Multiple sequence alignment - TraesCS3B01G291700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G291700 chr3B 100.000 4946 0 0 798 5743 469770885 469765940 0.000000e+00 9134.0
1 TraesCS3B01G291700 chr3B 100.000 612 0 0 1 612 469771682 469771071 0.000000e+00 1131.0
2 TraesCS3B01G291700 chr3B 84.973 366 24 13 5396 5733 142275487 142275125 5.510000e-90 342.0
3 TraesCS3B01G291700 chr3D 92.532 3120 178 34 807 3892 360871948 360868850 0.000000e+00 4420.0
4 TraesCS3B01G291700 chr3D 92.118 1015 65 9 3982 4986 360868799 360867790 0.000000e+00 1417.0
5 TraesCS3B01G291700 chr3D 86.667 555 44 16 5214 5743 609819826 609820375 6.410000e-164 588.0
6 TraesCS3B01G291700 chr3D 89.976 409 23 8 206 609 360872431 360872036 3.970000e-141 512.0
7 TraesCS3B01G291700 chr3A 92.971 3016 150 34 798 3790 481022317 481019341 0.000000e+00 4338.0
8 TraesCS3B01G291700 chr3A 90.293 649 45 13 3982 4625 481019190 481018555 0.000000e+00 833.0
9 TraesCS3B01G291700 chr3A 89.708 651 47 12 3982 4625 480970781 480970144 0.000000e+00 813.0
10 TraesCS3B01G291700 chr3A 90.158 569 46 7 4610 5175 480970128 480969567 0.000000e+00 732.0
11 TraesCS3B01G291700 chr3A 85.993 564 53 15 4610 5160 481018540 481017990 1.070000e-161 580.0
12 TraesCS3B01G291700 chr3A 90.286 175 9 4 422 594 481022571 481022403 7.490000e-54 222.0
13 TraesCS3B01G291700 chr7B 88.270 503 30 18 5219 5698 729400192 729399696 4.990000e-160 575.0
14 TraesCS3B01G291700 chr7B 85.468 523 46 9 5221 5741 574476470 574475976 8.530000e-143 518.0
15 TraesCS3B01G291700 chr7B 91.077 325 29 0 5222 5546 544149093 544148769 1.900000e-119 440.0
16 TraesCS3B01G291700 chr7B 90.182 275 25 2 5219 5492 634297053 634297326 1.970000e-94 357.0
17 TraesCS3B01G291700 chr7B 95.541 157 7 0 1 157 60478659 60478815 9.550000e-63 252.0
18 TraesCS3B01G291700 chr7B 90.400 125 12 0 31 155 743282690 743282814 1.280000e-36 165.0
19 TraesCS3B01G291700 chr7D 86.832 524 48 11 5221 5741 533911685 533911180 3.000000e-157 566.0
20 TraesCS3B01G291700 chr7D 91.791 134 8 1 27 157 157534295 157534428 3.530000e-42 183.0
21 TraesCS3B01G291700 chr7A 86.807 523 47 6 5221 5741 613639061 613638559 1.080000e-156 564.0
22 TraesCS3B01G291700 chr7A 91.667 156 11 2 1 155 686320783 686320937 1.250000e-51 215.0
23 TraesCS3B01G291700 chr1B 85.057 522 58 9 5222 5741 566116076 566116579 1.100000e-141 514.0
24 TraesCS3B01G291700 chr1B 91.291 333 24 4 5217 5546 665281078 665280748 3.160000e-122 449.0
25 TraesCS3B01G291700 chr1B 83.219 292 49 0 3496 3787 622467463 622467172 9.490000e-68 268.0
26 TraesCS3B01G291700 chr1B 82.635 167 25 4 1 165 107515481 107515645 1.670000e-30 145.0
27 TraesCS3B01G291700 chr6A 88.863 431 27 9 5332 5743 607047884 607047456 1.430000e-140 510.0
28 TraesCS3B01G291700 chr6A 91.667 156 11 2 1 155 187761976 187762130 1.250000e-51 215.0
29 TraesCS3B01G291700 chr6D 84.661 502 48 8 5246 5743 472377016 472376540 1.870000e-129 473.0
30 TraesCS3B01G291700 chr6B 82.932 498 61 14 5247 5743 22668637 22669111 1.480000e-115 427.0
31 TraesCS3B01G291700 chr6B 87.387 111 14 0 1 111 72316813 72316923 1.680000e-25 128.0
32 TraesCS3B01G291700 chr6B 97.778 45 1 0 160 204 503345695 503345739 1.720000e-10 78.7
33 TraesCS3B01G291700 chr1A 82.768 383 24 16 5391 5743 552481286 552481656 2.600000e-78 303.0
34 TraesCS3B01G291700 chr1A 90.338 207 20 0 5537 5743 539870987 539871193 7.330000e-69 272.0
35 TraesCS3B01G291700 chr1A 82.534 292 51 0 3496 3787 547299848 547299557 2.050000e-64 257.0
36 TraesCS3B01G291700 chr2D 90.594 202 15 2 5545 5743 69350374 69350174 1.230000e-66 265.0
37 TraesCS3B01G291700 chr1D 82.534 292 51 0 3496 3787 452429325 452429616 2.050000e-64 257.0
38 TraesCS3B01G291700 chr1D 82.534 292 51 0 3496 3787 452457133 452456842 2.050000e-64 257.0
39 TraesCS3B01G291700 chr1D 81.507 292 54 0 3496 3787 452479322 452479031 2.070000e-59 241.0
40 TraesCS3B01G291700 chrUn 87.387 111 14 0 1 111 357719757 357719647 1.680000e-25 128.0
41 TraesCS3B01G291700 chrUn 87.387 111 14 0 1 111 358531511 358531401 1.680000e-25 128.0
42 TraesCS3B01G291700 chr4B 97.917 48 1 0 160 207 428180224 428180177 3.690000e-12 84.2
43 TraesCS3B01G291700 chr4B 97.778 45 1 0 160 204 642537498 642537542 1.720000e-10 78.7
44 TraesCS3B01G291700 chr5B 97.826 46 1 0 160 205 146810998 146810953 4.770000e-11 80.5
45 TraesCS3B01G291700 chr5B 97.826 46 1 0 160 205 604897410 604897365 4.770000e-11 80.5
46 TraesCS3B01G291700 chr5B 94.231 52 2 1 160 210 256918303 256918354 1.720000e-10 78.7
47 TraesCS3B01G291700 chr5A 97.778 45 1 0 160 204 294255122 294255166 1.720000e-10 78.7
48 TraesCS3B01G291700 chr2A 97.778 45 1 0 160 204 504324114 504324158 1.720000e-10 78.7
49 TraesCS3B01G291700 chr2B 92.308 52 3 1 160 210 739391433 739391484 7.980000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G291700 chr3B 469765940 469771682 5742 True 5132.500000 9134 100.00000 1 5743 2 chr3B.!!$R2 5742
1 TraesCS3B01G291700 chr3D 360867790 360872431 4641 True 2116.333333 4420 91.54200 206 4986 3 chr3D.!!$R1 4780
2 TraesCS3B01G291700 chr3D 609819826 609820375 549 False 588.000000 588 86.66700 5214 5743 1 chr3D.!!$F1 529
3 TraesCS3B01G291700 chr3A 481017990 481022571 4581 True 1493.250000 4338 89.88575 422 5160 4 chr3A.!!$R2 4738
4 TraesCS3B01G291700 chr3A 480969567 480970781 1214 True 772.500000 813 89.93300 3982 5175 2 chr3A.!!$R1 1193
5 TraesCS3B01G291700 chr7D 533911180 533911685 505 True 566.000000 566 86.83200 5221 5741 1 chr7D.!!$R1 520
6 TraesCS3B01G291700 chr7A 613638559 613639061 502 True 564.000000 564 86.80700 5221 5741 1 chr7A.!!$R1 520
7 TraesCS3B01G291700 chr1B 566116076 566116579 503 False 514.000000 514 85.05700 5222 5741 1 chr1B.!!$F2 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 125 0.034198 TGAGAATCCAAACGCACGGA 59.966 50.000 0.00 0.00 35.27 4.69 F
413 418 0.107214 ACCCATTCACCATGCCTACG 60.107 55.000 0.00 0.00 0.00 3.51 F
444 449 0.534203 TGAACCCAACGTCAGGCTTC 60.534 55.000 3.80 6.03 0.00 3.86 F
1573 1613 0.175760 TCGGAGGTGCTGCACTATTC 59.824 55.000 29.54 22.72 34.40 1.75 F
1616 1656 0.097325 GTGTGCCGTTCAACGAAACA 59.903 50.000 12.68 12.31 46.05 2.83 F
1620 1660 0.452122 GCCGTTCAACGAAACATCGG 60.452 55.000 12.68 2.94 46.05 4.18 F
1630 1670 1.061131 CGAAACATCGGTGATGCTGAC 59.939 52.381 0.65 0.00 43.15 3.51 F
2802 2850 1.739067 AACTTTCCTATCGCTGGTGC 58.261 50.000 0.00 0.00 0.00 5.01 F
3816 3881 0.321564 TCGTTGACTGCCCATTCTGG 60.322 55.000 0.00 0.00 37.25 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1145 1182 0.033504 ACGCGTCATTGACTCCACTT 59.966 50.000 5.58 0.0 0.00 3.16 R
1542 1582 0.034896 ACCTCCGAAAGCATCAACGT 59.965 50.000 0.00 0.0 0.00 3.99 R
1617 1657 0.038251 GTCACTGTCAGCATCACCGA 60.038 55.000 0.00 0.0 0.00 4.69 R
2801 2849 0.978146 TGGGAGAAGAGGCACTAGGC 60.978 60.000 0.00 0.0 41.55 3.93 R
3294 3345 1.651737 TGAAATCCCCGGTCTTCTGA 58.348 50.000 0.00 0.0 0.00 3.27 R
3302 3353 2.038387 AGAATCGTTGAAATCCCCGG 57.962 50.000 0.00 0.0 0.00 5.73 R
3458 3515 4.127566 AGCGGTTGTAACGGTACATTAT 57.872 40.909 15.27 0.0 39.96 1.28 R
4189 4254 0.035056 GTGGCACCTGTCCATAAGCT 60.035 55.000 6.29 0.0 35.81 3.74 R
4850 4956 1.339631 CCGTGATAACCAGCTTTCCCA 60.340 52.381 0.00 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.240493 AAAATATCCGACGGCTGGAG 57.760 50.000 9.66 0.00 39.30 3.86
20 21 1.410004 AAATATCCGACGGCTGGAGA 58.590 50.000 9.66 3.66 39.30 3.71
21 22 0.674534 AATATCCGACGGCTGGAGAC 59.325 55.000 9.66 0.00 39.30 3.36
30 31 2.753043 GCTGGAGACGACCGGGTA 60.753 66.667 6.32 0.00 36.85 3.69
31 32 2.345760 GCTGGAGACGACCGGGTAA 61.346 63.158 6.32 0.00 36.85 2.85
32 33 1.880819 GCTGGAGACGACCGGGTAAA 61.881 60.000 6.32 0.00 36.85 2.01
33 34 0.108945 CTGGAGACGACCGGGTAAAC 60.109 60.000 6.32 0.00 33.06 2.01
34 35 0.827089 TGGAGACGACCGGGTAAACA 60.827 55.000 6.32 0.00 0.00 2.83
35 36 0.533951 GGAGACGACCGGGTAAACAT 59.466 55.000 6.32 0.00 0.00 2.71
36 37 1.470458 GGAGACGACCGGGTAAACATC 60.470 57.143 6.32 0.00 0.00 3.06
37 38 0.533951 AGACGACCGGGTAAACATCC 59.466 55.000 6.32 0.00 0.00 3.51
38 39 0.803380 GACGACCGGGTAAACATCCG 60.803 60.000 6.32 0.00 45.29 4.18
45 46 1.636988 GGGTAAACATCCGACGACTG 58.363 55.000 0.00 0.00 0.00 3.51
46 47 1.636988 GGTAAACATCCGACGACTGG 58.363 55.000 0.00 0.00 0.00 4.00
47 48 1.203052 GGTAAACATCCGACGACTGGA 59.797 52.381 0.00 0.00 40.46 3.86
48 49 2.527100 GTAAACATCCGACGACTGGAG 58.473 52.381 0.00 0.00 39.30 3.86
49 50 1.254026 AAACATCCGACGACTGGAGA 58.746 50.000 0.00 0.00 39.30 3.71
50 51 0.526662 AACATCCGACGACTGGAGAC 59.473 55.000 0.00 0.00 39.30 3.36
51 52 1.062685 CATCCGACGACTGGAGACG 59.937 63.158 0.00 0.00 39.30 4.18
52 53 1.078637 ATCCGACGACTGGAGACGA 60.079 57.895 5.55 0.00 39.30 4.20
53 54 1.367599 ATCCGACGACTGGAGACGAC 61.368 60.000 5.55 0.00 39.30 4.34
54 55 2.479650 CGACGACTGGAGACGACC 59.520 66.667 5.55 0.00 37.02 4.79
55 56 2.479650 GACGACTGGAGACGACCG 59.520 66.667 5.55 0.00 37.02 4.79
56 57 2.031516 GACGACTGGAGACGACCGA 61.032 63.158 5.55 0.00 37.02 4.69
57 58 1.968703 GACGACTGGAGACGACCGAG 61.969 65.000 5.55 0.00 37.02 4.63
58 59 2.486042 GACTGGAGACGACCGAGC 59.514 66.667 0.00 0.00 0.00 5.03
59 60 3.053849 GACTGGAGACGACCGAGCC 62.054 68.421 0.00 0.00 0.00 4.70
60 61 3.827898 CTGGAGACGACCGAGCCC 61.828 72.222 0.00 0.00 0.00 5.19
63 64 3.878519 GAGACGACCGAGCCCGAG 61.879 72.222 0.00 0.00 38.22 4.63
64 65 4.405671 AGACGACCGAGCCCGAGA 62.406 66.667 0.00 0.00 38.22 4.04
65 66 3.210528 GACGACCGAGCCCGAGAT 61.211 66.667 0.00 0.00 38.22 2.75
66 67 3.183776 GACGACCGAGCCCGAGATC 62.184 68.421 0.00 0.00 38.22 2.75
67 68 3.967335 CGACCGAGCCCGAGATCC 61.967 72.222 0.00 0.00 38.22 3.36
68 69 2.833582 GACCGAGCCCGAGATCCA 60.834 66.667 0.00 0.00 38.22 3.41
69 70 2.363795 ACCGAGCCCGAGATCCAA 60.364 61.111 0.00 0.00 38.22 3.53
70 71 2.107141 CCGAGCCCGAGATCCAAC 59.893 66.667 0.00 0.00 38.22 3.77
71 72 2.278857 CGAGCCCGAGATCCAACG 60.279 66.667 0.00 0.00 38.22 4.10
73 74 4.162690 AGCCCGAGATCCAACGGC 62.163 66.667 15.16 9.58 46.59 5.68
75 76 3.781307 CCCGAGATCCAACGGCCA 61.781 66.667 15.16 0.00 46.59 5.36
76 77 2.202932 CCGAGATCCAACGGCCAG 60.203 66.667 2.24 0.00 42.55 4.85
77 78 2.721167 CCGAGATCCAACGGCCAGA 61.721 63.158 2.24 0.00 42.55 3.86
78 79 1.218047 CGAGATCCAACGGCCAGAA 59.782 57.895 2.24 0.00 0.00 3.02
79 80 1.084370 CGAGATCCAACGGCCAGAAC 61.084 60.000 2.24 0.00 0.00 3.01
80 81 1.079127 AGATCCAACGGCCAGAACG 60.079 57.895 2.24 0.00 37.36 3.95
82 83 0.108520 GATCCAACGGCCAGAACGTA 60.109 55.000 2.24 0.00 44.83 3.57
83 84 0.322322 ATCCAACGGCCAGAACGTAA 59.678 50.000 2.24 0.00 44.83 3.18
84 85 0.322322 TCCAACGGCCAGAACGTAAT 59.678 50.000 2.24 0.00 44.83 1.89
85 86 0.725117 CCAACGGCCAGAACGTAATC 59.275 55.000 2.24 0.00 44.83 1.75
86 87 1.434555 CAACGGCCAGAACGTAATCA 58.565 50.000 2.24 0.00 44.83 2.57
87 88 1.393539 CAACGGCCAGAACGTAATCAG 59.606 52.381 2.24 0.00 44.83 2.90
88 89 0.108329 ACGGCCAGAACGTAATCAGG 60.108 55.000 2.24 0.00 43.60 3.86
89 90 0.174845 CGGCCAGAACGTAATCAGGA 59.825 55.000 2.24 0.00 0.00 3.86
90 91 1.404986 CGGCCAGAACGTAATCAGGAA 60.405 52.381 2.24 0.00 0.00 3.36
91 92 2.706890 GGCCAGAACGTAATCAGGAAA 58.293 47.619 0.00 0.00 0.00 3.13
92 93 2.418976 GGCCAGAACGTAATCAGGAAAC 59.581 50.000 0.00 0.00 0.00 2.78
93 94 2.418976 GCCAGAACGTAATCAGGAAACC 59.581 50.000 3.06 0.00 0.00 3.27
94 95 2.671396 CCAGAACGTAATCAGGAAACCG 59.329 50.000 0.00 0.00 0.00 4.44
95 96 3.581755 CAGAACGTAATCAGGAAACCGA 58.418 45.455 0.00 0.00 0.00 4.69
96 97 4.181578 CAGAACGTAATCAGGAAACCGAT 58.818 43.478 0.00 0.00 0.00 4.18
97 98 4.267928 CAGAACGTAATCAGGAAACCGATC 59.732 45.833 0.00 0.00 0.00 3.69
98 99 3.175109 ACGTAATCAGGAAACCGATCC 57.825 47.619 0.00 0.00 39.96 3.36
99 100 2.124903 CGTAATCAGGAAACCGATCCG 58.875 52.381 0.00 0.00 44.60 4.18
100 101 2.223641 CGTAATCAGGAAACCGATCCGA 60.224 50.000 0.00 0.00 44.60 4.55
101 102 2.311124 AATCAGGAAACCGATCCGAC 57.689 50.000 0.00 0.00 44.60 4.79
102 103 0.102481 ATCAGGAAACCGATCCGACG 59.898 55.000 0.00 0.00 44.60 5.12
109 110 3.209812 CCGATCCGACGGCTGAGA 61.210 66.667 9.66 0.00 46.20 3.27
110 111 2.771639 CCGATCCGACGGCTGAGAA 61.772 63.158 9.66 0.00 46.20 2.87
111 112 1.360551 CGATCCGACGGCTGAGAAT 59.639 57.895 9.66 0.00 0.00 2.40
112 113 0.661780 CGATCCGACGGCTGAGAATC 60.662 60.000 9.66 4.95 0.00 2.52
113 114 0.319125 GATCCGACGGCTGAGAATCC 60.319 60.000 9.66 0.00 0.00 3.01
114 115 1.043116 ATCCGACGGCTGAGAATCCA 61.043 55.000 9.66 0.00 0.00 3.41
115 116 1.218047 CCGACGGCTGAGAATCCAA 59.782 57.895 0.00 0.00 0.00 3.53
116 117 0.391130 CCGACGGCTGAGAATCCAAA 60.391 55.000 0.00 0.00 0.00 3.28
117 118 0.721718 CGACGGCTGAGAATCCAAAC 59.278 55.000 0.00 0.00 0.00 2.93
118 119 0.721718 GACGGCTGAGAATCCAAACG 59.278 55.000 0.00 0.00 0.00 3.60
119 120 1.298859 ACGGCTGAGAATCCAAACGC 61.299 55.000 0.00 0.00 0.00 4.84
120 121 1.298157 CGGCTGAGAATCCAAACGCA 61.298 55.000 0.00 0.00 0.00 5.24
121 122 0.169009 GGCTGAGAATCCAAACGCAC 59.831 55.000 0.00 0.00 0.00 5.34
122 123 0.179215 GCTGAGAATCCAAACGCACG 60.179 55.000 0.00 0.00 0.00 5.34
123 124 0.443869 CTGAGAATCCAAACGCACGG 59.556 55.000 0.00 0.00 0.00 4.94
124 125 0.034198 TGAGAATCCAAACGCACGGA 59.966 50.000 0.00 0.00 35.27 4.69
125 126 0.721718 GAGAATCCAAACGCACGGAG 59.278 55.000 0.00 0.00 33.97 4.63
126 127 0.320374 AGAATCCAAACGCACGGAGA 59.680 50.000 0.00 0.00 33.97 3.71
127 128 0.721718 GAATCCAAACGCACGGAGAG 59.278 55.000 0.00 0.00 33.97 3.20
128 129 0.673644 AATCCAAACGCACGGAGAGG 60.674 55.000 0.00 0.00 33.97 3.69
129 130 3.423154 CCAAACGCACGGAGAGGC 61.423 66.667 0.00 0.00 0.00 4.70
130 131 2.357517 CAAACGCACGGAGAGGCT 60.358 61.111 0.00 0.00 0.00 4.58
131 132 1.961277 CAAACGCACGGAGAGGCTT 60.961 57.895 0.00 0.00 0.00 4.35
132 133 1.668151 AAACGCACGGAGAGGCTTC 60.668 57.895 0.00 0.00 0.00 3.86
133 134 2.377628 AAACGCACGGAGAGGCTTCA 62.378 55.000 0.00 0.00 0.00 3.02
134 135 2.172483 AACGCACGGAGAGGCTTCAT 62.172 55.000 0.00 0.00 0.00 2.57
135 136 1.448540 CGCACGGAGAGGCTTCATT 60.449 57.895 0.00 0.00 0.00 2.57
136 137 1.021390 CGCACGGAGAGGCTTCATTT 61.021 55.000 0.00 0.00 0.00 2.32
137 138 1.168714 GCACGGAGAGGCTTCATTTT 58.831 50.000 0.00 0.00 0.00 1.82
138 139 1.135575 GCACGGAGAGGCTTCATTTTG 60.136 52.381 0.00 0.00 0.00 2.44
139 140 2.154462 CACGGAGAGGCTTCATTTTGT 58.846 47.619 0.00 0.00 0.00 2.83
140 141 2.554032 CACGGAGAGGCTTCATTTTGTT 59.446 45.455 0.00 0.00 0.00 2.83
141 142 3.004734 CACGGAGAGGCTTCATTTTGTTT 59.995 43.478 0.00 0.00 0.00 2.83
142 143 3.253432 ACGGAGAGGCTTCATTTTGTTTC 59.747 43.478 0.00 0.00 0.00 2.78
143 144 3.667960 CGGAGAGGCTTCATTTTGTTTCG 60.668 47.826 0.00 0.00 0.00 3.46
144 145 3.366374 GGAGAGGCTTCATTTTGTTTCGG 60.366 47.826 0.00 0.00 0.00 4.30
145 146 3.486383 AGAGGCTTCATTTTGTTTCGGA 58.514 40.909 0.00 0.00 0.00 4.55
146 147 3.253432 AGAGGCTTCATTTTGTTTCGGAC 59.747 43.478 0.00 0.00 0.00 4.79
147 148 3.222603 AGGCTTCATTTTGTTTCGGACT 58.777 40.909 0.00 0.00 0.00 3.85
148 149 3.253432 AGGCTTCATTTTGTTTCGGACTC 59.747 43.478 0.00 0.00 0.00 3.36
149 150 3.253432 GGCTTCATTTTGTTTCGGACTCT 59.747 43.478 0.00 0.00 0.00 3.24
150 151 4.454504 GGCTTCATTTTGTTTCGGACTCTA 59.545 41.667 0.00 0.00 0.00 2.43
151 152 5.048991 GGCTTCATTTTGTTTCGGACTCTAA 60.049 40.000 0.00 0.00 0.00 2.10
152 153 5.851703 GCTTCATTTTGTTTCGGACTCTAAC 59.148 40.000 0.00 0.00 0.00 2.34
153 154 6.512741 GCTTCATTTTGTTTCGGACTCTAACA 60.513 38.462 0.00 0.00 0.00 2.41
154 155 6.928979 TCATTTTGTTTCGGACTCTAACAA 57.071 33.333 2.46 2.46 39.30 2.83
155 156 7.504924 TCATTTTGTTTCGGACTCTAACAAT 57.495 32.000 6.56 0.00 40.32 2.71
156 157 7.359595 TCATTTTGTTTCGGACTCTAACAATG 58.640 34.615 6.56 4.31 40.32 2.82
157 158 6.928979 TTTTGTTTCGGACTCTAACAATGA 57.071 33.333 6.56 0.00 40.32 2.57
158 159 6.928979 TTTGTTTCGGACTCTAACAATGAA 57.071 33.333 6.56 0.00 40.32 2.57
159 160 6.928979 TTGTTTCGGACTCTAACAATGAAA 57.071 33.333 2.46 0.00 36.98 2.69
160 161 7.504924 TTGTTTCGGACTCTAACAATGAAAT 57.495 32.000 2.46 0.00 36.98 2.17
161 162 6.898041 TGTTTCGGACTCTAACAATGAAATG 58.102 36.000 0.00 0.00 0.00 2.32
162 163 5.545658 TTCGGACTCTAACAATGAAATGC 57.454 39.130 0.00 0.00 0.00 3.56
163 164 4.574892 TCGGACTCTAACAATGAAATGCA 58.425 39.130 0.00 0.00 0.00 3.96
164 165 4.391830 TCGGACTCTAACAATGAAATGCAC 59.608 41.667 0.00 0.00 0.00 4.57
165 166 4.651994 GGACTCTAACAATGAAATGCACG 58.348 43.478 0.00 0.00 0.00 5.34
166 167 4.154195 GGACTCTAACAATGAAATGCACGT 59.846 41.667 0.00 0.00 0.00 4.49
167 168 5.334879 GGACTCTAACAATGAAATGCACGTT 60.335 40.000 0.00 0.00 32.17 3.99
168 169 6.128391 GGACTCTAACAATGAAATGCACGTTA 60.128 38.462 0.00 0.00 30.56 3.18
169 170 6.599437 ACTCTAACAATGAAATGCACGTTAC 58.401 36.000 0.00 0.00 30.56 2.50
170 171 6.426937 ACTCTAACAATGAAATGCACGTTACT 59.573 34.615 0.00 0.00 30.56 2.24
171 172 7.601130 ACTCTAACAATGAAATGCACGTTACTA 59.399 33.333 0.00 0.00 30.56 1.82
172 173 7.959733 TCTAACAATGAAATGCACGTTACTAG 58.040 34.615 0.00 0.00 30.56 2.57
173 174 6.554334 AACAATGAAATGCACGTTACTAGT 57.446 33.333 0.00 0.00 0.00 2.57
174 175 6.165659 ACAATGAAATGCACGTTACTAGTC 57.834 37.500 0.00 0.00 0.00 2.59
175 176 5.932303 ACAATGAAATGCACGTTACTAGTCT 59.068 36.000 0.00 0.00 0.00 3.24
176 177 7.094631 ACAATGAAATGCACGTTACTAGTCTA 58.905 34.615 0.00 0.00 0.00 2.59
177 178 7.601130 ACAATGAAATGCACGTTACTAGTCTAA 59.399 33.333 0.00 0.00 0.00 2.10
178 179 7.757097 ATGAAATGCACGTTACTAGTCTAAG 57.243 36.000 0.00 0.00 0.00 2.18
179 180 6.684686 TGAAATGCACGTTACTAGTCTAAGT 58.315 36.000 0.00 0.00 0.00 2.24
180 181 7.149973 TGAAATGCACGTTACTAGTCTAAGTT 58.850 34.615 0.00 0.00 0.00 2.66
181 182 8.298854 TGAAATGCACGTTACTAGTCTAAGTTA 58.701 33.333 0.00 0.00 0.00 2.24
182 183 8.458212 AAATGCACGTTACTAGTCTAAGTTAC 57.542 34.615 0.00 0.00 0.00 2.50
183 184 6.808008 TGCACGTTACTAGTCTAAGTTACT 57.192 37.500 0.00 0.00 29.06 2.24
184 185 7.206981 TGCACGTTACTAGTCTAAGTTACTT 57.793 36.000 0.00 2.32 29.06 2.24
185 186 7.301054 TGCACGTTACTAGTCTAAGTTACTTC 58.699 38.462 0.00 0.00 29.06 3.01
186 187 6.744993 GCACGTTACTAGTCTAAGTTACTTCC 59.255 42.308 0.00 0.00 29.06 3.46
187 188 7.247019 CACGTTACTAGTCTAAGTTACTTCCC 58.753 42.308 0.00 0.00 29.06 3.97
188 189 6.942576 ACGTTACTAGTCTAAGTTACTTCCCA 59.057 38.462 0.00 0.00 29.06 4.37
189 190 7.094592 ACGTTACTAGTCTAAGTTACTTCCCAC 60.095 40.741 0.00 0.00 29.06 4.61
190 191 7.120432 CGTTACTAGTCTAAGTTACTTCCCACT 59.880 40.741 0.00 4.98 29.06 4.00
191 192 9.454859 GTTACTAGTCTAAGTTACTTCCCACTA 57.545 37.037 0.00 5.84 0.00 2.74
193 194 8.522542 ACTAGTCTAAGTTACTTCCCACTATG 57.477 38.462 0.00 4.25 0.00 2.23
194 195 8.334734 ACTAGTCTAAGTTACTTCCCACTATGA 58.665 37.037 0.00 0.00 0.00 2.15
195 196 7.407393 AGTCTAAGTTACTTCCCACTATGAC 57.593 40.000 0.00 0.00 0.00 3.06
196 197 6.380560 AGTCTAAGTTACTTCCCACTATGACC 59.619 42.308 0.00 0.00 31.22 4.02
197 198 6.154021 GTCTAAGTTACTTCCCACTATGACCA 59.846 42.308 0.00 0.00 0.00 4.02
198 199 5.422214 AAGTTACTTCCCACTATGACCAG 57.578 43.478 0.00 0.00 0.00 4.00
199 200 3.197983 AGTTACTTCCCACTATGACCAGC 59.802 47.826 0.00 0.00 0.00 4.85
200 201 0.912486 ACTTCCCACTATGACCAGCC 59.088 55.000 0.00 0.00 0.00 4.85
201 202 1.207791 CTTCCCACTATGACCAGCCT 58.792 55.000 0.00 0.00 0.00 4.58
202 203 2.292918 ACTTCCCACTATGACCAGCCTA 60.293 50.000 0.00 0.00 0.00 3.93
203 204 2.561209 TCCCACTATGACCAGCCTAA 57.439 50.000 0.00 0.00 0.00 2.69
204 205 3.060479 TCCCACTATGACCAGCCTAAT 57.940 47.619 0.00 0.00 0.00 1.73
209 210 6.102615 TCCCACTATGACCAGCCTAATAAAAT 59.897 38.462 0.00 0.00 0.00 1.82
211 212 6.207417 CCACTATGACCAGCCTAATAAAATGG 59.793 42.308 0.00 0.00 37.07 3.16
215 216 4.264172 TGACCAGCCTAATAAAATGGGTGT 60.264 41.667 9.15 0.00 44.92 4.16
238 239 0.795735 CGTTACTAGTGCCACGACGG 60.796 60.000 15.33 0.00 34.49 4.79
245 246 4.386951 TGCCACGACGGGACCATG 62.387 66.667 0.00 0.00 34.06 3.66
247 248 4.386951 CCACGACGGGACCATGCA 62.387 66.667 0.00 0.00 0.00 3.96
248 249 2.125147 CACGACGGGACCATGCAT 60.125 61.111 0.00 0.00 0.00 3.96
249 250 1.142965 CACGACGGGACCATGCATA 59.857 57.895 0.00 0.00 0.00 3.14
250 251 0.875908 CACGACGGGACCATGCATAG 60.876 60.000 0.00 0.00 0.00 2.23
251 252 1.040893 ACGACGGGACCATGCATAGA 61.041 55.000 0.00 0.00 0.00 1.98
252 253 0.318441 CGACGGGACCATGCATAGAT 59.682 55.000 0.00 0.00 0.00 1.98
280 281 1.354031 TCAATTTGGCTAGCTGGGTCA 59.646 47.619 15.72 0.00 0.00 4.02
304 305 2.347490 GGTGACTGGTGTGGCGAT 59.653 61.111 0.00 0.00 0.00 4.58
305 306 2.034879 GGTGACTGGTGTGGCGATG 61.035 63.158 0.00 0.00 0.00 3.84
333 334 1.999648 AGGAAATTTGTCAGCCAGCA 58.000 45.000 0.00 0.00 0.00 4.41
359 360 1.208052 CACCACGTCCTCCAGATTCAT 59.792 52.381 0.00 0.00 0.00 2.57
365 366 2.159240 CGTCCTCCAGATTCATTCGTCA 60.159 50.000 0.00 0.00 0.00 4.35
409 414 0.975887 ACAAACCCATTCACCATGCC 59.024 50.000 0.00 0.00 0.00 4.40
413 418 0.107214 ACCCATTCACCATGCCTACG 60.107 55.000 0.00 0.00 0.00 3.51
441 446 0.818040 AACTGAACCCAACGTCAGGC 60.818 55.000 3.80 0.00 34.77 4.85
442 447 1.071471 CTGAACCCAACGTCAGGCT 59.929 57.895 3.80 0.00 0.00 4.58
443 448 0.535102 CTGAACCCAACGTCAGGCTT 60.535 55.000 3.80 0.00 0.00 4.35
444 449 0.534203 TGAACCCAACGTCAGGCTTC 60.534 55.000 3.80 6.03 0.00 3.86
445 450 1.228154 AACCCAACGTCAGGCTTCC 60.228 57.895 3.80 0.00 0.00 3.46
501 506 1.535860 GCTCAGCCAAAGCGACAAAAA 60.536 47.619 0.00 0.00 46.67 1.94
502 507 2.863704 GCTCAGCCAAAGCGACAAAAAT 60.864 45.455 0.00 0.00 46.67 1.82
820 827 2.206900 TGCTCCTCCTCCCCACAA 59.793 61.111 0.00 0.00 0.00 3.33
1098 1135 2.910688 TCTCTGTTCTCGCTTGGTTT 57.089 45.000 0.00 0.00 0.00 3.27
1145 1182 2.156917 CATGGCTTCTCTGTTTGCTCA 58.843 47.619 0.00 0.00 0.00 4.26
1151 1188 3.470709 CTTCTCTGTTTGCTCAAGTGGA 58.529 45.455 0.00 0.00 0.00 4.02
1525 1565 5.622914 GCATAATATCGGCGGTACCTAGAAA 60.623 44.000 10.90 0.00 35.61 2.52
1539 1579 5.064441 ACCTAGAAAGAAATGCATGTTGC 57.936 39.130 0.00 0.00 45.29 4.17
1555 1595 3.487985 GTTGCAAACGTTGATGCTTTC 57.512 42.857 21.84 10.92 42.97 2.62
1568 1608 2.970974 GCTTTCGGAGGTGCTGCAC 61.971 63.158 24.02 24.02 0.00 4.57
1573 1613 0.175760 TCGGAGGTGCTGCACTATTC 59.824 55.000 29.54 22.72 34.40 1.75
1602 1642 4.700213 ACCAAACTGATAGGTATTGTGTGC 59.300 41.667 0.00 0.00 32.92 4.57
1616 1656 0.097325 GTGTGCCGTTCAACGAAACA 59.903 50.000 12.68 12.31 46.05 2.83
1617 1657 1.018148 TGTGCCGTTCAACGAAACAT 58.982 45.000 12.68 0.00 46.05 2.71
1618 1658 1.003331 TGTGCCGTTCAACGAAACATC 60.003 47.619 12.68 3.05 46.05 3.06
1620 1660 0.452122 GCCGTTCAACGAAACATCGG 60.452 55.000 12.68 2.94 46.05 4.18
1627 1667 1.808411 AACGAAACATCGGTGATGCT 58.192 45.000 0.65 0.00 43.15 3.79
1628 1668 1.078709 ACGAAACATCGGTGATGCTG 58.921 50.000 0.65 0.00 43.15 4.41
1629 1669 1.337728 ACGAAACATCGGTGATGCTGA 60.338 47.619 0.65 0.00 43.15 4.26
1630 1670 1.061131 CGAAACATCGGTGATGCTGAC 59.939 52.381 0.65 0.00 43.15 3.51
1631 1671 2.076100 GAAACATCGGTGATGCTGACA 58.924 47.619 0.65 0.00 43.15 3.58
1667 1708 2.203182 TGTTCCCCCGAGTCCTGT 59.797 61.111 0.00 0.00 0.00 4.00
1694 1737 5.064834 GGTTCAAGAAAATATCCGTCCACTC 59.935 44.000 0.00 0.00 0.00 3.51
1703 1746 2.632987 TCCGTCCACTCGAGATGATA 57.367 50.000 21.68 3.10 0.00 2.15
1717 1760 6.414732 TCGAGATGATACCAAAAACCTCAAT 58.585 36.000 0.00 0.00 0.00 2.57
1876 1919 6.071503 AGGTATCATATACGAAGCCTTACCAC 60.072 42.308 0.00 0.00 31.17 4.16
1877 1920 6.071503 GGTATCATATACGAAGCCTTACCACT 60.072 42.308 0.00 0.00 0.00 4.00
1881 1924 6.946583 TCATATACGAAGCCTTACCACTCTAT 59.053 38.462 0.00 0.00 0.00 1.98
1923 1966 5.178096 TCTGTATTTCCCATGAAGCAGAA 57.822 39.130 0.00 0.00 35.08 3.02
1958 2001 9.515020 TTGAAAATGAGAACTTTGTAACATGTC 57.485 29.630 0.00 0.00 0.00 3.06
1961 2004 7.440523 AATGAGAACTTTGTAACATGTCTCC 57.559 36.000 0.00 0.00 0.00 3.71
2032 2076 6.853720 TCAGATACTGTCTTTACTTCCTTCG 58.146 40.000 0.00 0.00 34.00 3.79
2233 2278 2.872408 GCATAGCTTGCCTGGTTCA 58.128 52.632 9.03 0.00 46.15 3.18
2369 2414 9.868277 GATAACTCCATCGATCTCATATTTTCT 57.132 33.333 0.00 0.00 0.00 2.52
2436 2482 5.583061 CGCACTTATGAACCTGGTTATTGTA 59.417 40.000 12.96 0.70 0.00 2.41
2468 2514 9.434420 CCTTGATTTAATAAACATTTTCAGGCA 57.566 29.630 0.00 0.00 0.00 4.75
2482 2528 8.416329 ACATTTTCAGGCATGATAAAATCCTAC 58.584 33.333 8.27 0.00 34.73 3.18
2577 2623 8.136057 CAAACTAAATTTGTTGGCATGTGTTA 57.864 30.769 0.00 0.00 42.46 2.41
2582 2628 1.979855 TGTTGGCATGTGTTAGCTGT 58.020 45.000 0.00 0.00 0.00 4.40
2584 2630 2.692557 TGTTGGCATGTGTTAGCTGTTT 59.307 40.909 0.00 0.00 0.00 2.83
2630 2678 8.155510 CCTAACCTTTATCCCTTATTGTAGGTC 58.844 40.741 0.00 0.00 33.84 3.85
2793 2841 9.178758 CTAAGGTGAAAATGCTAACTTTCCTAT 57.821 33.333 0.00 0.00 31.75 2.57
2796 2844 5.965918 GTGAAAATGCTAACTTTCCTATCGC 59.034 40.000 0.00 0.00 31.75 4.58
2797 2845 5.880332 TGAAAATGCTAACTTTCCTATCGCT 59.120 36.000 0.00 0.00 31.75 4.93
2798 2846 5.741388 AAATGCTAACTTTCCTATCGCTG 57.259 39.130 0.00 0.00 0.00 5.18
2799 2847 3.179443 TGCTAACTTTCCTATCGCTGG 57.821 47.619 0.00 0.00 0.00 4.85
2800 2848 2.500098 TGCTAACTTTCCTATCGCTGGT 59.500 45.455 0.00 0.00 0.00 4.00
2801 2849 2.866762 GCTAACTTTCCTATCGCTGGTG 59.133 50.000 0.00 0.00 0.00 4.17
2802 2850 1.739067 AACTTTCCTATCGCTGGTGC 58.261 50.000 0.00 0.00 0.00 5.01
2890 2938 7.865889 TGATCGTTACCTACTTTACTGCATATG 59.134 37.037 0.00 0.00 0.00 1.78
2903 2951 3.008330 CTGCATATGAGCTATTGCCTCC 58.992 50.000 6.97 0.00 40.80 4.30
2976 3025 9.807649 AATAATTTTGTGTAGGATTGAATGCTC 57.192 29.630 1.43 0.00 31.56 4.26
2978 3027 5.885230 TTTGTGTAGGATTGAATGCTCTG 57.115 39.130 1.43 0.00 31.56 3.35
2979 3028 4.558226 TGTGTAGGATTGAATGCTCTGT 57.442 40.909 1.43 0.00 31.56 3.41
2995 3045 5.702865 TGCTCTGTCATTTTCATTGCTTAC 58.297 37.500 0.00 0.00 0.00 2.34
2997 3047 5.105997 GCTCTGTCATTTTCATTGCTTACCT 60.106 40.000 0.00 0.00 0.00 3.08
3025 3075 4.592485 TTGCCAACAAATTGATACGGTT 57.408 36.364 0.00 0.00 38.15 4.44
3128 3179 6.497785 TCCTCTGAACTTTCTCTACTTACG 57.502 41.667 0.00 0.00 0.00 3.18
3186 3237 6.441088 AGAATCAAAACCAGGTACTTCTCT 57.559 37.500 0.00 0.00 34.60 3.10
3257 3308 2.742774 TGATGAATATGACTCCACGCG 58.257 47.619 3.53 3.53 0.00 6.01
3294 3345 4.082026 GGCTATGGCAAAAAGTCAACTCAT 60.082 41.667 2.58 0.00 40.87 2.90
3302 3353 5.911838 GCAAAAAGTCAACTCATCAGAAGAC 59.088 40.000 0.00 0.00 0.00 3.01
3315 3366 2.084546 CAGAAGACCGGGGATTTCAAC 58.915 52.381 6.32 0.00 0.00 3.18
3356 3407 6.092748 GCAGTACAAAACCAGTGGAATATTG 58.907 40.000 18.40 16.02 0.00 1.90
3420 3471 5.280985 GGTGGAATTGGTGAGGGCATATATA 60.281 44.000 0.00 0.00 0.00 0.86
3447 3504 6.544931 CCATCTGTCATTATGAAACCTGTGAT 59.455 38.462 0.00 0.00 0.00 3.06
3491 3548 5.669430 CGTTACAACCGCTTATTTATTGTCG 59.331 40.000 0.00 0.00 35.26 4.35
3575 3632 1.949525 GATGTTGGATGTGGAATCGGG 59.050 52.381 0.00 0.00 0.00 5.14
3596 3653 4.223144 GGGGTGGTGATTTTTATATGGCT 58.777 43.478 0.00 0.00 0.00 4.75
3632 3689 6.912082 TGTTCATGTTGTTGGTATTGATCTG 58.088 36.000 0.00 0.00 0.00 2.90
3668 3725 0.524816 CATTTGCACTCGAGCATGCC 60.525 55.000 21.31 4.99 45.19 4.40
3701 3758 5.531122 AGTGTGCAGTAGAGTTTGAAGTA 57.469 39.130 0.00 0.00 0.00 2.24
3733 3790 2.417379 CCACGAAGACATACCCAGACAG 60.417 54.545 0.00 0.00 0.00 3.51
3737 3794 3.487042 CGAAGACATACCCAGACAGTACG 60.487 52.174 0.00 0.00 0.00 3.67
3743 3800 4.222145 ACATACCCAGACAGTACGTTTGAT 59.778 41.667 0.00 2.30 31.28 2.57
3764 3821 2.094390 TGTTATCTACAGCCGTGACACC 60.094 50.000 0.00 0.00 31.68 4.16
3770 3827 1.448540 CAGCCGTGACACCATCCTC 60.449 63.158 0.00 0.00 0.00 3.71
3801 3866 7.117241 CAAGTATGTTCTTGTACACATCGTT 57.883 36.000 0.00 0.00 39.66 3.85
3802 3867 6.706055 AGTATGTTCTTGTACACATCGTTG 57.294 37.500 0.00 0.00 35.24 4.10
3813 3878 1.131126 CACATCGTTGACTGCCCATTC 59.869 52.381 0.00 0.00 0.00 2.67
3814 3879 1.003580 ACATCGTTGACTGCCCATTCT 59.996 47.619 0.00 0.00 0.00 2.40
3816 3881 0.321564 TCGTTGACTGCCCATTCTGG 60.322 55.000 0.00 0.00 37.25 3.86
3831 3896 5.604565 CCATTCTGGGATTTTATTGCTTCC 58.395 41.667 0.00 0.00 32.67 3.46
3832 3897 5.364735 CCATTCTGGGATTTTATTGCTTCCT 59.635 40.000 0.00 0.00 32.67 3.36
3833 3898 6.550854 CCATTCTGGGATTTTATTGCTTCCTA 59.449 38.462 0.00 0.00 32.67 2.94
3834 3899 7.234166 CCATTCTGGGATTTTATTGCTTCCTAT 59.766 37.037 0.00 0.00 32.67 2.57
3840 3905 8.006564 TGGGATTTTATTGCTTCCTATCTGAAT 58.993 33.333 0.00 0.00 0.00 2.57
3850 3915 6.830324 TGCTTCCTATCTGAATTAATTGCAGT 59.170 34.615 5.17 6.67 0.00 4.40
3872 3937 9.357652 GCAGTCTAAATTTAAAGAAATCATGCA 57.642 29.630 0.00 0.00 34.01 3.96
3892 3957 5.005740 TGCATCTGAAGTTTTGCATCTACT 58.994 37.500 0.00 0.00 39.98 2.57
3893 3958 5.106436 TGCATCTGAAGTTTTGCATCTACTG 60.106 40.000 0.00 0.00 39.98 2.74
3894 3959 5.106396 GCATCTGAAGTTTTGCATCTACTGT 60.106 40.000 0.00 0.00 35.22 3.55
3896 3961 6.304356 TCTGAAGTTTTGCATCTACTGTTG 57.696 37.500 0.00 0.00 0.00 3.33
3897 3962 5.239306 TCTGAAGTTTTGCATCTACTGTTGG 59.761 40.000 0.00 0.00 0.00 3.77
3899 3964 5.592282 TGAAGTTTTGCATCTACTGTTGGAA 59.408 36.000 0.00 0.00 0.00 3.53
3900 3965 6.096141 TGAAGTTTTGCATCTACTGTTGGAAA 59.904 34.615 0.00 0.00 33.50 3.13
3917 3982 4.947645 TGGAAACAGATTCTTTTGGCAAG 58.052 39.130 0.00 0.00 38.18 4.01
3918 3983 3.742882 GGAAACAGATTCTTTTGGCAAGC 59.257 43.478 0.00 0.00 38.18 4.01
3919 3984 3.391506 AACAGATTCTTTTGGCAAGCC 57.608 42.857 3.61 3.61 0.00 4.35
3920 3985 1.620323 ACAGATTCTTTTGGCAAGCCC 59.380 47.619 8.89 0.00 34.56 5.19
3922 3987 2.301009 CAGATTCTTTTGGCAAGCCCTT 59.699 45.455 8.89 0.00 34.56 3.95
3925 3990 1.494960 TCTTTTGGCAAGCCCTTGTT 58.505 45.000 8.89 0.00 42.31 2.83
3926 3991 1.836802 TCTTTTGGCAAGCCCTTGTTT 59.163 42.857 8.89 0.00 42.31 2.83
3928 3993 2.035530 TTTGGCAAGCCCTTGTTTTG 57.964 45.000 8.89 0.00 42.31 2.44
3929 3994 0.463474 TTGGCAAGCCCTTGTTTTGC 60.463 50.000 8.89 0.00 44.81 3.68
3930 3995 1.336632 TGGCAAGCCCTTGTTTTGCT 61.337 50.000 8.89 0.00 44.88 3.91
3932 3997 1.667236 GCAAGCCCTTGTTTTGCTTT 58.333 45.000 9.53 0.00 42.37 3.51
3934 3999 3.202097 GCAAGCCCTTGTTTTGCTTTTA 58.798 40.909 9.53 0.00 42.37 1.52
3935 4000 3.002246 GCAAGCCCTTGTTTTGCTTTTAC 59.998 43.478 9.53 0.00 42.37 2.01
3936 4001 4.187694 CAAGCCCTTGTTTTGCTTTTACA 58.812 39.130 0.00 0.00 42.37 2.41
3937 4002 3.792401 AGCCCTTGTTTTGCTTTTACAC 58.208 40.909 0.00 0.00 29.17 2.90
3938 4003 2.869801 GCCCTTGTTTTGCTTTTACACC 59.130 45.455 0.00 0.00 0.00 4.16
3940 4005 4.202172 GCCCTTGTTTTGCTTTTACACCTA 60.202 41.667 0.00 0.00 0.00 3.08
3942 4007 6.342111 CCCTTGTTTTGCTTTTACACCTAAA 58.658 36.000 0.00 0.00 0.00 1.85
3943 4008 6.819146 CCCTTGTTTTGCTTTTACACCTAAAA 59.181 34.615 0.00 0.00 32.11 1.52
3944 4009 7.201574 CCCTTGTTTTGCTTTTACACCTAAAAC 60.202 37.037 0.00 0.00 38.07 2.43
3945 4010 7.547722 CCTTGTTTTGCTTTTACACCTAAAACT 59.452 33.333 0.00 0.00 38.28 2.66
3946 4011 9.575783 CTTGTTTTGCTTTTACACCTAAAACTA 57.424 29.630 0.00 0.00 38.28 2.24
3947 4012 8.914328 TGTTTTGCTTTTACACCTAAAACTAC 57.086 30.769 0.00 0.00 38.28 2.73
3948 4013 7.697291 TGTTTTGCTTTTACACCTAAAACTACG 59.303 33.333 0.00 0.00 38.28 3.51
3949 4014 7.551035 TTTGCTTTTACACCTAAAACTACGA 57.449 32.000 0.00 0.00 30.24 3.43
3950 4015 7.551035 TTGCTTTTACACCTAAAACTACGAA 57.449 32.000 0.00 0.00 30.24 3.85
3951 4016 7.733402 TGCTTTTACACCTAAAACTACGAAT 57.267 32.000 0.00 0.00 30.24 3.34
3952 4017 8.830201 TGCTTTTACACCTAAAACTACGAATA 57.170 30.769 0.00 0.00 30.24 1.75
3953 4018 9.270640 TGCTTTTACACCTAAAACTACGAATAA 57.729 29.630 0.00 0.00 30.24 1.40
3980 4045 9.906660 TTAAGATGAAAATATTGTTGTCACCAC 57.093 29.630 0.00 0.00 0.00 4.16
3984 4049 7.581213 TGAAAATATTGTTGTCACCACTTCT 57.419 32.000 0.00 0.00 0.00 2.85
4013 4078 8.410673 TTTGGTGCCAGAATAACAGTTTTATA 57.589 30.769 0.00 0.00 0.00 0.98
4016 4081 7.094118 TGGTGCCAGAATAACAGTTTTATAACC 60.094 37.037 0.00 0.00 34.71 2.85
4018 4083 8.301002 GTGCCAGAATAACAGTTTTATAACCAA 58.699 33.333 0.00 0.00 34.71 3.67
4021 4086 9.801873 CCAGAATAACAGTTTTATAACCAATGG 57.198 33.333 0.00 0.00 34.71 3.16
4031 4096 7.334171 AGTTTTATAACCAATGGATGCTTTTGC 59.666 33.333 6.16 0.00 39.45 3.68
4165 4230 2.158971 TGCGGCATACATTAAGCAGAGA 60.159 45.455 0.00 0.00 0.00 3.10
4189 4254 5.657474 GGTTACGACCTTCATGATGTAGAA 58.343 41.667 11.29 0.00 42.99 2.10
4332 4401 4.196971 TCCATGATGTCATTGCTGAAGAG 58.803 43.478 0.00 0.00 33.61 2.85
4401 4471 6.772716 CCTATAGTGGTTATGTTTGCTTCCAT 59.227 38.462 0.00 0.00 0.00 3.41
4439 4514 9.909644 GAGCAGTTTCTCGGATACTAATTAATA 57.090 33.333 0.00 0.00 0.00 0.98
4487 4562 3.445987 AGTTTTACAGAGGGAGCTAGCT 58.554 45.455 19.45 19.45 0.00 3.32
4526 4601 3.690460 AGATGAATTTCTGGCCGACTTT 58.310 40.909 0.00 0.00 0.00 2.66
4545 4620 0.104487 TGGTCAGGTAACGCGAACAA 59.896 50.000 15.93 0.00 37.60 2.83
4546 4621 0.509929 GGTCAGGTAACGCGAACAAC 59.490 55.000 15.93 9.70 46.39 3.32
4589 4664 4.022849 GTGAACTGGCAGTTTAGAAGCATT 60.023 41.667 31.60 7.61 38.80 3.56
4627 4732 3.921021 CCTAGCAAGCCGTATCTAATTCG 59.079 47.826 0.00 0.00 0.00 3.34
4658 4763 8.964476 TGATTTATTTTCAGGAGGACTATGAC 57.036 34.615 0.00 0.00 0.00 3.06
4756 4861 0.773644 AAGTGATGGCCCAGAACTGT 59.226 50.000 0.00 0.00 0.00 3.55
4784 4889 5.695816 TGTTTGCAAATAAAGTGGCTTCATC 59.304 36.000 16.21 0.00 0.00 2.92
4850 4956 6.793505 ACTTATCCTATTTCTCGGTGACTT 57.206 37.500 0.00 0.00 0.00 3.01
4903 5009 8.757164 TTAATTCGATTATGCGTGATACTGAT 57.243 30.769 0.00 0.00 0.00 2.90
4959 5071 4.097437 TGTGGCTTTCGTACTAGACTATGG 59.903 45.833 0.00 0.00 0.00 2.74
4990 5104 2.280119 TGTTTGTGCGCGCTCTCT 60.280 55.556 33.29 0.00 0.00 3.10
4992 5106 2.024319 GTTTGTGCGCGCTCTCTCT 61.024 57.895 33.29 0.00 0.00 3.10
5005 5119 3.941483 CGCTCTCTCTCTCTCTCTTTTCT 59.059 47.826 0.00 0.00 0.00 2.52
5046 5160 5.379706 AGCTTGAGAAAATAGCCCTGTAT 57.620 39.130 0.00 0.00 35.53 2.29
5084 5198 5.123344 GTGTTATTTGAATTCGGCACTAGGT 59.877 40.000 0.04 0.00 0.00 3.08
5088 5202 2.181125 TGAATTCGGCACTAGGTGGTA 58.819 47.619 0.04 0.00 33.64 3.25
5089 5203 2.568062 TGAATTCGGCACTAGGTGGTAA 59.432 45.455 0.04 0.00 33.64 2.85
5090 5204 2.981859 ATTCGGCACTAGGTGGTAAG 57.018 50.000 0.00 0.00 33.64 2.34
5091 5205 0.899720 TTCGGCACTAGGTGGTAAGG 59.100 55.000 0.00 0.00 33.64 2.69
5092 5206 0.251922 TCGGCACTAGGTGGTAAGGT 60.252 55.000 0.00 0.00 33.64 3.50
5093 5207 0.108329 CGGCACTAGGTGGTAAGGTG 60.108 60.000 0.00 0.00 33.64 4.00
5094 5208 0.981943 GGCACTAGGTGGTAAGGTGT 59.018 55.000 0.00 0.00 33.64 4.16
5095 5209 2.181975 GGCACTAGGTGGTAAGGTGTA 58.818 52.381 0.00 0.00 33.64 2.90
5119 5233 3.380954 TCACTGCTGCATCTTGTTTGAAA 59.619 39.130 1.31 0.00 0.00 2.69
5144 5260 6.155049 AGCCAAGTATTTAGCATGTGGAAATT 59.845 34.615 0.00 0.00 0.00 1.82
5145 5261 6.818142 GCCAAGTATTTAGCATGTGGAAATTT 59.182 34.615 0.00 0.00 0.00 1.82
5206 5322 9.561069 TCTTTTGCTCAGATAAAATATACTCCC 57.439 33.333 0.00 0.00 0.00 4.30
5207 5323 9.566432 CTTTTGCTCAGATAAAATATACTCCCT 57.434 33.333 0.00 0.00 0.00 4.20
5208 5324 9.561069 TTTTGCTCAGATAAAATATACTCCCTC 57.439 33.333 0.00 0.00 0.00 4.30
5209 5325 7.246171 TGCTCAGATAAAATATACTCCCTCC 57.754 40.000 0.00 0.00 0.00 4.30
5210 5326 6.071334 TGCTCAGATAAAATATACTCCCTCCG 60.071 42.308 0.00 0.00 0.00 4.63
5211 5327 6.153000 GCTCAGATAAAATATACTCCCTCCGA 59.847 42.308 0.00 0.00 0.00 4.55
5212 5328 7.147811 GCTCAGATAAAATATACTCCCTCCGAT 60.148 40.741 0.00 0.00 0.00 4.18
5213 5329 8.666129 TCAGATAAAATATACTCCCTCCGATT 57.334 34.615 0.00 0.00 0.00 3.34
5214 5330 8.750298 TCAGATAAAATATACTCCCTCCGATTC 58.250 37.037 0.00 0.00 0.00 2.52
5215 5331 7.982354 CAGATAAAATATACTCCCTCCGATTCC 59.018 40.741 0.00 0.00 0.00 3.01
5216 5332 7.901861 AGATAAAATATACTCCCTCCGATTCCT 59.098 37.037 0.00 0.00 0.00 3.36
5217 5333 9.198475 GATAAAATATACTCCCTCCGATTCCTA 57.802 37.037 0.00 0.00 0.00 2.94
5218 5334 7.867160 AAAATATACTCCCTCCGATTCCTAA 57.133 36.000 0.00 0.00 0.00 2.69
5219 5335 7.867160 AAATATACTCCCTCCGATTCCTAAA 57.133 36.000 0.00 0.00 0.00 1.85
5273 5390 4.351874 TCCCAAAGTTGAGAAATCGTCT 57.648 40.909 0.00 0.00 40.25 4.18
5304 5421 3.382083 AAACCACCAAAAGTCAGTCCT 57.618 42.857 0.00 0.00 0.00 3.85
5341 5458 3.991773 CGGATACTTTTCGTCCTTCAACA 59.008 43.478 0.00 0.00 0.00 3.33
5351 5468 6.452494 TTCGTCCTTCAACAATTTAAACCA 57.548 33.333 0.00 0.00 0.00 3.67
5384 5501 3.101437 TCCCTCATAACGCTTAAGGTGA 58.899 45.455 4.29 0.00 0.00 4.02
5421 5541 3.067601 GGACCCTGTTTTGATTGAAACGT 59.932 43.478 0.00 0.00 41.32 3.99
5426 5546 4.050553 CTGTTTTGATTGAAACGTGCCAT 58.949 39.130 0.00 0.00 41.32 4.40
5484 5617 4.264460 TGTGCATGAGTATGTGTGTGTA 57.736 40.909 0.00 0.00 36.65 2.90
5550 5706 3.006940 TCCACTTGTGTGTGAACTGAAC 58.993 45.455 0.00 0.00 42.34 3.18
5555 5711 5.294306 CACTTGTGTGTGAACTGAACATAGT 59.706 40.000 0.00 0.00 40.12 2.12
5557 5713 7.936454 CACTTGTGTGTGAACTGAACATAGTTC 60.936 40.741 10.77 10.77 43.76 3.01
5623 5779 8.173775 CAGAGCATTGTACTGAATTTAGTTGAG 58.826 37.037 8.32 0.00 34.07 3.02
5647 5803 7.630082 AGCATAGTCTGAACCCAATTTAGTTA 58.370 34.615 0.00 0.00 0.00 2.24
5691 5847 6.592607 TCTCGACCCAATTTAGTTGAACATAC 59.407 38.462 0.00 0.00 40.37 2.39
5695 5851 7.762615 CGACCCAATTTAGTTGAACATACTCTA 59.237 37.037 0.00 0.00 40.37 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.760613 TCTCCAGCCGTCGGATATTTT 59.239 47.619 17.49 0.00 0.00 1.82
1 2 1.068741 GTCTCCAGCCGTCGGATATTT 59.931 52.381 17.49 0.00 0.00 1.40
2 3 0.674534 GTCTCCAGCCGTCGGATATT 59.325 55.000 17.49 0.00 0.00 1.28
3 4 1.516365 CGTCTCCAGCCGTCGGATAT 61.516 60.000 17.49 0.00 0.00 1.63
4 5 2.184830 CGTCTCCAGCCGTCGGATA 61.185 63.158 17.49 0.00 0.00 2.59
7 8 4.477975 GTCGTCTCCAGCCGTCGG 62.478 72.222 6.99 6.99 0.00 4.79
8 9 4.477975 GGTCGTCTCCAGCCGTCG 62.478 72.222 0.00 0.00 0.00 5.12
9 10 4.477975 CGGTCGTCTCCAGCCGTC 62.478 72.222 0.00 0.00 39.41 4.79
13 14 1.880819 TTTACCCGGTCGTCTCCAGC 61.881 60.000 0.00 0.00 0.00 4.85
14 15 0.108945 GTTTACCCGGTCGTCTCCAG 60.109 60.000 0.00 0.00 0.00 3.86
15 16 0.827089 TGTTTACCCGGTCGTCTCCA 60.827 55.000 0.00 0.00 0.00 3.86
16 17 0.533951 ATGTTTACCCGGTCGTCTCC 59.466 55.000 0.00 0.00 0.00 3.71
17 18 1.470458 GGATGTTTACCCGGTCGTCTC 60.470 57.143 0.00 0.00 0.00 3.36
18 19 0.533951 GGATGTTTACCCGGTCGTCT 59.466 55.000 0.00 0.00 0.00 4.18
19 20 0.803380 CGGATGTTTACCCGGTCGTC 60.803 60.000 0.00 0.00 41.89 4.20
20 21 1.216178 CGGATGTTTACCCGGTCGT 59.784 57.895 0.00 0.00 41.89 4.34
21 22 0.803380 GTCGGATGTTTACCCGGTCG 60.803 60.000 0.00 0.00 45.36 4.79
22 23 0.803380 CGTCGGATGTTTACCCGGTC 60.803 60.000 0.00 0.00 45.36 4.79
23 24 1.216178 CGTCGGATGTTTACCCGGT 59.784 57.895 0.00 0.00 45.36 5.28
24 25 0.803380 GTCGTCGGATGTTTACCCGG 60.803 60.000 0.00 0.00 45.36 5.73
25 26 0.171903 AGTCGTCGGATGTTTACCCG 59.828 55.000 0.00 0.00 46.57 5.28
26 27 1.636988 CAGTCGTCGGATGTTTACCC 58.363 55.000 0.00 0.00 0.00 3.69
27 28 1.203052 TCCAGTCGTCGGATGTTTACC 59.797 52.381 0.00 0.00 0.00 2.85
28 29 2.163010 TCTCCAGTCGTCGGATGTTTAC 59.837 50.000 0.00 0.00 0.00 2.01
29 30 2.163010 GTCTCCAGTCGTCGGATGTTTA 59.837 50.000 0.00 0.00 0.00 2.01
30 31 1.067776 GTCTCCAGTCGTCGGATGTTT 60.068 52.381 0.00 0.00 0.00 2.83
31 32 0.526662 GTCTCCAGTCGTCGGATGTT 59.473 55.000 0.00 0.00 0.00 2.71
32 33 1.645704 CGTCTCCAGTCGTCGGATGT 61.646 60.000 0.00 0.00 0.00 3.06
33 34 1.062685 CGTCTCCAGTCGTCGGATG 59.937 63.158 0.00 0.00 0.00 3.51
34 35 1.078637 TCGTCTCCAGTCGTCGGAT 60.079 57.895 0.00 0.00 0.00 4.18
35 36 2.031516 GTCGTCTCCAGTCGTCGGA 61.032 63.158 0.00 0.00 0.00 4.55
36 37 2.479650 GTCGTCTCCAGTCGTCGG 59.520 66.667 0.00 0.00 0.00 4.79
37 38 2.479650 GGTCGTCTCCAGTCGTCG 59.520 66.667 0.00 0.00 0.00 5.12
38 39 1.968703 CTCGGTCGTCTCCAGTCGTC 61.969 65.000 0.00 0.00 0.00 4.20
39 40 2.031616 TCGGTCGTCTCCAGTCGT 59.968 61.111 0.00 0.00 0.00 4.34
40 41 2.785921 CTCGGTCGTCTCCAGTCG 59.214 66.667 0.00 0.00 0.00 4.18
41 42 2.486042 GCTCGGTCGTCTCCAGTC 59.514 66.667 0.00 0.00 0.00 3.51
42 43 3.063084 GGCTCGGTCGTCTCCAGT 61.063 66.667 0.00 0.00 0.00 4.00
43 44 3.827898 GGGCTCGGTCGTCTCCAG 61.828 72.222 0.00 0.00 0.00 3.86
46 47 3.878519 CTCGGGCTCGGTCGTCTC 61.879 72.222 5.94 0.00 36.95 3.36
47 48 3.700831 ATCTCGGGCTCGGTCGTCT 62.701 63.158 5.94 0.00 36.95 4.18
48 49 3.183776 GATCTCGGGCTCGGTCGTC 62.184 68.421 5.94 0.00 36.95 4.20
49 50 3.210528 GATCTCGGGCTCGGTCGT 61.211 66.667 5.94 0.00 36.95 4.34
50 51 3.967335 GGATCTCGGGCTCGGTCG 61.967 72.222 5.94 0.00 36.95 4.79
51 52 2.423898 TTGGATCTCGGGCTCGGTC 61.424 63.158 5.94 1.84 36.95 4.79
52 53 2.363795 TTGGATCTCGGGCTCGGT 60.364 61.111 5.94 0.00 36.95 4.69
53 54 2.107141 GTTGGATCTCGGGCTCGG 59.893 66.667 5.94 0.00 36.95 4.63
54 55 2.278857 CGTTGGATCTCGGGCTCG 60.279 66.667 0.00 0.00 37.82 5.03
55 56 2.107141 CCGTTGGATCTCGGGCTC 59.893 66.667 13.65 0.00 42.61 4.70
56 57 4.162690 GCCGTTGGATCTCGGGCT 62.163 66.667 19.61 0.00 45.85 5.19
58 59 3.740128 CTGGCCGTTGGATCTCGGG 62.740 68.421 19.61 7.25 45.85 5.14
60 61 1.084370 GTTCTGGCCGTTGGATCTCG 61.084 60.000 0.00 0.00 0.00 4.04
61 62 1.084370 CGTTCTGGCCGTTGGATCTC 61.084 60.000 0.00 0.00 0.00 2.75
62 63 1.079127 CGTTCTGGCCGTTGGATCT 60.079 57.895 0.00 0.00 0.00 2.75
63 64 0.108520 TACGTTCTGGCCGTTGGATC 60.109 55.000 0.00 0.00 39.60 3.36
64 65 0.322322 TTACGTTCTGGCCGTTGGAT 59.678 50.000 0.00 0.00 39.60 3.41
65 66 0.322322 ATTACGTTCTGGCCGTTGGA 59.678 50.000 0.00 0.00 39.60 3.53
66 67 0.725117 GATTACGTTCTGGCCGTTGG 59.275 55.000 0.00 0.00 39.60 3.77
67 68 1.393539 CTGATTACGTTCTGGCCGTTG 59.606 52.381 0.00 0.00 39.60 4.10
68 69 1.674817 CCTGATTACGTTCTGGCCGTT 60.675 52.381 0.00 0.00 39.60 4.44
69 70 0.108329 CCTGATTACGTTCTGGCCGT 60.108 55.000 0.00 0.00 42.06 5.68
70 71 0.174845 TCCTGATTACGTTCTGGCCG 59.825 55.000 8.00 0.00 35.36 6.13
71 72 2.396590 TTCCTGATTACGTTCTGGCC 57.603 50.000 8.00 0.00 35.36 5.36
72 73 2.418976 GGTTTCCTGATTACGTTCTGGC 59.581 50.000 8.00 0.00 35.36 4.85
73 74 2.671396 CGGTTTCCTGATTACGTTCTGG 59.329 50.000 0.00 0.00 36.38 3.86
74 75 3.581755 TCGGTTTCCTGATTACGTTCTG 58.418 45.455 0.00 0.00 0.00 3.02
75 76 3.947910 TCGGTTTCCTGATTACGTTCT 57.052 42.857 0.00 0.00 0.00 3.01
76 77 3.554731 GGATCGGTTTCCTGATTACGTTC 59.445 47.826 0.00 0.00 32.68 3.95
77 78 3.528532 GGATCGGTTTCCTGATTACGTT 58.471 45.455 0.00 0.00 32.68 3.99
78 79 2.480759 CGGATCGGTTTCCTGATTACGT 60.481 50.000 0.00 0.00 33.30 3.57
79 80 2.124903 CGGATCGGTTTCCTGATTACG 58.875 52.381 0.00 0.00 33.30 3.18
80 81 3.121544 GTCGGATCGGTTTCCTGATTAC 58.878 50.000 0.00 0.00 33.30 1.89
81 82 2.223641 CGTCGGATCGGTTTCCTGATTA 60.224 50.000 0.00 0.00 33.30 1.75
82 83 1.470979 CGTCGGATCGGTTTCCTGATT 60.471 52.381 0.00 0.00 33.30 2.57
83 84 0.102481 CGTCGGATCGGTTTCCTGAT 59.898 55.000 0.00 0.00 33.30 2.90
84 85 1.509463 CGTCGGATCGGTTTCCTGA 59.491 57.895 0.00 0.00 33.30 3.86
85 86 1.518572 CCGTCGGATCGGTTTCCTG 60.519 63.158 4.91 0.00 44.77 3.86
86 87 2.890371 CCGTCGGATCGGTTTCCT 59.110 61.111 4.91 0.00 44.77 3.36
93 94 0.661780 GATTCTCAGCCGTCGGATCG 60.662 60.000 17.49 3.92 0.00 3.69
94 95 0.319125 GGATTCTCAGCCGTCGGATC 60.319 60.000 17.49 7.66 0.00 3.36
95 96 1.043116 TGGATTCTCAGCCGTCGGAT 61.043 55.000 17.49 5.54 0.00 4.18
96 97 1.254975 TTGGATTCTCAGCCGTCGGA 61.255 55.000 17.49 0.00 0.00 4.55
97 98 0.391130 TTTGGATTCTCAGCCGTCGG 60.391 55.000 6.99 6.99 0.00 4.79
98 99 0.721718 GTTTGGATTCTCAGCCGTCG 59.278 55.000 0.00 0.00 0.00 5.12
99 100 0.721718 CGTTTGGATTCTCAGCCGTC 59.278 55.000 0.00 0.00 0.00 4.79
100 101 1.298859 GCGTTTGGATTCTCAGCCGT 61.299 55.000 0.00 0.00 0.00 5.68
101 102 1.298157 TGCGTTTGGATTCTCAGCCG 61.298 55.000 0.00 0.00 0.00 5.52
102 103 0.169009 GTGCGTTTGGATTCTCAGCC 59.831 55.000 0.00 0.00 0.00 4.85
103 104 0.179215 CGTGCGTTTGGATTCTCAGC 60.179 55.000 0.00 0.00 0.00 4.26
104 105 0.443869 CCGTGCGTTTGGATTCTCAG 59.556 55.000 0.00 0.00 0.00 3.35
105 106 0.034198 TCCGTGCGTTTGGATTCTCA 59.966 50.000 0.00 0.00 0.00 3.27
106 107 0.721718 CTCCGTGCGTTTGGATTCTC 59.278 55.000 0.00 0.00 32.83 2.87
107 108 0.320374 TCTCCGTGCGTTTGGATTCT 59.680 50.000 0.00 0.00 32.83 2.40
108 109 0.721718 CTCTCCGTGCGTTTGGATTC 59.278 55.000 0.00 0.00 32.83 2.52
109 110 0.673644 CCTCTCCGTGCGTTTGGATT 60.674 55.000 0.00 0.00 32.83 3.01
110 111 1.079127 CCTCTCCGTGCGTTTGGAT 60.079 57.895 0.00 0.00 32.83 3.41
111 112 2.342279 CCTCTCCGTGCGTTTGGA 59.658 61.111 0.00 0.00 0.00 3.53
112 113 3.423154 GCCTCTCCGTGCGTTTGG 61.423 66.667 0.00 0.00 0.00 3.28
113 114 1.901650 GAAGCCTCTCCGTGCGTTTG 61.902 60.000 0.00 0.00 0.00 2.93
114 115 1.668151 GAAGCCTCTCCGTGCGTTT 60.668 57.895 0.00 0.00 0.00 3.60
115 116 2.048127 GAAGCCTCTCCGTGCGTT 60.048 61.111 0.00 0.00 0.00 4.84
116 117 2.172483 AATGAAGCCTCTCCGTGCGT 62.172 55.000 0.00 0.00 0.00 5.24
117 118 1.021390 AAATGAAGCCTCTCCGTGCG 61.021 55.000 0.00 0.00 0.00 5.34
118 119 1.135575 CAAAATGAAGCCTCTCCGTGC 60.136 52.381 0.00 0.00 0.00 5.34
119 120 2.154462 ACAAAATGAAGCCTCTCCGTG 58.846 47.619 0.00 0.00 0.00 4.94
120 121 2.568623 ACAAAATGAAGCCTCTCCGT 57.431 45.000 0.00 0.00 0.00 4.69
121 122 3.667960 CGAAACAAAATGAAGCCTCTCCG 60.668 47.826 0.00 0.00 0.00 4.63
122 123 3.366374 CCGAAACAAAATGAAGCCTCTCC 60.366 47.826 0.00 0.00 0.00 3.71
123 124 3.502211 TCCGAAACAAAATGAAGCCTCTC 59.498 43.478 0.00 0.00 0.00 3.20
124 125 3.253432 GTCCGAAACAAAATGAAGCCTCT 59.747 43.478 0.00 0.00 0.00 3.69
125 126 3.253432 AGTCCGAAACAAAATGAAGCCTC 59.747 43.478 0.00 0.00 0.00 4.70
126 127 3.222603 AGTCCGAAACAAAATGAAGCCT 58.777 40.909 0.00 0.00 0.00 4.58
127 128 3.253432 AGAGTCCGAAACAAAATGAAGCC 59.747 43.478 0.00 0.00 0.00 4.35
128 129 4.489679 AGAGTCCGAAACAAAATGAAGC 57.510 40.909 0.00 0.00 0.00 3.86
129 130 6.954944 TGTTAGAGTCCGAAACAAAATGAAG 58.045 36.000 1.87 0.00 30.54 3.02
130 131 6.928979 TGTTAGAGTCCGAAACAAAATGAA 57.071 33.333 1.87 0.00 30.54 2.57
131 132 6.928979 TTGTTAGAGTCCGAAACAAAATGA 57.071 33.333 11.55 0.00 39.46 2.57
132 133 7.359595 TCATTGTTAGAGTCCGAAACAAAATG 58.640 34.615 15.78 12.10 43.90 2.32
133 134 7.504924 TCATTGTTAGAGTCCGAAACAAAAT 57.495 32.000 15.78 3.29 43.90 1.82
134 135 6.928979 TCATTGTTAGAGTCCGAAACAAAA 57.071 33.333 15.78 8.10 43.90 2.44
135 136 6.928979 TTCATTGTTAGAGTCCGAAACAAA 57.071 33.333 15.78 3.29 43.90 2.83
136 137 6.928979 TTTCATTGTTAGAGTCCGAAACAA 57.071 33.333 14.72 14.72 44.56 2.83
137 138 6.567701 GCATTTCATTGTTAGAGTCCGAAACA 60.568 38.462 0.48 0.48 0.00 2.83
138 139 5.795441 GCATTTCATTGTTAGAGTCCGAAAC 59.205 40.000 0.00 0.00 0.00 2.78
139 140 5.471797 TGCATTTCATTGTTAGAGTCCGAAA 59.528 36.000 0.00 0.00 0.00 3.46
140 141 5.000591 TGCATTTCATTGTTAGAGTCCGAA 58.999 37.500 0.00 0.00 0.00 4.30
141 142 4.391830 GTGCATTTCATTGTTAGAGTCCGA 59.608 41.667 0.00 0.00 0.00 4.55
142 143 4.651994 GTGCATTTCATTGTTAGAGTCCG 58.348 43.478 0.00 0.00 0.00 4.79
143 144 4.154195 ACGTGCATTTCATTGTTAGAGTCC 59.846 41.667 0.00 0.00 0.00 3.85
144 145 5.283060 ACGTGCATTTCATTGTTAGAGTC 57.717 39.130 0.00 0.00 0.00 3.36
145 146 5.689383 AACGTGCATTTCATTGTTAGAGT 57.311 34.783 0.00 0.00 0.00 3.24
146 147 6.831769 AGTAACGTGCATTTCATTGTTAGAG 58.168 36.000 0.00 0.00 32.64 2.43
147 148 6.795098 AGTAACGTGCATTTCATTGTTAGA 57.205 33.333 0.00 0.00 32.64 2.10
148 149 7.739295 ACTAGTAACGTGCATTTCATTGTTAG 58.261 34.615 0.00 0.00 32.64 2.34
149 150 7.601130 AGACTAGTAACGTGCATTTCATTGTTA 59.399 33.333 0.00 0.00 31.50 2.41
150 151 6.426937 AGACTAGTAACGTGCATTTCATTGTT 59.573 34.615 0.00 0.00 32.99 2.83
151 152 5.932303 AGACTAGTAACGTGCATTTCATTGT 59.068 36.000 0.00 0.00 0.00 2.71
152 153 6.408858 AGACTAGTAACGTGCATTTCATTG 57.591 37.500 0.00 0.00 0.00 2.82
153 154 7.817962 ACTTAGACTAGTAACGTGCATTTCATT 59.182 33.333 0.00 0.00 0.00 2.57
154 155 7.321153 ACTTAGACTAGTAACGTGCATTTCAT 58.679 34.615 0.00 0.00 0.00 2.57
155 156 6.684686 ACTTAGACTAGTAACGTGCATTTCA 58.315 36.000 0.00 0.00 0.00 2.69
156 157 7.578169 AACTTAGACTAGTAACGTGCATTTC 57.422 36.000 0.00 0.00 0.00 2.17
157 158 8.302438 AGTAACTTAGACTAGTAACGTGCATTT 58.698 33.333 0.00 0.00 0.00 2.32
158 159 7.824672 AGTAACTTAGACTAGTAACGTGCATT 58.175 34.615 0.00 0.00 0.00 3.56
159 160 7.388460 AGTAACTTAGACTAGTAACGTGCAT 57.612 36.000 0.00 0.00 0.00 3.96
160 161 6.808008 AGTAACTTAGACTAGTAACGTGCA 57.192 37.500 0.00 0.00 0.00 4.57
161 162 6.744993 GGAAGTAACTTAGACTAGTAACGTGC 59.255 42.308 0.00 0.00 0.00 5.34
162 163 7.094634 TGGGAAGTAACTTAGACTAGTAACGTG 60.095 40.741 0.00 0.00 0.00 4.49
163 164 6.942576 TGGGAAGTAACTTAGACTAGTAACGT 59.057 38.462 0.00 0.00 0.00 3.99
164 165 7.120432 AGTGGGAAGTAACTTAGACTAGTAACG 59.880 40.741 0.00 0.00 0.00 3.18
165 166 8.347004 AGTGGGAAGTAACTTAGACTAGTAAC 57.653 38.462 0.00 0.00 0.00 2.50
167 168 9.624373 CATAGTGGGAAGTAACTTAGACTAGTA 57.376 37.037 0.00 0.00 0.00 1.82
168 169 8.334734 TCATAGTGGGAAGTAACTTAGACTAGT 58.665 37.037 0.00 0.00 0.00 2.57
169 170 8.623030 GTCATAGTGGGAAGTAACTTAGACTAG 58.377 40.741 0.00 0.00 31.58 2.57
170 171 7.559170 GGTCATAGTGGGAAGTAACTTAGACTA 59.441 40.741 0.00 0.00 33.27 2.59
171 172 6.380560 GGTCATAGTGGGAAGTAACTTAGACT 59.619 42.308 0.00 0.00 33.27 3.24
172 173 6.154021 TGGTCATAGTGGGAAGTAACTTAGAC 59.846 42.308 0.00 0.00 32.58 2.59
173 174 6.258354 TGGTCATAGTGGGAAGTAACTTAGA 58.742 40.000 0.00 0.00 0.00 2.10
174 175 6.540438 TGGTCATAGTGGGAAGTAACTTAG 57.460 41.667 0.00 0.00 0.00 2.18
175 176 5.105064 GCTGGTCATAGTGGGAAGTAACTTA 60.105 44.000 0.00 0.00 0.00 2.24
176 177 4.323562 GCTGGTCATAGTGGGAAGTAACTT 60.324 45.833 0.00 0.00 0.00 2.66
177 178 3.197983 GCTGGTCATAGTGGGAAGTAACT 59.802 47.826 0.00 0.00 0.00 2.24
178 179 3.532542 GCTGGTCATAGTGGGAAGTAAC 58.467 50.000 0.00 0.00 0.00 2.50
179 180 2.504175 GGCTGGTCATAGTGGGAAGTAA 59.496 50.000 0.00 0.00 0.00 2.24
180 181 2.116238 GGCTGGTCATAGTGGGAAGTA 58.884 52.381 0.00 0.00 0.00 2.24
181 182 0.912486 GGCTGGTCATAGTGGGAAGT 59.088 55.000 0.00 0.00 0.00 3.01
182 183 1.207791 AGGCTGGTCATAGTGGGAAG 58.792 55.000 0.00 0.00 0.00 3.46
183 184 2.561209 TAGGCTGGTCATAGTGGGAA 57.439 50.000 0.00 0.00 0.00 3.97
184 185 2.561209 TTAGGCTGGTCATAGTGGGA 57.439 50.000 0.00 0.00 0.00 4.37
185 186 4.974645 TTATTAGGCTGGTCATAGTGGG 57.025 45.455 0.00 0.00 0.00 4.61
186 187 6.207417 CCATTTTATTAGGCTGGTCATAGTGG 59.793 42.308 0.00 0.00 0.00 4.00
187 188 6.207417 CCCATTTTATTAGGCTGGTCATAGTG 59.793 42.308 0.00 0.00 0.00 2.74
188 189 6.126185 ACCCATTTTATTAGGCTGGTCATAGT 60.126 38.462 0.00 0.00 0.00 2.12
189 190 6.207417 CACCCATTTTATTAGGCTGGTCATAG 59.793 42.308 0.00 0.00 0.00 2.23
190 191 6.068010 CACCCATTTTATTAGGCTGGTCATA 58.932 40.000 0.00 0.00 0.00 2.15
191 192 4.895297 CACCCATTTTATTAGGCTGGTCAT 59.105 41.667 0.00 0.00 0.00 3.06
192 193 4.264172 ACACCCATTTTATTAGGCTGGTCA 60.264 41.667 0.00 0.00 0.00 4.02
193 194 4.278310 ACACCCATTTTATTAGGCTGGTC 58.722 43.478 0.00 0.00 0.00 4.02
194 195 4.264172 TGACACCCATTTTATTAGGCTGGT 60.264 41.667 0.00 0.00 0.00 4.00
195 196 4.277476 TGACACCCATTTTATTAGGCTGG 58.723 43.478 0.00 0.00 0.00 4.85
196 197 5.277974 CGATGACACCCATTTTATTAGGCTG 60.278 44.000 0.00 0.00 35.17 4.85
197 198 4.821805 CGATGACACCCATTTTATTAGGCT 59.178 41.667 0.00 0.00 35.17 4.58
198 199 4.578928 ACGATGACACCCATTTTATTAGGC 59.421 41.667 0.00 0.00 35.17 3.93
199 200 6.693315 AACGATGACACCCATTTTATTAGG 57.307 37.500 0.00 0.00 35.17 2.69
200 201 8.433421 AGTAACGATGACACCCATTTTATTAG 57.567 34.615 0.00 0.00 35.17 1.73
201 202 9.537192 CTAGTAACGATGACACCCATTTTATTA 57.463 33.333 0.00 0.00 35.17 0.98
202 203 8.044908 ACTAGTAACGATGACACCCATTTTATT 58.955 33.333 0.00 0.00 35.17 1.40
203 204 7.494625 CACTAGTAACGATGACACCCATTTTAT 59.505 37.037 0.00 0.00 35.17 1.40
204 205 6.814644 CACTAGTAACGATGACACCCATTTTA 59.185 38.462 0.00 0.00 35.17 1.52
209 210 2.094390 GCACTAGTAACGATGACACCCA 60.094 50.000 0.00 0.00 0.00 4.51
211 212 2.094390 TGGCACTAGTAACGATGACACC 60.094 50.000 0.00 0.00 0.00 4.16
215 216 2.086094 TCGTGGCACTAGTAACGATGA 58.914 47.619 16.72 9.64 39.90 2.92
247 248 7.201679 GCTAGCCAAATTGATATTCGCATCTAT 60.202 37.037 2.29 0.00 0.00 1.98
248 249 6.092670 GCTAGCCAAATTGATATTCGCATCTA 59.907 38.462 2.29 0.00 0.00 1.98
249 250 5.106396 GCTAGCCAAATTGATATTCGCATCT 60.106 40.000 2.29 0.00 0.00 2.90
250 251 5.091431 GCTAGCCAAATTGATATTCGCATC 58.909 41.667 2.29 0.00 0.00 3.91
251 252 4.763793 AGCTAGCCAAATTGATATTCGCAT 59.236 37.500 12.13 0.00 0.00 4.73
252 253 4.023792 CAGCTAGCCAAATTGATATTCGCA 60.024 41.667 12.13 0.00 0.00 5.10
264 265 0.771127 AAGTGACCCAGCTAGCCAAA 59.229 50.000 12.13 0.00 0.00 3.28
280 281 0.107214 CACACCAGTCACCACCAAGT 60.107 55.000 0.00 0.00 0.00 3.16
304 305 5.106555 GCTGACAAATTTCCTTCTCGATTCA 60.107 40.000 0.00 0.00 0.00 2.57
305 306 5.327891 GCTGACAAATTTCCTTCTCGATTC 58.672 41.667 0.00 0.00 0.00 2.52
314 315 1.615392 GTGCTGGCTGACAAATTTCCT 59.385 47.619 0.00 0.00 0.00 3.36
365 366 2.020720 TGAAACTGCCACACGAAATGT 58.979 42.857 0.00 0.00 44.81 2.71
374 375 3.124466 GGTTTGTTTGTTGAAACTGCCAC 59.876 43.478 0.00 0.00 41.87 5.01
383 388 3.515502 TGGTGAATGGGTTTGTTTGTTGA 59.484 39.130 0.00 0.00 0.00 3.18
413 418 1.297689 GGGTTCAGTTACGGGGGTC 59.702 63.158 0.00 0.00 0.00 4.46
551 558 2.653448 CGTGAGATCTGCGCCTCG 60.653 66.667 4.18 0.00 32.30 4.63
817 824 1.590147 GGGATCACGTCGAGGTTGT 59.410 57.895 8.27 0.00 0.00 3.32
820 827 2.360852 ACGGGATCACGTCGAGGT 60.361 61.111 19.33 4.63 45.08 3.85
860 870 3.774702 GAGCGGCGGTTGAACGAC 61.775 66.667 14.71 0.00 38.87 4.34
1098 1135 2.599281 TGCTCGACCGTTCTCCCA 60.599 61.111 0.00 0.00 0.00 4.37
1145 1182 0.033504 ACGCGTCATTGACTCCACTT 59.966 50.000 5.58 0.00 0.00 3.16
1170 1207 3.227372 CTGCAACACACACGCGGAG 62.227 63.158 12.47 4.93 33.74 4.63
1301 1338 4.475135 GGGCGCTCCTCCTTGTCC 62.475 72.222 7.64 0.00 0.00 4.02
1414 1451 3.426963 GGCACGTTTTGACAGTGAAGAAA 60.427 43.478 0.00 0.00 38.06 2.52
1446 1484 3.916172 GCAGTAAATCAACACACATGCTG 59.084 43.478 0.00 0.00 0.00 4.41
1487 1526 7.852945 GCCGATATTATGCTTGATTATACTTGC 59.147 37.037 0.00 0.00 0.00 4.01
1510 1549 2.660189 TTTCTTTCTAGGTACCGCCG 57.340 50.000 6.18 0.00 43.70 6.46
1539 1579 2.574322 CTCCGAAAGCATCAACGTTTG 58.426 47.619 0.00 0.00 0.00 2.93
1542 1582 0.034896 ACCTCCGAAAGCATCAACGT 59.965 50.000 0.00 0.00 0.00 3.99
1555 1595 0.176680 AGAATAGTGCAGCACCTCCG 59.823 55.000 22.41 0.00 34.49 4.63
1568 1608 4.510167 ATCAGTTTGGTCCCCAGAATAG 57.490 45.455 0.00 0.00 33.81 1.73
1573 1613 1.916181 ACCTATCAGTTTGGTCCCCAG 59.084 52.381 0.00 0.00 33.81 4.45
1602 1642 0.863144 ACCGATGTTTCGTTGAACGG 59.137 50.000 18.32 0.00 43.97 4.44
1616 1656 0.897621 TCACTGTCAGCATCACCGAT 59.102 50.000 0.00 0.00 0.00 4.18
1617 1657 0.038251 GTCACTGTCAGCATCACCGA 60.038 55.000 0.00 0.00 0.00 4.69
1618 1658 0.319813 TGTCACTGTCAGCATCACCG 60.320 55.000 0.00 0.00 0.00 4.94
1620 1660 0.786581 CGTGTCACTGTCAGCATCAC 59.213 55.000 0.00 5.88 0.00 3.06
1622 1662 1.986378 GTACGTGTCACTGTCAGCATC 59.014 52.381 0.00 0.00 0.00 3.91
1625 1665 2.135664 AAGTACGTGTCACTGTCAGC 57.864 50.000 0.00 0.00 0.00 4.26
1626 1666 5.747197 ACTAAAAAGTACGTGTCACTGTCAG 59.253 40.000 0.00 0.00 0.00 3.51
1627 1667 5.517411 CACTAAAAAGTACGTGTCACTGTCA 59.483 40.000 0.00 0.00 0.00 3.58
1628 1668 5.517770 ACACTAAAAAGTACGTGTCACTGTC 59.482 40.000 0.00 0.00 35.90 3.51
1629 1669 5.413499 ACACTAAAAAGTACGTGTCACTGT 58.587 37.500 0.00 3.79 35.90 3.55
1630 1670 5.961395 ACACTAAAAAGTACGTGTCACTG 57.039 39.130 0.00 0.00 35.90 3.66
1631 1671 5.521372 GGAACACTAAAAAGTACGTGTCACT 59.479 40.000 0.00 0.00 39.47 3.41
1667 1708 5.770663 TGGACGGATATTTTCTTGAACCAAA 59.229 36.000 0.00 0.00 0.00 3.28
1694 1737 6.683974 ATTGAGGTTTTTGGTATCATCTCG 57.316 37.500 0.00 0.00 0.00 4.04
1717 1760 8.361169 CCTCCAAAGGGAAGAAAATATGTAAA 57.639 34.615 0.00 0.00 44.38 2.01
1797 1840 8.802267 TGTAAAATACAGGAGGAAGGATTTTTG 58.198 33.333 0.00 0.00 34.06 2.44
1806 1849 8.877864 ATGTTGAATGTAAAATACAGGAGGAA 57.122 30.769 0.00 0.00 42.77 3.36
1949 1992 3.056749 ACAAGTCGAGGGAGACATGTTAC 60.057 47.826 0.00 0.00 46.68 2.50
1958 2001 3.315749 GGTGATACTACAAGTCGAGGGAG 59.684 52.174 0.00 0.00 0.00 4.30
1961 2004 4.920640 ATGGTGATACTACAAGTCGAGG 57.079 45.455 0.00 0.00 0.00 4.63
2032 2076 4.943705 TCCAGCACTGATTTTCCTTCATAC 59.056 41.667 0.00 0.00 0.00 2.39
2177 2221 4.093998 AGAATGACATCGCAATTCAGACAC 59.906 41.667 0.00 0.00 0.00 3.67
2369 2414 7.123098 TCCGAAAGATACATCAGTAACCAGTTA 59.877 37.037 0.00 0.00 33.13 2.24
2462 2508 8.103305 GGATTAGTAGGATTTTATCATGCCTGA 58.897 37.037 0.00 0.00 35.41 3.86
2595 2643 4.820173 GGGATAAAGGTTAGGAACATTCGG 59.180 45.833 0.00 0.00 33.79 4.30
2599 2647 8.566109 ACAATAAGGGATAAAGGTTAGGAACAT 58.434 33.333 0.00 0.00 0.00 2.71
2630 2678 4.932200 ACCATTCTTTCTACAAGCTTCTCG 59.068 41.667 0.00 0.00 0.00 4.04
2801 2849 0.978146 TGGGAGAAGAGGCACTAGGC 60.978 60.000 0.00 0.00 41.55 3.93
2802 2850 1.799933 ATGGGAGAAGAGGCACTAGG 58.200 55.000 0.00 0.00 41.55 3.02
2890 2938 1.878734 GCATTCTGGAGGCAATAGCTC 59.121 52.381 0.00 0.00 41.70 4.09
2903 2951 2.989909 TGTCCTGTGGTATGCATTCTG 58.010 47.619 3.54 0.00 0.00 3.02
2959 3008 4.507710 TGACAGAGCATTCAATCCTACAC 58.492 43.478 0.00 0.00 0.00 2.90
2974 3023 6.149973 TCAGGTAAGCAATGAAAATGACAGAG 59.850 38.462 0.00 0.00 0.00 3.35
2976 3025 6.258230 TCAGGTAAGCAATGAAAATGACAG 57.742 37.500 0.00 0.00 0.00 3.51
2978 3027 5.098211 GCTCAGGTAAGCAATGAAAATGAC 58.902 41.667 0.00 0.00 42.05 3.06
2979 3028 5.012239 AGCTCAGGTAAGCAATGAAAATGA 58.988 37.500 0.00 0.00 45.00 2.57
2995 3045 2.600470 TTTGTTGGCAAAAGCTCAGG 57.400 45.000 0.00 0.00 41.15 3.86
2997 3047 4.134379 TCAATTTGTTGGCAAAAGCTCA 57.866 36.364 0.00 0.00 46.23 4.26
3128 3179 2.050985 GCTCCAACGCACTTGCAC 60.051 61.111 1.48 0.00 42.21 4.57
3186 3237 7.334858 TGCATATCTAAAGTGTACAATGGACA 58.665 34.615 0.00 0.00 0.00 4.02
3257 3308 6.633500 TGCCATAGCCAACATATCTAAAAC 57.367 37.500 0.00 0.00 38.69 2.43
3294 3345 1.651737 TGAAATCCCCGGTCTTCTGA 58.348 50.000 0.00 0.00 0.00 3.27
3302 3353 2.038387 AGAATCGTTGAAATCCCCGG 57.962 50.000 0.00 0.00 0.00 5.73
3315 3366 5.523552 TGTACTGCACATTATCCAAGAATCG 59.476 40.000 0.00 0.00 30.04 3.34
3420 3471 6.151648 CACAGGTTTCATAATGACAGATGGTT 59.848 38.462 1.41 0.00 0.00 3.67
3458 3515 4.127566 AGCGGTTGTAACGGTACATTAT 57.872 40.909 15.27 0.00 39.96 1.28
3468 3525 6.536688 ACGACAATAAATAAGCGGTTGTAAC 58.463 36.000 10.73 0.00 33.55 2.50
3491 3548 8.773762 CAAATTCTTTTGTAGTCTCTGTGAAC 57.226 34.615 0.00 0.00 37.92 3.18
3575 3632 4.892934 TCAGCCATATAAAAATCACCACCC 59.107 41.667 0.00 0.00 0.00 4.61
3596 3653 7.866898 CCAACAACATGAACATCATAGTTTTCA 59.133 33.333 0.00 0.00 34.28 2.69
3668 3725 4.539152 GCACACTTGCGTCCAATG 57.461 55.556 0.00 0.00 39.50 2.82
3683 3740 4.280929 TCAGCTACTTCAAACTCTACTGCA 59.719 41.667 0.00 0.00 0.00 4.41
3689 3746 4.453819 GTGCAATCAGCTACTTCAAACTCT 59.546 41.667 0.00 0.00 45.94 3.24
3701 3758 0.035317 TCTTCGTGGTGCAATCAGCT 59.965 50.000 0.00 0.00 45.94 4.24
3733 3790 5.051907 CGGCTGTAGATAACATCAAACGTAC 60.052 44.000 0.00 0.00 37.50 3.67
3737 3794 4.868171 TCACGGCTGTAGATAACATCAAAC 59.132 41.667 0.00 0.00 37.50 2.93
3743 3800 2.094390 GGTGTCACGGCTGTAGATAACA 60.094 50.000 0.00 0.00 36.42 2.41
3764 3821 6.586344 AGAACATACTTGTATGTGGAGGATG 58.414 40.000 22.23 0.00 40.26 3.51
3790 3855 1.076332 GGGCAGTCAACGATGTGTAC 58.924 55.000 0.00 0.00 0.00 2.90
3795 3860 1.399440 CAGAATGGGCAGTCAACGATG 59.601 52.381 0.00 0.00 0.00 3.84
3813 3878 7.000472 TCAGATAGGAAGCAATAAAATCCCAG 59.000 38.462 0.00 0.00 0.00 4.45
3814 3879 6.910191 TCAGATAGGAAGCAATAAAATCCCA 58.090 36.000 0.00 0.00 0.00 4.37
3827 3892 8.674263 AGACTGCAATTAATTCAGATAGGAAG 57.326 34.615 23.11 9.16 0.00 3.46
3857 3922 9.985730 AAAACTTCAGATGCATGATTTCTTTAA 57.014 25.926 2.46 0.00 0.00 1.52
3862 3927 5.636121 TGCAAAACTTCAGATGCATGATTTC 59.364 36.000 2.46 0.00 43.32 2.17
3872 3937 6.072286 CCAACAGTAGATGCAAAACTTCAGAT 60.072 38.462 0.00 0.00 0.00 2.90
3874 3939 5.239306 TCCAACAGTAGATGCAAAACTTCAG 59.761 40.000 0.00 0.00 0.00 3.02
3875 3940 5.129634 TCCAACAGTAGATGCAAAACTTCA 58.870 37.500 0.00 0.00 0.00 3.02
3876 3941 5.689383 TCCAACAGTAGATGCAAAACTTC 57.311 39.130 0.00 0.00 0.00 3.01
3877 3942 6.127479 TGTTTCCAACAGTAGATGCAAAACTT 60.127 34.615 0.00 0.00 36.25 2.66
3892 3957 4.161189 TGCCAAAAGAATCTGTTTCCAACA 59.839 37.500 0.00 0.00 39.52 3.33
3893 3958 4.692228 TGCCAAAAGAATCTGTTTCCAAC 58.308 39.130 0.00 0.00 34.67 3.77
3894 3959 5.350504 TTGCCAAAAGAATCTGTTTCCAA 57.649 34.783 0.00 0.00 34.67 3.53
3896 3961 3.742882 GCTTGCCAAAAGAATCTGTTTCC 59.257 43.478 0.00 0.00 34.67 3.13
3897 3962 3.742882 GGCTTGCCAAAAGAATCTGTTTC 59.257 43.478 6.79 0.00 34.31 2.78
3899 3964 2.037641 GGGCTTGCCAAAAGAATCTGTT 59.962 45.455 14.04 0.00 0.00 3.16
3900 3965 1.620323 GGGCTTGCCAAAAGAATCTGT 59.380 47.619 14.04 0.00 0.00 3.41
3901 3966 1.897802 AGGGCTTGCCAAAAGAATCTG 59.102 47.619 14.04 0.00 0.00 2.90
3903 3968 2.037641 ACAAGGGCTTGCCAAAAGAATC 59.962 45.455 14.04 0.00 44.03 2.52
3904 3969 2.049372 ACAAGGGCTTGCCAAAAGAAT 58.951 42.857 14.04 0.00 44.03 2.40
3906 3971 1.494960 AACAAGGGCTTGCCAAAAGA 58.505 45.000 14.04 0.00 44.03 2.52
3907 3972 2.330440 AAACAAGGGCTTGCCAAAAG 57.670 45.000 14.04 2.91 44.03 2.27
3910 3975 0.463474 GCAAAACAAGGGCTTGCCAA 60.463 50.000 14.04 0.00 44.03 4.52
3911 3976 1.145819 GCAAAACAAGGGCTTGCCA 59.854 52.632 14.04 0.00 44.03 4.92
3912 3977 0.179048 AAGCAAAACAAGGGCTTGCC 60.179 50.000 2.49 2.49 45.44 4.52
3913 3978 1.667236 AAAGCAAAACAAGGGCTTGC 58.333 45.000 0.00 0.00 46.39 4.01
3917 3982 2.869801 GGTGTAAAAGCAAAACAAGGGC 59.130 45.455 0.00 0.00 0.00 5.19
3918 3983 4.400529 AGGTGTAAAAGCAAAACAAGGG 57.599 40.909 0.00 0.00 0.00 3.95
3919 3984 7.547722 AGTTTTAGGTGTAAAAGCAAAACAAGG 59.452 33.333 9.57 0.00 38.52 3.61
3920 3985 8.474006 AGTTTTAGGTGTAAAAGCAAAACAAG 57.526 30.769 9.57 0.00 38.52 3.16
3922 3987 7.697291 CGTAGTTTTAGGTGTAAAAGCAAAACA 59.303 33.333 9.57 0.00 38.52 2.83
3925 3990 7.551035 TCGTAGTTTTAGGTGTAAAAGCAAA 57.449 32.000 0.00 0.00 38.52 3.68
3926 3991 7.551035 TTCGTAGTTTTAGGTGTAAAAGCAA 57.449 32.000 0.00 0.00 38.52 3.91
3954 4019 9.906660 GTGGTGACAACAATATTTTCATCTTAA 57.093 29.630 0.00 0.00 46.06 1.85
3955 4020 9.295825 AGTGGTGACAACAATATTTTCATCTTA 57.704 29.630 0.00 0.00 46.06 2.10
3956 4021 8.181904 AGTGGTGACAACAATATTTTCATCTT 57.818 30.769 0.00 0.00 46.06 2.40
3957 4022 7.765695 AGTGGTGACAACAATATTTTCATCT 57.234 32.000 0.00 0.00 46.06 2.90
3958 4023 8.299570 AGAAGTGGTGACAACAATATTTTCATC 58.700 33.333 0.00 0.00 46.06 2.92
3959 4024 8.181904 AGAAGTGGTGACAACAATATTTTCAT 57.818 30.769 0.00 0.00 46.06 2.57
3960 4025 7.581213 AGAAGTGGTGACAACAATATTTTCA 57.419 32.000 0.00 0.00 46.06 2.69
3961 4026 8.871686 AAAGAAGTGGTGACAACAATATTTTC 57.128 30.769 0.00 0.00 46.06 2.29
3965 4030 9.912634 CAAATAAAGAAGTGGTGACAACAATAT 57.087 29.630 0.00 0.00 46.06 1.28
3966 4031 8.356657 CCAAATAAAGAAGTGGTGACAACAATA 58.643 33.333 0.00 0.00 46.06 1.90
3967 4032 7.147742 ACCAAATAAAGAAGTGGTGACAACAAT 60.148 33.333 0.00 0.00 46.06 2.71
3968 4033 6.153680 ACCAAATAAAGAAGTGGTGACAACAA 59.846 34.615 0.00 0.00 46.06 2.83
3969 4034 5.654650 ACCAAATAAAGAAGTGGTGACAACA 59.345 36.000 0.00 0.00 46.06 3.33
3970 4035 6.144078 ACCAAATAAAGAAGTGGTGACAAC 57.856 37.500 0.00 0.00 46.06 3.32
3976 4041 3.571590 TGGCACCAAATAAAGAAGTGGT 58.428 40.909 0.00 0.00 45.32 4.16
3977 4042 3.826157 TCTGGCACCAAATAAAGAAGTGG 59.174 43.478 0.00 0.00 37.17 4.00
3978 4043 5.452078 TTCTGGCACCAAATAAAGAAGTG 57.548 39.130 0.00 0.00 0.00 3.16
3979 4044 7.232534 TGTTATTCTGGCACCAAATAAAGAAGT 59.767 33.333 13.69 0.00 29.37 3.01
3980 4045 7.601856 TGTTATTCTGGCACCAAATAAAGAAG 58.398 34.615 13.69 0.00 29.37 2.85
3984 4049 6.909550 ACTGTTATTCTGGCACCAAATAAA 57.090 33.333 13.69 7.79 29.37 1.40
4016 4081 3.251245 TGCAAAAGCAAAAGCATCCATTG 59.749 39.130 0.00 0.00 31.05 2.82
4018 4083 3.071479 CTGCAAAAGCAAAAGCATCCAT 58.929 40.909 0.00 0.00 36.28 3.41
4021 4086 2.758009 TCCTGCAAAAGCAAAAGCATC 58.242 42.857 0.00 0.00 36.28 3.91
4022 4087 2.914695 TCCTGCAAAAGCAAAAGCAT 57.085 40.000 0.00 0.00 36.28 3.79
4031 4096 5.011023 ACAAAGAGGGTTTATCCTGCAAAAG 59.989 40.000 0.00 0.00 37.25 2.27
4032 4097 4.898861 ACAAAGAGGGTTTATCCTGCAAAA 59.101 37.500 0.00 0.00 37.25 2.44
4066 4131 3.326297 CCCCAGGTTTTAGCCATTTGAAA 59.674 43.478 0.00 0.00 0.00 2.69
4181 4246 5.053145 CACCTGTCCATAAGCTTCTACATC 58.947 45.833 0.00 0.00 0.00 3.06
4189 4254 0.035056 GTGGCACCTGTCCATAAGCT 60.035 55.000 6.29 0.00 35.81 3.74
4287 4356 2.502947 ACCAGCATTCTGTAGCATCTGA 59.497 45.455 0.00 0.00 38.66 3.27
4332 4401 1.599542 GGAATAACCTGATCAGTGCGC 59.400 52.381 21.11 0.00 35.41 6.09
4379 4448 8.588290 TTTATGGAAGCAAACATAACCACTAT 57.412 30.769 6.51 0.00 38.77 2.12
4401 4471 6.404844 CCGAGAAACTGCTCTCTACATCTTTA 60.405 42.308 5.99 0.00 39.85 1.85
4463 4538 5.004448 GCTAGCTCCCTCTGTAAAACTTTT 58.996 41.667 7.70 0.00 0.00 2.27
4487 4562 9.874205 AATTCATCTTTGTTCTTTTCAACTTCA 57.126 25.926 0.00 0.00 0.00 3.02
4526 4601 0.104487 TTGTTCGCGTTACCTGACCA 59.896 50.000 5.77 0.00 0.00 4.02
4545 4620 1.282157 GGTTGGCTCCCTCTGTAATGT 59.718 52.381 0.00 0.00 0.00 2.71
4546 4621 1.743772 CGGTTGGCTCCCTCTGTAATG 60.744 57.143 0.00 0.00 0.00 1.90
4627 4732 8.261522 AGTCCTCCTGAAAATAAATCAGACTAC 58.738 37.037 5.16 0.00 45.74 2.73
4658 4763 2.936498 GTTCCACCCAGTCACAATATCG 59.064 50.000 0.00 0.00 0.00 2.92
4752 4857 4.161377 ACTTTATTTGCAAACACCCACAGT 59.839 37.500 15.41 7.04 0.00 3.55
4756 4861 3.742640 GCCACTTTATTTGCAAACACCCA 60.743 43.478 15.41 0.00 0.00 4.51
4829 4935 5.163343 CCCAAGTCACCGAGAAATAGGATAA 60.163 44.000 0.00 0.00 0.00 1.75
4848 4954 2.420022 CGTGATAACCAGCTTTCCCAAG 59.580 50.000 0.00 0.00 0.00 3.61
4850 4956 1.339631 CCGTGATAACCAGCTTTCCCA 60.340 52.381 0.00 0.00 0.00 4.37
4907 5019 6.834451 TGGGTTTTTACTTCAAACATAGGTGA 59.166 34.615 0.00 0.00 36.07 4.02
4950 5062 5.181056 CACACAAAACACATGCCATAGTCTA 59.819 40.000 0.00 0.00 0.00 2.59
4959 5071 3.724422 GCACAAACACACAAAACACATGC 60.724 43.478 0.00 0.00 0.00 4.06
5005 5119 8.862325 TCAAGCTAGTCCAAAATTCATTAGAA 57.138 30.769 0.00 0.00 38.31 2.10
5084 5198 3.868369 GCAGCAGTGATTACACCTTACCA 60.868 47.826 0.00 0.00 46.99 3.25
5088 5202 2.566833 TGCAGCAGTGATTACACCTT 57.433 45.000 0.00 0.00 46.99 3.50
5089 5203 2.238144 AGATGCAGCAGTGATTACACCT 59.762 45.455 4.07 0.00 46.99 4.00
5090 5204 2.636830 AGATGCAGCAGTGATTACACC 58.363 47.619 4.07 0.00 46.99 4.16
5091 5205 3.438087 ACAAGATGCAGCAGTGATTACAC 59.562 43.478 4.07 0.00 46.24 2.90
5092 5206 3.678289 ACAAGATGCAGCAGTGATTACA 58.322 40.909 4.07 0.00 0.00 2.41
5093 5207 4.691860 AACAAGATGCAGCAGTGATTAC 57.308 40.909 4.07 0.00 0.00 1.89
5094 5208 4.761227 TCAAACAAGATGCAGCAGTGATTA 59.239 37.500 4.07 0.00 0.00 1.75
5095 5209 3.570975 TCAAACAAGATGCAGCAGTGATT 59.429 39.130 4.07 0.00 0.00 2.57
5119 5233 4.235079 TCCACATGCTAAATACTTGGCT 57.765 40.909 0.00 0.00 39.64 4.75
5180 5296 9.561069 GGGAGTATATTTTATCTGAGCAAAAGA 57.439 33.333 6.25 2.91 0.00 2.52
5181 5297 9.566432 AGGGAGTATATTTTATCTGAGCAAAAG 57.434 33.333 6.25 0.00 0.00 2.27
5182 5298 9.561069 GAGGGAGTATATTTTATCTGAGCAAAA 57.439 33.333 3.38 3.38 0.00 2.44
5183 5299 8.157476 GGAGGGAGTATATTTTATCTGAGCAAA 58.843 37.037 0.00 0.00 0.00 3.68
5184 5300 7.525526 CGGAGGGAGTATATTTTATCTGAGCAA 60.526 40.741 0.00 0.00 0.00 3.91
5185 5301 6.071334 CGGAGGGAGTATATTTTATCTGAGCA 60.071 42.308 0.00 0.00 0.00 4.26
5186 5302 6.153000 TCGGAGGGAGTATATTTTATCTGAGC 59.847 42.308 0.00 0.00 0.00 4.26
5187 5303 7.704578 TCGGAGGGAGTATATTTTATCTGAG 57.295 40.000 0.00 0.00 0.00 3.35
5188 5304 8.666129 AATCGGAGGGAGTATATTTTATCTGA 57.334 34.615 0.00 0.00 0.00 3.27
5189 5305 7.982354 GGAATCGGAGGGAGTATATTTTATCTG 59.018 40.741 0.00 0.00 0.00 2.90
5190 5306 7.901861 AGGAATCGGAGGGAGTATATTTTATCT 59.098 37.037 0.00 0.00 0.00 1.98
5191 5307 8.080363 AGGAATCGGAGGGAGTATATTTTATC 57.920 38.462 0.00 0.00 0.00 1.75
5192 5308 9.556772 TTAGGAATCGGAGGGAGTATATTTTAT 57.443 33.333 0.00 0.00 0.00 1.40
5193 5309 8.961293 TTAGGAATCGGAGGGAGTATATTTTA 57.039 34.615 0.00 0.00 0.00 1.52
5194 5310 7.867160 TTAGGAATCGGAGGGAGTATATTTT 57.133 36.000 0.00 0.00 0.00 1.82
5195 5311 7.867160 TTTAGGAATCGGAGGGAGTATATTT 57.133 36.000 0.00 0.00 0.00 1.40
5196 5312 7.092846 CCATTTAGGAATCGGAGGGAGTATATT 60.093 40.741 0.00 0.00 41.22 1.28
5197 5313 6.384305 CCATTTAGGAATCGGAGGGAGTATAT 59.616 42.308 0.00 0.00 41.22 0.86
5198 5314 5.720041 CCATTTAGGAATCGGAGGGAGTATA 59.280 44.000 0.00 0.00 41.22 1.47
5199 5315 4.532521 CCATTTAGGAATCGGAGGGAGTAT 59.467 45.833 0.00 0.00 41.22 2.12
5200 5316 3.901844 CCATTTAGGAATCGGAGGGAGTA 59.098 47.826 0.00 0.00 41.22 2.59
5201 5317 2.706190 CCATTTAGGAATCGGAGGGAGT 59.294 50.000 0.00 0.00 41.22 3.85
5202 5318 2.039084 CCCATTTAGGAATCGGAGGGAG 59.961 54.545 0.00 0.00 41.22 4.30
5203 5319 2.054799 CCCATTTAGGAATCGGAGGGA 58.945 52.381 0.00 0.00 41.22 4.20
5204 5320 2.054799 TCCCATTTAGGAATCGGAGGG 58.945 52.381 0.00 0.00 41.22 4.30
5205 5321 5.013183 ACTTATCCCATTTAGGAATCGGAGG 59.987 44.000 0.00 0.00 36.23 4.30
5206 5322 6.115448 ACTTATCCCATTTAGGAATCGGAG 57.885 41.667 0.00 0.00 36.23 4.63
5207 5323 7.808279 ATACTTATCCCATTTAGGAATCGGA 57.192 36.000 0.00 0.00 40.04 4.55
5219 5335 9.672673 CGAGGATGAAAAATATACTTATCCCAT 57.327 33.333 0.00 0.00 34.55 4.00
5273 5390 5.245075 ACTTTTGGTGGTTTTGAAGTTGAGA 59.755 36.000 0.00 0.00 0.00 3.27
5281 5398 3.445805 GGACTGACTTTTGGTGGTTTTGA 59.554 43.478 0.00 0.00 0.00 2.69
5341 5458 7.668469 AGGGACGAAAAGTATCTGGTTTAAATT 59.332 33.333 0.00 0.00 0.00 1.82
5351 5468 5.589192 CGTTATGAGGGACGAAAAGTATCT 58.411 41.667 0.00 0.00 41.53 1.98
5384 5501 7.849322 AACAGGGTCCAAGTTACAATAAAAT 57.151 32.000 0.00 0.00 0.00 1.82
5394 5512 4.285863 TCAATCAAAACAGGGTCCAAGTT 58.714 39.130 0.00 0.00 0.00 2.66
5421 5541 2.100584 GTCAAAACCAGTCAACATGGCA 59.899 45.455 0.00 0.00 41.87 4.92
5426 5546 1.748493 GGCAGTCAAAACCAGTCAACA 59.252 47.619 0.00 0.00 0.00 3.33
5495 5628 5.294552 ACTTTCCTTTTCTCTTGTTCTCACG 59.705 40.000 0.00 0.00 0.00 4.35
5531 5668 6.183360 AACTATGTTCAGTTCACACACAAGTG 60.183 38.462 0.00 0.00 41.98 3.16
5623 5779 6.759497 AACTAAATTGGGTTCAGACTATGC 57.241 37.500 0.00 0.00 0.00 3.14
5647 5803 9.099454 GGTCGAGAATATGTTCAGACTATTTTT 57.901 33.333 21.03 0.00 40.71 1.94
5691 5847 8.947115 CCTTTCCCATTTAGTACTTTGTTAGAG 58.053 37.037 0.00 0.00 0.00 2.43
5695 5851 6.616577 TCCCTTTCCCATTTAGTACTTTGTT 58.383 36.000 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.