Multiple sequence alignment - TraesCS3B01G296000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G296000 chr3B 100.000 6610 0 0 1 6610 474366097 474372706 0.000000e+00 12207.0
1 TraesCS3B01G296000 chr3B 88.107 597 68 2 3895 4489 603366428 603367023 0.000000e+00 706.0
2 TraesCS3B01G296000 chr3B 77.953 254 42 12 4244 4487 723647192 723646943 5.340000e-31 147.0
3 TraesCS3B01G296000 chr3B 91.111 90 6 2 2894 2983 823908732 823908819 3.240000e-23 121.0
4 TraesCS3B01G296000 chr3B 91.111 90 6 2 2894 2983 824144759 824144846 3.240000e-23 121.0
5 TraesCS3B01G296000 chr3B 91.111 90 6 2 2894 2983 824169836 824169923 3.240000e-23 121.0
6 TraesCS3B01G296000 chr3B 87.143 70 4 5 2921 2990 603365367 603365431 2.560000e-09 75.0
7 TraesCS3B01G296000 chr3D 95.096 1978 59 17 4491 6462 364234164 364236109 0.000000e+00 3081.0
8 TraesCS3B01G296000 chr3D 95.803 1358 43 3 1546 2889 364232818 364234175 0.000000e+00 2180.0
9 TraesCS3B01G296000 chr3D 92.202 872 39 9 2 849 364231355 364232221 0.000000e+00 1206.0
10 TraesCS3B01G296000 chr3D 94.355 620 10 3 895 1511 364232225 364232822 0.000000e+00 928.0
11 TraesCS3B01G296000 chr3A 94.852 1962 74 13 949 2889 485521789 485523744 0.000000e+00 3038.0
12 TraesCS3B01G296000 chr3A 95.335 1908 66 9 1001 2889 485598480 485600383 0.000000e+00 3009.0
13 TraesCS3B01G296000 chr3A 93.193 1954 82 23 4489 6419 485600370 485602295 0.000000e+00 2824.0
14 TraesCS3B01G296000 chr3A 92.941 1955 84 26 4489 6419 485523731 485525655 0.000000e+00 2796.0
15 TraesCS3B01G296000 chr3A 90.969 908 46 12 2 877 485515345 485516248 0.000000e+00 1190.0
16 TraesCS3B01G296000 chr1A 88.020 1202 134 8 3299 4493 17319995 17321193 0.000000e+00 1413.0
17 TraesCS3B01G296000 chr1A 95.266 169 5 2 6442 6610 590581561 590581726 1.410000e-66 265.0
18 TraesCS3B01G296000 chr1A 82.979 141 14 6 2895 3027 17280394 17280532 1.160000e-22 119.0
19 TraesCS3B01G296000 chr1A 96.875 32 0 1 2851 2881 45553990 45553959 1.200000e-02 52.8
20 TraesCS3B01G296000 chr2B 88.395 1034 110 6 3466 4492 53403035 53404065 0.000000e+00 1236.0
21 TraesCS3B01G296000 chr2D 85.492 1158 132 18 3350 4491 617067937 617069074 0.000000e+00 1175.0
22 TraesCS3B01G296000 chr2D 100.000 28 0 0 2853 2880 349001155 349001128 1.200000e-02 52.8
23 TraesCS3B01G296000 chr7A 80.952 693 84 24 1262 1938 143743390 143742730 7.650000e-139 505.0
24 TraesCS3B01G296000 chr7A 77.460 630 120 19 3680 4295 74652690 74653311 2.270000e-94 357.0
25 TraesCS3B01G296000 chr7A 96.933 163 5 0 6448 6610 155383126 155382964 2.350000e-69 274.0
26 TraesCS3B01G296000 chr7A 94.737 38 2 0 2852 2889 238580328 238580365 7.160000e-05 60.2
27 TraesCS3B01G296000 chr4B 77.805 829 149 23 3677 4491 546114089 546114896 4.640000e-131 479.0
28 TraesCS3B01G296000 chr4B 98.113 159 1 2 6453 6610 591529290 591529133 6.530000e-70 276.0
29 TraesCS3B01G296000 chr5B 77.778 756 129 24 3750 4491 354507201 354507931 4.740000e-116 429.0
30 TraesCS3B01G296000 chr5B 98.101 158 3 0 6453 6610 336061391 336061548 6.530000e-70 276.0
31 TraesCS3B01G296000 chr5A 79.282 613 119 5 3884 4488 510287435 510288047 7.920000e-114 422.0
32 TraesCS3B01G296000 chr7B 78.289 608 124 5 3883 4484 682353779 682353174 1.040000e-102 385.0
33 TraesCS3B01G296000 chr7B 78.830 581 106 13 3908 4484 725642562 725643129 6.260000e-100 375.0
34 TraesCS3B01G296000 chr2A 79.560 455 70 16 2990 3438 34236021 34235584 3.000000e-78 303.0
35 TraesCS3B01G296000 chr6A 100.000 151 0 0 6460 6610 111895173 111895323 5.050000e-71 279.0
36 TraesCS3B01G296000 chr6A 100.000 151 0 0 6460 6610 615886659 615886509 5.050000e-71 279.0
37 TraesCS3B01G296000 chr6A 96.933 163 4 1 6448 6610 260373329 260373168 8.450000e-69 272.0
38 TraesCS3B01G296000 chr1B 98.718 156 2 0 6455 6610 537303950 537303795 1.820000e-70 278.0
39 TraesCS3B01G296000 chr6B 98.101 158 3 0 6453 6610 532181655 532181812 6.530000e-70 276.0
40 TraesCS3B01G296000 chr5D 74.449 227 48 9 3790 4010 254418304 254418082 9.130000e-14 89.8
41 TraesCS3B01G296000 chr4A 100.000 31 0 0 2851 2881 460450453 460450423 2.570000e-04 58.4
42 TraesCS3B01G296000 chr4A 100.000 28 0 0 2853 2880 574527130 574527157 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G296000 chr3B 474366097 474372706 6609 False 12207.00 12207 100.0000 1 6610 1 chr3B.!!$F1 6609
1 TraesCS3B01G296000 chr3B 603365367 603367023 1656 False 390.50 706 87.6250 2921 4489 2 chr3B.!!$F5 1568
2 TraesCS3B01G296000 chr3D 364231355 364236109 4754 False 1848.75 3081 94.3640 2 6462 4 chr3D.!!$F1 6460
3 TraesCS3B01G296000 chr3A 485521789 485525655 3866 False 2917.00 3038 93.8965 949 6419 2 chr3A.!!$F2 5470
4 TraesCS3B01G296000 chr3A 485598480 485602295 3815 False 2916.50 3009 94.2640 1001 6419 2 chr3A.!!$F3 5418
5 TraesCS3B01G296000 chr3A 485515345 485516248 903 False 1190.00 1190 90.9690 2 877 1 chr3A.!!$F1 875
6 TraesCS3B01G296000 chr1A 17319995 17321193 1198 False 1413.00 1413 88.0200 3299 4493 1 chr1A.!!$F2 1194
7 TraesCS3B01G296000 chr2B 53403035 53404065 1030 False 1236.00 1236 88.3950 3466 4492 1 chr2B.!!$F1 1026
8 TraesCS3B01G296000 chr2D 617067937 617069074 1137 False 1175.00 1175 85.4920 3350 4491 1 chr2D.!!$F1 1141
9 TraesCS3B01G296000 chr7A 143742730 143743390 660 True 505.00 505 80.9520 1262 1938 1 chr7A.!!$R1 676
10 TraesCS3B01G296000 chr7A 74652690 74653311 621 False 357.00 357 77.4600 3680 4295 1 chr7A.!!$F1 615
11 TraesCS3B01G296000 chr4B 546114089 546114896 807 False 479.00 479 77.8050 3677 4491 1 chr4B.!!$F1 814
12 TraesCS3B01G296000 chr5B 354507201 354507931 730 False 429.00 429 77.7780 3750 4491 1 chr5B.!!$F2 741
13 TraesCS3B01G296000 chr5A 510287435 510288047 612 False 422.00 422 79.2820 3884 4488 1 chr5A.!!$F1 604
14 TraesCS3B01G296000 chr7B 682353174 682353779 605 True 385.00 385 78.2890 3883 4484 1 chr7B.!!$R1 601
15 TraesCS3B01G296000 chr7B 725642562 725643129 567 False 375.00 375 78.8300 3908 4484 1 chr7B.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 930 0.040058 TTAGGTACGAGCCCAGGTCA 59.960 55.0 0.0 0.0 0.00 4.02 F
891 937 0.323629 CGAGCCCAGGTCACCTAAAA 59.676 55.0 0.0 0.0 29.64 1.52 F
1688 1790 0.403271 AGCTGAGCCATTGACCACTT 59.597 50.0 0.0 0.0 0.00 3.16 F
2898 3007 0.263172 TTCTGGTTTTTGGCTCCCCA 59.737 50.0 0.0 0.0 40.06 4.96 F
2990 3099 0.033011 TCTCCCTTCTCCCTTCTCCG 60.033 60.0 0.0 0.0 0.00 4.63 F
4374 4877 1.043116 TAGTCGTGGCTATGCTGGCT 61.043 55.0 0.0 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2508 2617 3.713288 TGTACATCTATTGCGGCACTAC 58.287 45.455 0.05 0.0 0.00 2.73 R
2887 2996 3.264845 GGGGAGTGGGGAGCCAAA 61.265 66.667 0.00 0.0 0.00 3.28 R
2971 3080 0.033011 CGGAGAAGGGAGAAGGGAGA 60.033 60.000 0.00 0.0 0.00 3.71 R
3799 3972 1.562783 GCACTCCTTCCACTCCTAGT 58.437 55.000 0.00 0.0 0.00 2.57 R
4976 5486 1.463214 TTCCTCAAGGGCAGGGACA 60.463 57.895 0.00 0.0 35.41 4.02 R
6371 6915 0.038892 CAATCAACTGGGCTGTGTGC 60.039 55.000 0.00 0.0 41.94 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.923415 AGAAATTTCCCTCGAAATCCTGT 58.077 39.130 14.61 0.00 45.92 4.00
46 47 0.530744 TCCCTCGAAATCCTGTGACG 59.469 55.000 0.00 0.00 0.00 4.35
96 97 1.617322 TCCGTGCTAGAGACTTGTGT 58.383 50.000 0.00 0.00 0.00 3.72
215 216 1.064825 AGAATCACCGTGTTTCCCCT 58.935 50.000 15.65 0.00 28.84 4.79
216 217 2.027561 CAGAATCACCGTGTTTCCCCTA 60.028 50.000 15.65 0.00 28.84 3.53
316 317 4.099573 GTGGACGGATCTTCATCTCCTTTA 59.900 45.833 0.00 0.00 28.62 1.85
351 352 3.274288 GGCCCTCATGTTTCTGTAGAAG 58.726 50.000 0.00 0.00 35.21 2.85
447 448 4.563580 GCATCTTCCTCTTCAACTACCACA 60.564 45.833 0.00 0.00 0.00 4.17
551 552 1.840635 GGCCATCTTGAACCCTAGACT 59.159 52.381 0.00 0.00 0.00 3.24
614 626 3.790437 CAGCCCGTGGATCAGCCT 61.790 66.667 0.00 0.00 37.63 4.58
621 633 1.611673 CCGTGGATCAGCCTGAACTTT 60.612 52.381 0.00 0.00 37.63 2.66
636 648 4.836125 GAACTTTTCATGCTGGAGTTCA 57.164 40.909 18.09 0.00 43.39 3.18
646 658 2.142292 CTGGAGTTCAAGGGTGGGGG 62.142 65.000 0.00 0.00 0.00 5.40
675 687 3.882013 CAACAACACCGCCGTGCA 61.882 61.111 5.02 0.00 44.40 4.57
701 716 4.833390 CGAGAGGAAGAAAAACCCTACAT 58.167 43.478 0.00 0.00 0.00 2.29
803 848 1.371558 GGTGATATCAGGCCCGACC 59.628 63.158 5.42 0.00 39.61 4.79
804 849 1.407656 GGTGATATCAGGCCCGACCA 61.408 60.000 5.42 0.00 43.14 4.02
805 850 0.249911 GTGATATCAGGCCCGACCAC 60.250 60.000 5.42 0.36 43.14 4.16
806 851 0.689412 TGATATCAGGCCCGACCACA 60.689 55.000 0.00 0.00 43.14 4.17
877 923 1.682323 CTTCCCTCTTAGGTACGAGCC 59.318 57.143 0.00 0.00 31.93 4.70
878 924 0.106318 TCCCTCTTAGGTACGAGCCC 60.106 60.000 0.00 0.00 31.93 5.19
879 925 0.396695 CCCTCTTAGGTACGAGCCCA 60.397 60.000 0.00 0.00 31.93 5.36
880 926 1.033574 CCTCTTAGGTACGAGCCCAG 58.966 60.000 0.00 0.00 0.00 4.45
881 927 1.033574 CTCTTAGGTACGAGCCCAGG 58.966 60.000 0.00 0.00 0.00 4.45
882 928 0.333993 TCTTAGGTACGAGCCCAGGT 59.666 55.000 0.00 0.00 0.00 4.00
883 929 0.745468 CTTAGGTACGAGCCCAGGTC 59.255 60.000 0.00 0.00 0.00 3.85
884 930 0.040058 TTAGGTACGAGCCCAGGTCA 59.960 55.000 0.00 0.00 0.00 4.02
885 931 0.682209 TAGGTACGAGCCCAGGTCAC 60.682 60.000 0.00 0.00 0.00 3.67
886 932 2.577593 GTACGAGCCCAGGTCACC 59.422 66.667 0.00 0.00 0.00 4.02
887 933 1.982938 GTACGAGCCCAGGTCACCT 60.983 63.158 0.00 0.00 0.00 4.00
888 934 0.682209 GTACGAGCCCAGGTCACCTA 60.682 60.000 0.00 0.00 29.64 3.08
889 935 0.040058 TACGAGCCCAGGTCACCTAA 59.960 55.000 0.00 0.00 29.64 2.69
890 936 0.834687 ACGAGCCCAGGTCACCTAAA 60.835 55.000 0.00 0.00 29.64 1.85
891 937 0.323629 CGAGCCCAGGTCACCTAAAA 59.676 55.000 0.00 0.00 29.64 1.52
892 938 1.271163 CGAGCCCAGGTCACCTAAAAA 60.271 52.381 0.00 0.00 29.64 1.94
917 963 2.125350 GAGCCCAGGAAGCGACAG 60.125 66.667 0.00 0.00 34.64 3.51
955 1001 9.454859 AAGACAGAAAAAGAAAGAGAGAAAGAA 57.545 29.630 0.00 0.00 0.00 2.52
969 1015 9.847706 AAGAGAGAAAGAAAGAAACAAAGAAAC 57.152 29.630 0.00 0.00 0.00 2.78
1150 1196 7.551617 TCGACAAGTTTAAGGTTTTCTTCTCTT 59.448 33.333 0.00 0.00 36.93 2.85
1151 1197 8.823818 CGACAAGTTTAAGGTTTTCTTCTCTTA 58.176 33.333 0.00 0.00 36.93 2.10
1201 1250 2.349886 GTGCGAATCTGAGGTTCATGAC 59.650 50.000 6.25 0.00 0.00 3.06
1231 1280 3.330701 AGGTGGATGCTTCTTTCTAACCA 59.669 43.478 0.00 0.00 0.00 3.67
1298 1347 0.486879 AGGGCAAAATTGGTCCCTCA 59.513 50.000 5.75 0.00 45.63 3.86
1384 1433 2.315925 AGTCATACAGAATGGCGGTG 57.684 50.000 0.00 0.00 45.34 4.94
1409 1459 2.356125 CCTTTGTCTAGGGGTGACATGG 60.356 54.545 0.00 0.00 42.95 3.66
1506 1556 9.626045 GTTAGGAATAGTTTGATTTGTTTCCAG 57.374 33.333 0.00 0.00 34.86 3.86
1507 1557 6.691508 AGGAATAGTTTGATTTGTTTCCAGC 58.308 36.000 0.00 0.00 34.86 4.85
1508 1558 6.267471 AGGAATAGTTTGATTTGTTTCCAGCA 59.733 34.615 0.00 0.00 34.86 4.41
1509 1559 7.038799 AGGAATAGTTTGATTTGTTTCCAGCAT 60.039 33.333 0.00 0.00 34.86 3.79
1510 1560 8.250332 GGAATAGTTTGATTTGTTTCCAGCATA 58.750 33.333 0.00 0.00 33.10 3.14
1511 1561 9.807649 GAATAGTTTGATTTGTTTCCAGCATAT 57.192 29.630 0.00 0.00 0.00 1.78
1515 1565 9.995003 AGTTTGATTTGTTTCCAGCATATAAAA 57.005 25.926 0.00 0.00 0.00 1.52
1517 1567 9.995003 TTTGATTTGTTTCCAGCATATAAAACT 57.005 25.926 0.00 0.00 33.75 2.66
1518 1568 8.984891 TGATTTGTTTCCAGCATATAAAACTG 57.015 30.769 0.00 0.00 33.75 3.16
1528 1578 8.450578 CCAGCATATAAAACTGGTCTTATGAA 57.549 34.615 9.74 0.00 44.91 2.57
1529 1579 8.562892 CCAGCATATAAAACTGGTCTTATGAAG 58.437 37.037 9.74 0.00 44.91 3.02
1530 1580 9.113838 CAGCATATAAAACTGGTCTTATGAAGT 57.886 33.333 0.00 0.00 0.00 3.01
1531 1581 9.113838 AGCATATAAAACTGGTCTTATGAAGTG 57.886 33.333 0.00 0.00 0.00 3.16
1532 1582 8.893727 GCATATAAAACTGGTCTTATGAAGTGT 58.106 33.333 0.00 0.00 0.00 3.55
1537 1587 8.974060 AAAACTGGTCTTATGAAGTGTAGAAA 57.026 30.769 0.00 0.00 0.00 2.52
1538 1588 7.964604 AACTGGTCTTATGAAGTGTAGAAAC 57.035 36.000 0.00 0.00 0.00 2.78
1539 1589 7.062749 ACTGGTCTTATGAAGTGTAGAAACA 57.937 36.000 0.00 0.00 0.00 2.83
1540 1590 7.680730 ACTGGTCTTATGAAGTGTAGAAACAT 58.319 34.615 0.00 0.00 38.08 2.71
1541 1591 8.157476 ACTGGTCTTATGAAGTGTAGAAACATT 58.843 33.333 0.00 0.00 38.08 2.71
1542 1592 8.322906 TGGTCTTATGAAGTGTAGAAACATTG 57.677 34.615 0.00 0.00 38.08 2.82
1543 1593 7.094805 TGGTCTTATGAAGTGTAGAAACATTGC 60.095 37.037 0.00 0.00 38.08 3.56
1544 1594 7.119846 GGTCTTATGAAGTGTAGAAACATTGCT 59.880 37.037 0.00 0.00 38.08 3.91
1570 1660 6.587226 GCATAGACATATCTTCAGCTTCTGAG 59.413 42.308 0.00 0.00 41.75 3.35
1611 1702 1.384525 CCTTTTTGACCACACGACCA 58.615 50.000 0.00 0.00 0.00 4.02
1685 1787 2.877097 TTTAGCTGAGCCATTGACCA 57.123 45.000 0.00 0.00 0.00 4.02
1688 1790 0.403271 AGCTGAGCCATTGACCACTT 59.597 50.000 0.00 0.00 0.00 3.16
1961 2068 5.109210 GCCTATTTGAAACCTATTGTTGCC 58.891 41.667 0.00 0.00 37.23 4.52
1962 2069 5.105351 GCCTATTTGAAACCTATTGTTGCCT 60.105 40.000 0.00 0.00 37.23 4.75
2172 2279 5.933187 ATTAAACGGCAAATTTCCAAACC 57.067 34.783 0.00 0.00 0.00 3.27
2372 2481 6.811253 TTTATCTGCGATTACCTTGTGTTT 57.189 33.333 0.00 0.00 0.00 2.83
2373 2482 4.685169 ATCTGCGATTACCTTGTGTTTG 57.315 40.909 0.00 0.00 0.00 2.93
2391 2500 8.305441 TGTGTTTGGTTTCTTTTTCTTTTCTC 57.695 30.769 0.00 0.00 0.00 2.87
2394 2503 9.203421 TGTTTGGTTTCTTTTTCTTTTCTCTTC 57.797 29.630 0.00 0.00 0.00 2.87
2458 2567 0.611714 TAGGAAGAACTGGGGCGAAC 59.388 55.000 0.00 0.00 0.00 3.95
2739 2848 5.486735 TTATTTCTCAAGTCCCGGTAACA 57.513 39.130 0.00 0.00 0.00 2.41
2802 2911 4.901197 TGGAACAAACTGCTATACCTCA 57.099 40.909 0.00 0.00 31.92 3.86
2833 2942 6.028040 CAGTTGTTGCAGCAAAATATATGC 57.972 37.500 18.08 2.98 44.15 3.14
2887 2996 6.095720 TCGTTCCAAAATAAGTGTTCTGGTTT 59.904 34.615 0.00 0.00 0.00 3.27
2888 2997 6.754675 CGTTCCAAAATAAGTGTTCTGGTTTT 59.245 34.615 0.00 0.00 0.00 2.43
2889 2998 7.276878 CGTTCCAAAATAAGTGTTCTGGTTTTT 59.723 33.333 0.00 0.00 0.00 1.94
2890 2999 8.387354 GTTCCAAAATAAGTGTTCTGGTTTTTG 58.613 33.333 0.00 0.00 33.02 2.44
2891 3000 7.044798 TCCAAAATAAGTGTTCTGGTTTTTGG 58.955 34.615 14.88 14.88 41.97 3.28
2892 3001 6.238347 CCAAAATAAGTGTTCTGGTTTTTGGC 60.238 38.462 10.30 0.00 38.84 4.52
2893 3002 5.869649 AATAAGTGTTCTGGTTTTTGGCT 57.130 34.783 0.00 0.00 0.00 4.75
2894 3003 3.801114 AAGTGTTCTGGTTTTTGGCTC 57.199 42.857 0.00 0.00 0.00 4.70
2895 3004 2.031870 AGTGTTCTGGTTTTTGGCTCC 58.968 47.619 0.00 0.00 0.00 4.70
2896 3005 1.068588 GTGTTCTGGTTTTTGGCTCCC 59.931 52.381 0.00 0.00 0.00 4.30
2897 3006 0.679505 GTTCTGGTTTTTGGCTCCCC 59.320 55.000 0.00 0.00 0.00 4.81
2898 3007 0.263172 TTCTGGTTTTTGGCTCCCCA 59.737 50.000 0.00 0.00 40.06 4.96
2899 3008 0.469144 TCTGGTTTTTGGCTCCCCAC 60.469 55.000 0.00 0.00 41.97 4.61
2900 3009 0.469892 CTGGTTTTTGGCTCCCCACT 60.470 55.000 0.00 0.00 41.97 4.00
2901 3010 0.469144 TGGTTTTTGGCTCCCCACTC 60.469 55.000 0.00 0.00 41.97 3.51
2902 3011 1.185618 GGTTTTTGGCTCCCCACTCC 61.186 60.000 0.00 0.00 41.97 3.85
2903 3012 1.155155 TTTTTGGCTCCCCACTCCC 59.845 57.895 0.00 0.00 41.97 4.30
2904 3013 2.380571 TTTTTGGCTCCCCACTCCCC 62.381 60.000 0.00 0.00 41.97 4.81
2905 3014 3.829311 TTTGGCTCCCCACTCCCCT 62.829 63.158 0.00 0.00 41.97 4.79
2906 3015 4.741239 TGGCTCCCCACTCCCCTC 62.741 72.222 0.00 0.00 35.79 4.30
2969 3078 3.412408 GCCTCCAACCCCTCCCTC 61.412 72.222 0.00 0.00 0.00 4.30
2971 3080 2.456840 CTCCAACCCCTCCCTCCT 59.543 66.667 0.00 0.00 0.00 3.69
2973 3082 2.184631 TCCAACCCCTCCCTCCTCT 61.185 63.158 0.00 0.00 0.00 3.69
2977 3086 3.039526 CCCCTCCCTCCTCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
2978 3087 2.652113 CCCCTCCCTCCTCTCCCTT 61.652 68.421 0.00 0.00 0.00 3.95
2984 3093 1.598856 CCCTCCTCTCCCTTCTCCCT 61.599 65.000 0.00 0.00 0.00 4.20
2990 3099 0.033011 TCTCCCTTCTCCCTTCTCCG 60.033 60.000 0.00 0.00 0.00 4.63
2993 3102 2.496817 CTTCTCCCTTCTCCGGCG 59.503 66.667 0.00 0.00 0.00 6.46
2994 3103 3.075005 TTCTCCCTTCTCCGGCGG 61.075 66.667 22.51 22.51 0.00 6.13
3136 3300 2.349755 GTTCCGGGCAGCAAGGTA 59.650 61.111 0.00 0.00 0.00 3.08
3144 3308 4.408821 CAGCAAGGTAGCGGGGCA 62.409 66.667 7.93 0.00 40.15 5.36
3148 3312 3.400054 AAGGTAGCGGGGCACTCC 61.400 66.667 0.00 0.00 0.00 3.85
3160 3324 2.029518 CACTCCTGTGCTGCGACA 59.970 61.111 0.00 0.00 37.38 4.35
3179 3343 4.559063 CCAGATCTGGCCGGCAGG 62.559 72.222 28.45 19.94 44.73 4.85
3182 3346 4.247380 GATCTGGCCGGCAGGAGG 62.247 72.222 30.85 12.64 41.02 4.30
3256 3420 2.740055 CAGACAGCGGTGGTGCTC 60.740 66.667 20.20 7.21 45.23 4.26
3257 3421 4.008933 AGACAGCGGTGGTGCTCC 62.009 66.667 20.20 0.00 45.23 4.70
3258 3422 4.008933 GACAGCGGTGGTGCTCCT 62.009 66.667 20.20 0.00 45.23 3.69
3259 3423 3.537206 GACAGCGGTGGTGCTCCTT 62.537 63.158 20.20 0.00 45.23 3.36
3260 3424 3.052082 CAGCGGTGGTGCTCCTTG 61.052 66.667 6.74 0.00 45.23 3.61
3261 3425 4.335647 AGCGGTGGTGCTCCTTGG 62.336 66.667 6.34 0.00 42.95 3.61
3264 3428 3.971702 GGTGGTGCTCCTTGGCCT 61.972 66.667 3.32 0.00 34.23 5.19
3265 3429 2.674380 GTGGTGCTCCTTGGCCTG 60.674 66.667 3.32 0.00 34.23 4.85
3266 3430 4.666253 TGGTGCTCCTTGGCCTGC 62.666 66.667 3.32 1.12 34.23 4.85
3267 3431 4.666253 GGTGCTCCTTGGCCTGCA 62.666 66.667 3.32 4.02 0.00 4.41
3268 3432 2.598394 GTGCTCCTTGGCCTGCAA 60.598 61.111 3.32 0.00 37.17 4.08
3269 3433 2.282674 TGCTCCTTGGCCTGCAAG 60.283 61.111 3.32 0.00 32.12 4.01
3270 3434 3.756727 GCTCCTTGGCCTGCAAGC 61.757 66.667 3.32 0.00 0.00 4.01
3271 3435 3.437795 CTCCTTGGCCTGCAAGCG 61.438 66.667 3.32 0.00 0.00 4.68
3278 3442 4.774503 GCCTGCAAGCGGCTCTCT 62.775 66.667 16.71 0.00 44.17 3.10
3279 3443 2.818714 CCTGCAAGCGGCTCTCTG 60.819 66.667 1.45 0.00 45.15 3.35
3280 3444 2.818714 CTGCAAGCGGCTCTCTGG 60.819 66.667 1.45 0.00 45.15 3.86
3281 3445 3.602513 CTGCAAGCGGCTCTCTGGT 62.603 63.158 1.45 0.00 45.15 4.00
3282 3446 3.123620 GCAAGCGGCTCTCTGGTG 61.124 66.667 1.45 0.00 40.25 4.17
3283 3447 3.123620 CAAGCGGCTCTCTGGTGC 61.124 66.667 1.45 0.00 0.00 5.01
3284 3448 4.749310 AAGCGGCTCTCTGGTGCG 62.749 66.667 1.45 0.00 33.30 5.34
3431 3596 2.872557 CTGGACACCAGCAATGCG 59.127 61.111 0.00 0.00 45.13 4.73
3463 3628 1.449778 GCTCGGTCCTAGGGTTTGC 60.450 63.158 9.46 4.04 0.00 3.68
3464 3629 1.900545 GCTCGGTCCTAGGGTTTGCT 61.901 60.000 9.46 0.00 0.00 3.91
3474 3639 2.436109 GGTTTGCTCCTGGGCAGA 59.564 61.111 9.31 3.71 43.39 4.26
3507 3672 3.140814 GGGCAGATCGGGGTTTGC 61.141 66.667 0.00 0.00 35.87 3.68
3537 3703 1.603739 GTGAGGTTGGTCTTGGCCC 60.604 63.158 0.00 0.00 0.00 5.80
3556 3722 4.807039 GGATGCGCCCGTGTACGT 62.807 66.667 4.18 0.00 37.74 3.57
3572 3738 2.935191 GTTGTCGTCATGCGTGCA 59.065 55.556 0.00 0.00 42.13 4.57
3594 3766 4.642488 TCGGTGGTGGTGGCCCTA 62.642 66.667 0.00 0.00 0.00 3.53
3648 3820 1.446445 CCACGGATTTGGCGTCGTA 60.446 57.895 0.00 0.00 34.31 3.43
3875 4050 1.923395 GGATGGGTGGTGGGTCTCA 60.923 63.158 0.00 0.00 0.00 3.27
3941 4428 2.437359 CTTTCCGGCAGGCTCCAG 60.437 66.667 0.00 0.00 37.47 3.86
4115 4603 3.231736 ACGGGTGAGTTGCCGAGT 61.232 61.111 0.00 0.00 0.00 4.18
4122 4610 1.221466 TGAGTTGCCGAGTGAAAGCG 61.221 55.000 0.00 0.00 0.00 4.68
4179 4667 5.235516 GGGTGTCGTTATCTTCTTGAAGAA 58.764 41.667 15.76 7.49 32.50 2.52
4208 4697 2.432874 TGGTTCTTCTCTTCGTGGTGAA 59.567 45.455 0.00 0.00 34.74 3.18
4313 4812 2.287788 GGTTTCTTAGGTCGTGTCGTCA 60.288 50.000 0.00 0.00 0.00 4.35
4374 4877 1.043116 TAGTCGTGGCTATGCTGGCT 61.043 55.000 0.00 0.00 0.00 4.75
4442 4949 2.138596 TCGTTCCACCGTGTAACTTC 57.861 50.000 5.55 0.00 31.75 3.01
4493 5003 2.622064 AAGCCTGTTTCGAGAGTGTT 57.378 45.000 0.00 0.00 0.00 3.32
4494 5004 2.156343 AGCCTGTTTCGAGAGTGTTC 57.844 50.000 0.00 0.00 0.00 3.18
4495 5005 1.689273 AGCCTGTTTCGAGAGTGTTCT 59.311 47.619 0.00 0.00 36.01 3.01
4496 5006 1.795286 GCCTGTTTCGAGAGTGTTCTG 59.205 52.381 0.00 0.00 32.53 3.02
4497 5007 2.408050 CCTGTTTCGAGAGTGTTCTGG 58.592 52.381 0.00 0.00 32.53 3.86
4498 5008 2.224066 CCTGTTTCGAGAGTGTTCTGGT 60.224 50.000 0.00 0.00 32.53 4.00
4499 5009 3.458189 CTGTTTCGAGAGTGTTCTGGTT 58.542 45.455 0.00 0.00 32.53 3.67
4712 5222 8.459521 TTTTGTGTCTTTGTCTGTTAAATGTG 57.540 30.769 0.00 0.00 0.00 3.21
5133 5652 2.489329 CGGGCAGTTCATGTTCATCTTT 59.511 45.455 0.00 0.00 0.00 2.52
5134 5653 3.057315 CGGGCAGTTCATGTTCATCTTTT 60.057 43.478 0.00 0.00 0.00 2.27
5135 5654 4.488879 GGGCAGTTCATGTTCATCTTTTC 58.511 43.478 0.00 0.00 0.00 2.29
5136 5655 4.022068 GGGCAGTTCATGTTCATCTTTTCA 60.022 41.667 0.00 0.00 0.00 2.69
5137 5656 5.337009 GGGCAGTTCATGTTCATCTTTTCAT 60.337 40.000 0.00 0.00 0.00 2.57
5138 5657 5.803967 GGCAGTTCATGTTCATCTTTTCATC 59.196 40.000 0.00 0.00 0.00 2.92
5139 5658 6.349944 GGCAGTTCATGTTCATCTTTTCATCT 60.350 38.462 0.00 0.00 0.00 2.90
5512 6031 1.538849 CCAGCTTGCCACCACTTTTTC 60.539 52.381 0.00 0.00 0.00 2.29
5738 6258 0.543277 CAGCAGGCAGAATAGGTGGA 59.457 55.000 0.00 0.00 0.00 4.02
5788 6308 4.385358 TTTCCTGGTTTGCAGTTTTCTC 57.615 40.909 0.00 0.00 0.00 2.87
5817 6337 4.137543 GCCTTATGCAGGTTATGTAGCTT 58.862 43.478 0.00 0.00 46.07 3.74
5921 6441 0.179089 CAGCCTGCTTAGCGAGACAT 60.179 55.000 0.00 0.00 34.64 3.06
5975 6496 3.555547 GTGTACGATTATGACATGCTGCA 59.444 43.478 4.13 4.13 0.00 4.41
5976 6497 4.212004 GTGTACGATTATGACATGCTGCAT 59.788 41.667 9.81 9.81 0.00 3.96
5977 6498 4.815846 TGTACGATTATGACATGCTGCATT 59.184 37.500 13.38 4.72 0.00 3.56
5978 6499 4.219143 ACGATTATGACATGCTGCATTG 57.781 40.909 13.38 11.00 0.00 2.82
5979 6500 2.977829 CGATTATGACATGCTGCATTGC 59.022 45.455 13.38 8.39 0.00 3.56
5980 6501 3.304458 CGATTATGACATGCTGCATTGCT 60.304 43.478 13.38 0.00 0.00 3.91
5981 6502 3.430333 TTATGACATGCTGCATTGCTG 57.570 42.857 13.38 10.68 0.00 4.41
5982 6503 1.182667 ATGACATGCTGCATTGCTGT 58.817 45.000 13.38 9.50 0.00 4.40
5998 6519 2.426738 TGCTGTTGTTGCTGCTTTTACT 59.573 40.909 0.00 0.00 34.93 2.24
6012 6533 7.754924 TGCTGCTTTTACTGCAAATTATAAGTC 59.245 33.333 0.00 0.00 40.91 3.01
6058 6602 5.620738 TGATGGCTTAGCTATTCTTCTGT 57.379 39.130 4.24 0.00 27.76 3.41
6066 6610 7.011576 GGCTTAGCTATTCTTCTGTTTCTTACC 59.988 40.741 3.59 0.00 0.00 2.85
6070 6614 7.398024 AGCTATTCTTCTGTTTCTTACCATGT 58.602 34.615 0.00 0.00 0.00 3.21
6096 6640 2.354103 CCTGAAGCGTCCAGATCAGAAA 60.354 50.000 3.34 0.00 41.38 2.52
6194 6738 6.284475 GAGATTCACTCACATATTGCTGAC 57.716 41.667 0.00 0.00 44.36 3.51
6259 6803 2.198827 TACCCTGGCAGACAAACATG 57.801 50.000 17.94 0.00 0.00 3.21
6290 6834 2.229062 TCTTGTGACGTGATCTCCTGTC 59.771 50.000 0.00 0.00 0.00 3.51
6301 6845 1.661463 TCTCCTGTCATCCTGCCTTT 58.339 50.000 0.00 0.00 0.00 3.11
6333 6877 8.842358 TGTTATTTTAAACGAGAATCCTCTGT 57.158 30.769 0.00 0.00 37.28 3.41
6334 6878 8.932791 TGTTATTTTAAACGAGAATCCTCTGTC 58.067 33.333 0.00 0.00 37.28 3.51
6335 6879 9.152595 GTTATTTTAAACGAGAATCCTCTGTCT 57.847 33.333 0.00 0.00 37.28 3.41
6336 6880 7.602517 ATTTTAAACGAGAATCCTCTGTCTG 57.397 36.000 0.00 0.00 37.28 3.51
6349 6893 3.194329 CCTCTGTCTGCATGACTAGAACA 59.806 47.826 14.60 0.00 45.54 3.18
6358 6902 4.097135 TGCATGACTAGAACAGAGTAGCTC 59.903 45.833 0.00 0.00 0.00 4.09
6360 6904 5.733091 GCATGACTAGAACAGAGTAGCTCAG 60.733 48.000 0.00 0.00 32.06 3.35
6362 6906 5.182487 TGACTAGAACAGAGTAGCTCAGAG 58.818 45.833 0.00 0.00 32.06 3.35
6371 6915 3.389329 AGAGTAGCTCAGAGGAGAGAGAG 59.611 52.174 0.00 0.00 44.26 3.20
6405 6950 0.106669 GATTGGGGGCAGTTAGGGTC 60.107 60.000 0.00 0.00 0.00 4.46
6462 7010 5.891551 GGTAGGTATTGGAATGGTTGTGAAT 59.108 40.000 0.00 0.00 0.00 2.57
6463 7011 5.920193 AGGTATTGGAATGGTTGTGAATG 57.080 39.130 0.00 0.00 0.00 2.67
6464 7012 5.332743 AGGTATTGGAATGGTTGTGAATGT 58.667 37.500 0.00 0.00 0.00 2.71
6465 7013 5.779771 AGGTATTGGAATGGTTGTGAATGTT 59.220 36.000 0.00 0.00 0.00 2.71
6466 7014 5.868801 GGTATTGGAATGGTTGTGAATGTTG 59.131 40.000 0.00 0.00 0.00 3.33
6467 7015 4.333913 TTGGAATGGTTGTGAATGTTGG 57.666 40.909 0.00 0.00 0.00 3.77
6468 7016 2.632028 TGGAATGGTTGTGAATGTTGGG 59.368 45.455 0.00 0.00 0.00 4.12
6469 7017 2.028203 GGAATGGTTGTGAATGTTGGGG 60.028 50.000 0.00 0.00 0.00 4.96
6470 7018 2.692709 ATGGTTGTGAATGTTGGGGA 57.307 45.000 0.00 0.00 0.00 4.81
6471 7019 2.461300 TGGTTGTGAATGTTGGGGAA 57.539 45.000 0.00 0.00 0.00 3.97
6472 7020 2.035632 TGGTTGTGAATGTTGGGGAAC 58.964 47.619 0.00 0.00 0.00 3.62
6473 7021 1.000717 GGTTGTGAATGTTGGGGAACG 60.001 52.381 0.00 0.00 0.00 3.95
6474 7022 1.679153 GTTGTGAATGTTGGGGAACGT 59.321 47.619 0.00 0.00 0.00 3.99
6475 7023 2.879646 GTTGTGAATGTTGGGGAACGTA 59.120 45.455 0.00 0.00 0.00 3.57
6476 7024 2.773487 TGTGAATGTTGGGGAACGTAG 58.227 47.619 0.00 0.00 0.00 3.51
6477 7025 1.467342 GTGAATGTTGGGGAACGTAGC 59.533 52.381 0.00 0.00 0.00 3.58
6478 7026 1.072489 TGAATGTTGGGGAACGTAGCA 59.928 47.619 0.00 0.00 0.00 3.49
6479 7027 1.737793 GAATGTTGGGGAACGTAGCAG 59.262 52.381 0.00 0.00 0.00 4.24
6480 7028 0.981183 ATGTTGGGGAACGTAGCAGA 59.019 50.000 0.00 0.00 0.00 4.26
6481 7029 0.759959 TGTTGGGGAACGTAGCAGAA 59.240 50.000 0.00 0.00 0.00 3.02
6482 7030 1.141254 TGTTGGGGAACGTAGCAGAAA 59.859 47.619 0.00 0.00 0.00 2.52
6483 7031 2.224670 TGTTGGGGAACGTAGCAGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
6484 7032 2.817844 GTTGGGGAACGTAGCAGAAATT 59.182 45.455 0.00 0.00 0.00 1.82
6485 7033 2.706890 TGGGGAACGTAGCAGAAATTC 58.293 47.619 0.00 0.00 0.00 2.17
6486 7034 2.039216 TGGGGAACGTAGCAGAAATTCA 59.961 45.455 0.00 0.00 0.00 2.57
6487 7035 3.078837 GGGGAACGTAGCAGAAATTCAA 58.921 45.455 0.00 0.00 0.00 2.69
6488 7036 3.504520 GGGGAACGTAGCAGAAATTCAAA 59.495 43.478 0.00 0.00 0.00 2.69
6489 7037 4.022676 GGGGAACGTAGCAGAAATTCAAAA 60.023 41.667 0.00 0.00 0.00 2.44
6490 7038 5.336451 GGGGAACGTAGCAGAAATTCAAAAT 60.336 40.000 0.00 0.00 0.00 1.82
6491 7039 6.156519 GGGAACGTAGCAGAAATTCAAAATT 58.843 36.000 0.00 0.00 0.00 1.82
6492 7040 6.645003 GGGAACGTAGCAGAAATTCAAAATTT 59.355 34.615 0.00 0.00 0.00 1.82
6493 7041 7.170828 GGGAACGTAGCAGAAATTCAAAATTTT 59.829 33.333 0.00 0.00 0.00 1.82
6494 7042 8.214472 GGAACGTAGCAGAAATTCAAAATTTTC 58.786 33.333 0.00 0.00 33.08 2.29
6495 7043 7.637709 ACGTAGCAGAAATTCAAAATTTTCC 57.362 32.000 0.00 0.00 33.30 3.13
6496 7044 7.433680 ACGTAGCAGAAATTCAAAATTTTCCT 58.566 30.769 0.00 0.86 33.30 3.36
6497 7045 8.573035 ACGTAGCAGAAATTCAAAATTTTCCTA 58.427 29.630 0.00 0.00 33.30 2.94
6498 7046 8.850452 CGTAGCAGAAATTCAAAATTTTCCTAC 58.150 33.333 0.00 13.60 33.30 3.18
6499 7047 7.873739 AGCAGAAATTCAAAATTTTCCTACG 57.126 32.000 0.00 0.00 33.30 3.51
6500 7048 7.433680 AGCAGAAATTCAAAATTTTCCTACGT 58.566 30.769 0.00 0.00 33.30 3.57
6501 7049 7.382218 AGCAGAAATTCAAAATTTTCCTACGTG 59.618 33.333 0.00 0.00 33.30 4.49
6502 7050 7.169140 GCAGAAATTCAAAATTTTCCTACGTGT 59.831 33.333 0.00 0.00 33.30 4.49
6503 7051 8.690840 CAGAAATTCAAAATTTTCCTACGTGTC 58.309 33.333 0.00 0.00 33.30 3.67
6504 7052 8.410141 AGAAATTCAAAATTTTCCTACGTGTCA 58.590 29.630 0.00 0.00 33.30 3.58
6505 7053 7.924103 AATTCAAAATTTTCCTACGTGTCAC 57.076 32.000 0.00 0.00 0.00 3.67
6506 7054 5.427036 TCAAAATTTTCCTACGTGTCACC 57.573 39.130 0.00 0.00 0.00 4.02
6507 7055 4.882427 TCAAAATTTTCCTACGTGTCACCA 59.118 37.500 0.00 0.00 0.00 4.17
6508 7056 5.357314 TCAAAATTTTCCTACGTGTCACCAA 59.643 36.000 0.00 0.00 0.00 3.67
6509 7057 5.432885 AAATTTTCCTACGTGTCACCAAG 57.567 39.130 0.00 0.00 0.00 3.61
6510 7058 3.823281 TTTTCCTACGTGTCACCAAGA 57.177 42.857 0.00 0.00 0.00 3.02
6511 7059 4.345859 TTTTCCTACGTGTCACCAAGAT 57.654 40.909 0.00 0.00 0.00 2.40
6512 7060 3.587797 TTCCTACGTGTCACCAAGATC 57.412 47.619 0.00 0.00 0.00 2.75
6513 7061 2.803956 TCCTACGTGTCACCAAGATCT 58.196 47.619 0.00 0.00 0.00 2.75
6514 7062 3.959293 TCCTACGTGTCACCAAGATCTA 58.041 45.455 0.00 0.00 0.00 1.98
6515 7063 4.533815 TCCTACGTGTCACCAAGATCTAT 58.466 43.478 0.00 0.00 0.00 1.98
6516 7064 4.579340 TCCTACGTGTCACCAAGATCTATC 59.421 45.833 0.00 0.00 0.00 2.08
6517 7065 4.580995 CCTACGTGTCACCAAGATCTATCT 59.419 45.833 0.00 0.00 39.22 1.98
6518 7066 5.763698 CCTACGTGTCACCAAGATCTATCTA 59.236 44.000 0.00 0.00 35.76 1.98
6519 7067 6.431543 CCTACGTGTCACCAAGATCTATCTAT 59.568 42.308 0.00 0.00 35.76 1.98
6520 7068 6.078202 ACGTGTCACCAAGATCTATCTATG 57.922 41.667 0.00 0.00 35.76 2.23
6521 7069 5.010112 ACGTGTCACCAAGATCTATCTATGG 59.990 44.000 8.57 8.57 39.18 2.74
6522 7070 5.241728 CGTGTCACCAAGATCTATCTATGGA 59.758 44.000 15.80 0.00 37.92 3.41
6523 7071 6.569418 CGTGTCACCAAGATCTATCTATGGAG 60.569 46.154 15.80 8.98 37.92 3.86
6524 7072 6.491745 GTGTCACCAAGATCTATCTATGGAGA 59.508 42.308 15.80 10.97 37.92 3.71
6525 7073 6.718912 TGTCACCAAGATCTATCTATGGAGAG 59.281 42.308 15.80 6.64 36.48 3.20
6526 7074 6.945435 GTCACCAAGATCTATCTATGGAGAGA 59.055 42.308 15.80 5.84 42.87 3.10
6527 7075 6.945435 TCACCAAGATCTATCTATGGAGAGAC 59.055 42.308 15.80 1.08 41.74 3.36
6528 7076 6.947733 CACCAAGATCTATCTATGGAGAGACT 59.052 42.308 15.80 3.27 41.74 3.24
6529 7077 8.106462 CACCAAGATCTATCTATGGAGAGACTA 58.894 40.741 15.80 0.00 41.74 2.59
6530 7078 8.328758 ACCAAGATCTATCTATGGAGAGACTAG 58.671 40.741 15.80 4.41 41.74 2.57
6531 7079 7.283127 CCAAGATCTATCTATGGAGAGACTAGC 59.717 44.444 5.47 0.00 41.74 3.42
6532 7080 7.509236 AGATCTATCTATGGAGAGACTAGCA 57.491 40.000 5.47 0.00 41.74 3.49
6533 7081 7.927788 AGATCTATCTATGGAGAGACTAGCAA 58.072 38.462 5.47 0.00 41.74 3.91
6534 7082 7.829211 AGATCTATCTATGGAGAGACTAGCAAC 59.171 40.741 5.47 0.00 41.74 4.17
6535 7083 5.935206 TCTATCTATGGAGAGACTAGCAACG 59.065 44.000 0.00 0.00 35.23 4.10
6536 7084 4.152284 TCTATGGAGAGACTAGCAACGA 57.848 45.455 0.00 0.00 0.00 3.85
6537 7085 4.130857 TCTATGGAGAGACTAGCAACGAG 58.869 47.826 0.00 0.00 0.00 4.18
6538 7086 1.464734 TGGAGAGACTAGCAACGAGG 58.535 55.000 0.00 0.00 0.00 4.63
6539 7087 0.741915 GGAGAGACTAGCAACGAGGG 59.258 60.000 0.00 0.00 0.00 4.30
6540 7088 0.741915 GAGAGACTAGCAACGAGGGG 59.258 60.000 0.00 0.00 0.00 4.79
6541 7089 0.331954 AGAGACTAGCAACGAGGGGA 59.668 55.000 0.00 0.00 0.00 4.81
6542 7090 1.183549 GAGACTAGCAACGAGGGGAA 58.816 55.000 0.00 0.00 0.00 3.97
6543 7091 1.135333 GAGACTAGCAACGAGGGGAAG 59.865 57.143 0.00 0.00 0.00 3.46
6544 7092 0.175989 GACTAGCAACGAGGGGAAGG 59.824 60.000 0.00 0.00 0.00 3.46
6545 7093 0.252103 ACTAGCAACGAGGGGAAGGA 60.252 55.000 0.00 0.00 0.00 3.36
6546 7094 0.461961 CTAGCAACGAGGGGAAGGAG 59.538 60.000 0.00 0.00 0.00 3.69
6547 7095 0.040646 TAGCAACGAGGGGAAGGAGA 59.959 55.000 0.00 0.00 0.00 3.71
6548 7096 1.219393 GCAACGAGGGGAAGGAGAG 59.781 63.158 0.00 0.00 0.00 3.20
6549 7097 1.545706 GCAACGAGGGGAAGGAGAGT 61.546 60.000 0.00 0.00 0.00 3.24
6550 7098 0.247736 CAACGAGGGGAAGGAGAGTG 59.752 60.000 0.00 0.00 0.00 3.51
6551 7099 1.545706 AACGAGGGGAAGGAGAGTGC 61.546 60.000 0.00 0.00 0.00 4.40
6552 7100 1.984570 CGAGGGGAAGGAGAGTGCA 60.985 63.158 0.00 0.00 0.00 4.57
6553 7101 1.333636 CGAGGGGAAGGAGAGTGCAT 61.334 60.000 0.00 0.00 0.00 3.96
6554 7102 0.467804 GAGGGGAAGGAGAGTGCATC 59.532 60.000 0.00 0.00 0.00 3.91
6555 7103 0.043940 AGGGGAAGGAGAGTGCATCT 59.956 55.000 0.00 0.00 42.61 2.90
6556 7104 1.292242 AGGGGAAGGAGAGTGCATCTA 59.708 52.381 0.00 0.00 38.84 1.98
6557 7105 1.414550 GGGGAAGGAGAGTGCATCTAC 59.585 57.143 0.00 0.00 38.84 2.59
6558 7106 2.111384 GGGAAGGAGAGTGCATCTACA 58.889 52.381 9.98 0.00 42.01 2.74
6559 7107 2.703007 GGGAAGGAGAGTGCATCTACAT 59.297 50.000 9.98 0.00 42.01 2.29
6560 7108 3.898123 GGGAAGGAGAGTGCATCTACATA 59.102 47.826 9.98 0.00 42.01 2.29
6561 7109 4.262249 GGGAAGGAGAGTGCATCTACATAC 60.262 50.000 9.98 0.82 42.01 2.39
6562 7110 4.262249 GGAAGGAGAGTGCATCTACATACC 60.262 50.000 9.98 6.83 42.01 2.73
6563 7111 3.235200 AGGAGAGTGCATCTACATACCC 58.765 50.000 9.98 2.71 42.01 3.69
6564 7112 3.116939 AGGAGAGTGCATCTACATACCCT 60.117 47.826 9.98 4.47 42.01 4.34
6565 7113 3.643792 GGAGAGTGCATCTACATACCCTT 59.356 47.826 0.00 0.00 38.94 3.95
6566 7114 4.502259 GGAGAGTGCATCTACATACCCTTG 60.502 50.000 0.00 0.00 38.94 3.61
6567 7115 4.033709 AGAGTGCATCTACATACCCTTGT 58.966 43.478 0.00 0.00 36.10 3.16
6568 7116 5.208890 AGAGTGCATCTACATACCCTTGTA 58.791 41.667 0.00 0.00 36.10 2.41
6569 7117 5.303078 AGAGTGCATCTACATACCCTTGTAG 59.697 44.000 5.47 5.47 46.85 2.74
6578 7126 5.455056 ACATACCCTTGTAGATCGCTAAG 57.545 43.478 0.00 0.00 0.00 2.18
6579 7127 2.892784 ACCCTTGTAGATCGCTAAGC 57.107 50.000 0.00 0.00 0.00 3.09
6605 7153 1.670791 GTTCAAGTGAACGGGGTTGA 58.329 50.000 8.34 0.00 43.97 3.18
6606 7154 2.227194 GTTCAAGTGAACGGGGTTGAT 58.773 47.619 8.34 0.00 43.97 2.57
6607 7155 1.890876 TCAAGTGAACGGGGTTGATG 58.109 50.000 0.00 0.00 0.00 3.07
6608 7156 0.881118 CAAGTGAACGGGGTTGATGG 59.119 55.000 0.00 0.00 0.00 3.51
6609 7157 0.768622 AAGTGAACGGGGTTGATGGA 59.231 50.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.174037 TCTTTAGGGTAAGGGTGAACATG 57.826 43.478 0.00 0.00 0.00 3.21
42 43 0.747852 TGTACACTGAGCCAACGTCA 59.252 50.000 0.00 0.00 0.00 4.35
46 47 2.943033 AGTTTGTGTACACTGAGCCAAC 59.057 45.455 25.60 16.74 0.00 3.77
96 97 7.816300 TCTTCTAGATGGCTACTATCCTCTA 57.184 40.000 5.84 0.00 0.00 2.43
148 149 3.181450 CCCTCGCCTTTCTCTTTGGATAT 60.181 47.826 0.00 0.00 0.00 1.63
158 159 1.420138 TCTTGAAACCCTCGCCTTTCT 59.580 47.619 0.00 0.00 0.00 2.52
206 207 2.109304 CCTTGGACCTTTAGGGGAAACA 59.891 50.000 0.10 0.00 40.27 2.83
215 216 2.708759 TGGAAGGACCTTGGACCTTTA 58.291 47.619 20.71 12.50 45.08 1.85
216 217 1.529744 TGGAAGGACCTTGGACCTTT 58.470 50.000 20.71 8.21 45.08 3.11
316 317 4.241555 GGCCGCGTGGGATCTGAT 62.242 66.667 18.41 0.00 38.47 2.90
337 338 6.015010 AGTCAGTACTGCTTCTACAGAAACAT 60.015 38.462 18.45 0.00 40.25 2.71
351 352 3.892588 AGAAGCCCTATAGTCAGTACTGC 59.107 47.826 18.45 12.92 36.36 4.40
447 448 1.152226 GGAGGAGGACCCCGATGAT 60.152 63.158 0.00 0.00 36.73 2.45
573 574 0.931468 TGTCTCGGAGGAATAGGGGA 59.069 55.000 4.96 0.00 0.00 4.81
614 626 4.206375 TGAACTCCAGCATGAAAAGTTCA 58.794 39.130 20.25 20.25 45.01 3.18
621 633 1.425066 ACCCTTGAACTCCAGCATGAA 59.575 47.619 0.00 0.00 39.69 2.57
636 648 0.780090 AAATCCACTCCCCCACCCTT 60.780 55.000 0.00 0.00 0.00 3.95
646 658 3.058914 CGGTGTTGTTGAGAAATCCACTC 60.059 47.826 0.00 0.00 35.26 3.51
675 687 2.347731 GGTTTTTCTTCCTCTCGCGAT 58.652 47.619 10.36 0.00 0.00 4.58
803 848 2.225491 CCAAAGGTTCGTATGGTGTGTG 59.775 50.000 0.00 0.00 0.00 3.82
804 849 2.500229 CCAAAGGTTCGTATGGTGTGT 58.500 47.619 0.00 0.00 0.00 3.72
805 850 1.810151 CCCAAAGGTTCGTATGGTGTG 59.190 52.381 0.00 0.00 0.00 3.82
806 851 1.884928 GCCCAAAGGTTCGTATGGTGT 60.885 52.381 0.00 0.00 34.57 4.16
890 936 1.061546 TCCTGGGCTCGTACCTTTTT 58.938 50.000 0.00 0.00 0.00 1.94
891 937 1.003233 CTTCCTGGGCTCGTACCTTTT 59.997 52.381 0.00 0.00 0.00 2.27
892 938 0.613777 CTTCCTGGGCTCGTACCTTT 59.386 55.000 0.00 0.00 0.00 3.11
893 939 1.900545 GCTTCCTGGGCTCGTACCTT 61.901 60.000 0.00 0.00 0.00 3.50
917 963 1.597742 TCTGTCTTCCTTGCTTGTGC 58.402 50.000 0.00 0.00 40.20 4.57
963 1009 8.289618 GCCTTTTTCTTTGTTTCTTTGTTTCTT 58.710 29.630 0.00 0.00 0.00 2.52
965 1011 7.580600 TGCCTTTTTCTTTGTTTCTTTGTTTC 58.419 30.769 0.00 0.00 0.00 2.78
967 1013 7.503521 TTGCCTTTTTCTTTGTTTCTTTGTT 57.496 28.000 0.00 0.00 0.00 2.83
969 1015 6.524239 GCTTTGCCTTTTTCTTTGTTTCTTTG 59.476 34.615 0.00 0.00 0.00 2.77
977 1023 5.111293 TCTCTTGCTTTGCCTTTTTCTTTG 58.889 37.500 0.00 0.00 0.00 2.77
1298 1347 1.394532 TTGAGGAGTAGGGAGGGAGT 58.605 55.000 0.00 0.00 0.00 3.85
1384 1433 0.322546 CACCCCTAGACAAAGGTGCC 60.323 60.000 0.00 0.00 43.02 5.01
1409 1459 4.229876 GGCAGCATAAGAAGAAAACACAC 58.770 43.478 0.00 0.00 0.00 3.82
1506 1556 8.893727 ACACTTCATAAGACCAGTTTTATATGC 58.106 33.333 0.00 0.00 0.00 3.14
1512 1562 8.837389 GTTTCTACACTTCATAAGACCAGTTTT 58.163 33.333 0.00 0.00 0.00 2.43
1513 1563 7.990886 TGTTTCTACACTTCATAAGACCAGTTT 59.009 33.333 0.00 0.00 0.00 2.66
1514 1564 7.506114 TGTTTCTACACTTCATAAGACCAGTT 58.494 34.615 0.00 0.00 0.00 3.16
1515 1565 7.062749 TGTTTCTACACTTCATAAGACCAGT 57.937 36.000 0.00 0.00 0.00 4.00
1516 1566 8.446273 CAATGTTTCTACACTTCATAAGACCAG 58.554 37.037 0.00 0.00 37.03 4.00
1517 1567 7.094805 GCAATGTTTCTACACTTCATAAGACCA 60.095 37.037 0.00 0.00 37.03 4.02
1518 1568 7.119846 AGCAATGTTTCTACACTTCATAAGACC 59.880 37.037 0.00 0.00 37.03 3.85
1519 1569 7.959651 CAGCAATGTTTCTACACTTCATAAGAC 59.040 37.037 0.00 0.00 37.03 3.01
1520 1570 7.361201 GCAGCAATGTTTCTACACTTCATAAGA 60.361 37.037 0.00 0.00 37.03 2.10
1521 1571 6.744537 GCAGCAATGTTTCTACACTTCATAAG 59.255 38.462 0.00 0.00 37.03 1.73
1522 1572 6.206438 TGCAGCAATGTTTCTACACTTCATAA 59.794 34.615 0.00 0.00 37.03 1.90
1523 1573 5.704978 TGCAGCAATGTTTCTACACTTCATA 59.295 36.000 0.00 0.00 37.03 2.15
1524 1574 4.520111 TGCAGCAATGTTTCTACACTTCAT 59.480 37.500 0.00 0.00 37.03 2.57
1525 1575 3.882288 TGCAGCAATGTTTCTACACTTCA 59.118 39.130 0.00 0.00 37.03 3.02
1526 1576 4.488126 TGCAGCAATGTTTCTACACTTC 57.512 40.909 0.00 0.00 37.03 3.01
1527 1577 5.939883 TCTATGCAGCAATGTTTCTACACTT 59.060 36.000 0.00 0.00 37.03 3.16
1528 1578 5.352569 GTCTATGCAGCAATGTTTCTACACT 59.647 40.000 0.00 0.00 37.03 3.55
1529 1579 5.122239 TGTCTATGCAGCAATGTTTCTACAC 59.878 40.000 0.00 0.00 37.03 2.90
1530 1580 5.244755 TGTCTATGCAGCAATGTTTCTACA 58.755 37.500 0.00 0.00 38.95 2.74
1531 1581 5.801350 TGTCTATGCAGCAATGTTTCTAC 57.199 39.130 0.00 0.00 0.00 2.59
1532 1582 8.152898 AGATATGTCTATGCAGCAATGTTTCTA 58.847 33.333 0.00 0.00 31.36 2.10
1533 1583 6.996879 AGATATGTCTATGCAGCAATGTTTCT 59.003 34.615 0.00 0.00 31.36 2.52
1534 1584 7.199541 AGATATGTCTATGCAGCAATGTTTC 57.800 36.000 0.00 0.00 31.36 2.78
1535 1585 7.283807 TGAAGATATGTCTATGCAGCAATGTTT 59.716 33.333 0.00 0.00 33.30 2.83
1536 1586 6.769341 TGAAGATATGTCTATGCAGCAATGTT 59.231 34.615 0.00 0.00 33.30 2.71
1537 1587 6.293698 TGAAGATATGTCTATGCAGCAATGT 58.706 36.000 0.00 0.00 33.30 2.71
1538 1588 6.620949 GCTGAAGATATGTCTATGCAGCAATG 60.621 42.308 24.13 0.00 44.72 2.82
1539 1589 5.411977 GCTGAAGATATGTCTATGCAGCAAT 59.588 40.000 24.13 0.00 44.72 3.56
1540 1590 4.753610 GCTGAAGATATGTCTATGCAGCAA 59.246 41.667 24.13 0.00 44.72 3.91
1541 1591 4.040095 AGCTGAAGATATGTCTATGCAGCA 59.960 41.667 27.51 0.00 46.09 4.41
1542 1592 4.567971 AGCTGAAGATATGTCTATGCAGC 58.432 43.478 22.78 22.78 45.16 5.25
1543 1593 6.366604 CAGAAGCTGAAGATATGTCTATGCAG 59.633 42.308 11.59 11.07 33.30 4.41
1544 1594 6.041296 TCAGAAGCTGAAGATATGTCTATGCA 59.959 38.462 11.59 0.00 37.57 3.96
1570 1660 3.061429 GCGAGCACTTCAACTATCAGAAC 59.939 47.826 0.00 0.00 0.00 3.01
1685 1787 5.916318 TGTCTTCAAATTTTGATGCCAAGT 58.084 33.333 12.39 0.00 39.84 3.16
1688 1790 8.899427 TTTATTGTCTTCAAATTTTGATGCCA 57.101 26.923 12.39 8.38 39.84 4.92
1715 1818 7.349598 ACTGCACTCTTAAAAATATCTGGGAT 58.650 34.615 0.00 0.00 0.00 3.85
1727 1830 7.274686 GCTAAACACAAAAACTGCACTCTTAAA 59.725 33.333 0.00 0.00 0.00 1.52
1961 2068 7.938140 TTTCTATAATCCAACCCAAACTCAG 57.062 36.000 0.00 0.00 0.00 3.35
1962 2069 8.167392 TCTTTTCTATAATCCAACCCAAACTCA 58.833 33.333 0.00 0.00 0.00 3.41
2172 2279 7.736447 AAGGATAGAAACACTCTGAACAAAG 57.264 36.000 0.00 0.00 35.41 2.77
2350 2459 5.123186 CCAAACACAAGGTAATCGCAGATAA 59.877 40.000 0.00 0.00 45.12 1.75
2372 2481 7.035612 GCAGAAGAGAAAAGAAAAAGAAACCA 58.964 34.615 0.00 0.00 0.00 3.67
2373 2482 7.035612 TGCAGAAGAGAAAAGAAAAAGAAACC 58.964 34.615 0.00 0.00 0.00 3.27
2391 2500 4.768583 AGCTTAAAGATCTCCTGCAGAAG 58.231 43.478 17.39 3.66 33.62 2.85
2394 2503 6.541641 ACAAATAGCTTAAAGATCTCCTGCAG 59.458 38.462 6.78 6.78 0.00 4.41
2458 2567 9.590451 AATTTAGAATCATTGGCTACATTTGTG 57.410 29.630 0.00 0.00 0.00 3.33
2508 2617 3.713288 TGTACATCTATTGCGGCACTAC 58.287 45.455 0.05 0.00 0.00 2.73
2739 2848 9.753674 TCAAGACCTAAAGACCAATTGAAATAT 57.246 29.630 7.12 0.00 0.00 1.28
2887 2996 3.264845 GGGGAGTGGGGAGCCAAA 61.265 66.667 0.00 0.00 0.00 3.28
2888 2997 4.285790 AGGGGAGTGGGGAGCCAA 62.286 66.667 0.00 0.00 0.00 4.52
2889 2998 4.741239 GAGGGGAGTGGGGAGCCA 62.741 72.222 0.00 0.00 0.00 4.75
2960 3069 2.613576 GAAGGGAGAGGAGGGAGGGG 62.614 70.000 0.00 0.00 0.00 4.79
2961 3070 1.074850 GAAGGGAGAGGAGGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
2965 3074 1.074850 GGGAGAAGGGAGAGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
2966 3075 0.341609 AAGGGAGAAGGGAGAGGAGG 59.658 60.000 0.00 0.00 0.00 4.30
2967 3076 1.290732 AGAAGGGAGAAGGGAGAGGAG 59.709 57.143 0.00 0.00 0.00 3.69
2968 3077 1.289530 GAGAAGGGAGAAGGGAGAGGA 59.710 57.143 0.00 0.00 0.00 3.71
2969 3078 1.691163 GGAGAAGGGAGAAGGGAGAGG 60.691 61.905 0.00 0.00 0.00 3.69
2971 3080 0.033011 CGGAGAAGGGAGAAGGGAGA 60.033 60.000 0.00 0.00 0.00 3.71
2973 3082 1.001760 CCGGAGAAGGGAGAAGGGA 59.998 63.158 0.00 0.00 0.00 4.20
2977 3086 3.075005 CCGCCGGAGAAGGGAGAA 61.075 66.667 5.05 0.00 0.00 2.87
3119 3283 1.745489 CTACCTTGCTGCCCGGAAC 60.745 63.158 0.73 0.00 0.00 3.62
3120 3284 2.668632 CTACCTTGCTGCCCGGAA 59.331 61.111 0.73 0.00 0.00 4.30
3144 3308 2.341543 CTGTCGCAGCACAGGAGT 59.658 61.111 14.06 0.00 40.26 3.85
3239 3403 2.740055 GAGCACCACCGCTGTCTG 60.740 66.667 0.00 0.00 44.01 3.51
3240 3404 4.008933 GGAGCACCACCGCTGTCT 62.009 66.667 0.00 0.00 44.01 3.41
3242 3406 3.560251 AAGGAGCACCACCGCTGT 61.560 61.111 2.07 0.00 44.01 4.40
3243 3407 3.052082 CAAGGAGCACCACCGCTG 61.052 66.667 2.07 0.00 44.01 5.18
3247 3411 3.971702 AGGCCAAGGAGCACCACC 61.972 66.667 5.01 0.00 38.94 4.61
3248 3412 2.674380 CAGGCCAAGGAGCACCAC 60.674 66.667 5.01 0.00 38.94 4.16
3249 3413 4.666253 GCAGGCCAAGGAGCACCA 62.666 66.667 5.01 0.00 38.94 4.17
3250 3414 4.666253 TGCAGGCCAAGGAGCACC 62.666 66.667 5.01 0.00 31.05 5.01
3262 3426 2.818714 CAGAGAGCCGCTTGCAGG 60.819 66.667 0.00 0.00 44.83 4.85
3263 3427 2.818714 CCAGAGAGCCGCTTGCAG 60.819 66.667 0.00 0.00 44.83 4.41
3264 3428 3.630013 ACCAGAGAGCCGCTTGCA 61.630 61.111 0.00 0.00 44.83 4.08
3265 3429 3.123620 CACCAGAGAGCCGCTTGC 61.124 66.667 0.00 0.00 41.71 4.01
3266 3430 3.123620 GCACCAGAGAGCCGCTTG 61.124 66.667 0.00 0.00 0.00 4.01
3267 3431 4.749310 CGCACCAGAGAGCCGCTT 62.749 66.667 0.00 0.00 0.00 4.68
3370 3535 3.077556 GGAGAAGAGAGGCCGCCA 61.078 66.667 13.15 0.00 0.00 5.69
3373 3538 3.532155 CCGGGAGAAGAGAGGCCG 61.532 72.222 0.00 0.00 0.00 6.13
3463 3628 2.765807 ATCCGGTCTGCCCAGGAG 60.766 66.667 0.00 0.00 38.65 3.69
3464 3629 2.764128 GATCCGGTCTGCCCAGGA 60.764 66.667 0.00 0.00 39.28 3.86
3474 3639 2.765807 CCTGGGCTCAGATCCGGT 60.766 66.667 17.43 0.00 43.49 5.28
3567 3733 4.969196 ACCACCGAGCACTGCACG 62.969 66.667 13.25 13.25 41.79 5.34
3572 3738 3.941188 CCACCACCACCGAGCACT 61.941 66.667 0.00 0.00 0.00 4.40
3594 3766 0.687354 ACAGGACGAAGAGCATGGTT 59.313 50.000 0.00 0.00 0.00 3.67
3799 3972 1.562783 GCACTCCTTCCACTCCTAGT 58.437 55.000 0.00 0.00 0.00 2.57
4141 4629 4.498520 CCCGCAGATGTCGTCGCT 62.499 66.667 7.11 0.00 0.00 4.93
4179 4667 3.718815 GAAGAGAAGAACCACAACGACT 58.281 45.455 0.00 0.00 0.00 4.18
4313 4812 3.260884 ACAGGACGACCAGATTACAACAT 59.739 43.478 6.71 0.00 38.94 2.71
4364 4867 2.032550 CCGAAATGACAAGCCAGCATAG 59.967 50.000 0.00 0.00 0.00 2.23
4369 4872 1.672881 GATCCCGAAATGACAAGCCAG 59.327 52.381 0.00 0.00 0.00 4.85
4374 4877 2.290260 ACAGCAGATCCCGAAATGACAA 60.290 45.455 0.00 0.00 0.00 3.18
4472 4982 2.919228 ACACTCTCGAAACAGGCTTTT 58.081 42.857 0.00 0.00 0.00 2.27
4493 5003 5.601313 ACACCTACTCTGAACTAAAACCAGA 59.399 40.000 0.00 0.00 35.81 3.86
4494 5004 5.855045 ACACCTACTCTGAACTAAAACCAG 58.145 41.667 0.00 0.00 0.00 4.00
4495 5005 5.364446 TGACACCTACTCTGAACTAAAACCA 59.636 40.000 0.00 0.00 0.00 3.67
4496 5006 5.850614 TGACACCTACTCTGAACTAAAACC 58.149 41.667 0.00 0.00 0.00 3.27
4497 5007 6.369065 CCATGACACCTACTCTGAACTAAAAC 59.631 42.308 0.00 0.00 0.00 2.43
4498 5008 6.464222 CCATGACACCTACTCTGAACTAAAA 58.536 40.000 0.00 0.00 0.00 1.52
4499 5009 5.046591 CCCATGACACCTACTCTGAACTAAA 60.047 44.000 0.00 0.00 0.00 1.85
4591 5101 3.118038 ACACCAAACAGGCACTTCTAGAA 60.118 43.478 4.81 4.81 43.14 2.10
4712 5222 5.525378 ACTTTTGATCCTATCGAGTCAATGC 59.475 40.000 0.00 0.00 31.39 3.56
4750 5260 6.507900 ACTCAATCTGGTATCAATGTAGACG 58.492 40.000 0.00 0.00 0.00 4.18
4937 5447 7.333921 GCAAATGTGTGGGAATAAATCATCAAA 59.666 33.333 0.00 0.00 0.00 2.69
4976 5486 1.463214 TTCCTCAAGGGCAGGGACA 60.463 57.895 0.00 0.00 35.41 4.02
5449 5968 3.505680 GTGGCCATAAGAAATGTCACACA 59.494 43.478 9.72 0.00 0.00 3.72
5512 6031 4.083110 AGAGCCAATCGTTTCATTTCACAG 60.083 41.667 0.00 0.00 0.00 3.66
5738 6258 3.562182 CCTAGGTCTTGTGGGTTTTTGT 58.438 45.455 0.00 0.00 0.00 2.83
5859 6379 2.446435 GCCTCAAGTGCCCAATAAGAA 58.554 47.619 0.00 0.00 0.00 2.52
5921 6441 6.139679 AGACAGGATTTTCAATACCTTCCA 57.860 37.500 0.00 0.00 0.00 3.53
5975 6496 2.607631 AAAGCAGCAACAACAGCAAT 57.392 40.000 0.00 0.00 0.00 3.56
5976 6497 2.383368 AAAAGCAGCAACAACAGCAA 57.617 40.000 0.00 0.00 0.00 3.91
5977 6498 2.426738 AGTAAAAGCAGCAACAACAGCA 59.573 40.909 0.00 0.00 0.00 4.41
5978 6499 2.791004 CAGTAAAAGCAGCAACAACAGC 59.209 45.455 0.00 0.00 0.00 4.40
5979 6500 2.791004 GCAGTAAAAGCAGCAACAACAG 59.209 45.455 0.00 0.00 0.00 3.16
5980 6501 2.165234 TGCAGTAAAAGCAGCAACAACA 59.835 40.909 0.00 0.00 37.02 3.33
5981 6502 2.808244 TGCAGTAAAAGCAGCAACAAC 58.192 42.857 0.00 0.00 37.02 3.32
5982 6503 3.516981 TTGCAGTAAAAGCAGCAACAA 57.483 38.095 0.00 0.00 43.75 2.83
5998 6519 5.450818 AGGGGACAGACTTATAATTTGCA 57.549 39.130 0.00 0.00 0.00 4.08
6058 6602 5.560724 CTTCAGGGAGAACATGGTAAGAAA 58.439 41.667 0.00 0.00 31.61 2.52
6066 6610 1.363744 GACGCTTCAGGGAGAACATG 58.636 55.000 0.00 0.00 31.61 3.21
6070 6614 0.541998 TCTGGACGCTTCAGGGAGAA 60.542 55.000 0.00 0.00 33.36 2.87
6194 6738 0.721718 CGGCCTCTTCAAACTTAGCG 59.278 55.000 0.00 0.00 0.00 4.26
6259 6803 5.839262 TCACGTCACAAGATTATCAACAC 57.161 39.130 0.00 0.00 0.00 3.32
6290 6834 7.756395 AATAACATCATCTAAAGGCAGGATG 57.244 36.000 0.00 0.00 38.40 3.51
6319 6863 1.550327 TGCAGACAGAGGATTCTCGT 58.450 50.000 0.00 0.00 44.47 4.18
6333 6877 4.097135 GCTACTCTGTTCTAGTCATGCAGA 59.903 45.833 0.00 0.00 35.29 4.26
6334 6878 4.097741 AGCTACTCTGTTCTAGTCATGCAG 59.902 45.833 0.00 0.00 0.00 4.41
6335 6879 4.019858 AGCTACTCTGTTCTAGTCATGCA 58.980 43.478 0.00 0.00 0.00 3.96
6336 6880 4.097135 TGAGCTACTCTGTTCTAGTCATGC 59.903 45.833 0.00 0.00 0.00 4.06
6349 6893 3.384168 TCTCTCTCCTCTGAGCTACTCT 58.616 50.000 0.00 0.00 38.58 3.24
6358 6902 1.473677 CTGTGTGCTCTCTCTCCTCTG 59.526 57.143 0.00 0.00 0.00 3.35
6360 6904 0.173255 GCTGTGTGCTCTCTCTCCTC 59.827 60.000 0.00 0.00 38.95 3.71
6362 6906 1.217779 GGCTGTGTGCTCTCTCTCC 59.782 63.158 0.00 0.00 42.39 3.71
6371 6915 0.038892 CAATCAACTGGGCTGTGTGC 60.039 55.000 0.00 0.00 41.94 4.57
6386 6930 0.106669 GACCCTAACTGCCCCCAATC 60.107 60.000 0.00 0.00 0.00 2.67
6431 6976 4.350816 CCATTCCAATACCTACCTCCATGA 59.649 45.833 0.00 0.00 0.00 3.07
6462 7010 0.759959 TTCTGCTACGTTCCCCAACA 59.240 50.000 0.00 0.00 32.14 3.33
6463 7011 1.886886 TTTCTGCTACGTTCCCCAAC 58.113 50.000 0.00 0.00 0.00 3.77
6464 7012 2.871096 ATTTCTGCTACGTTCCCCAA 57.129 45.000 0.00 0.00 0.00 4.12
6465 7013 2.039216 TGAATTTCTGCTACGTTCCCCA 59.961 45.455 0.00 0.00 0.00 4.96
6466 7014 2.706890 TGAATTTCTGCTACGTTCCCC 58.293 47.619 0.00 0.00 0.00 4.81
6467 7015 4.759516 TTTGAATTTCTGCTACGTTCCC 57.240 40.909 0.00 0.00 0.00 3.97
6468 7016 7.637709 AAATTTTGAATTTCTGCTACGTTCC 57.362 32.000 0.00 0.00 0.00 3.62
6469 7017 8.214472 GGAAAATTTTGAATTTCTGCTACGTTC 58.786 33.333 8.47 0.00 36.15 3.95
6470 7018 7.926018 AGGAAAATTTTGAATTTCTGCTACGTT 59.074 29.630 8.47 0.00 36.15 3.99
6471 7019 7.433680 AGGAAAATTTTGAATTTCTGCTACGT 58.566 30.769 8.47 0.00 36.15 3.57
6472 7020 7.873739 AGGAAAATTTTGAATTTCTGCTACG 57.126 32.000 8.47 0.00 36.15 3.51
6473 7021 8.850452 CGTAGGAAAATTTTGAATTTCTGCTAC 58.150 33.333 8.47 6.07 36.15 3.58
6474 7022 8.573035 ACGTAGGAAAATTTTGAATTTCTGCTA 58.427 29.630 8.47 0.00 36.15 3.49
6475 7023 7.382218 CACGTAGGAAAATTTTGAATTTCTGCT 59.618 33.333 8.47 0.00 36.15 4.24
6476 7024 7.169140 ACACGTAGGAAAATTTTGAATTTCTGC 59.831 33.333 8.47 0.00 36.15 4.26
6477 7025 8.574196 ACACGTAGGAAAATTTTGAATTTCTG 57.426 30.769 8.47 0.00 36.15 3.02
6478 7026 8.410141 TGACACGTAGGAAAATTTTGAATTTCT 58.590 29.630 8.47 0.00 36.15 2.52
6479 7027 8.476925 GTGACACGTAGGAAAATTTTGAATTTC 58.523 33.333 8.47 0.00 35.33 2.17
6480 7028 7.436970 GGTGACACGTAGGAAAATTTTGAATTT 59.563 33.333 8.47 0.00 0.00 1.82
6481 7029 6.921307 GGTGACACGTAGGAAAATTTTGAATT 59.079 34.615 8.47 0.00 0.00 2.17
6482 7030 6.039941 TGGTGACACGTAGGAAAATTTTGAAT 59.960 34.615 8.47 0.00 33.40 2.57
6483 7031 5.357314 TGGTGACACGTAGGAAAATTTTGAA 59.643 36.000 8.47 0.00 33.40 2.69
6484 7032 4.882427 TGGTGACACGTAGGAAAATTTTGA 59.118 37.500 8.47 0.00 33.40 2.69
6485 7033 5.176407 TGGTGACACGTAGGAAAATTTTG 57.824 39.130 8.47 0.00 33.40 2.44
6486 7034 5.591067 TCTTGGTGACACGTAGGAAAATTTT 59.409 36.000 2.28 2.28 42.67 1.82
6487 7035 5.127491 TCTTGGTGACACGTAGGAAAATTT 58.873 37.500 0.00 0.00 42.67 1.82
6488 7036 4.710324 TCTTGGTGACACGTAGGAAAATT 58.290 39.130 0.00 0.00 42.67 1.82
6489 7037 4.345859 TCTTGGTGACACGTAGGAAAAT 57.654 40.909 0.00 0.00 42.67 1.82
6490 7038 3.823281 TCTTGGTGACACGTAGGAAAA 57.177 42.857 0.00 0.00 42.67 2.29
6491 7039 3.576982 AGATCTTGGTGACACGTAGGAAA 59.423 43.478 0.00 0.00 42.67 3.13
6492 7040 3.162666 AGATCTTGGTGACACGTAGGAA 58.837 45.455 0.00 0.00 42.67 3.36
6493 7041 2.803956 AGATCTTGGTGACACGTAGGA 58.196 47.619 0.00 0.00 42.67 2.94
6494 7042 4.580995 AGATAGATCTTGGTGACACGTAGG 59.419 45.833 0.00 0.00 42.67 3.18
6495 7043 5.759506 AGATAGATCTTGGTGACACGTAG 57.240 43.478 0.00 0.00 42.67 3.51
6496 7044 6.206829 CCATAGATAGATCTTGGTGACACGTA 59.793 42.308 0.00 0.00 42.67 3.57
6497 7045 5.010112 CCATAGATAGATCTTGGTGACACGT 59.990 44.000 0.00 0.00 42.67 4.49
6498 7046 5.241728 TCCATAGATAGATCTTGGTGACACG 59.758 44.000 0.00 0.00 42.67 4.49
6499 7047 6.491745 TCTCCATAGATAGATCTTGGTGACAC 59.508 42.308 0.00 0.00 42.67 3.67
6500 7048 6.614657 TCTCCATAGATAGATCTTGGTGACA 58.385 40.000 0.00 0.00 38.32 3.58
6501 7049 6.945435 TCTCTCCATAGATAGATCTTGGTGAC 59.055 42.308 0.00 0.00 38.32 3.67
6502 7050 6.945435 GTCTCTCCATAGATAGATCTTGGTGA 59.055 42.308 0.00 7.70 38.32 4.02
6503 7051 6.947733 AGTCTCTCCATAGATAGATCTTGGTG 59.052 42.308 0.00 3.27 38.32 4.17
6504 7052 7.102518 AGTCTCTCCATAGATAGATCTTGGT 57.897 40.000 0.00 0.00 38.32 3.67
6505 7053 7.283127 GCTAGTCTCTCCATAGATAGATCTTGG 59.717 44.444 0.00 1.69 38.32 3.61
6506 7054 7.828717 TGCTAGTCTCTCCATAGATAGATCTTG 59.171 40.741 0.00 0.00 38.32 3.02
6507 7055 7.927788 TGCTAGTCTCTCCATAGATAGATCTT 58.072 38.462 0.00 0.00 38.32 2.40
6508 7056 7.509236 TGCTAGTCTCTCCATAGATAGATCT 57.491 40.000 0.00 0.00 40.86 2.75
6509 7057 7.201609 CGTTGCTAGTCTCTCCATAGATAGATC 60.202 44.444 0.00 0.00 28.96 2.75
6510 7058 6.597672 CGTTGCTAGTCTCTCCATAGATAGAT 59.402 42.308 0.00 0.00 28.96 1.98
6511 7059 5.935206 CGTTGCTAGTCTCTCCATAGATAGA 59.065 44.000 0.00 0.00 0.00 1.98
6512 7060 5.935206 TCGTTGCTAGTCTCTCCATAGATAG 59.065 44.000 0.00 0.00 0.00 2.08
6513 7061 5.866207 TCGTTGCTAGTCTCTCCATAGATA 58.134 41.667 0.00 0.00 0.00 1.98
6514 7062 4.720046 TCGTTGCTAGTCTCTCCATAGAT 58.280 43.478 0.00 0.00 0.00 1.98
6515 7063 4.130857 CTCGTTGCTAGTCTCTCCATAGA 58.869 47.826 0.00 0.00 0.00 1.98
6516 7064 3.252215 CCTCGTTGCTAGTCTCTCCATAG 59.748 52.174 0.00 0.00 0.00 2.23
6517 7065 3.215151 CCTCGTTGCTAGTCTCTCCATA 58.785 50.000 0.00 0.00 0.00 2.74
6518 7066 2.028130 CCTCGTTGCTAGTCTCTCCAT 58.972 52.381 0.00 0.00 0.00 3.41
6519 7067 1.464734 CCTCGTTGCTAGTCTCTCCA 58.535 55.000 0.00 0.00 0.00 3.86
6520 7068 0.741915 CCCTCGTTGCTAGTCTCTCC 59.258 60.000 0.00 0.00 0.00 3.71
6521 7069 0.741915 CCCCTCGTTGCTAGTCTCTC 59.258 60.000 0.00 0.00 0.00 3.20
6522 7070 0.331954 TCCCCTCGTTGCTAGTCTCT 59.668 55.000 0.00 0.00 0.00 3.10
6523 7071 1.135333 CTTCCCCTCGTTGCTAGTCTC 59.865 57.143 0.00 0.00 0.00 3.36
6524 7072 1.187087 CTTCCCCTCGTTGCTAGTCT 58.813 55.000 0.00 0.00 0.00 3.24
6525 7073 0.175989 CCTTCCCCTCGTTGCTAGTC 59.824 60.000 0.00 0.00 0.00 2.59
6526 7074 0.252103 TCCTTCCCCTCGTTGCTAGT 60.252 55.000 0.00 0.00 0.00 2.57
6527 7075 0.461961 CTCCTTCCCCTCGTTGCTAG 59.538 60.000 0.00 0.00 0.00 3.42
6528 7076 0.040646 TCTCCTTCCCCTCGTTGCTA 59.959 55.000 0.00 0.00 0.00 3.49
6529 7077 1.229209 TCTCCTTCCCCTCGTTGCT 60.229 57.895 0.00 0.00 0.00 3.91
6530 7078 1.219393 CTCTCCTTCCCCTCGTTGC 59.781 63.158 0.00 0.00 0.00 4.17
6531 7079 0.247736 CACTCTCCTTCCCCTCGTTG 59.752 60.000 0.00 0.00 0.00 4.10
6532 7080 1.545706 GCACTCTCCTTCCCCTCGTT 61.546 60.000 0.00 0.00 0.00 3.85
6533 7081 1.985116 GCACTCTCCTTCCCCTCGT 60.985 63.158 0.00 0.00 0.00 4.18
6534 7082 1.333636 ATGCACTCTCCTTCCCCTCG 61.334 60.000 0.00 0.00 0.00 4.63
6535 7083 0.467804 GATGCACTCTCCTTCCCCTC 59.532 60.000 0.00 0.00 0.00 4.30
6536 7084 0.043940 AGATGCACTCTCCTTCCCCT 59.956 55.000 0.00 0.00 0.00 4.79
6537 7085 1.414550 GTAGATGCACTCTCCTTCCCC 59.585 57.143 0.00 0.00 35.28 4.81
6538 7086 2.111384 TGTAGATGCACTCTCCTTCCC 58.889 52.381 0.00 0.00 35.28 3.97
6539 7087 4.262249 GGTATGTAGATGCACTCTCCTTCC 60.262 50.000 0.00 0.00 35.28 3.46
6540 7088 4.262249 GGGTATGTAGATGCACTCTCCTTC 60.262 50.000 0.00 0.00 35.28 3.46
6541 7089 3.643792 GGGTATGTAGATGCACTCTCCTT 59.356 47.826 0.00 0.00 35.28 3.36
6542 7090 3.116939 AGGGTATGTAGATGCACTCTCCT 60.117 47.826 0.00 0.00 35.28 3.69
6543 7091 3.235200 AGGGTATGTAGATGCACTCTCC 58.765 50.000 0.00 0.00 35.28 3.71
6544 7092 4.100189 ACAAGGGTATGTAGATGCACTCTC 59.900 45.833 0.00 0.00 35.28 3.20
6545 7093 4.033709 ACAAGGGTATGTAGATGCACTCT 58.966 43.478 0.00 0.00 38.06 3.24
6546 7094 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
6555 7103 5.048224 GCTTAGCGATCTACAAGGGTATGTA 60.048 44.000 0.00 0.00 34.75 2.29
6556 7104 4.262079 GCTTAGCGATCTACAAGGGTATGT 60.262 45.833 0.00 0.00 37.32 2.29
6557 7105 4.238514 GCTTAGCGATCTACAAGGGTATG 58.761 47.826 0.00 0.00 0.00 2.39
6558 7106 4.522722 GCTTAGCGATCTACAAGGGTAT 57.477 45.455 0.00 0.00 0.00 2.73
6560 7108 2.892784 GCTTAGCGATCTACAAGGGT 57.107 50.000 0.00 0.00 0.00 4.34
6573 7121 0.095417 CTTGAACGCTTCCGCTTAGC 59.905 55.000 0.00 0.00 38.22 3.09
6574 7122 1.126846 CACTTGAACGCTTCCGCTTAG 59.873 52.381 0.00 0.00 38.22 2.18
6575 7123 1.144969 CACTTGAACGCTTCCGCTTA 58.855 50.000 0.00 0.00 38.22 3.09
6576 7124 0.531974 TCACTTGAACGCTTCCGCTT 60.532 50.000 0.00 0.00 38.22 4.68
6577 7125 0.531974 TTCACTTGAACGCTTCCGCT 60.532 50.000 0.00 0.00 38.22 5.52
6578 7126 0.384353 GTTCACTTGAACGCTTCCGC 60.384 55.000 6.36 0.00 43.97 5.54
6579 7127 3.729004 GTTCACTTGAACGCTTCCG 57.271 52.632 6.36 0.00 43.97 4.30
6587 7135 2.226330 CATCAACCCCGTTCACTTGAA 58.774 47.619 0.00 0.00 0.00 2.69
6588 7136 1.544537 CCATCAACCCCGTTCACTTGA 60.545 52.381 0.00 0.00 0.00 3.02
6589 7137 0.881118 CCATCAACCCCGTTCACTTG 59.119 55.000 0.00 0.00 0.00 3.16
6590 7138 0.768622 TCCATCAACCCCGTTCACTT 59.231 50.000 0.00 0.00 0.00 3.16
6591 7139 2.458892 TCCATCAACCCCGTTCACT 58.541 52.632 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.