
2529 5395 3.377253 AGTTACTCCCCACTATGACGA 57.623 47.619 0.00 0.00 0.00 4.20
2530 5396 4.885907 TCTAAGTTACTCCCCACTATGACG 59.114 45.833 0.00 0.00 0.00 4.35
2531 5397 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
2532 5398 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
2533 5399 7.061688 ACTAGTCTAAGTTACTCCCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
2534 5400 7.223472 ACTAGTCTAAGTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
2535 5401 6.649041 ACTAGTCTAAGTTACTCCCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
2536 5402 5.533333 ACTAGTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
2537 5403 6.660949 TGTTACTAGTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
2538 5404 6.793478 TGTTACTAGTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
2539 5405 7.894753 ATGTTACTAGTCTAAGTTACTCCCC 57.105 40.000 0.00 0.00 31.82 4.81
2540 5406 9.401058 TGTATGTTACTAGTCTAAGTTACTCCC 57.599 37.037 0.00 0.00 31.82 4.30
2569 5435 9.964354 TGAAGGTAGTAACATAGACTAGTAACA 57.036 33.333 0.00 0.00 30.08 2.41
2576 5442 8.871125 CCCATTATGAAGGTAGTAACATAGACT 58.129 37.037 0.00 0.00 0.00 3.24
2577 5443 8.648693 ACCCATTATGAAGGTAGTAACATAGAC 58.351 37.037 0.00 0.00 30.13 2.59
2578 5444 8.792830 ACCCATTATGAAGGTAGTAACATAGA 57.207 34.615 0.00 0.00 30.13 1.98
2588 5454 7.234782 CCTATGACACTACCCATTATGAAGGTA 59.765 40.741 0.00 0.00 35.02 3.08
2589 5455 5.975988 ATGACACTACCCATTATGAAGGT 57.024 39.130 0.00 0.00 37.69 3.50
2590 5456 6.043243 ACCTATGACACTACCCATTATGAAGG 59.957 42.308 0.00 0.00 0.00 3.46
2591 5457 6.931281 CACCTATGACACTACCCATTATGAAG 59.069 42.308 0.00 0.00 0.00 3.02
2592 5458 6.385759 ACACCTATGACACTACCCATTATGAA 59.614 38.462 0.00 0.00 0.00 2.57
2593 5459 5.903010 ACACCTATGACACTACCCATTATGA 59.097 40.000 0.00 0.00 0.00 2.15
2594 5460 5.991606 CACACCTATGACACTACCCATTATG 59.008 44.000 0.00 0.00 0.00 1.90
2595 5461 5.071788 CCACACCTATGACACTACCCATTAT 59.928 44.000 0.00 0.00 0.00 1.28
2596 5462 4.407621 CCACACCTATGACACTACCCATTA 59.592 45.833 0.00 0.00 0.00 1.90
2597 5463 3.199946 CCACACCTATGACACTACCCATT 59.800 47.826 0.00 0.00 0.00 3.16
2598 5464 2.771943 CCACACCTATGACACTACCCAT 59.228 50.000 0.00 0.00 0.00 4.00
2599 5465 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
2600 5466 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
2601 5467 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
2602 5468 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
2603 5469 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
2604 5470 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
2605 5471 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
2606 5472 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
2607 5473 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
2608 5474 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
2609 5475 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
2610 5476 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
2611 5477 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
2612 5478 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
2627 5493 9.556030 GTCTACAAAGTAATAAATGAAGGCAAC 57.444 33.333 0.00 0.00 0.00 4.17
2628 5494 9.515226 AGTCTACAAAGTAATAAATGAAGGCAA 57.485 29.630 0.00 0.00 0.00 4.52
2629 5495 9.162764 GAGTCTACAAAGTAATAAATGAAGGCA 57.837 33.333 0.00 0.00 0.00 4.75
2630 5496 9.162764 TGAGTCTACAAAGTAATAAATGAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
2641 5507 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
2642 5508 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
2643 5509 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
2644 5510 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
2645 5511 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
2646 5512 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
2647 5513 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
2648 5514 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
2649 5515 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
2650 5516 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
2651 5517 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
2652 5518 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
2653 5519 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
2654 5520 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
2655 5521 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
2656 5522 6.658816 TCATATAGCGGTTTCCAATGCATAAT 59.341 34.615 0.00 0.00 0.00 1.28
2657 5523 6.000840 TCATATAGCGGTTTCCAATGCATAA 58.999 36.000 0.00 0.00 0.00 1.90
2658 5524 5.555966 TCATATAGCGGTTTCCAATGCATA 58.444 37.500 0.00 0.00 0.00 3.14
2659 5525 4.397420 TCATATAGCGGTTTCCAATGCAT 58.603 39.130 0.00 0.00 0.00 3.96
2660 5526 3.814625 TCATATAGCGGTTTCCAATGCA 58.185 40.909 0.00 0.00 0.00 3.96
2661 5527 4.379813 CCATCATATAGCGGTTTCCAATGC 60.380 45.833 0.00 0.00 0.00 3.56
2662 5528 4.761739 ACCATCATATAGCGGTTTCCAATG 59.238 41.667 0.00 0.00 0.00 2.82
2663 5529 4.985538 ACCATCATATAGCGGTTTCCAAT 58.014 39.130 0.00 0.00 0.00 3.16
2664 5530 4.431416 ACCATCATATAGCGGTTTCCAA 57.569 40.909 0.00 0.00 0.00 3.53
2665 5531 5.163290 TGTTACCATCATATAGCGGTTTCCA 60.163 40.000 0.00 0.00 32.81 3.53
2666 5532 5.302360 TGTTACCATCATATAGCGGTTTCC 58.698 41.667 0.00 0.00 32.81 3.13
2667 5533 8.718102 ATATGTTACCATCATATAGCGGTTTC 57.282 34.615 0.00 0.00 36.92 2.78
2670 5536 9.764363 CATAATATGTTACCATCATATAGCGGT 57.236 33.333 0.00 0.00 37.46 5.68
2671 5537 9.764363 ACATAATATGTTACCATCATATAGCGG 57.236 33.333 0.00 0.00 41.63 5.52
2691 5557 8.371699 GGAGAGAGGCAAATAGAGTAACATAAT 58.628 37.037 0.00 0.00 0.00 1.28
2692 5558 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
2693 5559 7.069986 AGGAGAGAGGCAAATAGAGTAACATA 58.930 38.462 0.00 0.00 0.00 2.29
2694 5560 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
2695 5561 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
2696 5562 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
2697 5563 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
2698 5564 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
2699 5565 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
2700 5566 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
2701 5567 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
2702 5568 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
2703 5569 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
2704 5570 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
2705 5571 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
2706 5572 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
2707 5573 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
2708 5574 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
2709 5575 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
2710 5576 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
2711 5577 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
2712 5578 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
2713 5579 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
2714 5580 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
2715 5581 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
2716 5582 5.065218 GTGATGTGGCAAGTAGTTAATGAGG 59.935 44.000 0.00 0.00 0.00 3.86
2717 5583 5.065218 GGTGATGTGGCAAGTAGTTAATGAG 59.935 44.000 0.00 0.00 0.00 2.90
2718 5584 4.941263 GGTGATGTGGCAAGTAGTTAATGA 59.059 41.667 0.00 0.00 0.00 2.57
2719 5585 4.699735 TGGTGATGTGGCAAGTAGTTAATG 59.300 41.667 0.00 0.00 0.00 1.90
2720 5586 4.917385 TGGTGATGTGGCAAGTAGTTAAT 58.083 39.130 0.00 0.00 0.00 1.40
2721 5587 4.359434 TGGTGATGTGGCAAGTAGTTAA 57.641 40.909 0.00 0.00 0.00 2.01
2722 5588 4.359434 TTGGTGATGTGGCAAGTAGTTA 57.641 40.909 0.00 0.00 0.00 2.24
2723 5589 2.949177 TGGTGATGTGGCAAGTAGTT 57.051 45.000 0.00 0.00 0.00 2.24
2724 5590 2.949177 TTGGTGATGTGGCAAGTAGT 57.051 45.000 0.00 0.00 0.00 2.73
2725 5591 4.789012 AAATTGGTGATGTGGCAAGTAG 57.211 40.909 0.00 0.00 0.00 2.57
2726 5592 5.772672 AGTAAAATTGGTGATGTGGCAAGTA 59.227 36.000 0.00 0.00 0.00 2.24
2727 5593 4.588528 AGTAAAATTGGTGATGTGGCAAGT 59.411 37.500 0.00 0.00 0.00 3.16
2728 5594 5.138125 AGTAAAATTGGTGATGTGGCAAG 57.862 39.130 0.00 0.00 0.00 4.01
2729 5595 5.543507 AAGTAAAATTGGTGATGTGGCAA 57.456 34.783 0.00 0.00 0.00 4.52
2730 5596 6.210385 ACATAAGTAAAATTGGTGATGTGGCA 59.790 34.615 0.00 0.00 0.00 4.92
2731 5597 6.531240 CACATAAGTAAAATTGGTGATGTGGC 59.469 38.462 0.00 0.00 39.34 5.01
2733 5599 6.531240 GCCACATAAGTAAAATTGGTGATGTG 59.469 38.462 0.00 0.00 41.53 3.21
2734 5600 6.210385 TGCCACATAAGTAAAATTGGTGATGT 59.790 34.615 0.00 0.00 0.00 3.06
2735 5601 6.629128 TGCCACATAAGTAAAATTGGTGATG 58.371 36.000 0.00 0.00 0.00 3.07
2736 5602 6.849085 TGCCACATAAGTAAAATTGGTGAT 57.151 33.333 0.00 0.00 0.00 3.06
2737 5603 6.663093 AGATGCCACATAAGTAAAATTGGTGA 59.337 34.615 0.00 0.00 0.00 4.02
2738 5604 6.866480 AGATGCCACATAAGTAAAATTGGTG 58.134 36.000 0.00 0.00 0.00 4.17
2739 5605 8.632679 CATAGATGCCACATAAGTAAAATTGGT 58.367 33.333 0.00 0.00 0.00 3.67
2740 5606 8.632679 ACATAGATGCCACATAAGTAAAATTGG 58.367 33.333 0.00 0.00 0.00 3.16
2744 5610 9.899661 AGTAACATAGATGCCACATAAGTAAAA 57.100 29.630 0.00 0.00 0.00 1.52
2746 5612 9.976511 GTAGTAACATAGATGCCACATAAGTAA 57.023 33.333 0.00 0.00 0.00 2.24
2747 5613 8.582437 GGTAGTAACATAGATGCCACATAAGTA 58.418 37.037 0.00 0.00 0.00 2.24
2748 5614 7.290248 AGGTAGTAACATAGATGCCACATAAGT 59.710 37.037 0.00 0.00 0.00 2.24
2749 5615 7.671302 AGGTAGTAACATAGATGCCACATAAG 58.329 38.462 0.00 0.00 0.00 1.73
2750 5616 7.612065 AGGTAGTAACATAGATGCCACATAA 57.388 36.000 0.00 0.00 0.00 1.90
2751 5617 8.749354 CATAGGTAGTAACATAGATGCCACATA 58.251 37.037 0.00 0.00 0.00 2.29
2752 5618 7.235606 ACATAGGTAGTAACATAGATGCCACAT 59.764 37.037 0.00 0.00 0.00 3.21
2753 5619 6.553476 ACATAGGTAGTAACATAGATGCCACA 59.447 38.462 0.00 0.00 0.00 4.17
2754 5620 6.994221 ACATAGGTAGTAACATAGATGCCAC 58.006 40.000 0.00 0.00 0.00 5.01
2755 5621 7.612065 AACATAGGTAGTAACATAGATGCCA 57.388 36.000 0.00 0.00 0.00 4.92
2756 5622 8.804204 AGTAACATAGGTAGTAACATAGATGCC 58.196 37.037 0.00 0.00 0.00 4.40
2757 5623 9.843334 GAGTAACATAGGTAGTAACATAGATGC 57.157 37.037 0.00 0.00 0.00 3.91
2759 5625 9.531158 GGGAGTAACATAGGTAGTAACATAGAT 57.469 37.037 0.00 0.00 0.00 1.98
2760 5626 8.505246 TGGGAGTAACATAGGTAGTAACATAGA 58.495 37.037 0.00 0.00 0.00 1.98
2761 5627 8.574737 GTGGGAGTAACATAGGTAGTAACATAG 58.425 40.741 0.00 0.00 0.00 2.23
2762 5628 8.284435 AGTGGGAGTAACATAGGTAGTAACATA 58.716 37.037 0.00 0.00 0.00 2.29
2763 5629 7.130775 AGTGGGAGTAACATAGGTAGTAACAT 58.869 38.462 0.00 0.00 0.00 2.71
2764 5630 6.496743 AGTGGGAGTAACATAGGTAGTAACA 58.503 40.000 0.00 0.00 0.00 2.41
2765 5631 8.574737 CATAGTGGGAGTAACATAGGTAGTAAC 58.425 40.741 0.00 0.00 0.00 2.50
2766 5632 8.505246 TCATAGTGGGAGTAACATAGGTAGTAA 58.495 37.037 0.00 0.00 0.00 2.24
2767 5633 7.941238 GTCATAGTGGGAGTAACATAGGTAGTA 59.059 40.741 0.00 0.00 0.00 1.82
2768 5634 6.776603 GTCATAGTGGGAGTAACATAGGTAGT 59.223 42.308 0.00 0.00 0.00 2.73
2769 5635 6.208994 GGTCATAGTGGGAGTAACATAGGTAG 59.791 46.154 0.00 0.00 0.00 3.18
2770 5636 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
2771 5637 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
2772 5638 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
2773 5639 5.509840 GCTGGTCATAGTGGGAGTAACATAG 60.510 48.000 0.00 0.00 0.00 2.23
2774 5640 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
2775 5641 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
2776 5642 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
2777 5643 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
2778 5644 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
2779 5645 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
2780 5646 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
2781 5647 1.207791 AAGGCTGGTCATAGTGGGAG 58.792 55.000 0.00 0.00 0.00 4.30
2782 5648 2.398588 CTAAGGCTGGTCATAGTGGGA 58.601 52.381 0.00 0.00 0.00 4.37
2783 5649 1.202698 GCTAAGGCTGGTCATAGTGGG 60.203 57.143 0.00 0.00 35.22 4.61
2784 5650 1.202698 GGCTAAGGCTGGTCATAGTGG 60.203 57.143 0.00 0.00 38.73 4.00
2785 5651 1.539065 CGGCTAAGGCTGGTCATAGTG 60.539 57.143 0.00 0.00 40.90 2.74
2786 5652 0.753262 CGGCTAAGGCTGGTCATAGT 59.247 55.000 0.00 0.00 40.90 2.12
2787 5653 1.139058 AACGGCTAAGGCTGGTCATAG 59.861 52.381 0.00 0.00 41.59 2.23
2788 5654 1.200519 AACGGCTAAGGCTGGTCATA 58.799 50.000 0.00 0.00 41.59 2.15
2789 5655 1.991230 AACGGCTAAGGCTGGTCAT 59.009 52.632 0.00 0.00 41.59 3.06
2790 5656 3.478780 AACGGCTAAGGCTGGTCA 58.521 55.556 0.00 0.00 41.59 4.02
2795 5661 0.881796 GCAAAAGAACGGCTAAGGCT 59.118 50.000 0.00 0.00 38.73 4.58
2796 5662 0.881796 AGCAAAAGAACGGCTAAGGC 59.118 50.000 0.00 0.00 35.82 4.35
2797 5663 1.200020 CCAGCAAAAGAACGGCTAAGG 59.800 52.381 0.00 0.00 35.82 2.69
2798 5664 1.401539 GCCAGCAAAAGAACGGCTAAG 60.402 52.381 0.00 0.00 39.73 2.18
2799 5665 0.596082 GCCAGCAAAAGAACGGCTAA 59.404 50.000 0.00 0.00 39.73 3.09
2800 5666 2.253513 GCCAGCAAAAGAACGGCTA 58.746 52.632 0.00 0.00 39.73 3.93
2818 5684 4.884744 ACAGATATAGGCTGGCTATACGAG 59.115 45.833 27.06 21.22 37.69 4.18
2819 5685 4.856509 ACAGATATAGGCTGGCTATACGA 58.143 43.478 27.06 12.64 37.69 3.43
2820 5686 5.584253 AACAGATATAGGCTGGCTATACG 57.416 43.478 27.06 20.95 37.69 3.06
2821 5687 8.919145 AGAATAACAGATATAGGCTGGCTATAC 58.081 37.037 27.06 20.79 37.69 1.47
2822 5688 9.494055 AAGAATAACAGATATAGGCTGGCTATA 57.506 33.333 26.80 26.80 37.69 1.31
2824 5690 7.798710 AAGAATAACAGATATAGGCTGGCTA 57.201 36.000 13.67 13.67 37.69 3.93
2849 5715 3.364565 GGCAAAACGCATCGAGTAGAAAA 60.365 43.478 0.00 0.00 45.17 2.29
2850 5716 2.158841 GGCAAAACGCATCGAGTAGAAA 59.841 45.455 0.00 0.00 45.17 2.52
2851 5717 1.730064 GGCAAAACGCATCGAGTAGAA 59.270 47.619 0.00 0.00 45.17 2.10
2852 5718 1.355971 GGCAAAACGCATCGAGTAGA 58.644 50.000 0.00 0.00 45.17 2.59
2863 5729 0.443869 CAGATCAGACGGGCAAAACG 59.556 55.000 0.00 0.00 37.36 3.60
2897 5796 5.131142 ACGGCTATATACCTATACCTACGGT 59.869 44.000 0.00 0.00 40.16 4.83
2902 5801 6.051717 CACGTACGGCTATATACCTATACCT 58.948 44.000 21.06 0.00 0.00 3.08
3091 5995 8.339714 CGAGTGAAAAATCTACTCTACTAGGAG 58.660 40.741 0.00 0.00 38.87 3.69
3092 5996 7.828223 ACGAGTGAAAAATCTACTCTACTAGGA 59.172 37.037 0.00 0.00 38.87 2.94
3093 5997 7.911205 CACGAGTGAAAAATCTACTCTACTAGG 59.089 40.741 0.00 0.00 38.87 3.02
3094 5998 7.429920 GCACGAGTGAAAAATCTACTCTACTAG 59.570 40.741 7.50 0.00 38.87 2.57
3095 5999 7.249147 GCACGAGTGAAAAATCTACTCTACTA 58.751 38.462 7.50 0.00 38.87 1.82
3096 6000 6.094061 GCACGAGTGAAAAATCTACTCTACT 58.906 40.000 7.50 0.00 38.87 2.57
3169 6077 2.232941 TCCGAACAGGCCTTAAGTACTG 59.767 50.000 0.00 17.37 40.77 2.74
3170 6078 2.496470 CTCCGAACAGGCCTTAAGTACT 59.504 50.000 0.00 0.00 40.77 2.73
3171 6079 2.233186 ACTCCGAACAGGCCTTAAGTAC 59.767 50.000 0.00 0.00 40.77 2.73
3172 6080 2.494870 GACTCCGAACAGGCCTTAAGTA 59.505 50.000 0.00 0.00 40.77 2.24
3173 6081 1.275573 GACTCCGAACAGGCCTTAAGT 59.724 52.381 0.00 0.00 40.77 2.24
3174 6082 1.550976 AGACTCCGAACAGGCCTTAAG 59.449 52.381 0.00 0.00 40.77 1.85
3175 6083 1.549170 GAGACTCCGAACAGGCCTTAA 59.451 52.381 0.00 0.00 40.77 1.85
3176 6084 1.183549 GAGACTCCGAACAGGCCTTA 58.816 55.000 0.00 0.00 40.77 2.69
3177 6085 0.543174 AGAGACTCCGAACAGGCCTT 60.543 55.000 0.00 0.00 40.77 4.35
3178 6086 0.968393 GAGAGACTCCGAACAGGCCT 60.968 60.000 0.00 0.00 40.77 5.19
3179 6087 0.968393 AGAGAGACTCCGAACAGGCC 60.968 60.000 0.00 0.00 40.77 5.19
3180 6088 0.172352 CAGAGAGACTCCGAACAGGC 59.828 60.000 0.00 0.00 40.77 4.85
3181 6089 0.172352 GCAGAGAGACTCCGAACAGG 59.828 60.000 0.00 0.00 42.97 4.00
3182 6090 1.132262 GAGCAGAGAGACTCCGAACAG 59.868 57.143 0.00 0.00 0.00 3.16
3183 6091 1.169577 GAGCAGAGAGACTCCGAACA 58.830 55.000 0.00 0.00 0.00 3.18
3184 6092 0.454196 GGAGCAGAGAGACTCCGAAC 59.546 60.000 0.00 0.00 42.92 3.95
3185 6093 2.875188 GGAGCAGAGAGACTCCGAA 58.125 57.895 0.00 0.00 42.92 4.30
3186 6094 4.647825 GGAGCAGAGAGACTCCGA 57.352 61.111 0.00 0.00 42.92 4.55
3189 6097 1.392589 CTCCAGGAGCAGAGAGACTC 58.607 60.000 2.60 0.00 31.43 3.36
3190 6098 3.594453 CTCCAGGAGCAGAGAGACT 57.406 57.895 2.60 0.00 31.43 3.24
3200 6108 2.186384 CTTCGGCAGCTCCAGGAG 59.814 66.667 12.81 12.81 34.01 3.69
3201 6109 2.604686 ACTTCGGCAGCTCCAGGA 60.605 61.111 0.00 0.00 34.01 3.86
3202 6110 2.125350 GACTTCGGCAGCTCCAGG 60.125 66.667 0.00 0.00 34.01 4.45
3203 6111 1.739562 GTGACTTCGGCAGCTCCAG 60.740 63.158 0.00 0.00 34.01 3.86
3204 6112 2.343758 GTGACTTCGGCAGCTCCA 59.656 61.111 0.00 0.00 34.01 3.86
3205 6113 1.739562 CTGTGACTTCGGCAGCTCC 60.740 63.158 0.00 0.00 0.00 4.70
3206 6114 0.601311 AACTGTGACTTCGGCAGCTC 60.601 55.000 0.00 0.00 33.87 4.09
3207 6115 0.882042 CAACTGTGACTTCGGCAGCT 60.882 55.000 0.00 0.00 33.87 4.24
3208 6116 0.880278 TCAACTGTGACTTCGGCAGC 60.880 55.000 0.00 0.00 33.87 5.25
3209 6117 3.289128 TCAACTGTGACTTCGGCAG 57.711 52.632 0.00 0.00 36.41 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.