Multiple sequence alignment - TraesCS3B01G293400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G293400 chr3B 100.000 4031 0 0 1 4031 472584063 472588093 0.000000e+00 7444
1 TraesCS3B01G293400 chr3B 91.577 1021 79 4 2313 3331 472306670 472305655 0.000000e+00 1402
2 TraesCS3B01G293400 chr3B 91.103 517 23 4 728 1244 472307163 472306670 0.000000e+00 678
3 TraesCS3B01G293400 chr3B 76.804 776 150 22 3202 3960 737477214 737477976 3.750000e-110 409
4 TraesCS3B01G293400 chr3B 76.577 777 149 25 3202 3960 737512699 737513460 2.920000e-106 396
5 TraesCS3B01G293400 chr3B 86.702 376 22 9 361 734 472307541 472307192 3.780000e-105 392
6 TraesCS3B01G293400 chr3B 83.632 391 41 15 1 382 472308314 472307938 2.980000e-91 346
7 TraesCS3B01G293400 chr3B 94.667 75 3 1 3957 4031 472479075 472479148 9.160000e-22 115
8 TraesCS3B01G293400 chr3D 94.829 1721 74 6 2313 4031 362855739 362857446 0.000000e+00 2671
9 TraesCS3B01G293400 chr3D 90.559 1324 107 8 2313 3626 362424365 362423050 0.000000e+00 1736
10 TraesCS3B01G293400 chr3D 94.464 849 20 7 405 1244 362854909 362855739 0.000000e+00 1282
11 TraesCS3B01G293400 chr3D 88.654 520 31 5 728 1244 362424859 362424365 3.440000e-170 608
12 TraesCS3B01G293400 chr3D 92.394 355 13 6 1 351 362854568 362854912 1.010000e-135 494
13 TraesCS3B01G293400 chr3D 92.212 321 20 4 416 734 362425205 362424888 2.210000e-122 449
14 TraesCS3B01G293400 chr3D 81.959 388 44 19 1 380 362426015 362425646 5.060000e-79 305
15 TraesCS3B01G293400 chr4B 99.252 1069 8 0 1245 2313 614064860 614065928 0.000000e+00 1930
16 TraesCS3B01G293400 chr4B 78.995 776 132 22 3201 3960 65958231 65957471 6.010000e-138 501
17 TraesCS3B01G293400 chr6B 98.968 1066 11 0 1245 2310 674948709 674947644 0.000000e+00 1908
18 TraesCS3B01G293400 chr5A 98.874 1066 12 0 1245 2310 706596978 706598043 0.000000e+00 1903
19 TraesCS3B01G293400 chr4A 98.784 1069 12 1 1245 2313 708320076 708321143 0.000000e+00 1901
20 TraesCS3B01G293400 chr3A 88.810 1546 146 16 2313 3839 482928505 482926968 0.000000e+00 1871
21 TraesCS3B01G293400 chr3A 86.732 1643 155 31 2313 3941 482936755 482935162 0.000000e+00 1768
22 TraesCS3B01G293400 chr3A 91.635 526 19 6 728 1244 482929014 482928505 0.000000e+00 704
23 TraesCS3B01G293400 chr3A 88.975 517 27 7 730 1244 482937243 482936755 2.660000e-171 612
24 TraesCS3B01G293400 chr3A 88.828 367 32 8 375 734 482937638 482937274 3.700000e-120 442
25 TraesCS3B01G293400 chr3A 85.204 392 19 11 380 734 482929432 482929043 2.290000e-97 366
26 TraesCS3B01G293400 chr3A 86.923 130 12 4 254 380 482929997 482929870 1.510000e-29 141
27 TraesCS3B01G293400 chr2B 96.825 1071 30 2 1245 2312 772205516 772206585 0.000000e+00 1786
28 TraesCS3B01G293400 chr2D 96.352 1069 37 1 1245 2311 525720799 525721867 0.000000e+00 1757
29 TraesCS3B01G293400 chr2D 79.632 653 124 8 2379 3026 637802431 637803079 1.020000e-125 460
30 TraesCS3B01G293400 chr2D 74.395 703 152 24 3203 3894 57068109 57068794 3.970000e-70 276
31 TraesCS3B01G293400 chr5B 96.078 1071 39 3 1245 2314 584864810 584863742 0.000000e+00 1742
32 TraesCS3B01G293400 chr5B 97.190 961 26 1 1354 2313 50613005 50613965 0.000000e+00 1624
33 TraesCS3B01G293400 chr1A 90.593 1063 100 0 1249 2311 552337462 552336400 0.000000e+00 1410
34 TraesCS3B01G293400 chr1A 89.167 120 13 0 1067 1186 441842088 441842207 2.510000e-32 150
35 TraesCS3B01G293400 chr7B 82.857 700 115 5 2340 3036 727536937 727536240 1.230000e-174 623
36 TraesCS3B01G293400 chr7A 82.251 693 120 3 2331 3021 722767950 722768641 2.680000e-166 595
37 TraesCS3B01G293400 chr1D 79.804 713 124 17 2328 3025 342170514 342171221 6.010000e-138 501
38 TraesCS3B01G293400 chr1D 79.773 440 77 4 3202 3636 8740818 8741250 3.910000e-80 309
39 TraesCS3B01G293400 chr1D 87.500 120 15 0 1067 1186 342170349 342170468 5.430000e-29 139
40 TraesCS3B01G293400 chr2A 76.190 651 127 22 3233 3870 58317474 58318109 6.500000e-83 318
41 TraesCS3B01G293400 chr1B 75.694 576 107 23 3202 3761 535375658 535376216 1.440000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G293400 chr3B 472584063 472588093 4030 False 7444.000000 7444 100.000000 1 4031 1 chr3B.!!$F2 4030
1 TraesCS3B01G293400 chr3B 472305655 472308314 2659 True 704.500000 1402 88.253500 1 3331 4 chr3B.!!$R1 3330
2 TraesCS3B01G293400 chr3B 737477214 737477976 762 False 409.000000 409 76.804000 3202 3960 1 chr3B.!!$F3 758
3 TraesCS3B01G293400 chr3B 737512699 737513460 761 False 396.000000 396 76.577000 3202 3960 1 chr3B.!!$F4 758
4 TraesCS3B01G293400 chr3D 362854568 362857446 2878 False 1482.333333 2671 93.895667 1 4031 3 chr3D.!!$F1 4030
5 TraesCS3B01G293400 chr3D 362423050 362426015 2965 True 774.500000 1736 88.346000 1 3626 4 chr3D.!!$R1 3625
6 TraesCS3B01G293400 chr4B 614064860 614065928 1068 False 1930.000000 1930 99.252000 1245 2313 1 chr4B.!!$F1 1068
7 TraesCS3B01G293400 chr4B 65957471 65958231 760 True 501.000000 501 78.995000 3201 3960 1 chr4B.!!$R1 759
8 TraesCS3B01G293400 chr6B 674947644 674948709 1065 True 1908.000000 1908 98.968000 1245 2310 1 chr6B.!!$R1 1065
9 TraesCS3B01G293400 chr5A 706596978 706598043 1065 False 1903.000000 1903 98.874000 1245 2310 1 chr5A.!!$F1 1065
10 TraesCS3B01G293400 chr4A 708320076 708321143 1067 False 1901.000000 1901 98.784000 1245 2313 1 chr4A.!!$F1 1068
11 TraesCS3B01G293400 chr3A 482935162 482937638 2476 True 940.666667 1768 88.178333 375 3941 3 chr3A.!!$R2 3566
12 TraesCS3B01G293400 chr3A 482926968 482929997 3029 True 770.500000 1871 88.143000 254 3839 4 chr3A.!!$R1 3585
13 TraesCS3B01G293400 chr2B 772205516 772206585 1069 False 1786.000000 1786 96.825000 1245 2312 1 chr2B.!!$F1 1067
14 TraesCS3B01G293400 chr2D 525720799 525721867 1068 False 1757.000000 1757 96.352000 1245 2311 1 chr2D.!!$F2 1066
15 TraesCS3B01G293400 chr2D 637802431 637803079 648 False 460.000000 460 79.632000 2379 3026 1 chr2D.!!$F3 647
16 TraesCS3B01G293400 chr2D 57068109 57068794 685 False 276.000000 276 74.395000 3203 3894 1 chr2D.!!$F1 691
17 TraesCS3B01G293400 chr5B 584863742 584864810 1068 True 1742.000000 1742 96.078000 1245 2314 1 chr5B.!!$R1 1069
18 TraesCS3B01G293400 chr5B 50613005 50613965 960 False 1624.000000 1624 97.190000 1354 2313 1 chr5B.!!$F1 959
19 TraesCS3B01G293400 chr1A 552336400 552337462 1062 True 1410.000000 1410 90.593000 1249 2311 1 chr1A.!!$R1 1062
20 TraesCS3B01G293400 chr7B 727536240 727536937 697 True 623.000000 623 82.857000 2340 3036 1 chr7B.!!$R1 696
21 TraesCS3B01G293400 chr7A 722767950 722768641 691 False 595.000000 595 82.251000 2331 3021 1 chr7A.!!$F1 690
22 TraesCS3B01G293400 chr1D 342170349 342171221 872 False 320.000000 501 83.652000 1067 3025 2 chr1D.!!$F2 1958
23 TraesCS3B01G293400 chr2A 58317474 58318109 635 False 318.000000 318 76.190000 3233 3870 1 chr2A.!!$F1 637
24 TraesCS3B01G293400 chr1B 535375658 535376216 558 False 257.000000 257 75.694000 3202 3761 1 chr1B.!!$F1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 118 0.177604 GGGTGATGAGAGAGGTGCTG 59.822 60.000 0.0 0.0 0.0 4.41 F
109 119 1.189752 GGTGATGAGAGAGGTGCTGA 58.810 55.000 0.0 0.0 0.0 4.26 F
1472 2502 1.452651 CATTGCCCCGCTCACTCAT 60.453 57.895 0.0 0.0 0.0 2.90 F
2146 3179 3.197766 CCTCCACCTACATTGCTTGACTA 59.802 47.826 0.0 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1490 2520 0.611896 CCTCCCGCACCTTCCAATTT 60.612 55.0 0.00 0.0 0.00 1.82 R
1841 2874 2.877300 GCAAAGAGGGCAGAGATCACAA 60.877 50.0 0.00 0.0 0.00 3.33 R
2742 3786 0.793861 GCGCCGTCTTAAATGACACA 59.206 50.0 0.00 0.0 36.82 3.72 R
3629 4702 0.758734 TGGGGAGATATGTGCCTTCG 59.241 55.0 10.34 0.0 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 81 1.888215 ACGTCTTGACCGTGAGTCTA 58.112 50.000 0.00 0.00 46.46 2.59
87 97 3.220110 ACCGTGAGTCTACAAGAGTGAA 58.780 45.455 0.00 0.00 0.00 3.18
104 114 1.079490 TGAAGGGGTGATGAGAGAGGT 59.921 52.381 0.00 0.00 0.00 3.85
105 115 1.484240 GAAGGGGTGATGAGAGAGGTG 59.516 57.143 0.00 0.00 0.00 4.00
106 116 0.980231 AGGGGTGATGAGAGAGGTGC 60.980 60.000 0.00 0.00 0.00 5.01
107 117 0.980231 GGGGTGATGAGAGAGGTGCT 60.980 60.000 0.00 0.00 0.00 4.40
108 118 0.177604 GGGTGATGAGAGAGGTGCTG 59.822 60.000 0.00 0.00 0.00 4.41
109 119 1.189752 GGTGATGAGAGAGGTGCTGA 58.810 55.000 0.00 0.00 0.00 4.26
110 120 1.761784 GGTGATGAGAGAGGTGCTGAT 59.238 52.381 0.00 0.00 0.00 2.90
138 148 6.353323 TGAAGTATGTCTTTGTTGACTCCAA 58.647 36.000 0.00 0.00 37.79 3.53
151 161 2.106338 TGACTCCAAGGATGTGCTTGAA 59.894 45.455 14.75 0.00 32.75 2.69
174 184 2.621338 CTTCTTGTCATTGCTCCGCTA 58.379 47.619 0.00 0.00 0.00 4.26
373 389 8.430063 CAATTGTTCTTAATCTGTGAAATGTGC 58.570 33.333 0.00 0.00 0.00 4.57
461 1392 9.413048 CTAACAGAAAGAAACGAGTAGAAAGAT 57.587 33.333 0.00 0.00 0.00 2.40
721 1701 3.737172 GCACGAGCACCGGCATTT 61.737 61.111 0.00 0.00 44.61 2.32
802 1815 2.472695 TCTGCCGAACTTGCTTGTAT 57.527 45.000 0.00 0.00 0.00 2.29
959 1982 8.242053 TGTGACACACTAGCTAGTAACTAAATC 58.758 37.037 25.63 15.53 35.11 2.17
960 1983 8.242053 GTGACACACTAGCTAGTAACTAAATCA 58.758 37.037 25.63 17.55 34.13 2.57
961 1984 8.242053 TGACACACTAGCTAGTAACTAAATCAC 58.758 37.037 25.63 9.62 34.13 3.06
962 1985 7.545489 ACACACTAGCTAGTAACTAAATCACC 58.455 38.462 25.63 0.00 34.13 4.02
963 1986 7.177921 ACACACTAGCTAGTAACTAAATCACCA 59.822 37.037 25.63 0.00 34.13 4.17
964 1987 7.702772 CACACTAGCTAGTAACTAAATCACCAG 59.297 40.741 25.63 10.75 34.13 4.00
965 1988 7.147880 ACACTAGCTAGTAACTAAATCACCAGG 60.148 40.741 25.63 10.13 34.13 4.45
990 2014 4.441695 TGAGCGGGCTCTGCTTCG 62.442 66.667 20.27 0.00 44.18 3.79
1032 2056 2.601367 GTGGTGGCCATGCTGGTT 60.601 61.111 9.72 0.00 40.46 3.67
1056 2080 2.202946 TTCGCCGTGTCTGCACAA 60.203 55.556 0.00 0.00 45.50 3.33
1179 2203 2.281970 TGCCAGAGCCAGTGCAAG 60.282 61.111 0.00 0.00 41.13 4.01
1472 2502 1.452651 CATTGCCCCGCTCACTCAT 60.453 57.895 0.00 0.00 0.00 2.90
1490 2520 4.816385 ACTCATGAAGCGTCAAAGAGAAAA 59.184 37.500 28.67 0.00 40.09 2.29
1841 2874 4.986708 AAACGCGGGTGGCCCAAT 62.987 61.111 12.47 0.00 45.83 3.16
2146 3179 3.197766 CCTCCACCTACATTGCTTGACTA 59.802 47.826 0.00 0.00 0.00 2.59
2255 3289 7.966204 GTGTATTGTGTGACTTGTAACAAACTT 59.034 33.333 0.00 0.00 36.23 2.66
2763 3807 2.264813 GTGTCATTTAAGACGGCGCTA 58.735 47.619 6.90 0.00 41.41 4.26
2874 3918 4.326227 AGGGTGCCTGGGTACGGA 62.326 66.667 0.00 0.00 29.57 4.69
2889 3933 2.859165 ACGGAGTGATCACCAACATT 57.141 45.000 22.21 2.15 42.51 2.71
2977 4021 4.816990 GCTACTGCGACCTTCTCC 57.183 61.111 0.00 0.00 0.00 3.71
2990 4034 0.382158 CTTCTCCGCGTCAGCTATGA 59.618 55.000 4.92 0.00 42.32 2.15
3144 4200 2.738846 AGCGAATAATGATGCGATCCAC 59.261 45.455 0.00 0.00 36.00 4.02
3198 4254 7.416817 TGCAATAAATGATGTGTTTCTATCCG 58.583 34.615 0.00 0.00 0.00 4.18
3245 4302 9.831737 CATTTAACCTGACTTCAAACTAATGAG 57.168 33.333 0.00 0.00 0.00 2.90
3358 4416 0.396811 AGGCCGAAACTACACAAGCT 59.603 50.000 0.00 0.00 0.00 3.74
3403 4462 6.678568 ACATAATGGGAAACAAAACCATGA 57.321 33.333 0.00 0.00 43.88 3.07
3479 4538 1.876156 CCAACAAGCAGTGAAGAGGAC 59.124 52.381 0.00 0.00 0.00 3.85
3524 4589 1.836999 TTGCCATAGCCCAGTCGTGT 61.837 55.000 0.00 0.00 38.69 4.49
3639 4713 0.252197 GAAGGGGTACGAAGGCACAT 59.748 55.000 0.00 0.00 0.00 3.21
3705 4782 1.152830 GACCACCACCAACCCACAT 59.847 57.895 0.00 0.00 0.00 3.21
3763 4841 0.250338 GCTTTCAAGGAGGACCACGT 60.250 55.000 0.00 0.00 38.94 4.49
3882 4965 2.234143 GAGGGGAATAATGAAGCCAGC 58.766 52.381 0.00 0.00 0.00 4.85
3918 5001 3.471244 GAGGTCGATGCGGAGTCGG 62.471 68.421 8.37 0.00 39.45 4.79
3950 5034 1.808390 CCGTTCTAGGTTTCCGCCG 60.808 63.158 0.00 0.00 0.00 6.46
3969 5053 2.696707 CCGCACACCCTCCTTATACTTA 59.303 50.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 81 2.304180 CTCATCACCCCTTCACTCTTGT 59.696 50.000 0.00 0.00 0.00 3.16
87 97 0.980231 GCACCTCTCTCATCACCCCT 60.980 60.000 0.00 0.00 0.00 4.79
104 114 4.582869 AAGACATACTTCAGCAATCAGCA 58.417 39.130 0.00 0.00 39.23 4.41
105 115 5.106396 ACAAAGACATACTTCAGCAATCAGC 60.106 40.000 0.00 0.00 39.96 4.26
106 116 6.492007 ACAAAGACATACTTCAGCAATCAG 57.508 37.500 0.00 0.00 37.93 2.90
107 117 6.486320 TCAACAAAGACATACTTCAGCAATCA 59.514 34.615 0.00 0.00 37.93 2.57
108 118 6.798959 GTCAACAAAGACATACTTCAGCAATC 59.201 38.462 0.00 0.00 37.93 2.67
109 119 6.488006 AGTCAACAAAGACATACTTCAGCAAT 59.512 34.615 0.00 0.00 40.98 3.56
110 120 5.822519 AGTCAACAAAGACATACTTCAGCAA 59.177 36.000 0.00 0.00 40.98 3.91
138 148 1.707427 AGAAGGGTTCAAGCACATCCT 59.293 47.619 0.00 0.00 0.00 3.24
151 161 1.611673 CGGAGCAATGACAAGAAGGGT 60.612 52.381 0.00 0.00 0.00 4.34
174 184 4.151258 TCAGAAGTATCGAAACGAACGT 57.849 40.909 0.00 0.00 39.99 3.99
308 324 5.652014 CCAGGTTAAGACAGGATTATTGCAA 59.348 40.000 0.00 0.00 0.00 4.08
401 872 2.749621 GACCAGGCAAACTATGTTGGAG 59.250 50.000 7.72 0.00 38.50 3.86
708 1688 0.179129 CATGGAAAATGCCGGTGCTC 60.179 55.000 1.90 0.00 38.71 4.26
721 1701 2.481276 CCGATCTCGTGTAAGCATGGAA 60.481 50.000 0.00 0.00 37.74 3.53
802 1815 4.272991 GCTCTACTTAGTCTAGCTACGCAA 59.727 45.833 10.45 0.00 0.00 4.85
908 1929 1.205179 TCGTGTAGTGGTGTGTGTGTT 59.795 47.619 0.00 0.00 0.00 3.32
909 1930 0.818938 TCGTGTAGTGGTGTGTGTGT 59.181 50.000 0.00 0.00 0.00 3.72
959 1982 2.359602 CTCAGCTGGTGCCTGGTG 60.360 66.667 15.13 17.45 42.18 4.17
960 1983 4.341783 GCTCAGCTGGTGCCTGGT 62.342 66.667 15.13 0.00 40.80 4.00
990 2014 1.280421 ACTCCTCTCATCTTGGGCAAC 59.720 52.381 0.00 0.00 0.00 4.17
1243 2273 5.163733 CGTGTAAACTTGTTGGTGTTAAGGT 60.164 40.000 0.00 0.00 0.00 3.50
1490 2520 0.611896 CCTCCCGCACCTTCCAATTT 60.612 55.000 0.00 0.00 0.00 1.82
1841 2874 2.877300 GCAAAGAGGGCAGAGATCACAA 60.877 50.000 0.00 0.00 0.00 3.33
2146 3179 3.034635 AGGTTAGCCTCAGAATCGATGT 58.965 45.455 0.00 0.00 42.67 3.06
2410 3444 2.342279 CCCGAGAACGAGTTGGCA 59.658 61.111 0.00 0.00 42.66 4.92
2647 3691 4.521130 TGTAGTTGTGTGAGATCTGGAC 57.479 45.455 0.00 0.00 0.00 4.02
2742 3786 0.793861 GCGCCGTCTTAAATGACACA 59.206 50.000 0.00 0.00 36.82 3.72
2748 3792 2.614829 ACCATAGCGCCGTCTTAAAT 57.385 45.000 2.29 0.00 0.00 1.40
2763 3807 1.153369 CGGCGTCATCCAGAACCAT 60.153 57.895 0.00 0.00 0.00 3.55
2874 3918 4.635765 CCGTTGATAATGTTGGTGATCACT 59.364 41.667 24.50 7.02 0.00 3.41
2889 3933 0.968901 ACTCGAGGCCACCGTTGATA 60.969 55.000 18.41 0.00 0.00 2.15
2990 4034 4.324267 GTTATAGCAGTCCAGGTTGTTGT 58.676 43.478 0.00 0.00 0.00 3.32
3090 4143 1.286501 GTCTATCGCAACGCCATTGA 58.713 50.000 0.00 0.00 41.23 2.57
3245 4302 2.622064 ATCTTAGCCGGTTGATGGTC 57.378 50.000 1.90 0.00 0.00 4.02
3324 4382 2.621763 GCCTTGGGCGATCTATGTG 58.378 57.895 0.00 0.00 39.62 3.21
3358 4416 1.795170 GCAGTTTCGCTCTTTGGCCA 61.795 55.000 0.00 0.00 0.00 5.36
3403 4462 1.291877 GGCATTGTGCTCTTCGACGT 61.292 55.000 1.64 0.00 44.28 4.34
3479 4538 2.165167 TCTCCCTGCAAAGCTTGATTG 58.835 47.619 0.00 0.00 0.00 2.67
3524 4589 1.274703 GGTCTCCCCTCTGGCATTGA 61.275 60.000 0.00 0.00 0.00 2.57
3629 4702 0.758734 TGGGGAGATATGTGCCTTCG 59.241 55.000 10.34 0.00 0.00 3.79
3630 4703 1.202818 GGTGGGGAGATATGTGCCTTC 60.203 57.143 10.34 4.02 0.00 3.46
3639 4713 1.075525 CGGTGGAGGTGGGGAGATA 60.076 63.158 0.00 0.00 0.00 1.98
3705 4782 0.837272 GGGGTTGGAGTGCTGCTATA 59.163 55.000 0.00 0.00 0.00 1.31
3802 4880 2.846827 CTCCTTTAGTCCCCTGGTGAAT 59.153 50.000 0.00 0.00 0.00 2.57
3950 5034 7.633116 GCCTATATAAGTATAAGGAGGGTGTGC 60.633 44.444 0.00 0.00 0.00 4.57
3993 5077 9.042008 GTCTTCATTGTCTAAGTTTCACTACAA 57.958 33.333 0.00 0.00 31.28 2.41
3995 5079 8.704234 CAGTCTTCATTGTCTAAGTTTCACTAC 58.296 37.037 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.