Multiple sequence alignment - TraesCS3B01G294800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G294800 chr3B 100.000 2291 0 0 1 2291 473690569 473692859 0.000000e+00 4231
1 TraesCS3B01G294800 chr3A 91.520 1651 105 21 663 2291 484633784 484635421 0.000000e+00 2241
2 TraesCS3B01G294800 chr3A 92.483 439 23 3 1 430 484633126 484633563 8.990000e-174 619
3 TraesCS3B01G294800 chr3A 85.263 190 5 9 442 628 484633617 484633786 8.410000e-40 174
4 TraesCS3B01G294800 chr3D 90.107 839 65 11 1456 2291 363594310 363595133 0.000000e+00 1074
5 TraesCS3B01G294800 chr3D 89.921 635 36 11 756 1379 363593460 363594077 0.000000e+00 793
6 TraesCS3B01G294800 chr3D 92.429 317 14 3 87 393 363592959 363593275 5.810000e-121 444
7 TraesCS3B01G294800 chr3D 92.500 80 6 0 1377 1456 363594125 363594204 5.170000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G294800 chr3B 473690569 473692859 2290 False 4231.000000 4231 100.000000 1 2291 1 chr3B.!!$F1 2290
1 TraesCS3B01G294800 chr3A 484633126 484635421 2295 False 1011.333333 2241 89.755333 1 2291 3 chr3A.!!$F1 2290
2 TraesCS3B01G294800 chr3D 363592959 363595133 2174 False 606.500000 1074 91.239250 87 2291 4 chr3D.!!$F1 2204

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 0.165944 CTTCACGCGTTTGGGATGTC 59.834 55.0 10.22 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1663 1904 0.107654 TCGTCGAGATGCTGGAGAGA 60.108 55.0 0.0 0.0 0.0 3.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.186125 GGCGTACCTTTCCCTCCG 59.814 66.667 0.00 0.00 0.00 4.63
65 66 1.234821 TCGATTTGTGCCTGTGGAAC 58.765 50.000 0.00 0.00 37.35 3.62
72 73 4.329545 GCCTGTGGAACGGCCTCA 62.330 66.667 0.00 0.00 46.07 3.86
73 74 2.358737 CCTGTGGAACGGCCTCAC 60.359 66.667 0.00 4.83 43.57 3.51
80 81 3.836176 GAACGGCCTCACGACGTGT 62.836 63.158 26.01 6.30 41.12 4.49
120 121 1.153588 GGAAAATGTGGCGGCATGG 60.154 57.895 17.19 0.00 0.00 3.66
140 141 0.165944 CTTCACGCGTTTGGGATGTC 59.834 55.000 10.22 0.00 0.00 3.06
173 183 7.634671 TGATTTGTTATGTCTGATCTTGCAT 57.365 32.000 0.00 0.00 0.00 3.96
412 423 1.209261 TGCCGGAACTGCATCTTGATA 59.791 47.619 5.05 0.00 45.22 2.15
413 424 2.158769 TGCCGGAACTGCATCTTGATAT 60.159 45.455 5.05 0.00 45.22 1.63
419 430 5.050499 CGGAACTGCATCTTGATATTCTGTC 60.050 44.000 0.00 0.00 0.00 3.51
430 441 8.797350 TCTTGATATTCTGTCAACATCAATGT 57.203 30.769 0.00 0.00 44.20 2.71
432 443 8.564509 TTGATATTCTGTCAACATCAATGTGA 57.435 30.769 0.00 0.00 41.61 3.58
433 444 8.564509 TGATATTCTGTCAACATCAATGTGAA 57.435 30.769 0.00 0.00 41.61 3.18
434 445 8.453320 TGATATTCTGTCAACATCAATGTGAAC 58.547 33.333 0.00 0.00 41.61 3.18
435 446 6.889301 ATTCTGTCAACATCAATGTGAACT 57.111 33.333 0.00 0.00 41.61 3.01
436 447 5.929697 TCTGTCAACATCAATGTGAACTC 57.070 39.130 0.00 0.00 41.61 3.01
438 449 3.058983 TGTCAACATCAATGTGAACTCGC 60.059 43.478 0.00 0.00 41.61 5.03
439 450 2.157474 TCAACATCAATGTGAACTCGCG 59.843 45.455 0.00 0.00 41.61 5.87
440 451 2.078849 ACATCAATGTGAACTCGCGA 57.921 45.000 9.26 9.26 40.03 5.87
522 576 4.031878 CGTCTTTCTTACTCCGCATTTCTC 59.968 45.833 0.00 0.00 0.00 2.87
527 581 0.892755 TACTCCGCATTTCTCACGGT 59.107 50.000 0.00 0.00 46.92 4.83
532 586 1.421485 GCATTTCTCACGGTGCTCG 59.579 57.895 2.51 0.00 45.88 5.03
610 664 0.237235 TTTCGCCATTGCTCAACGTC 59.763 50.000 0.00 0.00 34.43 4.34
630 684 3.564225 GTCGGAAAATCTGTTCAACACCT 59.436 43.478 0.00 0.00 0.00 4.00
633 687 4.610945 GGAAAATCTGTTCAACACCTGTG 58.389 43.478 0.00 0.00 0.00 3.66
644 698 2.543777 ACACCTGTGTTATCAACGCT 57.456 45.000 0.00 0.00 41.83 5.07
645 699 2.846193 ACACCTGTGTTATCAACGCTT 58.154 42.857 0.00 0.00 41.83 4.68
709 767 2.356135 CGGTCACCCCACTTCAATTAG 58.644 52.381 0.00 0.00 0.00 1.73
751 809 3.059352 ACCTTGGACATGTCTTGCTAC 57.941 47.619 24.50 8.09 0.00 3.58
868 927 1.598601 CCGTGCAATGCAAAAGCTTTT 59.401 42.857 18.74 18.74 41.47 2.27
869 928 2.799412 CCGTGCAATGCAAAAGCTTTTA 59.201 40.909 23.44 10.37 41.47 1.52
871 930 3.490526 CGTGCAATGCAAAAGCTTTTAGT 59.509 39.130 23.44 6.48 41.47 2.24
882 941 7.976734 TGCAAAAGCTTTTAGTAAGTTTTAGCA 59.023 29.630 23.44 19.35 31.85 3.49
887 946 5.564127 GCTTTTAGTAAGTTTTAGCAGCACG 59.436 40.000 0.00 0.00 0.00 5.34
976 1035 1.610522 CTCTTGTGCTCCCAAAACCAG 59.389 52.381 0.00 0.00 0.00 4.00
1033 1102 1.292223 GTGCTGTTCCTCGTAGCCA 59.708 57.895 0.00 0.00 36.64 4.75
1039 1108 0.872021 GTTCCTCGTAGCCATGCTCG 60.872 60.000 0.00 0.00 40.44 5.03
1207 1276 4.673298 TGTGCACGTACGCCAGGG 62.673 66.667 16.72 1.06 0.00 4.45
1241 1310 3.378427 GGCAAATACATCAACTCCCAGAC 59.622 47.826 0.00 0.00 0.00 3.51
1440 1565 1.983605 CGTGTGGTGATCGTGTCTTAC 59.016 52.381 0.00 0.00 0.00 2.34
1464 1700 8.195617 ACTGTTTGTTTGTTTTCAACATATGG 57.804 30.769 7.80 0.00 41.79 2.74
1485 1721 5.559770 TGGTTGCAAGATCAAGTTATCTGA 58.440 37.500 0.00 0.00 36.34 3.27
1490 1726 5.640783 TGCAAGATCAAGTTATCTGACACTG 59.359 40.000 0.00 0.00 36.34 3.66
1495 1731 7.445121 AGATCAAGTTATCTGACACTGAAACA 58.555 34.615 0.00 0.00 34.87 2.83
1504 1740 6.174720 TCTGACACTGAAACAAGTCCTATT 57.825 37.500 0.00 0.00 0.00 1.73
1512 1749 6.483640 ACTGAAACAAGTCCTATTCTGACAAC 59.516 38.462 0.00 0.00 35.15 3.32
1519 1756 5.230942 AGTCCTATTCTGACAACAACGAAG 58.769 41.667 0.00 0.00 35.15 3.79
1520 1757 3.994392 TCCTATTCTGACAACAACGAAGC 59.006 43.478 0.00 0.00 0.00 3.86
1524 1761 2.272678 TCTGACAACAACGAAGCGAAA 58.727 42.857 0.00 0.00 0.00 3.46
1547 1785 3.015327 GCTCATGTGCTCTCCTGAAATT 58.985 45.455 12.42 0.00 0.00 1.82
1548 1786 3.442977 GCTCATGTGCTCTCCTGAAATTT 59.557 43.478 12.42 0.00 0.00 1.82
1550 1788 5.298777 GCTCATGTGCTCTCCTGAAATTTAT 59.701 40.000 12.42 0.00 0.00 1.40
1551 1789 6.183360 GCTCATGTGCTCTCCTGAAATTTATT 60.183 38.462 12.42 0.00 0.00 1.40
1556 1794 6.092122 TGTGCTCTCCTGAAATTTATTACACG 59.908 38.462 0.00 0.00 0.00 4.49
1560 1798 7.148474 GCTCTCCTGAAATTTATTACACGACAA 60.148 37.037 0.00 0.00 0.00 3.18
1575 1813 2.030805 ACGACAAAAATCCAGAAGCAGC 60.031 45.455 0.00 0.00 0.00 5.25
1576 1814 2.669391 CGACAAAAATCCAGAAGCAGCC 60.669 50.000 0.00 0.00 0.00 4.85
1580 1818 1.310933 AAATCCAGAAGCAGCCGCAG 61.311 55.000 0.00 0.00 42.27 5.18
1582 1820 2.866085 ATCCAGAAGCAGCCGCAGTC 62.866 60.000 0.00 0.00 42.27 3.51
1592 1830 2.046892 CCGCAGTCCCCTGAACAG 60.047 66.667 0.00 0.00 41.50 3.16
1593 1831 2.743928 CGCAGTCCCCTGAACAGC 60.744 66.667 0.00 0.00 41.50 4.40
1594 1832 2.431683 GCAGTCCCCTGAACAGCA 59.568 61.111 0.00 0.00 41.50 4.41
1597 1835 1.915141 CAGTCCCCTGAACAGCATTT 58.085 50.000 0.00 0.00 41.50 2.32
1598 1836 2.879756 GCAGTCCCCTGAACAGCATTTA 60.880 50.000 0.00 0.00 41.50 1.40
1599 1837 2.749621 CAGTCCCCTGAACAGCATTTAC 59.250 50.000 0.00 0.00 41.50 2.01
1600 1838 2.375174 AGTCCCCTGAACAGCATTTACA 59.625 45.455 0.00 0.00 0.00 2.41
1601 1839 3.153919 GTCCCCTGAACAGCATTTACAA 58.846 45.455 0.00 0.00 0.00 2.41
1602 1840 3.191371 GTCCCCTGAACAGCATTTACAAG 59.809 47.826 0.00 0.00 0.00 3.16
1607 1845 5.334879 CCCTGAACAGCATTTACAAGTACAC 60.335 44.000 0.00 0.00 0.00 2.90
1609 1847 5.373222 TGAACAGCATTTACAAGTACACCT 58.627 37.500 0.00 0.00 0.00 4.00
1617 1855 7.883311 AGCATTTACAAGTACACCTATGTCTTT 59.117 33.333 0.00 0.00 40.48 2.52
1627 1868 5.488341 ACACCTATGTCTTTTACGCTTCAT 58.512 37.500 0.00 0.00 31.55 2.57
1639 1880 2.966050 ACGCTTCATGAGGTTCTTCTC 58.034 47.619 6.70 0.00 0.00 2.87
1685 1926 0.248417 CTCCAGCATCTCGACGACTG 60.248 60.000 6.29 6.29 0.00 3.51
1774 2015 3.288308 AAGCTCTCTGGTGTCGCCG 62.288 63.158 0.00 0.00 41.21 6.46
1976 2217 1.602888 ACCTCAGGTGCGTCGTAGT 60.603 57.895 0.00 0.00 32.98 2.73
1991 2232 2.772515 TCGTAGTCATCTCTCTCCCTCA 59.227 50.000 0.00 0.00 0.00 3.86
2023 2264 2.423538 AGATGTTTCGCATAGGTTTGCC 59.576 45.455 0.00 0.00 39.52 4.52
2044 2285 4.036027 GCCACACCAACATCAGATATCTTG 59.964 45.833 1.33 2.51 0.00 3.02
2094 2335 0.452987 CGGGGTTTGATGCTGATGTG 59.547 55.000 0.00 0.00 0.00 3.21
2131 2372 2.058001 ATCGCCGTGGAGATGGTCA 61.058 57.895 4.22 0.00 33.55 4.02
2200 2441 2.359214 CAGCCATAGCGAGTAGTTCTCA 59.641 50.000 0.00 0.00 46.67 3.27
2269 2510 3.509967 TGGGCATGTACTCGTATATCAGG 59.490 47.826 0.00 0.00 0.00 3.86
2280 2521 1.968493 GTATATCAGGGCCCTCGTTGA 59.032 52.381 25.77 18.62 0.00 3.18
2281 2522 1.507140 ATATCAGGGCCCTCGTTGAA 58.493 50.000 25.77 8.58 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.186125 GGAGGGAAAGGTACGCCG 59.814 66.667 0.00 0.00 40.50 6.46
16 17 1.993391 CTGGGCGGAGGGAAAGGTA 60.993 63.158 0.00 0.00 0.00 3.08
29 30 3.171388 ATCCACCGGATCCTGGGC 61.171 66.667 21.65 0.00 38.09 5.36
50 51 3.834726 CCGTTCCACAGGCACAAA 58.165 55.556 0.00 0.00 0.00 2.83
80 81 2.933287 AATCCTGACCACGGGCCA 60.933 61.111 4.39 0.00 42.00 5.36
83 84 1.746615 CAGCAATCCTGACCACGGG 60.747 63.158 0.00 0.00 44.64 5.28
120 121 1.154225 CATCCCAAACGCGTGAAGC 60.154 57.895 14.98 0.00 43.95 3.86
140 141 6.375174 TCAGACATAACAAATCAATCAGGTGG 59.625 38.462 0.00 0.00 0.00 4.61
173 183 5.433526 AGGTGCCTATAAAGACGCAATTTA 58.566 37.500 0.00 0.00 32.04 1.40
228 238 4.946157 AGCTATCCTTTCCTTGTCAACATG 59.054 41.667 0.00 0.00 0.00 3.21
272 282 3.214328 CGTTTATTCCCCTCCCTCAATG 58.786 50.000 0.00 0.00 0.00 2.82
316 327 4.750098 TCTGACGAAGAAAACATCTGGTTC 59.250 41.667 0.00 0.00 39.29 3.62
405 416 8.671028 CACATTGATGTTGACAGAATATCAAGA 58.329 33.333 10.87 0.00 39.77 3.02
412 423 6.347969 CGAGTTCACATTGATGTTGACAGAAT 60.348 38.462 0.00 0.00 39.39 2.40
413 424 5.050159 CGAGTTCACATTGATGTTGACAGAA 60.050 40.000 0.00 0.00 39.39 3.02
419 430 2.157474 TCGCGAGTTCACATTGATGTTG 59.843 45.455 3.71 0.00 39.39 3.33
430 441 1.371758 GAGTGCAGTCGCGAGTTCA 60.372 57.895 15.15 13.63 42.97 3.18
432 443 2.429236 CGAGTGCAGTCGCGAGTT 60.429 61.111 29.22 0.00 42.97 3.01
440 451 0.609406 TAGGAGACAGCGAGTGCAGT 60.609 55.000 0.00 0.00 44.28 4.40
541 595 1.234615 TAAGAAGCAACACGGCTGCC 61.235 55.000 9.11 9.11 45.07 4.85
542 596 0.166814 CTAAGAAGCAACACGGCTGC 59.833 55.000 0.00 0.00 45.07 5.25
555 609 2.045326 TCTGGGGTAAGGAGGCTAAGAA 59.955 50.000 0.00 0.00 0.00 2.52
570 624 1.339631 TGGCGATAGTTGTTTCTGGGG 60.340 52.381 0.00 0.00 39.35 4.96
571 625 2.107950 TGGCGATAGTTGTTTCTGGG 57.892 50.000 0.00 0.00 39.35 4.45
610 664 3.315191 ACAGGTGTTGAACAGATTTTCCG 59.685 43.478 0.00 0.00 0.00 4.30
639 693 5.178809 GTCTATAAACACTCAACCAAGCGTT 59.821 40.000 0.00 0.00 33.90 4.84
640 694 4.689345 GTCTATAAACACTCAACCAAGCGT 59.311 41.667 0.00 0.00 0.00 5.07
641 695 4.092968 GGTCTATAAACACTCAACCAAGCG 59.907 45.833 0.00 0.00 0.00 4.68
642 696 5.001232 TGGTCTATAAACACTCAACCAAGC 58.999 41.667 0.00 0.00 32.65 4.01
643 697 6.369065 GTCTGGTCTATAAACACTCAACCAAG 59.631 42.308 0.00 0.00 35.08 3.61
644 698 6.183361 TGTCTGGTCTATAAACACTCAACCAA 60.183 38.462 0.00 0.00 35.08 3.67
645 699 5.305902 TGTCTGGTCTATAAACACTCAACCA 59.694 40.000 0.00 0.00 34.36 3.67
659 717 4.525487 ACACCGATAAAAGTGTCTGGTCTA 59.475 41.667 0.00 0.00 43.62 2.59
709 767 1.069296 TGCTGTGCAGATTACGTTTGC 60.069 47.619 3.02 0.00 38.30 3.68
790 848 4.459089 GGGACTCCGGCACTGCTC 62.459 72.222 0.00 0.00 0.00 4.26
868 927 4.261578 ACCGTGCTGCTAAAACTTACTA 57.738 40.909 0.00 0.00 0.00 1.82
869 928 3.121738 ACCGTGCTGCTAAAACTTACT 57.878 42.857 0.00 0.00 0.00 2.24
871 930 2.809696 GGAACCGTGCTGCTAAAACTTA 59.190 45.455 0.00 0.00 0.00 2.24
882 941 0.461961 GCTCTATCTGGAACCGTGCT 59.538 55.000 0.00 0.00 0.00 4.40
887 946 1.875576 CGCCATGCTCTATCTGGAACC 60.876 57.143 0.00 0.00 31.38 3.62
921 980 5.799213 ACTATTTGTAGCAAGAGAACAGCT 58.201 37.500 0.00 0.00 42.14 4.24
976 1035 2.533266 TCTTTGCAGTGGACTCTGTC 57.467 50.000 3.68 0.00 37.70 3.51
1213 1282 4.523083 GAGTTGATGTATTTGCCCAGGTA 58.477 43.478 0.00 0.00 0.00 3.08
1464 1700 6.148480 AGTGTCAGATAACTTGATCTTGCAAC 59.852 38.462 0.00 0.00 33.75 4.17
1470 1706 7.445121 TGTTTCAGTGTCAGATAACTTGATCT 58.555 34.615 0.00 0.00 36.58 2.75
1473 1709 7.047891 ACTTGTTTCAGTGTCAGATAACTTGA 58.952 34.615 0.00 0.00 0.00 3.02
1485 1721 5.992217 GTCAGAATAGGACTTGTTTCAGTGT 59.008 40.000 0.00 0.00 32.54 3.55
1490 1726 6.861065 TGTTGTCAGAATAGGACTTGTTTC 57.139 37.500 0.00 0.00 36.26 2.78
1495 1731 5.209818 TCGTTGTTGTCAGAATAGGACTT 57.790 39.130 0.00 0.00 36.26 3.01
1504 1740 1.929230 TTCGCTTCGTTGTTGTCAGA 58.071 45.000 0.00 0.00 0.00 3.27
1519 1756 0.731417 AGAGCACATGAGCATTTCGC 59.269 50.000 17.61 0.00 42.91 4.70
1520 1757 1.329906 GGAGAGCACATGAGCATTTCG 59.670 52.381 17.61 0.00 36.85 3.46
1524 1761 1.201424 TCAGGAGAGCACATGAGCAT 58.799 50.000 17.61 5.25 36.85 3.79
1547 1785 7.041030 TGCTTCTGGATTTTTGTCGTGTAATAA 60.041 33.333 0.00 0.00 0.00 1.40
1548 1786 6.428465 TGCTTCTGGATTTTTGTCGTGTAATA 59.572 34.615 0.00 0.00 0.00 0.98
1550 1788 4.576873 TGCTTCTGGATTTTTGTCGTGTAA 59.423 37.500 0.00 0.00 0.00 2.41
1551 1789 4.130857 TGCTTCTGGATTTTTGTCGTGTA 58.869 39.130 0.00 0.00 0.00 2.90
1556 1794 2.669391 CGGCTGCTTCTGGATTTTTGTC 60.669 50.000 0.00 0.00 0.00 3.18
1560 1798 0.895100 TGCGGCTGCTTCTGGATTTT 60.895 50.000 20.27 0.00 43.34 1.82
1580 1818 2.790433 TGTAAATGCTGTTCAGGGGAC 58.210 47.619 1.97 0.00 0.00 4.46
1582 1820 3.157087 ACTTGTAAATGCTGTTCAGGGG 58.843 45.455 1.97 0.00 0.00 4.79
1592 1830 7.611213 AAGACATAGGTGTACTTGTAAATGC 57.389 36.000 0.00 0.00 39.09 3.56
1597 1835 6.808212 GCGTAAAAGACATAGGTGTACTTGTA 59.192 38.462 0.00 0.00 39.09 2.41
1598 1836 5.636543 GCGTAAAAGACATAGGTGTACTTGT 59.363 40.000 0.00 0.00 39.09 3.16
1599 1837 5.867716 AGCGTAAAAGACATAGGTGTACTTG 59.132 40.000 0.00 0.00 39.09 3.16
1600 1838 6.034161 AGCGTAAAAGACATAGGTGTACTT 57.966 37.500 0.00 0.00 39.09 2.24
1601 1839 5.656213 AGCGTAAAAGACATAGGTGTACT 57.344 39.130 0.00 0.00 39.09 2.73
1602 1840 5.865552 TGAAGCGTAAAAGACATAGGTGTAC 59.134 40.000 0.00 0.00 39.09 2.90
1607 1845 5.235186 CCTCATGAAGCGTAAAAGACATAGG 59.765 44.000 0.00 0.00 0.00 2.57
1609 1847 5.730550 ACCTCATGAAGCGTAAAAGACATA 58.269 37.500 0.00 0.00 0.00 2.29
1617 1855 4.495422 GAGAAGAACCTCATGAAGCGTAA 58.505 43.478 0.00 0.00 33.50 3.18
1627 1868 2.615493 GGAATTGCCGAGAAGAACCTCA 60.615 50.000 0.00 0.00 32.86 3.86
1663 1904 0.107654 TCGTCGAGATGCTGGAGAGA 60.108 55.000 0.00 0.00 0.00 3.10
1665 1906 0.393132 AGTCGTCGAGATGCTGGAGA 60.393 55.000 0.00 0.00 0.00 3.71
1720 1961 4.008933 GTCGGGCTGTGGTGCTCT 62.009 66.667 0.00 0.00 0.00 4.09
1789 2030 1.467734 CTGGATGAGTTCTGCAACAGC 59.532 52.381 0.00 0.00 34.60 4.40
1976 2217 1.359130 TGGTGTGAGGGAGAGAGATGA 59.641 52.381 0.00 0.00 0.00 2.92
1991 2232 2.925306 GCGAAACATCTACTCGTGGTGT 60.925 50.000 0.00 0.00 35.06 4.16
2023 2264 4.577693 CCCAAGATATCTGATGTTGGTGTG 59.422 45.833 15.95 3.91 36.68 3.82
2044 2285 1.130054 TGGATCAGGAGCTATGCCCC 61.130 60.000 0.00 0.00 0.00 5.80
2109 2350 1.735973 CATCTCCACGGCGATGAGA 59.264 57.895 26.07 26.07 39.04 3.27
2110 2351 1.300465 CCATCTCCACGGCGATGAG 60.300 63.158 16.62 18.35 39.04 2.90
2127 2368 4.373116 TGGCGCGAGGTCTTGACC 62.373 66.667 12.10 11.59 0.00 4.02
2154 2395 2.367241 TGGGAGAAACTGTTCGACATCA 59.633 45.455 0.00 0.00 38.90 3.07
2269 2510 2.359975 CAGGGTTCAACGAGGGCC 60.360 66.667 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.