Multiple sequence alignment - TraesCS3B01G294700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G294700 chr3B 100.000 3293 0 0 1 3293 473691687 473688395 0.000000e+00 6082
1 TraesCS3B01G294700 chr3A 96.011 2632 72 11 690 3293 484633563 484630937 0.000000e+00 4248
2 TraesCS3B01G294700 chr3A 92.009 463 27 7 1 457 484634242 484633784 2.770000e-180 641
3 TraesCS3B01G294700 chr3A 85.263 190 5 9 492 678 484633786 484633617 1.210000e-39 174
4 TraesCS3B01G294700 chr3D 95.306 916 36 5 2382 3293 363592906 363591994 0.000000e+00 1447
5 TraesCS3B01G294700 chr3D 92.429 317 14 3 727 1033 363593275 363592959 8.380000e-121 444
6 TraesCS3B01G294700 chr3D 85.067 375 29 9 1 364 363593818 363593460 1.120000e-94 357


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G294700 chr3B 473688395 473691687 3292 True 6082.000000 6082 100.000000 1 3293 1 chr3B.!!$R1 3292
1 TraesCS3B01G294700 chr3A 484630937 484634242 3305 True 1687.666667 4248 91.094333 1 3293 3 chr3A.!!$R1 3292
2 TraesCS3B01G294700 chr3D 363591994 363593818 1824 True 749.333333 1447 90.934000 1 3293 3 chr3D.!!$R1 3292

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
576 592 0.166814 CTAAGAAGCAACACGGCTGC 59.833 55.0 0.0 0.0 45.07 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2395 2480 2.304761 TCGCTTATCTGGGACTTGGTTT 59.695 45.455 0.0 0.0 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 153 2.533266 TCTTTGCAGTGGACTCTGTC 57.467 50.000 3.68 0.00 37.70 3.51
197 208 5.799213 ACTATTTGTAGCAAGAGAACAGCT 58.201 37.500 0.00 0.00 42.14 4.24
231 242 1.875576 CGCCATGCTCTATCTGGAACC 60.876 57.143 0.00 0.00 31.38 3.62
236 247 0.461961 GCTCTATCTGGAACCGTGCT 59.538 55.000 0.00 0.00 0.00 4.40
247 258 2.809696 GGAACCGTGCTGCTAAAACTTA 59.190 45.455 0.00 0.00 0.00 2.24
248 259 3.364664 GGAACCGTGCTGCTAAAACTTAC 60.365 47.826 0.00 0.00 0.00 2.34
250 261 4.261578 ACCGTGCTGCTAAAACTTACTA 57.738 40.909 0.00 0.00 0.00 1.82
328 340 4.459089 GGGACTCCGGCACTGCTC 62.459 72.222 0.00 0.00 0.00 4.26
409 421 1.069296 TGCTGTGCAGATTACGTTTGC 60.069 47.619 3.02 0.00 38.30 3.68
459 471 4.525487 ACACCGATAAAAGTGTCTGGTCTA 59.475 41.667 0.00 0.00 43.62 2.59
473 485 5.305902 TGTCTGGTCTATAAACACTCAACCA 59.694 40.000 0.00 0.00 34.36 3.67
476 488 5.001232 TGGTCTATAAACACTCAACCAAGC 58.999 41.667 0.00 0.00 32.65 4.01
479 491 5.178809 GTCTATAAACACTCAACCAAGCGTT 59.821 40.000 0.00 0.00 33.90 4.84
508 524 3.315191 ACAGGTGTTGAACAGATTTTCCG 59.685 43.478 0.00 0.00 0.00 4.30
547 563 2.107950 TGGCGATAGTTGTTTCTGGG 57.892 50.000 0.00 0.00 39.35 4.45
548 564 1.339631 TGGCGATAGTTGTTTCTGGGG 60.340 52.381 0.00 0.00 39.35 4.96
563 579 2.045326 TCTGGGGTAAGGAGGCTAAGAA 59.955 50.000 0.00 0.00 0.00 2.52
576 592 0.166814 CTAAGAAGCAACACGGCTGC 59.833 55.000 0.00 0.00 45.07 5.25
577 593 1.234615 TAAGAAGCAACACGGCTGCC 61.235 55.000 9.11 9.11 45.07 4.85
678 695 0.609406 TAGGAGACAGCGAGTGCAGT 60.609 55.000 0.00 0.00 44.28 4.40
686 703 2.429236 CGAGTGCAGTCGCGAGTT 60.429 61.111 29.22 0.00 42.97 3.01
687 704 2.429351 CGAGTGCAGTCGCGAGTTC 61.429 63.158 29.22 10.61 42.97 3.01
688 705 1.371758 GAGTGCAGTCGCGAGTTCA 60.372 57.895 15.15 13.63 42.97 3.18
699 758 2.157474 TCGCGAGTTCACATTGATGTTG 59.843 45.455 3.71 0.00 39.39 3.33
705 764 5.050159 CGAGTTCACATTGATGTTGACAGAA 60.050 40.000 0.00 0.00 39.39 3.02
706 765 6.347969 CGAGTTCACATTGATGTTGACAGAAT 60.348 38.462 0.00 0.00 39.39 2.40
713 772 8.671028 CACATTGATGTTGACAGAATATCAAGA 58.329 33.333 10.87 0.00 39.77 3.02
802 861 4.750098 TCTGACGAAGAAAACATCTGGTTC 59.250 41.667 0.00 0.00 39.29 3.62
846 906 3.214328 CGTTTATTCCCCTCCCTCAATG 58.786 50.000 0.00 0.00 0.00 2.82
890 950 4.946157 AGCTATCCTTTCCTTGTCAACATG 59.054 41.667 0.00 0.00 0.00 3.21
945 1005 5.433526 AGGTGCCTATAAAGACGCAATTTA 58.566 37.500 0.00 0.00 32.04 1.40
978 1047 6.375174 TCAGACATAACAAATCAATCAGGTGG 59.625 38.462 0.00 0.00 0.00 4.61
998 1067 1.154225 CATCCCAAACGCGTGAAGC 60.154 57.895 14.98 0.00 43.95 3.86
1035 1104 1.746615 CAGCAATCCTGACCACGGG 60.747 63.158 0.00 0.00 44.64 5.28
1038 1107 2.933287 AATCCTGACCACGGGCCA 60.933 61.111 4.39 0.00 42.00 5.36
1068 1137 3.834726 CCGTTCCACAGGCACAAA 58.165 55.556 0.00 0.00 0.00 2.83
1089 1158 3.171388 ATCCACCGGATCCTGGGC 61.171 66.667 21.65 0.00 38.09 5.36
1102 1171 1.993391 CTGGGCGGAGGGAAAGGTA 60.993 63.158 0.00 0.00 0.00 3.08
1107 1176 2.186125 GGAGGGAAAGGTACGCCG 59.814 66.667 0.00 0.00 40.50 6.46
1122 1191 1.329599 ACGCCGTTCTTGTTCTGTTTC 59.670 47.619 0.00 0.00 0.00 2.78
1125 1194 3.120991 CGCCGTTCTTGTTCTGTTTCTAG 60.121 47.826 0.00 0.00 0.00 2.43
1141 1219 5.945784 TGTTTCTAGGCAATTACTCTGCATT 59.054 36.000 0.00 0.00 41.78 3.56
1152 1230 8.190784 GCAATTACTCTGCATTACCATAGTTTT 58.809 33.333 0.00 0.00 39.69 2.43
1153 1231 9.722056 CAATTACTCTGCATTACCATAGTTTTC 57.278 33.333 0.00 0.00 0.00 2.29
1154 1232 9.686683 AATTACTCTGCATTACCATAGTTTTCT 57.313 29.630 0.00 0.00 0.00 2.52
1156 1234 6.951971 ACTCTGCATTACCATAGTTTTCTCT 58.048 36.000 0.00 0.00 0.00 3.10
1158 1236 6.349300 TCTGCATTACCATAGTTTTCTCTCC 58.651 40.000 0.00 0.00 0.00 3.71
1160 1238 6.480763 TGCATTACCATAGTTTTCTCTCCAA 58.519 36.000 0.00 0.00 0.00 3.53
1161 1239 6.599244 TGCATTACCATAGTTTTCTCTCCAAG 59.401 38.462 0.00 0.00 0.00 3.61
1162 1240 6.599638 GCATTACCATAGTTTTCTCTCCAAGT 59.400 38.462 0.00 0.00 0.00 3.16
1163 1241 7.201652 GCATTACCATAGTTTTCTCTCCAAGTC 60.202 40.741 0.00 0.00 0.00 3.01
1164 1242 4.822026 ACCATAGTTTTCTCTCCAAGTCG 58.178 43.478 0.00 0.00 0.00 4.18
1165 1243 4.283722 ACCATAGTTTTCTCTCCAAGTCGT 59.716 41.667 0.00 0.00 0.00 4.34
1166 1244 4.627467 CCATAGTTTTCTCTCCAAGTCGTG 59.373 45.833 0.00 0.00 0.00 4.35
1177 1255 3.227810 CCAAGTCGTGGGAGTAGTTAC 57.772 52.381 0.00 0.00 44.64 2.50
1179 1257 2.479566 AGTCGTGGGAGTAGTTACGA 57.520 50.000 0.00 0.00 42.49 3.43
1186 1264 1.135286 GGGAGTAGTTACGAACACCGG 60.135 57.143 0.00 0.00 43.93 5.28
1199 1277 1.826054 CACCGGTGTTGGGCTTTGA 60.826 57.895 26.95 0.00 0.00 2.69
1214 1292 1.171549 TTTGATTGCAGCTGCGGACA 61.172 50.000 32.11 26.03 45.83 4.02
1237 1315 2.172505 TCTGCTGTGGAAGAACAGGAAA 59.827 45.455 6.48 0.00 46.22 3.13
1339 1417 1.068753 CCAGATCGCCATCTTCGCT 59.931 57.895 0.00 0.00 37.25 4.93
1360 1438 0.533491 TGCTTGCCATCTTCATTGCC 59.467 50.000 0.00 0.00 0.00 4.52
1374 1452 2.567564 ATTGCCTCAAATGCTGCGCC 62.568 55.000 4.18 0.00 0.00 6.53
1397 1475 0.392193 CTTCGACAGGCATGGCTTCT 60.392 55.000 20.85 7.55 29.20 2.85
1409 1487 3.243839 GCATGGCTTCTTTTCTTTCCACA 60.244 43.478 0.00 0.00 0.00 4.17
1428 1506 4.202620 CCACAGAGAGGAGATATCCCAGTA 60.203 50.000 1.81 0.00 0.00 2.74
1448 1530 9.233232 CCCAGTATTTATTTTTCGAGTAATTGC 57.767 33.333 0.27 0.00 0.00 3.56
1539 1621 1.888215 TACCACAAGTCGTCGTCTCT 58.112 50.000 0.00 0.00 0.00 3.10
1564 1646 0.677731 CGCCTTCAGAGAAATGGCCA 60.678 55.000 8.56 8.56 40.40 5.36
1716 1798 3.531538 TGTGACAAGTCTTGTTCCAGAC 58.468 45.455 19.09 11.25 45.52 3.51
1720 1802 2.368875 ACAAGTCTTGTTCCAGACCGAT 59.631 45.455 12.62 0.00 43.89 4.18
1779 1861 6.595326 TGAATCAACCAGATTAGACATGACAC 59.405 38.462 0.00 0.00 46.76 3.67
1781 1863 4.219725 TCAACCAGATTAGACATGACACGA 59.780 41.667 0.00 0.00 0.00 4.35
1790 1872 3.792401 AGACATGACACGACACTCAAAA 58.208 40.909 0.00 0.00 0.00 2.44
1809 1891 8.569641 ACTCAAAACAACGTTTAGCCAATATAA 58.430 29.630 0.00 0.00 0.00 0.98
1867 1952 9.651913 AAACTTGTACTGACATTCAAATTGTTT 57.348 25.926 0.00 0.00 34.86 2.83
1980 2065 9.189723 AGTAGAACAGAAATAGTAACGTTCAAC 57.810 33.333 2.82 0.00 36.16 3.18
2000 2085 7.883391 TCAACAAAACCAAATACAGAAGGTA 57.117 32.000 0.00 0.00 36.16 3.08
2283 2368 0.034896 GAGGCCCTGTCAAGACGAAA 59.965 55.000 0.00 0.00 0.00 3.46
2333 2418 8.664079 AGCTGTCAGGACATAATAATAATTCCT 58.336 33.333 2.09 0.00 41.01 3.36
2395 2480 8.570488 CCTGCTATAAGAAAATATGATTGCACA 58.430 33.333 0.00 0.00 0.00 4.57
2717 2806 7.524717 AGTACTAATGGAATGTGTTTTTGCT 57.475 32.000 0.00 0.00 0.00 3.91
2804 2893 0.170116 TATTTGCAAAGCTTCGCCCG 59.830 50.000 18.19 0.00 0.00 6.13
2855 2944 0.314302 AGGACCAAGTGTTCGAGACG 59.686 55.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 0.872021 GTTCCTCGTAGCCATGCTCG 60.872 60.000 0.00 0.00 40.44 5.03
85 86 1.292223 GTGCTGTTCCTCGTAGCCA 59.708 57.895 0.00 0.00 36.64 4.75
142 153 1.610522 CTCTTGTGCTCCCAAAACCAG 59.389 52.381 0.00 0.00 0.00 4.00
231 242 5.564127 GCTTTTAGTAAGTTTTAGCAGCACG 59.436 40.000 0.00 0.00 0.00 5.34
236 247 7.976734 TGCAAAAGCTTTTAGTAAGTTTTAGCA 59.023 29.630 23.44 19.35 31.85 3.49
247 258 3.490526 CGTGCAATGCAAAAGCTTTTAGT 59.509 39.130 23.44 6.48 41.47 2.24
248 259 3.120923 CCGTGCAATGCAAAAGCTTTTAG 60.121 43.478 23.44 17.71 41.47 1.85
250 261 1.598601 CCGTGCAATGCAAAAGCTTTT 59.401 42.857 18.74 18.74 41.47 2.27
367 379 3.059352 ACCTTGGACATGTCTTGCTAC 57.941 47.619 24.50 8.09 0.00 3.58
409 421 2.356135 CGGTCACCCCACTTCAATTAG 58.644 52.381 0.00 0.00 0.00 1.73
473 485 2.846193 ACACCTGTGTTATCAACGCTT 58.154 42.857 0.00 0.00 41.83 4.68
485 497 4.610945 GGAAAATCTGTTCAACACCTGTG 58.389 43.478 0.00 0.00 0.00 3.66
488 504 3.564225 GTCGGAAAATCTGTTCAACACCT 59.436 43.478 0.00 0.00 0.00 4.00
508 524 0.237235 TTTCGCCATTGCTCAACGTC 59.763 50.000 0.00 0.00 34.43 4.34
586 602 1.421485 GCATTTCTCACGGTGCTCG 59.579 57.895 2.51 0.00 45.88 5.03
591 607 0.892755 TACTCCGCATTTCTCACGGT 59.107 50.000 0.00 0.00 46.92 4.83
596 612 4.031878 CGTCTTTCTTACTCCGCATTTCTC 59.968 45.833 0.00 0.00 0.00 2.87
678 695 2.078849 ACATCAATGTGAACTCGCGA 57.921 45.000 9.26 9.26 40.03 5.87
679 696 2.157474 TCAACATCAATGTGAACTCGCG 59.843 45.455 0.00 0.00 41.61 5.87
680 697 3.058983 TGTCAACATCAATGTGAACTCGC 60.059 43.478 0.00 0.00 41.61 5.03
683 700 6.889301 ATTCTGTCAACATCAATGTGAACT 57.111 33.333 0.00 0.00 41.61 3.01
684 701 8.453320 TGATATTCTGTCAACATCAATGTGAAC 58.547 33.333 0.00 0.00 41.61 3.18
685 702 8.564509 TGATATTCTGTCAACATCAATGTGAA 57.435 30.769 0.00 0.00 41.61 3.18
686 703 8.564509 TTGATATTCTGTCAACATCAATGTGA 57.435 30.769 0.00 0.00 41.61 3.58
687 704 8.671028 TCTTGATATTCTGTCAACATCAATGTG 58.329 33.333 0.00 0.00 41.61 3.21
688 705 8.797350 TCTTGATATTCTGTCAACATCAATGT 57.203 30.769 0.00 0.00 44.20 2.71
699 758 5.050499 CGGAACTGCATCTTGATATTCTGTC 60.050 44.000 0.00 0.00 0.00 3.51
705 764 2.158769 TGCCGGAACTGCATCTTGATAT 60.159 45.455 5.05 0.00 45.22 1.63
706 765 1.209261 TGCCGGAACTGCATCTTGATA 59.791 47.619 5.05 0.00 45.22 2.15
945 1005 7.634671 TGATTTGTTATGTCTGATCTTGCAT 57.365 32.000 0.00 0.00 0.00 3.96
951 1011 8.127327 CACCTGATTGATTTGTTATGTCTGATC 58.873 37.037 0.00 0.00 0.00 2.92
952 1012 7.067859 CCACCTGATTGATTTGTTATGTCTGAT 59.932 37.037 0.00 0.00 0.00 2.90
953 1013 6.375174 CCACCTGATTGATTTGTTATGTCTGA 59.625 38.462 0.00 0.00 0.00 3.27
954 1014 6.375174 TCCACCTGATTGATTTGTTATGTCTG 59.625 38.462 0.00 0.00 0.00 3.51
956 1016 6.150976 TGTCCACCTGATTGATTTGTTATGTC 59.849 38.462 0.00 0.00 0.00 3.06
958 1018 6.513806 TGTCCACCTGATTGATTTGTTATG 57.486 37.500 0.00 0.00 0.00 1.90
978 1047 0.165944 CTTCACGCGTTTGGGATGTC 59.834 55.000 10.22 0.00 0.00 3.06
998 1067 1.153588 GGAAAATGTGGCGGCATGG 60.154 57.895 17.19 0.00 0.00 3.66
1038 1107 3.836176 GAACGGCCTCACGACGTGT 62.836 63.158 26.01 6.30 41.12 4.49
1045 1114 2.358737 CCTGTGGAACGGCCTCAC 60.359 66.667 0.00 4.83 43.57 3.51
1046 1115 4.329545 GCCTGTGGAACGGCCTCA 62.330 66.667 0.00 0.00 46.07 3.86
1053 1122 1.234821 TCGATTTGTGCCTGTGGAAC 58.765 50.000 0.00 0.00 37.35 3.62
1089 1158 2.186125 GGCGTACCTTTCCCTCCG 59.814 66.667 0.00 0.00 0.00 4.63
1102 1171 1.329599 GAAACAGAACAAGAACGGCGT 59.670 47.619 6.77 6.77 0.00 5.68
1107 1176 5.751243 TTGCCTAGAAACAGAACAAGAAC 57.249 39.130 0.00 0.00 0.00 3.01
1122 1191 5.368145 TGGTAATGCAGAGTAATTGCCTAG 58.632 41.667 4.56 0.00 40.81 3.02
1125 1194 5.765182 ACTATGGTAATGCAGAGTAATTGCC 59.235 40.000 0.00 0.00 40.81 4.52
1141 1219 5.479375 ACGACTTGGAGAGAAAACTATGGTA 59.521 40.000 0.00 0.00 0.00 3.25
1158 1236 2.485426 TCGTAACTACTCCCACGACTTG 59.515 50.000 0.00 0.00 38.40 3.16
1160 1238 2.479566 TCGTAACTACTCCCACGACT 57.520 50.000 0.00 0.00 38.40 4.18
1161 1239 2.226437 TGTTCGTAACTACTCCCACGAC 59.774 50.000 0.00 0.00 42.54 4.34
1162 1240 2.226437 GTGTTCGTAACTACTCCCACGA 59.774 50.000 0.00 0.00 41.27 4.35
1163 1241 2.589014 GTGTTCGTAACTACTCCCACG 58.411 52.381 0.00 0.00 35.78 4.94
1164 1242 2.669391 CGGTGTTCGTAACTACTCCCAC 60.669 54.545 0.00 0.00 0.00 4.61
1165 1243 1.541147 CGGTGTTCGTAACTACTCCCA 59.459 52.381 0.00 0.00 0.00 4.37
1166 1244 1.135286 CCGGTGTTCGTAACTACTCCC 60.135 57.143 0.00 0.00 37.11 4.30
1167 1245 1.541588 ACCGGTGTTCGTAACTACTCC 59.458 52.381 6.12 0.00 37.11 3.85
1168 1246 2.030805 ACACCGGTGTTCGTAACTACTC 60.031 50.000 34.41 0.00 41.83 2.59
1169 1247 1.956477 ACACCGGTGTTCGTAACTACT 59.044 47.619 34.41 7.30 41.83 2.57
1186 1264 1.787012 CTGCAATCAAAGCCCAACAC 58.213 50.000 0.00 0.00 0.00 3.32
1199 1277 0.679002 AGAATGTCCGCAGCTGCAAT 60.679 50.000 36.03 20.90 42.21 3.56
1214 1292 2.373169 TCCTGTTCTTCCACAGCAGAAT 59.627 45.455 0.00 0.00 42.63 2.40
1237 1315 1.821061 CGAGAACCCCAGCAGACACT 61.821 60.000 0.00 0.00 0.00 3.55
1339 1417 2.363038 GGCAATGAAGATGGCAAGCATA 59.637 45.455 0.00 0.00 42.45 3.14
1374 1452 2.169789 CCATGCCTGTCGAAGAGCG 61.170 63.158 0.00 0.00 36.95 5.03
1397 1475 5.832539 ATCTCCTCTCTGTGGAAAGAAAA 57.167 39.130 0.00 0.00 32.61 2.29
1409 1487 9.851267 AAATAAATACTGGGATATCTCCTCTCT 57.149 33.333 0.00 0.00 41.74 3.10
1428 1506 7.093509 ACTGGGGCAATTACTCGAAAAATAAAT 60.094 33.333 0.00 0.00 0.00 1.40
1436 1514 4.497291 AATACTGGGGCAATTACTCGAA 57.503 40.909 0.00 0.00 0.00 3.71
1438 1516 4.213482 GCTAAATACTGGGGCAATTACTCG 59.787 45.833 0.00 0.00 0.00 4.18
1448 1530 9.803315 GAAATTCTTTAAAGCTAAATACTGGGG 57.197 33.333 10.51 0.00 0.00 4.96
1517 1599 2.419324 GAGACGACGACTTGTGGTATCT 59.581 50.000 0.00 3.16 42.23 1.98
1539 1621 2.613026 TTTCTCTGAAGGCGTGTTCA 57.387 45.000 2.24 2.24 35.16 3.18
1564 1646 2.892852 CCAGTTTGTGGTGAATGGTCAT 59.107 45.455 0.00 0.00 42.17 3.06
1675 1757 4.734854 CACATGGTTTGTCTTTTCTTGACG 59.265 41.667 0.00 0.00 36.00 4.35
1779 1861 3.717404 GCTAAACGTTGTTTTGAGTGTCG 59.283 43.478 0.00 0.00 0.00 4.35
1781 1863 3.440872 TGGCTAAACGTTGTTTTGAGTGT 59.559 39.130 0.00 0.00 0.00 3.55
1790 1872 8.046294 TGTGAATTATATTGGCTAAACGTTGT 57.954 30.769 0.00 0.00 0.00 3.32
1809 1891 7.090173 AGCAATAGCAAAATAACGTTGTGAAT 58.910 30.769 11.99 0.00 45.49 2.57
1867 1952 7.456902 GGGATCCTACCACCTTATAACAATAGA 59.543 40.741 12.58 0.00 0.00 1.98
1980 2065 8.166422 AGTTCTACCTTCTGTATTTGGTTTTG 57.834 34.615 0.00 0.00 34.33 2.44
2000 2085 9.804977 TCCTTTCTGTAGTTACTAGTTAGTTCT 57.195 33.333 0.00 0.73 37.73 3.01
2333 2418 8.603898 TTGAAATCTACTCCAGTATCTTGGTA 57.396 34.615 0.00 0.00 39.35 3.25
2342 2427 8.924511 TCATTTTTCTTGAAATCTACTCCAGT 57.075 30.769 0.00 0.00 0.00 4.00
2395 2480 2.304761 TCGCTTATCTGGGACTTGGTTT 59.695 45.455 0.00 0.00 0.00 3.27
2672 2761 1.827344 ACAGATGTCAGAAGGCGATGA 59.173 47.619 0.00 0.00 0.00 2.92
2804 2893 5.936956 ACCAGATTCAAGATGTTTGTCTCTC 59.063 40.000 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.