Multiple sequence alignment - TraesCS3B01G295400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G295400 chr3B 100.000 2852 0 0 1 2852 474001444 474004295 0.000000e+00 5267
1 TraesCS3B01G295400 chr3B 87.162 1036 77 22 733 1764 473709568 473708585 0.000000e+00 1125
2 TraesCS3B01G295400 chr3B 90.273 843 50 9 682 1520 473711270 473710456 0.000000e+00 1074
3 TraesCS3B01G295400 chr3B 89.051 137 12 3 2709 2844 738129240 738129106 1.760000e-37 167
4 TraesCS3B01G295400 chr3A 84.286 2100 208 49 664 2689 484989814 484991865 0.000000e+00 1938
5 TraesCS3B01G295400 chr3A 90.267 935 69 4 837 1765 484654736 484653818 0.000000e+00 1203
6 TraesCS3B01G295400 chr3D 92.711 1125 76 4 645 1765 363609299 363608177 0.000000e+00 1618
7 TraesCS3B01G295400 chr3D 88.582 797 55 14 984 1764 363811370 363812146 0.000000e+00 935
8 TraesCS3B01G295400 chr3D 84.440 527 61 14 2 510 363610043 363609520 1.530000e-137 499
9 TraesCS3B01G295400 chr2B 80.147 408 58 17 239 628 775835391 775835793 1.670000e-72 283
10 TraesCS3B01G295400 chr2B 91.339 127 10 1 2722 2847 733870267 733870393 3.780000e-39 172
11 TraesCS3B01G295400 chr2B 87.970 133 14 2 2717 2847 709046531 709046399 3.800000e-34 156
12 TraesCS3B01G295400 chr6A 79.187 418 63 19 251 648 32663701 32663288 4.680000e-68 268
13 TraesCS3B01G295400 chr6A 82.072 251 38 7 1 245 617062229 617061980 1.040000e-49 207
14 TraesCS3B01G295400 chr1D 77.904 439 72 20 240 660 408539739 408539308 1.700000e-62 250
15 TraesCS3B01G295400 chr1D 87.023 131 16 1 2718 2847 409576125 409575995 2.290000e-31 147
16 TraesCS3B01G295400 chr2A 78.086 397 71 14 273 657 7842045 7842437 1.320000e-58 237
17 TraesCS3B01G295400 chr2D 79.480 346 53 12 287 628 632462278 632462609 2.210000e-56 230
18 TraesCS3B01G295400 chr2D 83.673 245 32 8 7 245 558730152 558730394 1.030000e-54 224
19 TraesCS3B01G295400 chr2D 82.591 247 31 10 3 243 472480629 472480389 1.040000e-49 207
20 TraesCS3B01G295400 chr7B 78.125 384 63 19 10 382 504772170 504772543 1.030000e-54 224
21 TraesCS3B01G295400 chr1A 83.806 247 28 11 8 245 290366500 290366743 1.030000e-54 224
22 TraesCS3B01G295400 chr1A 78.682 258 42 11 412 659 293739727 293739473 2.940000e-35 159
23 TraesCS3B01G295400 chr5A 76.667 450 69 22 239 667 537132693 537132259 1.720000e-52 217
24 TraesCS3B01G295400 chr7A 77.206 408 67 19 252 643 15710882 15711279 6.190000e-52 215
25 TraesCS3B01G295400 chr6D 82.661 248 37 6 2 245 462278232 462278477 6.190000e-52 215
26 TraesCS3B01G295400 chr6B 83.128 243 29 12 8 245 683549108 683549343 8.010000e-51 211
27 TraesCS3B01G295400 chr5D 80.345 290 43 13 4 285 8628957 8629240 1.040000e-49 207
28 TraesCS3B01G295400 chr5D 75.917 436 69 23 252 657 495139680 495140109 1.040000e-44 191
29 TraesCS3B01G295400 chr4D 76.430 437 65 27 245 657 74153222 74153644 4.820000e-48 202
30 TraesCS3B01G295400 chr1B 78.694 291 46 11 248 524 41853318 41853030 2.260000e-41 180
31 TraesCS3B01G295400 chr5B 91.406 128 10 1 2721 2847 80270812 80270939 1.050000e-39 174
32 TraesCS3B01G295400 chr5B 90.625 128 11 1 2721 2847 80675601 80675728 4.890000e-38 169
33 TraesCS3B01G295400 chr5B 87.597 129 15 1 2720 2847 493924799 493924927 6.370000e-32 148
34 TraesCS3B01G295400 chr5B 87.234 94 9 3 289 382 395611418 395611508 1.400000e-18 104
35 TraesCS3B01G295400 chr4B 92.857 112 7 1 2720 2831 40872548 40872438 8.180000e-36 161
36 TraesCS3B01G295400 chr4A 88.710 124 14 0 2721 2844 673076958 673077081 4.920000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G295400 chr3B 474001444 474004295 2851 False 5267.0 5267 100.0000 1 2852 1 chr3B.!!$F1 2851
1 TraesCS3B01G295400 chr3B 473708585 473711270 2685 True 1099.5 1125 88.7175 682 1764 2 chr3B.!!$R2 1082
2 TraesCS3B01G295400 chr3A 484989814 484991865 2051 False 1938.0 1938 84.2860 664 2689 1 chr3A.!!$F1 2025
3 TraesCS3B01G295400 chr3A 484653818 484654736 918 True 1203.0 1203 90.2670 837 1765 1 chr3A.!!$R1 928
4 TraesCS3B01G295400 chr3D 363608177 363610043 1866 True 1058.5 1618 88.5755 2 1765 2 chr3D.!!$R1 1763
5 TraesCS3B01G295400 chr3D 363811370 363812146 776 False 935.0 935 88.5820 984 1764 1 chr3D.!!$F1 780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
801 943 0.028902 GTCCGCAATGAATAACGGGC 59.971 55.0 0.0 0.0 45.65 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1993 3799 0.040958 GCAGTGAGCCACAAAGAACG 60.041 55.0 0.0 0.0 36.74 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 78 9.771915 AATGTTTGTGAATTCAAAAATGTTCAC 57.228 25.926 23.34 12.74 46.47 3.18
255 260 5.766150 ATGGAAAAATATTCGCCGATTCA 57.234 34.783 0.00 0.00 0.00 2.57
285 290 9.672086 AATGATCTTGCATTTCAAAAATGTTTG 57.328 25.926 12.53 1.55 37.30 2.93
287 292 8.675504 TGATCTTGCATTTCAAAAATGTTTGTT 58.324 25.926 8.22 0.00 43.90 2.83
372 380 6.003234 TCTAAAAATGTTCGCCGATTCAAA 57.997 33.333 0.00 0.00 0.00 2.69
500 518 9.786105 AAATGGTCACAAATTTGAAAAATGTTC 57.214 25.926 24.64 9.27 0.00 3.18
501 519 7.912056 TGGTCACAAATTTGAAAAATGTTCA 57.088 28.000 24.64 10.96 0.00 3.18
502 520 7.746929 TGGTCACAAATTTGAAAAATGTTCAC 58.253 30.769 24.64 6.39 0.00 3.18
503 521 6.899243 GGTCACAAATTTGAAAAATGTTCACG 59.101 34.615 24.64 0.00 0.00 4.35
504 522 7.201478 GGTCACAAATTTGAAAAATGTTCACGA 60.201 33.333 24.64 0.00 0.00 4.35
505 523 8.327429 GTCACAAATTTGAAAAATGTTCACGAT 58.673 29.630 24.64 0.00 0.00 3.73
506 524 8.877779 TCACAAATTTGAAAAATGTTCACGATT 58.122 25.926 24.64 0.00 0.00 3.34
507 525 9.488124 CACAAATTTGAAAAATGTTCACGATTT 57.512 25.926 24.64 0.00 30.82 2.17
508 526 9.701355 ACAAATTTGAAAAATGTTCACGATTTC 57.299 25.926 24.64 0.00 29.50 2.17
509 527 9.699985 CAAATTTGAAAAATGTTCACGATTTCA 57.300 25.926 13.08 0.00 38.00 2.69
513 531 9.699985 TTTGAAAAATGTTCACGATTTCAAATG 57.300 25.926 16.36 0.00 46.57 2.32
514 532 8.417780 TGAAAAATGTTCACGATTTCAAATGT 57.582 26.923 0.00 0.00 37.14 2.71
515 533 8.326713 TGAAAAATGTTCACGATTTCAAATGTG 58.673 29.630 0.00 0.00 37.14 3.21
516 534 7.769272 AAAATGTTCACGATTTCAAATGTGT 57.231 28.000 10.57 0.00 34.08 3.72
517 535 6.752335 AATGTTCACGATTTCAAATGTGTG 57.248 33.333 10.57 8.44 34.08 3.82
518 536 4.041049 TGTTCACGATTTCAAATGTGTGC 58.959 39.130 7.07 5.44 34.08 4.57
519 537 3.978718 TCACGATTTCAAATGTGTGCA 57.021 38.095 7.07 0.00 34.08 4.57
520 538 4.502171 TCACGATTTCAAATGTGTGCAT 57.498 36.364 7.07 0.00 36.80 3.96
521 539 4.228317 TCACGATTTCAAATGTGTGCATG 58.772 39.130 7.07 0.00 35.15 4.06
522 540 4.023365 TCACGATTTCAAATGTGTGCATGA 60.023 37.500 0.00 0.00 35.15 3.07
523 541 4.322539 CACGATTTCAAATGTGTGCATGAG 59.677 41.667 0.00 0.00 35.15 2.90
524 542 3.302434 CGATTTCAAATGTGTGCATGAGC 59.698 43.478 0.00 0.00 42.57 4.26
525 543 2.728690 TTCAAATGTGTGCATGAGCC 57.271 45.000 0.00 0.00 41.13 4.70
570 588 7.040201 TCACGAAATTAAGAGTGGTAGTGTACT 60.040 37.037 0.00 0.00 35.50 2.73
589 607 4.100707 ACTCCGATGATGCAACAAAATG 57.899 40.909 0.00 0.00 0.00 2.32
604 622 6.870965 GCAACAAAATGTGGTCATGGTTATTA 59.129 34.615 0.00 0.00 34.19 0.98
607 625 9.487790 AACAAAATGTGGTCATGGTTATTAAAG 57.512 29.630 0.00 0.00 34.19 1.85
638 656 2.673976 TTTTTCTTCCGTTACAGCGC 57.326 45.000 0.00 0.00 0.00 5.92
639 657 1.584175 TTTTCTTCCGTTACAGCGCA 58.416 45.000 11.47 0.00 0.00 6.09
641 659 1.279527 TTCTTCCGTTACAGCGCACG 61.280 55.000 11.47 11.01 36.12 5.34
653 794 4.038080 CGCACGGACCCTTTTGCC 62.038 66.667 0.00 0.00 0.00 4.52
675 817 6.717540 TGCCAGTAAAGTAAAATTAGCAAGGA 59.282 34.615 0.00 0.00 0.00 3.36
713 855 1.519408 AACAACGCGCCTTTATCACT 58.481 45.000 5.73 0.00 0.00 3.41
730 872 7.843490 TTATCACTCTGTACTGTAAAATGCC 57.157 36.000 0.00 0.00 0.00 4.40
736 878 2.303600 TGTACTGTAAAATGCCCTCCGT 59.696 45.455 0.00 0.00 0.00 4.69
760 902 1.928567 AACCATCCCCATCACCGGT 60.929 57.895 0.00 0.00 0.00 5.28
801 943 0.028902 GTCCGCAATGAATAACGGGC 59.971 55.000 0.00 0.00 45.65 6.13
885 1027 2.509336 CATCCAGTCGACGCACCC 60.509 66.667 10.46 0.00 0.00 4.61
1403 3201 4.054780 TCTACAACTGCAAGAAGAACGT 57.945 40.909 0.00 0.00 37.43 3.99
1407 3205 1.772182 ACTGCAAGAAGAACGTCTCG 58.228 50.000 0.00 0.00 37.43 4.04
1443 3241 2.632377 GAATTGATCGGCTGTCCAGAA 58.368 47.619 0.00 0.00 0.00 3.02
1567 3368 1.567649 AGAAGGGCATGATGGATGTGT 59.432 47.619 0.00 0.00 34.14 3.72
1570 3371 1.133884 AGGGCATGATGGATGTGTCTG 60.134 52.381 0.00 0.00 34.14 3.51
1602 3403 1.071471 CGTTGAGGTGCTGAAGGGT 59.929 57.895 0.00 0.00 0.00 4.34
1785 3586 3.483869 GCATTCTCCCCTCCCGCT 61.484 66.667 0.00 0.00 0.00 5.52
1786 3587 3.049080 GCATTCTCCCCTCCCGCTT 62.049 63.158 0.00 0.00 0.00 4.68
1787 3588 1.609783 CATTCTCCCCTCCCGCTTT 59.390 57.895 0.00 0.00 0.00 3.51
1797 3598 1.463674 CTCCCGCTTTGCATTACCTT 58.536 50.000 0.00 0.00 0.00 3.50
1800 3601 2.029470 TCCCGCTTTGCATTACCTTTTG 60.029 45.455 0.00 0.00 0.00 2.44
1807 3612 3.302365 TGCATTACCTTTTGCTTGCTC 57.698 42.857 0.00 0.00 39.60 4.26
1812 3617 0.312102 ACCTTTTGCTTGCTCGCTTC 59.688 50.000 0.00 0.00 0.00 3.86
1815 3620 2.128853 TTTTGCTTGCTCGCTTCGGG 62.129 55.000 0.00 0.00 0.00 5.14
1818 3623 2.617274 GCTTGCTCGCTTCGGGTTT 61.617 57.895 0.00 0.00 0.00 3.27
1830 3635 2.553079 TCGGGTTTCAAAATATGCGC 57.447 45.000 0.00 0.00 0.00 6.09
1837 3642 4.097286 GGTTTCAAAATATGCGCTCCCTTA 59.903 41.667 9.73 0.00 0.00 2.69
1842 3647 3.923017 AATATGCGCTCCCTTATTTGC 57.077 42.857 9.73 0.00 0.00 3.68
1844 3649 1.312815 ATGCGCTCCCTTATTTGCTC 58.687 50.000 9.73 0.00 0.00 4.26
1845 3650 0.253044 TGCGCTCCCTTATTTGCTCT 59.747 50.000 9.73 0.00 0.00 4.09
1846 3651 0.659957 GCGCTCCCTTATTTGCTCTG 59.340 55.000 0.00 0.00 0.00 3.35
1851 3656 4.202441 GCTCCCTTATTTGCTCTGAATGA 58.798 43.478 0.00 0.00 0.00 2.57
1852 3657 4.641989 GCTCCCTTATTTGCTCTGAATGAA 59.358 41.667 0.00 0.00 0.00 2.57
1854 3659 6.704289 TCCCTTATTTGCTCTGAATGAATG 57.296 37.500 0.00 0.00 0.00 2.67
1855 3660 6.189859 TCCCTTATTTGCTCTGAATGAATGT 58.810 36.000 0.00 0.00 0.00 2.71
1856 3661 6.319658 TCCCTTATTTGCTCTGAATGAATGTC 59.680 38.462 0.00 0.00 0.00 3.06
1857 3662 6.197276 CCTTATTTGCTCTGAATGAATGTCG 58.803 40.000 0.00 0.00 0.00 4.35
1858 3663 6.183360 CCTTATTTGCTCTGAATGAATGTCGT 60.183 38.462 0.00 0.00 0.00 4.34
1859 3664 4.668576 TTTGCTCTGAATGAATGTCGTC 57.331 40.909 0.00 0.00 0.00 4.20
1860 3665 3.317603 TGCTCTGAATGAATGTCGTCA 57.682 42.857 0.00 0.00 0.00 4.35
1863 3668 4.093850 TGCTCTGAATGAATGTCGTCAATG 59.906 41.667 0.00 0.00 0.00 2.82
1864 3669 4.585364 CTCTGAATGAATGTCGTCAATGC 58.415 43.478 0.00 0.00 0.00 3.56
1865 3670 3.374988 TCTGAATGAATGTCGTCAATGCC 59.625 43.478 0.00 0.00 0.00 4.40
1866 3671 2.423185 TGAATGAATGTCGTCAATGCCC 59.577 45.455 0.00 0.00 0.00 5.36
1869 3674 1.271325 TGAATGTCGTCAATGCCCTGT 60.271 47.619 0.00 0.00 0.00 4.00
1871 3676 1.909700 ATGTCGTCAATGCCCTGTTT 58.090 45.000 0.00 0.00 0.00 2.83
1872 3677 1.686355 TGTCGTCAATGCCCTGTTTT 58.314 45.000 0.00 0.00 0.00 2.43
1875 3680 2.028130 TCGTCAATGCCCTGTTTTTGT 58.972 42.857 0.00 0.00 0.00 2.83
1876 3681 2.428890 TCGTCAATGCCCTGTTTTTGTT 59.571 40.909 0.00 0.00 0.00 2.83
1877 3682 3.118956 TCGTCAATGCCCTGTTTTTGTTT 60.119 39.130 0.00 0.00 0.00 2.83
1878 3683 3.245048 CGTCAATGCCCTGTTTTTGTTTC 59.755 43.478 0.00 0.00 0.00 2.78
1879 3684 4.187694 GTCAATGCCCTGTTTTTGTTTCA 58.812 39.130 0.00 0.00 0.00 2.69
1880 3685 4.633565 GTCAATGCCCTGTTTTTGTTTCAA 59.366 37.500 0.00 0.00 0.00 2.69
1881 3686 4.874966 TCAATGCCCTGTTTTTGTTTCAAG 59.125 37.500 0.00 0.00 0.00 3.02
1882 3687 3.258971 TGCCCTGTTTTTGTTTCAAGG 57.741 42.857 0.00 0.00 0.00 3.61
1883 3688 2.834549 TGCCCTGTTTTTGTTTCAAGGA 59.165 40.909 0.00 0.00 0.00 3.36
1884 3689 3.261897 TGCCCTGTTTTTGTTTCAAGGAA 59.738 39.130 0.00 0.00 0.00 3.36
1886 3691 4.826556 CCCTGTTTTTGTTTCAAGGAACA 58.173 39.130 0.00 0.00 37.73 3.18
1887 3692 5.427378 CCCTGTTTTTGTTTCAAGGAACAT 58.573 37.500 0.00 0.00 39.12 2.71
1888 3693 5.879777 CCCTGTTTTTGTTTCAAGGAACATT 59.120 36.000 0.00 0.00 39.12 2.71
1889 3694 6.183360 CCCTGTTTTTGTTTCAAGGAACATTG 60.183 38.462 0.00 0.00 39.12 2.82
1890 3695 6.593382 CCTGTTTTTGTTTCAAGGAACATTGA 59.407 34.615 0.00 0.00 39.12 2.57
1891 3696 7.357951 TGTTTTTGTTTCAAGGAACATTGAC 57.642 32.000 1.43 0.00 38.87 3.18
1892 3697 6.931281 TGTTTTTGTTTCAAGGAACATTGACA 59.069 30.769 1.43 0.00 38.87 3.58
1893 3698 6.959671 TTTTGTTTCAAGGAACATTGACAC 57.040 33.333 10.24 10.24 38.87 3.67
1894 3699 5.913137 TTGTTTCAAGGAACATTGACACT 57.087 34.783 15.64 0.00 39.50 3.55
1895 3700 7.397892 TTTGTTTCAAGGAACATTGACACTA 57.602 32.000 15.64 8.51 39.50 2.74
1896 3701 6.618287 TGTTTCAAGGAACATTGACACTAG 57.382 37.500 15.64 0.00 39.50 2.57
1897 3702 5.008613 TGTTTCAAGGAACATTGACACTAGC 59.991 40.000 15.64 1.25 39.50 3.42
1900 3705 4.696877 TCAAGGAACATTGACACTAGCATG 59.303 41.667 0.00 0.00 34.31 4.06
1909 3714 4.806640 TGACACTAGCATGTGATCTTCA 57.193 40.909 14.57 6.19 40.12 3.02
1920 3725 5.730847 GCATGTGATCTTCAAGCAGAATCAG 60.731 44.000 11.54 0.00 35.25 2.90
1950 3756 6.086871 GCAATTAGCAGTCCTTAACAAACTC 58.913 40.000 0.00 0.00 44.79 3.01
1951 3757 6.307155 CAATTAGCAGTCCTTAACAAACTCG 58.693 40.000 0.00 0.00 0.00 4.18
1952 3758 3.746045 AGCAGTCCTTAACAAACTCGA 57.254 42.857 0.00 0.00 0.00 4.04
1953 3759 3.391049 AGCAGTCCTTAACAAACTCGAC 58.609 45.455 0.00 0.00 0.00 4.20
1956 3762 3.741344 CAGTCCTTAACAAACTCGACCAG 59.259 47.826 0.00 0.00 0.00 4.00
1957 3763 3.387050 AGTCCTTAACAAACTCGACCAGT 59.613 43.478 0.00 0.00 36.64 4.00
1959 3765 4.210746 GTCCTTAACAAACTCGACCAGTTC 59.789 45.833 0.00 0.00 45.32 3.01
1960 3766 4.100498 TCCTTAACAAACTCGACCAGTTCT 59.900 41.667 0.00 0.00 45.32 3.01
1961 3767 4.814771 CCTTAACAAACTCGACCAGTTCTT 59.185 41.667 0.00 0.00 45.32 2.52
1962 3768 5.987347 CCTTAACAAACTCGACCAGTTCTTA 59.013 40.000 0.00 0.00 45.32 2.10
1963 3769 6.145696 CCTTAACAAACTCGACCAGTTCTTAG 59.854 42.308 0.00 0.00 45.32 2.18
1964 3770 4.667519 ACAAACTCGACCAGTTCTTAGT 57.332 40.909 0.00 0.00 45.32 2.24
1965 3771 4.618965 ACAAACTCGACCAGTTCTTAGTC 58.381 43.478 0.00 0.00 45.32 2.59
1973 3779 1.618861 CAGTTCTTAGTCCGCTCGTG 58.381 55.000 0.00 0.00 0.00 4.35
1978 3784 0.592754 CTTAGTCCGCTCGTGCTAGC 60.593 60.000 8.10 8.10 39.21 3.42
1990 3796 0.107459 GTGCTAGCTGCCTAAAGCCT 60.107 55.000 17.23 0.00 44.68 4.58
1992 3798 1.004745 TGCTAGCTGCCTAAAGCCTTT 59.995 47.619 17.23 0.00 44.68 3.11
1993 3799 1.673400 GCTAGCTGCCTAAAGCCTTTC 59.327 52.381 7.70 0.00 44.68 2.62
1994 3800 1.936547 CTAGCTGCCTAAAGCCTTTCG 59.063 52.381 0.00 0.00 44.68 3.46
1995 3801 0.036875 AGCTGCCTAAAGCCTTTCGT 59.963 50.000 0.00 0.00 44.68 3.85
1996 3802 0.881796 GCTGCCTAAAGCCTTTCGTT 59.118 50.000 0.00 0.00 42.71 3.85
1997 3803 1.135660 GCTGCCTAAAGCCTTTCGTTC 60.136 52.381 0.00 0.00 42.71 3.95
2000 3806 3.219281 TGCCTAAAGCCTTTCGTTCTTT 58.781 40.909 0.00 0.00 42.71 2.52
2002 3808 3.004419 GCCTAAAGCCTTTCGTTCTTTGT 59.996 43.478 0.00 0.00 32.85 2.83
2004 3810 3.436700 AAAGCCTTTCGTTCTTTGTGG 57.563 42.857 0.00 0.00 0.00 4.17
2008 3814 1.946768 CCTTTCGTTCTTTGTGGCTCA 59.053 47.619 0.00 0.00 0.00 4.26
2009 3815 2.287009 CCTTTCGTTCTTTGTGGCTCAC 60.287 50.000 0.00 0.00 34.56 3.51
2010 3816 2.325583 TTCGTTCTTTGTGGCTCACT 57.674 45.000 6.83 0.00 35.11 3.41
2011 3817 1.581934 TCGTTCTTTGTGGCTCACTG 58.418 50.000 6.83 0.00 35.11 3.66
2012 3818 0.040958 CGTTCTTTGTGGCTCACTGC 60.041 55.000 6.83 0.00 41.94 4.40
2014 3820 1.024271 TTCTTTGTGGCTCACTGCAC 58.976 50.000 6.83 0.00 45.15 4.57
2015 3821 0.181114 TCTTTGTGGCTCACTGCACT 59.819 50.000 6.83 0.00 45.15 4.40
2016 3822 0.309922 CTTTGTGGCTCACTGCACTG 59.690 55.000 6.83 0.00 45.15 3.66
2018 3824 0.467804 TTGTGGCTCACTGCACTGTA 59.532 50.000 6.83 0.00 45.15 2.74
2019 3825 0.467804 TGTGGCTCACTGCACTGTAA 59.532 50.000 6.83 0.00 45.15 2.41
2023 3829 2.005451 GGCTCACTGCACTGTAATCTG 58.995 52.381 0.00 0.00 45.15 2.90
2040 3846 7.331026 TGTAATCTGTTCTCATAGAAACCAGG 58.669 38.462 7.18 0.00 35.75 4.45
2049 3855 2.185004 TAGAAACCAGGAGCAACAGC 57.815 50.000 0.00 0.00 0.00 4.40
2056 3862 0.390866 CAGGAGCAACAGCATCGTCT 60.391 55.000 0.00 0.00 0.00 4.18
2058 3864 1.135915 AGGAGCAACAGCATCGTCTAG 59.864 52.381 0.00 0.00 0.00 2.43
2059 3865 0.926846 GAGCAACAGCATCGTCTAGC 59.073 55.000 0.00 0.00 0.00 3.42
2060 3866 0.460987 AGCAACAGCATCGTCTAGCC 60.461 55.000 0.00 0.00 0.00 3.93
2061 3867 0.740868 GCAACAGCATCGTCTAGCCA 60.741 55.000 0.00 0.00 0.00 4.75
2063 3869 1.394917 CAACAGCATCGTCTAGCCAAC 59.605 52.381 0.00 0.00 0.00 3.77
2065 3871 2.100197 ACAGCATCGTCTAGCCAACTA 58.900 47.619 0.00 0.00 0.00 2.24
2066 3872 2.695666 ACAGCATCGTCTAGCCAACTAT 59.304 45.455 0.00 0.00 0.00 2.12
2067 3873 3.055591 CAGCATCGTCTAGCCAACTATG 58.944 50.000 0.00 0.00 0.00 2.23
2074 3882 1.822371 TCTAGCCAACTATGACGCACA 59.178 47.619 0.00 0.00 0.00 4.57
2085 3893 5.118990 ACTATGACGCACAGCAATCTAATT 58.881 37.500 0.00 0.00 0.00 1.40
2091 3899 4.032900 ACGCACAGCAATCTAATTAAGTCG 59.967 41.667 0.00 0.00 0.00 4.18
2092 3900 4.032900 CGCACAGCAATCTAATTAAGTCGT 59.967 41.667 0.00 0.00 0.00 4.34
2093 3901 5.445939 CGCACAGCAATCTAATTAAGTCGTT 60.446 40.000 0.00 0.00 0.00 3.85
2121 3929 5.367945 TGAACTTCCTGTTAGGTGTTTCT 57.632 39.130 9.14 0.00 39.30 2.52
2123 3931 5.104693 TGAACTTCCTGTTAGGTGTTTCTCA 60.105 40.000 9.14 3.35 39.30 3.27
2132 3940 0.106149 GGTGTTTCTCAGTGGTCCGT 59.894 55.000 0.00 0.00 0.00 4.69
2133 3941 1.474498 GGTGTTTCTCAGTGGTCCGTT 60.474 52.381 0.00 0.00 0.00 4.44
2134 3942 2.224113 GGTGTTTCTCAGTGGTCCGTTA 60.224 50.000 0.00 0.00 0.00 3.18
2135 3943 3.460103 GTGTTTCTCAGTGGTCCGTTAA 58.540 45.455 0.00 0.00 0.00 2.01
2136 3944 4.062991 GTGTTTCTCAGTGGTCCGTTAAT 58.937 43.478 0.00 0.00 0.00 1.40
2137 3945 4.514066 GTGTTTCTCAGTGGTCCGTTAATT 59.486 41.667 0.00 0.00 0.00 1.40
2138 3946 5.697633 GTGTTTCTCAGTGGTCCGTTAATTA 59.302 40.000 0.00 0.00 0.00 1.40
2150 3958 6.537301 TGGTCCGTTAATTATTAGAACAGCAG 59.463 38.462 0.00 0.00 0.00 4.24
2155 3963 7.414098 CCGTTAATTATTAGAACAGCAGCAAGT 60.414 37.037 0.00 0.00 0.00 3.16
2156 3964 8.600625 CGTTAATTATTAGAACAGCAGCAAGTA 58.399 33.333 0.00 0.00 0.00 2.24
2218 4031 0.461163 CACCACACACGACCTGACAA 60.461 55.000 0.00 0.00 0.00 3.18
2219 4032 0.250793 ACCACACACGACCTGACAAA 59.749 50.000 0.00 0.00 0.00 2.83
2259 4072 1.287815 CAACACGACGGTAGCTGGA 59.712 57.895 0.00 0.00 0.00 3.86
2263 4076 1.025113 CACGACGGTAGCTGGAGAGA 61.025 60.000 0.00 0.00 0.00 3.10
2267 4080 2.494530 CGGTAGCTGGAGAGAGGGC 61.495 68.421 0.00 0.00 0.00 5.19
2270 4083 2.328589 TAGCTGGAGAGAGGGCCCT 61.329 63.158 29.18 29.18 0.00 5.19
2271 4084 2.305314 TAGCTGGAGAGAGGGCCCTC 62.305 65.000 40.50 40.50 43.03 4.30
2300 4113 1.598882 TCGACATCGATAGCTCAGCT 58.401 50.000 3.60 3.60 44.22 4.24
2313 4126 2.047844 CAGCTCAGTGGTGACCGG 60.048 66.667 0.00 0.00 46.27 5.28
2314 4127 2.524394 AGCTCAGTGGTGACCGGT 60.524 61.111 6.92 6.92 0.00 5.28
2321 4134 3.936203 TGGTGACCGGTGACTGCC 61.936 66.667 23.72 8.22 0.00 4.85
2357 4170 1.967597 GCTCGCCGGTTGCTTCTTAC 61.968 60.000 1.90 0.00 38.05 2.34
2365 4178 0.790814 GTTGCTTCTTACGCTTCGCT 59.209 50.000 0.00 0.00 0.00 4.93
2418 4259 1.405661 GCCTCCCGTCTTTCGATCTTT 60.406 52.381 0.00 0.00 42.86 2.52
2434 4275 0.390209 CTTTCTGCGGCCAATTTGGG 60.390 55.000 17.03 2.63 38.19 4.12
2453 4294 2.574450 GGAAGTTTGGTTCGGTTGGTA 58.426 47.619 0.00 0.00 0.00 3.25
2467 4308 2.757099 GGTACCGGCCTCCTCGAA 60.757 66.667 0.00 0.00 0.00 3.71
2469 4310 2.050934 GTACCGGCCTCCTCGAAGT 61.051 63.158 0.00 0.00 0.00 3.01
2506 4352 4.083600 GAAACATCGCGTGCGCCA 62.084 61.111 9.79 0.00 39.59 5.69
2512 4358 1.066752 ATCGCGTGCGCCAGTAATA 59.933 52.632 9.79 0.00 39.59 0.98
2513 4359 0.939577 ATCGCGTGCGCCAGTAATAG 60.940 55.000 9.79 0.00 39.59 1.73
2514 4360 1.587876 CGCGTGCGCCAGTAATAGA 60.588 57.895 4.18 0.00 37.98 1.98
2526 4372 2.039418 AGTAATAGATGGCGCCTGTCA 58.961 47.619 29.70 7.47 0.00 3.58
2527 4373 2.036475 AGTAATAGATGGCGCCTGTCAG 59.964 50.000 29.70 0.00 29.87 3.51
2531 4377 1.218047 GATGGCGCCTGTCAGTGTA 59.782 57.895 29.70 3.35 29.87 2.90
2532 4378 0.807667 GATGGCGCCTGTCAGTGTAG 60.808 60.000 29.70 0.00 29.87 2.74
2533 4379 1.544825 ATGGCGCCTGTCAGTGTAGT 61.545 55.000 29.70 0.00 29.87 2.73
2535 4381 1.738099 GCGCCTGTCAGTGTAGTGG 60.738 63.158 0.00 0.00 0.00 4.00
2536 4382 1.666011 CGCCTGTCAGTGTAGTGGT 59.334 57.895 0.00 0.00 0.00 4.16
2537 4383 0.885879 CGCCTGTCAGTGTAGTGGTA 59.114 55.000 0.00 0.00 0.00 3.25
2538 4384 1.402456 CGCCTGTCAGTGTAGTGGTAC 60.402 57.143 0.00 0.00 0.00 3.34
2539 4385 1.893801 GCCTGTCAGTGTAGTGGTACT 59.106 52.381 0.00 0.00 0.00 2.73
2540 4386 2.352814 GCCTGTCAGTGTAGTGGTACTG 60.353 54.545 0.00 0.00 44.31 2.74
2541 4387 2.891580 CCTGTCAGTGTAGTGGTACTGT 59.108 50.000 0.00 0.00 43.59 3.55
2544 4390 4.463070 TGTCAGTGTAGTGGTACTGTACA 58.537 43.478 18.79 0.00 43.59 2.90
2545 4391 4.888823 TGTCAGTGTAGTGGTACTGTACAA 59.111 41.667 18.79 5.58 43.59 2.41
2568 4425 0.774276 TACCTTGGGCAATGACCACA 59.226 50.000 7.66 0.00 42.46 4.17
2606 4463 1.002684 CATCAGCGTCTCGTACCTACC 60.003 57.143 0.00 0.00 0.00 3.18
2625 4491 0.942962 CGGGCTACTACAGTAGGACG 59.057 60.000 16.22 0.00 46.07 4.79
2633 4499 2.818432 ACTACAGTAGGACGACCAGTTG 59.182 50.000 12.42 3.57 38.94 3.16
2644 4510 2.521465 CCAGTTGGGTTGCAGCCA 60.521 61.111 22.07 12.13 45.25 4.75
2652 4518 1.099879 GGGTTGCAGCCAGCTATCAG 61.100 60.000 22.07 0.00 45.94 2.90
2689 4555 9.932207 TTTGCAACTTCTATCATTCAAAATCAT 57.068 25.926 0.00 0.00 0.00 2.45
2698 4564 9.925545 TCTATCATTCAAAATCATATATGGGGG 57.074 33.333 12.78 0.00 0.00 5.40
2699 4565 9.925545 CTATCATTCAAAATCATATATGGGGGA 57.074 33.333 12.78 1.95 0.00 4.81
2700 4566 8.834004 ATCATTCAAAATCATATATGGGGGAG 57.166 34.615 12.78 1.71 0.00 4.30
2701 4567 7.999042 TCATTCAAAATCATATATGGGGGAGA 58.001 34.615 12.78 3.90 0.00 3.71
2702 4568 7.890127 TCATTCAAAATCATATATGGGGGAGAC 59.110 37.037 12.78 0.00 0.00 3.36
2703 4569 6.778542 TCAAAATCATATATGGGGGAGACA 57.221 37.500 12.78 0.00 0.00 3.41
2704 4570 7.160457 TCAAAATCATATATGGGGGAGACAA 57.840 36.000 12.78 0.00 0.00 3.18
2705 4571 7.004086 TCAAAATCATATATGGGGGAGACAAC 58.996 38.462 12.78 0.00 0.00 3.32
2706 4572 6.529084 AAATCATATATGGGGGAGACAACA 57.471 37.500 12.78 0.00 0.00 3.33
2707 4573 6.529084 AATCATATATGGGGGAGACAACAA 57.471 37.500 12.78 0.00 0.00 2.83
2708 4574 5.304686 TCATATATGGGGGAGACAACAAC 57.695 43.478 12.78 0.00 0.00 3.32
2709 4575 4.724293 TCATATATGGGGGAGACAACAACA 59.276 41.667 12.78 0.00 0.00 3.33
2710 4576 3.652057 ATATGGGGGAGACAACAACAG 57.348 47.619 0.00 0.00 0.00 3.16
2711 4577 1.444933 ATGGGGGAGACAACAACAGA 58.555 50.000 0.00 0.00 0.00 3.41
2712 4578 1.217916 TGGGGGAGACAACAACAGAA 58.782 50.000 0.00 0.00 0.00 3.02
2713 4579 1.142870 TGGGGGAGACAACAACAGAAG 59.857 52.381 0.00 0.00 0.00 2.85
2714 4580 1.239347 GGGGAGACAACAACAGAAGC 58.761 55.000 0.00 0.00 0.00 3.86
2715 4581 1.202818 GGGGAGACAACAACAGAAGCT 60.203 52.381 0.00 0.00 0.00 3.74
2716 4582 2.038557 GGGGAGACAACAACAGAAGCTA 59.961 50.000 0.00 0.00 0.00 3.32
2717 4583 3.496160 GGGGAGACAACAACAGAAGCTAA 60.496 47.826 0.00 0.00 0.00 3.09
2718 4584 4.327680 GGGAGACAACAACAGAAGCTAAT 58.672 43.478 0.00 0.00 0.00 1.73
2719 4585 4.393371 GGGAGACAACAACAGAAGCTAATC 59.607 45.833 0.00 0.00 0.00 1.75
2720 4586 5.241662 GGAGACAACAACAGAAGCTAATCT 58.758 41.667 0.00 0.00 0.00 2.40
2721 4587 5.703130 GGAGACAACAACAGAAGCTAATCTT 59.297 40.000 0.00 0.00 37.83 2.40
2722 4588 6.874134 GGAGACAACAACAGAAGCTAATCTTA 59.126 38.462 0.00 0.00 34.56 2.10
2723 4589 7.064016 GGAGACAACAACAGAAGCTAATCTTAG 59.936 40.741 0.00 0.00 34.56 2.18
2724 4590 7.671302 AGACAACAACAGAAGCTAATCTTAGA 58.329 34.615 1.13 0.00 34.56 2.10
2725 4591 7.816995 AGACAACAACAGAAGCTAATCTTAGAG 59.183 37.037 1.13 0.00 34.56 2.43
2726 4592 6.370166 ACAACAACAGAAGCTAATCTTAGAGC 59.630 38.462 1.13 0.00 39.08 4.09
2727 4593 6.042638 ACAACAGAAGCTAATCTTAGAGCA 57.957 37.500 1.13 0.00 41.36 4.26
2728 4594 6.467677 ACAACAGAAGCTAATCTTAGAGCAA 58.532 36.000 1.13 0.00 41.36 3.91
2729 4595 6.370166 ACAACAGAAGCTAATCTTAGAGCAAC 59.630 38.462 1.13 0.00 41.36 4.17
2730 4596 6.293004 ACAGAAGCTAATCTTAGAGCAACT 57.707 37.500 1.13 0.00 41.36 3.16
2731 4597 6.706295 ACAGAAGCTAATCTTAGAGCAACTT 58.294 36.000 1.13 0.00 41.36 2.66
2732 4598 6.816140 ACAGAAGCTAATCTTAGAGCAACTTC 59.184 38.462 1.13 8.74 41.36 3.01
2733 4599 6.815641 CAGAAGCTAATCTTAGAGCAACTTCA 59.184 38.462 15.30 0.00 41.36 3.02
2734 4600 7.332926 CAGAAGCTAATCTTAGAGCAACTTCAA 59.667 37.037 15.30 0.00 41.36 2.69
2735 4601 8.046107 AGAAGCTAATCTTAGAGCAACTTCAAT 58.954 33.333 15.30 0.27 41.36 2.57
2736 4602 7.551035 AGCTAATCTTAGAGCAACTTCAATG 57.449 36.000 1.13 0.00 41.36 2.82
2737 4603 6.541641 AGCTAATCTTAGAGCAACTTCAATGG 59.458 38.462 1.13 0.00 41.36 3.16
2738 4604 6.238593 GCTAATCTTAGAGCAACTTCAATGGG 60.239 42.308 1.13 0.00 38.62 4.00
2739 4605 3.955471 TCTTAGAGCAACTTCAATGGGG 58.045 45.455 0.00 0.00 0.00 4.96
2740 4606 2.128771 TAGAGCAACTTCAATGGGGC 57.871 50.000 0.00 0.00 0.00 5.80
2741 4607 0.962356 AGAGCAACTTCAATGGGGCG 60.962 55.000 0.00 0.00 0.00 6.13
2742 4608 0.960364 GAGCAACTTCAATGGGGCGA 60.960 55.000 0.00 0.00 0.00 5.54
2743 4609 0.323725 AGCAACTTCAATGGGGCGAT 60.324 50.000 0.00 0.00 0.00 4.58
2744 4610 0.101219 GCAACTTCAATGGGGCGATC 59.899 55.000 0.00 0.00 0.00 3.69
2745 4611 0.740737 CAACTTCAATGGGGCGATCC 59.259 55.000 0.00 0.00 0.00 3.36
2746 4612 0.331278 AACTTCAATGGGGCGATCCA 59.669 50.000 0.00 0.00 41.60 3.41
2748 4614 1.774254 ACTTCAATGGGGCGATCCATA 59.226 47.619 9.83 0.00 46.05 2.74
2749 4615 2.154462 CTTCAATGGGGCGATCCATAC 58.846 52.381 9.83 0.00 46.05 2.39
2750 4616 0.400213 TCAATGGGGCGATCCATACC 59.600 55.000 9.83 0.00 46.05 2.73
2751 4617 0.955428 CAATGGGGCGATCCATACCG 60.955 60.000 9.83 0.00 46.05 4.02
2752 4618 1.415672 AATGGGGCGATCCATACCGT 61.416 55.000 9.83 0.00 46.05 4.83
2753 4619 1.827399 ATGGGGCGATCCATACCGTC 61.827 60.000 8.00 0.00 45.03 4.79
2754 4620 2.342648 GGGCGATCCATACCGTCC 59.657 66.667 0.00 0.00 43.55 4.79
2755 4621 2.049433 GGCGATCCATACCGTCCG 60.049 66.667 0.00 0.00 0.00 4.79
2756 4622 2.733593 GCGATCCATACCGTCCGC 60.734 66.667 0.00 0.00 35.91 5.54
2757 4623 2.049433 CGATCCATACCGTCCGCC 60.049 66.667 0.00 0.00 0.00 6.13
2758 4624 2.342648 GATCCATACCGTCCGCCC 59.657 66.667 0.00 0.00 0.00 6.13
2759 4625 3.569049 GATCCATACCGTCCGCCCG 62.569 68.421 0.00 0.00 0.00 6.13
2781 4647 2.738480 CGTTTGGGTCGGAGTGGA 59.262 61.111 0.00 0.00 0.00 4.02
2782 4648 1.666872 CGTTTGGGTCGGAGTGGAC 60.667 63.158 0.00 0.00 36.18 4.02
2783 4649 1.448497 GTTTGGGTCGGAGTGGACA 59.552 57.895 0.00 0.00 38.70 4.02
2784 4650 0.179040 GTTTGGGTCGGAGTGGACAA 60.179 55.000 0.00 0.00 38.70 3.18
2785 4651 0.547075 TTTGGGTCGGAGTGGACAAA 59.453 50.000 0.00 0.00 38.70 2.83
2786 4652 0.547075 TTGGGTCGGAGTGGACAAAA 59.453 50.000 0.00 0.00 38.70 2.44
2787 4653 0.107831 TGGGTCGGAGTGGACAAAAG 59.892 55.000 0.00 0.00 38.70 2.27
2788 4654 0.108019 GGGTCGGAGTGGACAAAAGT 59.892 55.000 0.00 0.00 38.70 2.66
2789 4655 1.226746 GGTCGGAGTGGACAAAAGTG 58.773 55.000 0.00 0.00 38.70 3.16
2790 4656 1.226746 GTCGGAGTGGACAAAAGTGG 58.773 55.000 0.00 0.00 36.91 4.00
2791 4657 0.534203 TCGGAGTGGACAAAAGTGGC 60.534 55.000 0.00 0.00 0.00 5.01
2792 4658 1.841663 CGGAGTGGACAAAAGTGGCG 61.842 60.000 0.00 0.00 31.03 5.69
2793 4659 1.515521 GGAGTGGACAAAAGTGGCGG 61.516 60.000 0.00 0.00 31.03 6.13
2794 4660 2.130073 GAGTGGACAAAAGTGGCGGC 62.130 60.000 0.00 0.00 31.03 6.53
2795 4661 2.909965 TGGACAAAAGTGGCGGCC 60.910 61.111 13.32 13.32 31.03 6.13
2796 4662 3.680786 GGACAAAAGTGGCGGCCC 61.681 66.667 17.97 8.02 31.03 5.80
2797 4663 2.909965 GACAAAAGTGGCGGCCCA 60.910 61.111 17.97 1.34 39.32 5.36
2798 4664 2.443016 ACAAAAGTGGCGGCCCAA 60.443 55.556 17.97 0.00 44.33 4.12
2799 4665 2.028925 CAAAAGTGGCGGCCCAAC 59.971 61.111 17.97 9.12 44.33 3.77
2800 4666 2.443016 AAAAGTGGCGGCCCAACA 60.443 55.556 17.97 0.00 44.33 3.33
2801 4667 2.791868 AAAAGTGGCGGCCCAACAC 61.792 57.895 17.97 7.91 44.33 3.32
2811 4677 4.939368 CCCAACACGCCGACCCAA 62.939 66.667 0.00 0.00 0.00 4.12
2812 4678 2.902846 CCAACACGCCGACCCAAA 60.903 61.111 0.00 0.00 0.00 3.28
2813 4679 2.330041 CAACACGCCGACCCAAAC 59.670 61.111 0.00 0.00 0.00 2.93
2814 4680 2.903350 AACACGCCGACCCAAACC 60.903 61.111 0.00 0.00 0.00 3.27
2815 4681 4.941309 ACACGCCGACCCAAACCC 62.941 66.667 0.00 0.00 0.00 4.11
2816 4682 4.939368 CACGCCGACCCAAACCCA 62.939 66.667 0.00 0.00 0.00 4.51
2817 4683 3.961414 ACGCCGACCCAAACCCAT 61.961 61.111 0.00 0.00 0.00 4.00
2818 4684 2.675075 CGCCGACCCAAACCCATT 60.675 61.111 0.00 0.00 0.00 3.16
2819 4685 2.272447 CGCCGACCCAAACCCATTT 61.272 57.895 0.00 0.00 0.00 2.32
2820 4686 1.589630 GCCGACCCAAACCCATTTC 59.410 57.895 0.00 0.00 0.00 2.17
2821 4687 1.182385 GCCGACCCAAACCCATTTCA 61.182 55.000 0.00 0.00 0.00 2.69
2822 4688 0.601057 CCGACCCAAACCCATTTCAC 59.399 55.000 0.00 0.00 0.00 3.18
2823 4689 0.239879 CGACCCAAACCCATTTCACG 59.760 55.000 0.00 0.00 0.00 4.35
2824 4690 1.324383 GACCCAAACCCATTTCACGT 58.676 50.000 0.00 0.00 0.00 4.49
2825 4691 1.268625 GACCCAAACCCATTTCACGTC 59.731 52.381 0.00 0.00 0.00 4.34
2826 4692 0.601057 CCCAAACCCATTTCACGTCC 59.399 55.000 0.00 0.00 0.00 4.79
2827 4693 0.239879 CCAAACCCATTTCACGTCCG 59.760 55.000 0.00 0.00 0.00 4.79
2828 4694 0.386731 CAAACCCATTTCACGTCCGC 60.387 55.000 0.00 0.00 0.00 5.54
2829 4695 1.847890 AAACCCATTTCACGTCCGCG 61.848 55.000 0.00 0.00 44.93 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 117 7.592439 TCCCGAACGTTTGTTTTAAATTTTT 57.408 28.000 14.38 0.00 38.78 1.94
119 121 6.979238 TGATTTCCCGAACGTTTGTTTTAAAT 59.021 30.769 14.38 12.57 38.78 1.40
226 228 7.881142 TCGGCGAATATTTTTCCATTCATAAT 58.119 30.769 7.35 0.00 0.00 1.28
227 229 7.265647 TCGGCGAATATTTTTCCATTCATAA 57.734 32.000 7.35 0.00 0.00 1.90
229 231 5.766150 TCGGCGAATATTTTTCCATTCAT 57.234 34.783 7.35 0.00 0.00 2.57
230 232 5.766150 ATCGGCGAATATTTTTCCATTCA 57.234 34.783 15.93 0.00 0.00 2.57
231 233 6.205784 TGAATCGGCGAATATTTTTCCATTC 58.794 36.000 15.93 9.08 0.00 2.67
234 236 5.568685 TTGAATCGGCGAATATTTTTCCA 57.431 34.783 15.93 0.57 0.00 3.53
235 237 6.879188 TTTTGAATCGGCGAATATTTTTCC 57.121 33.333 15.93 0.00 0.00 3.13
300 308 8.450180 GTTGGTGAAACAACTTTTGAAATTCAT 58.550 29.630 3.95 0.00 45.49 2.57
342 350 4.434989 CGGCGAACATTTTTAGAATCGACA 60.435 41.667 0.00 0.00 38.18 4.35
489 507 8.326713 CACATTTGAAATCGTGAACATTTTTCA 58.673 29.630 12.15 0.00 35.23 2.69
490 508 8.327429 ACACATTTGAAATCGTGAACATTTTTC 58.673 29.630 19.70 0.00 33.56 2.29
491 509 8.115520 CACACATTTGAAATCGTGAACATTTTT 58.884 29.630 19.70 1.42 33.56 1.94
492 510 7.620215 CACACATTTGAAATCGTGAACATTTT 58.380 30.769 19.70 1.93 33.56 1.82
493 511 6.292274 GCACACATTTGAAATCGTGAACATTT 60.292 34.615 19.70 2.43 33.56 2.32
494 512 5.175491 GCACACATTTGAAATCGTGAACATT 59.825 36.000 19.70 2.93 33.56 2.71
495 513 4.681025 GCACACATTTGAAATCGTGAACAT 59.319 37.500 19.70 3.18 33.56 2.71
496 514 4.041049 GCACACATTTGAAATCGTGAACA 58.959 39.130 19.70 0.00 33.56 3.18
497 515 4.041049 TGCACACATTTGAAATCGTGAAC 58.959 39.130 19.70 13.74 33.56 3.18
498 516 4.298744 TGCACACATTTGAAATCGTGAA 57.701 36.364 19.70 9.45 33.56 3.18
499 517 3.978718 TGCACACATTTGAAATCGTGA 57.021 38.095 19.70 6.38 33.56 4.35
500 518 4.228317 TCATGCACACATTTGAAATCGTG 58.772 39.130 14.51 14.51 32.87 4.35
501 519 4.478699 CTCATGCACACATTTGAAATCGT 58.521 39.130 0.00 0.00 32.87 3.73
502 520 3.302434 GCTCATGCACACATTTGAAATCG 59.698 43.478 0.00 0.00 39.41 3.34
503 521 3.615496 GGCTCATGCACACATTTGAAATC 59.385 43.478 0.00 0.00 41.91 2.17
504 522 3.259876 AGGCTCATGCACACATTTGAAAT 59.740 39.130 0.00 0.00 41.91 2.17
505 523 2.629137 AGGCTCATGCACACATTTGAAA 59.371 40.909 0.00 0.00 41.91 2.69
506 524 2.241160 AGGCTCATGCACACATTTGAA 58.759 42.857 0.00 0.00 41.91 2.69
507 525 1.913778 AGGCTCATGCACACATTTGA 58.086 45.000 0.00 0.00 41.91 2.69
508 526 3.853831 TTAGGCTCATGCACACATTTG 57.146 42.857 0.00 0.00 41.91 2.32
509 527 4.870123 TTTTAGGCTCATGCACACATTT 57.130 36.364 0.00 0.00 41.91 2.32
510 528 4.870123 TTTTTAGGCTCATGCACACATT 57.130 36.364 0.00 0.00 41.91 2.71
537 555 7.138736 ACCACTCTTAATTTCGTGAAAACATG 58.861 34.615 0.00 0.00 33.56 3.21
541 559 7.496591 ACACTACCACTCTTAATTTCGTGAAAA 59.503 33.333 0.00 0.00 33.56 2.29
570 588 3.367190 CCACATTTTGTTGCATCATCGGA 60.367 43.478 0.00 0.00 0.00 4.55
616 634 3.978855 GCGCTGTAACGGAAGAAAAATTT 59.021 39.130 0.00 0.00 0.00 1.82
618 636 2.550606 TGCGCTGTAACGGAAGAAAAAT 59.449 40.909 9.73 0.00 0.00 1.82
629 647 3.116531 GGGTCCGTGCGCTGTAAC 61.117 66.667 9.73 1.71 0.00 2.50
630 648 2.386064 AAAGGGTCCGTGCGCTGTAA 62.386 55.000 9.73 0.00 0.00 2.41
632 650 3.767630 AAAAGGGTCCGTGCGCTGT 62.768 57.895 9.73 0.00 0.00 4.40
638 656 0.250553 TACTGGCAAAAGGGTCCGTG 60.251 55.000 0.00 0.00 0.00 4.94
639 657 0.475044 TTACTGGCAAAAGGGTCCGT 59.525 50.000 0.00 0.00 0.00 4.69
641 659 2.594131 ACTTTACTGGCAAAAGGGTCC 58.406 47.619 14.36 0.00 38.09 4.46
642 660 5.777850 TTTACTTTACTGGCAAAAGGGTC 57.222 39.130 14.36 0.00 38.09 4.46
643 661 6.740944 ATTTTACTTTACTGGCAAAAGGGT 57.259 33.333 14.36 0.00 38.09 4.34
653 794 8.451748 GGACTCCTTGCTAATTTTACTTTACTG 58.548 37.037 0.00 0.00 0.00 2.74
675 817 5.717078 TGTTAGTTATCACTGTTCGGACT 57.283 39.130 0.00 0.00 34.06 3.85
713 855 3.369052 CGGAGGGCATTTTACAGTACAGA 60.369 47.826 0.00 0.00 0.00 3.41
730 872 1.078426 GATGGTTGTGGGACGGAGG 60.078 63.158 0.00 0.00 0.00 4.30
736 878 0.848648 TGATGGGGATGGTTGTGGGA 60.849 55.000 0.00 0.00 0.00 4.37
801 943 1.209275 GACGATCCGACCTTGCATCG 61.209 60.000 1.17 1.17 43.06 3.84
885 1027 4.832608 GTTAGGCTGGGGGCGACG 62.833 72.222 0.00 0.00 42.94 5.12
1090 1261 1.623542 GGGTAGGCGATGGTCAGGTT 61.624 60.000 0.00 0.00 0.00 3.50
1173 1344 0.693049 GGATCAGGGTGGTGTTGTCT 59.307 55.000 0.00 0.00 0.00 3.41
1283 1454 0.740737 GCAGCTGGTTGTGTTGAAGT 59.259 50.000 17.12 0.00 0.00 3.01
1353 3151 1.174078 TGTTGGAGTCCGAGTGCGTA 61.174 55.000 4.30 0.00 35.23 4.42
1443 3241 4.863491 ACACGTACGAACTCTTGTTGTAT 58.137 39.130 24.41 0.00 36.39 2.29
1567 3368 3.024547 CAACGTATCTTCTCTCCCCAGA 58.975 50.000 0.00 0.00 0.00 3.86
1570 3371 2.362717 CCTCAACGTATCTTCTCTCCCC 59.637 54.545 0.00 0.00 0.00 4.81
1602 3403 1.272490 CTGTAGCTCAGTTCGAACCCA 59.728 52.381 24.22 10.41 39.17 4.51
1739 3540 2.659897 CGCTAGCGCACAGATCCC 60.660 66.667 26.07 0.00 35.30 3.85
1745 3546 1.717791 ATACGTACCGCTAGCGCACA 61.718 55.000 31.35 15.03 38.24 4.57
1765 3566 1.768684 GCGGGAGGGGAGAATGCATA 61.769 60.000 0.00 0.00 0.00 3.14
1770 3571 1.609783 CAAAGCGGGAGGGGAGAAT 59.390 57.895 0.00 0.00 0.00 2.40
1776 3577 1.384222 GGTAATGCAAAGCGGGAGGG 61.384 60.000 0.00 0.00 0.00 4.30
1785 3586 4.057432 GAGCAAGCAAAAGGTAATGCAAA 58.943 39.130 0.00 0.00 44.95 3.68
1786 3587 3.652274 GAGCAAGCAAAAGGTAATGCAA 58.348 40.909 0.00 0.00 44.95 4.08
1787 3588 2.351641 CGAGCAAGCAAAAGGTAATGCA 60.352 45.455 0.00 0.00 44.95 3.96
1797 3598 2.616330 CCCGAAGCGAGCAAGCAAA 61.616 57.895 6.21 0.00 40.15 3.68
1800 3601 2.514505 GAAACCCGAAGCGAGCAAGC 62.515 60.000 0.00 0.00 37.41 4.01
1807 3612 2.851824 GCATATTTTGAAACCCGAAGCG 59.148 45.455 0.00 0.00 0.00 4.68
1812 3617 2.450160 GAGCGCATATTTTGAAACCCG 58.550 47.619 11.47 0.00 0.00 5.28
1815 3620 3.782889 AGGGAGCGCATATTTTGAAAC 57.217 42.857 11.47 0.00 0.00 2.78
1818 3623 5.735922 GCAAATAAGGGAGCGCATATTTTGA 60.736 40.000 11.47 0.00 0.00 2.69
1830 3635 6.320672 ACATTCATTCAGAGCAAATAAGGGAG 59.679 38.462 0.00 0.00 0.00 4.30
1837 3642 4.696877 TGACGACATTCATTCAGAGCAAAT 59.303 37.500 0.00 0.00 0.00 2.32
1842 3647 4.495349 GGCATTGACGACATTCATTCAGAG 60.495 45.833 0.00 0.00 0.00 3.35
1844 3649 3.488047 GGGCATTGACGACATTCATTCAG 60.488 47.826 0.00 0.00 0.00 3.02
1845 3650 2.423185 GGGCATTGACGACATTCATTCA 59.577 45.455 0.00 0.00 0.00 2.57
1846 3651 2.684881 AGGGCATTGACGACATTCATTC 59.315 45.455 0.00 0.00 0.00 2.67
1851 3656 1.909700 AACAGGGCATTGACGACATT 58.090 45.000 0.00 0.00 0.00 2.71
1852 3657 1.909700 AAACAGGGCATTGACGACAT 58.090 45.000 0.00 0.00 0.00 3.06
1854 3659 2.223711 ACAAAAACAGGGCATTGACGAC 60.224 45.455 0.00 0.00 0.00 4.34
1855 3660 2.028130 ACAAAAACAGGGCATTGACGA 58.972 42.857 0.00 0.00 0.00 4.20
1856 3661 2.507339 ACAAAAACAGGGCATTGACG 57.493 45.000 0.00 0.00 0.00 4.35
1857 3662 4.187694 TGAAACAAAAACAGGGCATTGAC 58.812 39.130 0.00 0.00 0.00 3.18
1858 3663 4.478206 TGAAACAAAAACAGGGCATTGA 57.522 36.364 0.00 0.00 0.00 2.57
1859 3664 4.035441 CCTTGAAACAAAAACAGGGCATTG 59.965 41.667 0.00 0.00 0.00 2.82
1860 3665 4.080638 TCCTTGAAACAAAAACAGGGCATT 60.081 37.500 0.00 0.00 32.14 3.56
1863 3668 3.535280 TCCTTGAAACAAAAACAGGGC 57.465 42.857 0.00 0.00 32.14 5.19
1864 3669 4.826556 TGTTCCTTGAAACAAAAACAGGG 58.173 39.130 0.00 0.00 36.25 4.45
1865 3670 6.593382 TCAATGTTCCTTGAAACAAAAACAGG 59.407 34.615 13.37 10.05 42.10 4.00
1866 3671 7.117523 TGTCAATGTTCCTTGAAACAAAAACAG 59.882 33.333 13.37 5.84 42.10 3.16
1869 3674 7.158021 AGTGTCAATGTTCCTTGAAACAAAAA 58.842 30.769 9.19 0.00 43.13 1.94
1871 3676 6.279513 AGTGTCAATGTTCCTTGAAACAAA 57.720 33.333 9.19 0.00 43.13 2.83
1872 3677 5.913137 AGTGTCAATGTTCCTTGAAACAA 57.087 34.783 9.19 0.00 43.13 2.83
1875 3680 5.129634 TGCTAGTGTCAATGTTCCTTGAAA 58.870 37.500 0.00 0.00 36.92 2.69
1876 3681 4.713553 TGCTAGTGTCAATGTTCCTTGAA 58.286 39.130 0.00 0.00 36.92 2.69
1877 3682 4.350368 TGCTAGTGTCAATGTTCCTTGA 57.650 40.909 0.00 0.00 32.84 3.02
1878 3683 4.456911 ACATGCTAGTGTCAATGTTCCTTG 59.543 41.667 0.00 0.00 0.00 3.61
1879 3684 4.456911 CACATGCTAGTGTCAATGTTCCTT 59.543 41.667 0.00 0.00 34.83 3.36
1880 3685 4.005650 CACATGCTAGTGTCAATGTTCCT 58.994 43.478 0.00 0.00 34.83 3.36
1881 3686 4.002982 TCACATGCTAGTGTCAATGTTCC 58.997 43.478 8.57 0.00 40.37 3.62
1882 3687 5.583854 AGATCACATGCTAGTGTCAATGTTC 59.416 40.000 8.57 0.00 40.37 3.18
1883 3688 5.494724 AGATCACATGCTAGTGTCAATGTT 58.505 37.500 8.57 0.00 40.37 2.71
1884 3689 5.095145 AGATCACATGCTAGTGTCAATGT 57.905 39.130 8.57 0.00 40.37 2.71
1886 3691 5.737860 TGAAGATCACATGCTAGTGTCAAT 58.262 37.500 8.57 0.00 40.37 2.57
1887 3692 5.151297 TGAAGATCACATGCTAGTGTCAA 57.849 39.130 8.57 0.00 40.37 3.18
1888 3693 4.806640 TGAAGATCACATGCTAGTGTCA 57.193 40.909 8.57 3.46 40.37 3.58
1889 3694 4.033817 GCTTGAAGATCACATGCTAGTGTC 59.966 45.833 17.12 6.38 40.37 3.67
1890 3695 3.937706 GCTTGAAGATCACATGCTAGTGT 59.062 43.478 17.12 0.00 40.37 3.55
1891 3696 3.937079 TGCTTGAAGATCACATGCTAGTG 59.063 43.478 21.50 3.14 38.58 2.74
1892 3697 4.081254 TCTGCTTGAAGATCACATGCTAGT 60.081 41.667 21.50 0.00 38.58 2.57
1893 3698 4.439968 TCTGCTTGAAGATCACATGCTAG 58.560 43.478 21.50 17.95 38.58 3.42
1894 3699 4.476628 TCTGCTTGAAGATCACATGCTA 57.523 40.909 21.50 12.82 38.58 3.49
1895 3700 3.345508 TCTGCTTGAAGATCACATGCT 57.654 42.857 21.50 0.00 38.58 3.79
1896 3701 4.095932 TGATTCTGCTTGAAGATCACATGC 59.904 41.667 17.37 17.37 38.18 4.06
1897 3702 5.730847 GCTGATTCTGCTTGAAGATCACATG 60.731 44.000 8.16 0.00 38.18 3.21
1900 3705 3.940221 AGCTGATTCTGCTTGAAGATCAC 59.060 43.478 11.83 0.00 38.18 3.06
1927 3733 6.147164 TCGAGTTTGTTAAGGACTGCTAATTG 59.853 38.462 0.00 0.00 0.00 2.32
1929 3735 5.638234 GTCGAGTTTGTTAAGGACTGCTAAT 59.362 40.000 0.00 0.00 0.00 1.73
1930 3736 4.986659 GTCGAGTTTGTTAAGGACTGCTAA 59.013 41.667 0.00 0.00 0.00 3.09
1935 3741 3.387050 ACTGGTCGAGTTTGTTAAGGACT 59.613 43.478 0.00 0.00 0.00 3.85
1940 3746 6.576185 ACTAAGAACTGGTCGAGTTTGTTAA 58.424 36.000 1.45 0.00 45.48 2.01
1943 3749 4.501058 GGACTAAGAACTGGTCGAGTTTGT 60.501 45.833 1.45 0.27 45.48 2.83
1947 3753 1.811359 CGGACTAAGAACTGGTCGAGT 59.189 52.381 3.38 3.38 35.94 4.18
1950 3756 0.526662 AGCGGACTAAGAACTGGTCG 59.473 55.000 0.00 0.00 0.00 4.79
1951 3757 1.467713 CGAGCGGACTAAGAACTGGTC 60.468 57.143 0.00 0.00 36.80 4.02
1952 3758 0.526662 CGAGCGGACTAAGAACTGGT 59.473 55.000 0.00 0.00 0.00 4.00
1953 3759 0.526662 ACGAGCGGACTAAGAACTGG 59.473 55.000 0.00 0.00 0.00 4.00
1956 3762 2.360794 GCACGAGCGGACTAAGAAC 58.639 57.895 0.00 0.00 0.00 3.01
1957 3763 4.883026 GCACGAGCGGACTAAGAA 57.117 55.556 0.00 0.00 0.00 2.52
1973 3779 1.673400 GAAAGGCTTTAGGCAGCTAGC 59.327 52.381 13.37 6.62 44.01 3.42
1978 3784 2.427506 AGAACGAAAGGCTTTAGGCAG 58.572 47.619 21.52 10.14 44.01 4.85
1990 3796 2.354510 CAGTGAGCCACAAAGAACGAAA 59.645 45.455 7.86 0.00 36.74 3.46
1992 3798 1.581934 CAGTGAGCCACAAAGAACGA 58.418 50.000 7.86 0.00 36.74 3.85
1993 3799 0.040958 GCAGTGAGCCACAAAGAACG 60.041 55.000 0.00 0.00 36.74 3.95
1994 3800 1.024271 TGCAGTGAGCCACAAAGAAC 58.976 50.000 0.00 0.00 44.83 3.01
1995 3801 1.024271 GTGCAGTGAGCCACAAAGAA 58.976 50.000 0.00 0.00 44.83 2.52
1996 3802 0.181114 AGTGCAGTGAGCCACAAAGA 59.819 50.000 0.00 0.00 44.83 2.52
1997 3803 0.309922 CAGTGCAGTGAGCCACAAAG 59.690 55.000 16.94 0.00 44.83 2.77
2000 3806 0.467804 TTACAGTGCAGTGAGCCACA 59.532 50.000 28.02 2.98 44.83 4.17
2002 3808 1.625315 AGATTACAGTGCAGTGAGCCA 59.375 47.619 28.02 8.63 44.83 4.75
2004 3810 2.693069 ACAGATTACAGTGCAGTGAGC 58.307 47.619 28.02 9.44 45.96 4.26
2008 3814 4.607293 TGAGAACAGATTACAGTGCAGT 57.393 40.909 0.00 0.00 0.00 4.40
2009 3815 6.567959 TCTATGAGAACAGATTACAGTGCAG 58.432 40.000 0.00 0.00 0.00 4.41
2010 3816 6.530019 TCTATGAGAACAGATTACAGTGCA 57.470 37.500 0.00 0.00 0.00 4.57
2011 3817 7.201565 GGTTTCTATGAGAACAGATTACAGTGC 60.202 40.741 0.00 0.00 33.26 4.40
2012 3818 7.819415 TGGTTTCTATGAGAACAGATTACAGTG 59.181 37.037 0.00 0.00 33.26 3.66
2014 3820 7.493971 CCTGGTTTCTATGAGAACAGATTACAG 59.506 40.741 4.95 0.00 32.93 2.74
2015 3821 7.180229 TCCTGGTTTCTATGAGAACAGATTACA 59.820 37.037 4.95 0.00 32.93 2.41
2016 3822 7.556844 TCCTGGTTTCTATGAGAACAGATTAC 58.443 38.462 4.95 0.00 32.93 1.89
2018 3824 6.627087 TCCTGGTTTCTATGAGAACAGATT 57.373 37.500 4.95 0.00 32.93 2.40
2019 3825 5.396213 GCTCCTGGTTTCTATGAGAACAGAT 60.396 44.000 4.95 0.00 32.93 2.90
2023 3829 4.207891 TGCTCCTGGTTTCTATGAGAAC 57.792 45.455 0.00 0.00 33.26 3.01
2040 3846 0.926846 GCTAGACGATGCTGTTGCTC 59.073 55.000 0.00 0.00 40.48 4.26
2049 3855 3.300857 CGTCATAGTTGGCTAGACGATG 58.699 50.000 7.42 0.00 43.33 3.84
2056 3862 1.739035 GCTGTGCGTCATAGTTGGCTA 60.739 52.381 5.74 0.00 0.00 3.93
2058 3864 1.298157 TGCTGTGCGTCATAGTTGGC 61.298 55.000 5.74 0.00 0.00 4.52
2059 3865 1.155889 TTGCTGTGCGTCATAGTTGG 58.844 50.000 5.74 0.00 0.00 3.77
2060 3866 2.674852 AGATTGCTGTGCGTCATAGTTG 59.325 45.455 5.74 0.00 0.00 3.16
2061 3867 2.977914 AGATTGCTGTGCGTCATAGTT 58.022 42.857 5.74 0.00 0.00 2.24
2063 3869 5.663795 AATTAGATTGCTGTGCGTCATAG 57.336 39.130 0.50 0.50 0.00 2.23
2065 3871 5.586243 ACTTAATTAGATTGCTGTGCGTCAT 59.414 36.000 0.00 0.00 0.00 3.06
2066 3872 4.935205 ACTTAATTAGATTGCTGTGCGTCA 59.065 37.500 0.00 0.00 0.00 4.35
2067 3873 5.470845 ACTTAATTAGATTGCTGTGCGTC 57.529 39.130 0.00 0.00 0.00 5.19
2091 3899 7.444487 ACACCTAACAGGAAGTTCATAAAGAAC 59.556 37.037 5.01 0.00 46.80 3.01
2092 3900 7.514721 ACACCTAACAGGAAGTTCATAAAGAA 58.485 34.615 5.01 0.00 41.64 2.52
2093 3901 7.074653 ACACCTAACAGGAAGTTCATAAAGA 57.925 36.000 5.01 0.00 41.64 2.52
2102 3910 4.409247 ACTGAGAAACACCTAACAGGAAGT 59.591 41.667 0.00 0.00 37.67 3.01
2108 3916 3.181458 GGACCACTGAGAAACACCTAACA 60.181 47.826 0.00 0.00 0.00 2.41
2110 3918 2.036733 CGGACCACTGAGAAACACCTAA 59.963 50.000 0.00 0.00 0.00 2.69
2121 3929 7.613585 TGTTCTAATAATTAACGGACCACTGA 58.386 34.615 0.00 0.00 0.00 3.41
2123 3931 6.537660 GCTGTTCTAATAATTAACGGACCACT 59.462 38.462 1.78 0.00 32.35 4.00
2134 3942 9.177608 TCAATACTTGCTGCTGTTCTAATAATT 57.822 29.630 0.00 0.00 0.00 1.40
2135 3943 8.737168 TCAATACTTGCTGCTGTTCTAATAAT 57.263 30.769 0.00 0.00 0.00 1.28
2136 3944 8.560355 TTCAATACTTGCTGCTGTTCTAATAA 57.440 30.769 0.00 0.00 0.00 1.40
2137 3945 7.824289 ACTTCAATACTTGCTGCTGTTCTAATA 59.176 33.333 0.00 0.00 0.00 0.98
2138 3946 6.656693 ACTTCAATACTTGCTGCTGTTCTAAT 59.343 34.615 0.00 0.00 0.00 1.73
2150 3958 5.438761 AACTTGTGGACTTCAATACTTGC 57.561 39.130 0.00 0.00 0.00 4.01
2155 3963 4.213270 CGCTGAAACTTGTGGACTTCAATA 59.787 41.667 0.00 0.00 0.00 1.90
2156 3964 3.003689 CGCTGAAACTTGTGGACTTCAAT 59.996 43.478 0.00 0.00 0.00 2.57
2159 3967 2.032808 GTCGCTGAAACTTGTGGACTTC 60.033 50.000 0.00 0.00 0.00 3.01
2195 4003 0.875908 CAGGTCGTGTGTGGTGACTG 60.876 60.000 0.00 0.00 33.21 3.51
2202 4010 0.300491 CGTTTGTCAGGTCGTGTGTG 59.700 55.000 0.00 0.00 0.00 3.82
2218 4031 3.057337 CCAACCTCGGGAGTCGTT 58.943 61.111 0.00 0.00 40.32 3.85
2245 4058 0.745128 CTCTCTCCAGCTACCGTCGT 60.745 60.000 0.00 0.00 0.00 4.34
2259 4072 2.756283 CGAACGAGGGCCCTCTCT 60.756 66.667 41.86 30.98 40.69 3.10
2286 4099 1.612950 CCACTGAGCTGAGCTATCGAT 59.387 52.381 7.08 2.16 39.88 3.59
2300 4113 1.456892 AGTCACCGGTCACCACTGA 60.457 57.895 4.41 0.00 0.00 3.41
2321 4134 3.014036 CGATCAATTCCACGCGGG 58.986 61.111 12.47 6.05 38.37 6.13
2418 4259 1.228706 TTCCCAAATTGGCCGCAGA 60.229 52.632 6.48 0.00 35.79 4.26
2434 4275 2.291465 GGTACCAACCGAACCAAACTTC 59.709 50.000 7.15 0.00 35.62 3.01
2453 4294 1.765597 AAAACTTCGAGGAGGCCGGT 61.766 55.000 1.90 0.00 0.00 5.28
2476 4317 3.782250 GCGATGTTTCTGTATGAACGCAG 60.782 47.826 0.00 0.00 42.29 5.18
2477 4318 2.093625 GCGATGTTTCTGTATGAACGCA 59.906 45.455 0.00 0.00 42.29 5.24
2488 4329 3.788766 GGCGCACGCGATGTTTCT 61.789 61.111 15.93 0.00 43.06 2.52
2489 4330 3.982424 CTGGCGCACGCGATGTTTC 62.982 63.158 15.93 0.00 43.06 2.78
2490 4331 4.088762 CTGGCGCACGCGATGTTT 62.089 61.111 15.93 0.00 43.06 2.83
2491 4332 3.925362 TACTGGCGCACGCGATGTT 62.925 57.895 15.93 0.00 43.06 2.71
2506 4352 2.036475 CTGACAGGCGCCATCTATTACT 59.964 50.000 31.54 0.00 0.00 2.24
2512 4358 1.257750 TACACTGACAGGCGCCATCT 61.258 55.000 31.54 10.14 0.00 2.90
2513 4359 0.807667 CTACACTGACAGGCGCCATC 60.808 60.000 31.54 25.33 0.00 3.51
2514 4360 1.219124 CTACACTGACAGGCGCCAT 59.781 57.895 31.54 17.31 0.00 4.40
2521 4367 4.517832 TGTACAGTACCACTACACTGACAG 59.482 45.833 8.30 0.00 43.99 3.51
2526 4372 6.415206 ACAATTGTACAGTACCACTACACT 57.585 37.500 9.97 0.00 0.00 3.55
2541 4387 4.461081 GTCATTGCCCAAGGTACAATTGTA 59.539 41.667 14.35 14.35 31.82 2.41
2544 4390 2.831526 GGTCATTGCCCAAGGTACAATT 59.168 45.455 0.00 0.00 31.82 2.32
2545 4391 2.225242 TGGTCATTGCCCAAGGTACAAT 60.225 45.455 0.00 0.26 34.42 2.71
2560 4417 2.037121 TCGTCTGTTGATGTGTGGTCAT 59.963 45.455 0.00 0.00 0.00 3.06
2568 4425 0.671796 TGTCCGTCGTCTGTTGATGT 59.328 50.000 0.00 0.00 0.00 3.06
2606 4463 0.942962 CGTCCTACTGTAGTAGCCCG 59.057 60.000 13.42 11.91 44.97 6.13
2633 4499 1.077501 TGATAGCTGGCTGCAACCC 60.078 57.895 18.84 0.00 45.94 4.11
2641 4507 3.134458 ACTTATTTCGCTGATAGCTGGC 58.866 45.455 0.00 0.00 39.60 4.85
2644 4510 5.123820 TGCAAAACTTATTTCGCTGATAGCT 59.876 36.000 0.00 0.00 39.60 3.32
2648 4514 5.772521 AGTTGCAAAACTTATTTCGCTGAT 58.227 33.333 0.00 0.00 0.00 2.90
2652 4518 7.537306 TGATAGAAGTTGCAAAACTTATTTCGC 59.463 33.333 0.00 0.00 42.57 4.70
2674 4540 9.925545 CTCCCCCATATATGATTTTGAATGATA 57.074 33.333 14.54 0.00 0.00 2.15
2678 4544 7.768643 TGTCTCCCCCATATATGATTTTGAAT 58.231 34.615 14.54 0.00 0.00 2.57
2680 4546 6.778542 TGTCTCCCCCATATATGATTTTGA 57.221 37.500 14.54 4.32 0.00 2.69
2689 4555 4.367166 TCTGTTGTTGTCTCCCCCATATA 58.633 43.478 0.00 0.00 0.00 0.86
2690 4556 3.189606 TCTGTTGTTGTCTCCCCCATAT 58.810 45.455 0.00 0.00 0.00 1.78
2691 4557 2.626785 TCTGTTGTTGTCTCCCCCATA 58.373 47.619 0.00 0.00 0.00 2.74
2692 4558 1.444933 TCTGTTGTTGTCTCCCCCAT 58.555 50.000 0.00 0.00 0.00 4.00
2693 4559 1.142870 CTTCTGTTGTTGTCTCCCCCA 59.857 52.381 0.00 0.00 0.00 4.96
2694 4560 1.897560 CTTCTGTTGTTGTCTCCCCC 58.102 55.000 0.00 0.00 0.00 5.40
2695 4561 1.202818 AGCTTCTGTTGTTGTCTCCCC 60.203 52.381 0.00 0.00 0.00 4.81
2696 4562 2.262423 AGCTTCTGTTGTTGTCTCCC 57.738 50.000 0.00 0.00 0.00 4.30
2697 4563 5.241662 AGATTAGCTTCTGTTGTTGTCTCC 58.758 41.667 0.00 0.00 0.00 3.71
2698 4564 6.793492 AAGATTAGCTTCTGTTGTTGTCTC 57.207 37.500 0.00 0.00 28.17 3.36
2699 4565 7.671302 TCTAAGATTAGCTTCTGTTGTTGTCT 58.329 34.615 0.00 0.00 38.05 3.41
2700 4566 7.412455 GCTCTAAGATTAGCTTCTGTTGTTGTC 60.412 40.741 0.00 0.00 38.05 3.18
2701 4567 6.370166 GCTCTAAGATTAGCTTCTGTTGTTGT 59.630 38.462 0.00 0.00 38.05 3.32
2702 4568 6.369890 TGCTCTAAGATTAGCTTCTGTTGTTG 59.630 38.462 0.00 0.00 39.53 3.33
2703 4569 6.467677 TGCTCTAAGATTAGCTTCTGTTGTT 58.532 36.000 0.00 0.00 39.53 2.83
2704 4570 6.042638 TGCTCTAAGATTAGCTTCTGTTGT 57.957 37.500 0.00 0.00 39.53 3.32
2705 4571 6.593382 AGTTGCTCTAAGATTAGCTTCTGTTG 59.407 38.462 0.00 0.00 39.53 3.33
2706 4572 6.706295 AGTTGCTCTAAGATTAGCTTCTGTT 58.294 36.000 0.00 0.00 39.53 3.16
2707 4573 6.293004 AGTTGCTCTAAGATTAGCTTCTGT 57.707 37.500 0.00 0.00 39.53 3.41
2708 4574 6.815641 TGAAGTTGCTCTAAGATTAGCTTCTG 59.184 38.462 0.00 0.00 39.53 3.02
2709 4575 6.940739 TGAAGTTGCTCTAAGATTAGCTTCT 58.059 36.000 0.00 0.00 39.53 2.85
2710 4576 7.602517 TTGAAGTTGCTCTAAGATTAGCTTC 57.397 36.000 0.00 8.67 39.53 3.86
2711 4577 7.066766 CCATTGAAGTTGCTCTAAGATTAGCTT 59.933 37.037 0.00 0.00 39.53 3.74
2712 4578 6.541641 CCATTGAAGTTGCTCTAAGATTAGCT 59.458 38.462 0.00 0.00 39.53 3.32
2713 4579 6.238593 CCCATTGAAGTTGCTCTAAGATTAGC 60.239 42.308 0.00 0.00 39.25 3.09
2714 4580 6.261826 CCCCATTGAAGTTGCTCTAAGATTAG 59.738 42.308 0.00 0.00 0.00 1.73
2715 4581 6.122277 CCCCATTGAAGTTGCTCTAAGATTA 58.878 40.000 0.00 0.00 0.00 1.75
2716 4582 4.952335 CCCCATTGAAGTTGCTCTAAGATT 59.048 41.667 0.00 0.00 0.00 2.40
2717 4583 4.530875 CCCCATTGAAGTTGCTCTAAGAT 58.469 43.478 0.00 0.00 0.00 2.40
2718 4584 3.873801 GCCCCATTGAAGTTGCTCTAAGA 60.874 47.826 0.00 0.00 0.00 2.10
2719 4585 2.424956 GCCCCATTGAAGTTGCTCTAAG 59.575 50.000 0.00 0.00 0.00 2.18
2720 4586 2.446435 GCCCCATTGAAGTTGCTCTAA 58.554 47.619 0.00 0.00 0.00 2.10
2721 4587 1.678728 CGCCCCATTGAAGTTGCTCTA 60.679 52.381 0.00 0.00 0.00 2.43
2722 4588 0.962356 CGCCCCATTGAAGTTGCTCT 60.962 55.000 0.00 0.00 0.00 4.09
2723 4589 0.960364 TCGCCCCATTGAAGTTGCTC 60.960 55.000 0.00 0.00 0.00 4.26
2724 4590 0.323725 ATCGCCCCATTGAAGTTGCT 60.324 50.000 0.00 0.00 0.00 3.91
2725 4591 0.101219 GATCGCCCCATTGAAGTTGC 59.899 55.000 0.00 0.00 0.00 4.17
2726 4592 0.740737 GGATCGCCCCATTGAAGTTG 59.259 55.000 0.00 0.00 0.00 3.16
2727 4593 0.331278 TGGATCGCCCCATTGAAGTT 59.669 50.000 0.00 0.00 0.00 2.66
2728 4594 0.552848 ATGGATCGCCCCATTGAAGT 59.447 50.000 3.02 0.00 44.11 3.01
2729 4595 2.154462 GTATGGATCGCCCCATTGAAG 58.846 52.381 12.51 0.00 44.11 3.02
2730 4596 1.202879 GGTATGGATCGCCCCATTGAA 60.203 52.381 12.51 0.00 44.11 2.69
2731 4597 0.400213 GGTATGGATCGCCCCATTGA 59.600 55.000 12.51 0.00 44.11 2.57
2732 4598 0.955428 CGGTATGGATCGCCCCATTG 60.955 60.000 12.51 2.31 44.11 2.82
2733 4599 1.374947 CGGTATGGATCGCCCCATT 59.625 57.895 12.51 0.31 44.11 3.16
2735 4601 2.445085 ACGGTATGGATCGCCCCA 60.445 61.111 0.00 0.00 41.05 4.96
2736 4602 2.342648 GACGGTATGGATCGCCCC 59.657 66.667 0.00 0.00 0.00 5.80
2737 4603 2.342648 GGACGGTATGGATCGCCC 59.657 66.667 0.00 0.00 0.00 6.13
2738 4604 2.049433 CGGACGGTATGGATCGCC 60.049 66.667 0.00 0.00 0.00 5.54
2739 4605 2.733593 GCGGACGGTATGGATCGC 60.734 66.667 0.00 0.00 36.51 4.58
2740 4606 2.049433 GGCGGACGGTATGGATCG 60.049 66.667 0.00 0.00 0.00 3.69
2741 4607 2.342648 GGGCGGACGGTATGGATC 59.657 66.667 0.00 0.00 0.00 3.36
2742 4608 3.612681 CGGGCGGACGGTATGGAT 61.613 66.667 0.00 0.00 0.00 3.41
2764 4630 1.666872 GTCCACTCCGACCCAAACG 60.667 63.158 0.00 0.00 0.00 3.60
2765 4631 0.179040 TTGTCCACTCCGACCCAAAC 60.179 55.000 0.00 0.00 31.35 2.93
2766 4632 0.547075 TTTGTCCACTCCGACCCAAA 59.453 50.000 0.00 0.00 31.35 3.28
2767 4633 0.547075 TTTTGTCCACTCCGACCCAA 59.453 50.000 0.00 0.00 31.35 4.12
2768 4634 0.107831 CTTTTGTCCACTCCGACCCA 59.892 55.000 0.00 0.00 31.35 4.51
2769 4635 0.108019 ACTTTTGTCCACTCCGACCC 59.892 55.000 0.00 0.00 31.35 4.46
2770 4636 1.226746 CACTTTTGTCCACTCCGACC 58.773 55.000 0.00 0.00 31.35 4.79
2771 4637 1.226746 CCACTTTTGTCCACTCCGAC 58.773 55.000 0.00 0.00 0.00 4.79
2772 4638 0.534203 GCCACTTTTGTCCACTCCGA 60.534 55.000 0.00 0.00 0.00 4.55
2773 4639 1.841663 CGCCACTTTTGTCCACTCCG 61.842 60.000 0.00 0.00 0.00 4.63
2774 4640 1.515521 CCGCCACTTTTGTCCACTCC 61.516 60.000 0.00 0.00 0.00 3.85
2775 4641 1.949257 CCGCCACTTTTGTCCACTC 59.051 57.895 0.00 0.00 0.00 3.51
2776 4642 2.193536 GCCGCCACTTTTGTCCACT 61.194 57.895 0.00 0.00 0.00 4.00
2777 4643 2.335011 GCCGCCACTTTTGTCCAC 59.665 61.111 0.00 0.00 0.00 4.02
2778 4644 2.909965 GGCCGCCACTTTTGTCCA 60.910 61.111 3.91 0.00 0.00 4.02
2779 4645 3.680786 GGGCCGCCACTTTTGTCC 61.681 66.667 12.58 0.00 0.00 4.02
2780 4646 2.494530 TTGGGCCGCCACTTTTGTC 61.495 57.895 12.58 0.00 0.00 3.18
2781 4647 2.443016 TTGGGCCGCCACTTTTGT 60.443 55.556 12.58 0.00 0.00 2.83
2782 4648 2.028925 GTTGGGCCGCCACTTTTG 59.971 61.111 12.58 0.00 0.00 2.44
2783 4649 2.443016 TGTTGGGCCGCCACTTTT 60.443 55.556 12.58 0.00 0.00 2.27
2784 4650 3.223589 GTGTTGGGCCGCCACTTT 61.224 61.111 12.58 0.00 0.00 2.66
2794 4660 4.939368 TTGGGTCGGCGTGTTGGG 62.939 66.667 6.85 0.00 0.00 4.12
2795 4661 2.902846 TTTGGGTCGGCGTGTTGG 60.903 61.111 6.85 0.00 0.00 3.77
2796 4662 2.330041 GTTTGGGTCGGCGTGTTG 59.670 61.111 6.85 0.00 0.00 3.33
2797 4663 2.903350 GGTTTGGGTCGGCGTGTT 60.903 61.111 6.85 0.00 0.00 3.32
2798 4664 4.941309 GGGTTTGGGTCGGCGTGT 62.941 66.667 6.85 0.00 0.00 4.49
2799 4665 4.939368 TGGGTTTGGGTCGGCGTG 62.939 66.667 6.85 0.00 0.00 5.34
2800 4666 2.987355 AAATGGGTTTGGGTCGGCGT 62.987 55.000 6.85 0.00 0.00 5.68
2801 4667 2.207788 GAAATGGGTTTGGGTCGGCG 62.208 60.000 0.00 0.00 0.00 6.46
2802 4668 1.182385 TGAAATGGGTTTGGGTCGGC 61.182 55.000 0.00 0.00 0.00 5.54
2803 4669 0.601057 GTGAAATGGGTTTGGGTCGG 59.399 55.000 0.00 0.00 0.00 4.79
2804 4670 0.239879 CGTGAAATGGGTTTGGGTCG 59.760 55.000 0.00 0.00 0.00 4.79
2805 4671 1.268625 GACGTGAAATGGGTTTGGGTC 59.731 52.381 0.00 0.00 0.00 4.46
2806 4672 1.324383 GACGTGAAATGGGTTTGGGT 58.676 50.000 0.00 0.00 0.00 4.51
2807 4673 0.601057 GGACGTGAAATGGGTTTGGG 59.399 55.000 0.00 0.00 0.00 4.12
2808 4674 0.239879 CGGACGTGAAATGGGTTTGG 59.760 55.000 0.00 0.00 0.00 3.28
2809 4675 0.386731 GCGGACGTGAAATGGGTTTG 60.387 55.000 0.00 0.00 0.00 2.93
2810 4676 1.847890 CGCGGACGTGAAATGGGTTT 61.848 55.000 0.00 0.00 33.53 3.27
2811 4677 2.322081 CGCGGACGTGAAATGGGTT 61.322 57.895 0.00 0.00 33.53 4.11
2812 4678 2.740826 CGCGGACGTGAAATGGGT 60.741 61.111 0.00 0.00 33.53 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.