Multiple sequence alignment - TraesCS3B01G290400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G290400 chr3B 100.000 6413 0 0 604 7016 466104647 466098235 0.000000e+00 11843.0
1 TraesCS3B01G290400 chr3B 100.000 159 0 0 1 159 466105250 466105092 1.910000e-75 294.0
2 TraesCS3B01G290400 chr3B 87.121 132 17 0 6075 6206 556673532 556673663 4.380000e-32 150.0
3 TraesCS3B01G290400 chr3D 95.321 4125 152 20 1934 6036 360043276 360039171 0.000000e+00 6510.0
4 TraesCS3B01G290400 chr3D 90.924 617 35 14 1331 1947 360046462 360045867 0.000000e+00 809.0
5 TraesCS3B01G290400 chr3D 87.248 745 47 17 604 1334 360047264 360046554 0.000000e+00 806.0
6 TraesCS3B01G290400 chr3D 86.059 538 46 12 6503 7015 360038363 360037830 1.030000e-152 551.0
7 TraesCS3B01G290400 chr3D 94.737 152 7 1 6055 6205 360039184 360039033 1.180000e-57 235.0
8 TraesCS3B01G290400 chr3D 93.182 132 8 1 6388 6519 360038508 360038378 7.180000e-45 193.0
9 TraesCS3B01G290400 chr3D 93.976 83 5 0 1 83 360047424 360047342 7.390000e-25 126.0
10 TraesCS3B01G290400 chr3D 85.217 115 16 1 6414 6527 31579082 31579196 4.450000e-22 117.0
11 TraesCS3B01G290400 chr3A 93.121 2951 117 31 3003 5916 479476459 479473558 0.000000e+00 4246.0
12 TraesCS3B01G290400 chr3A 94.599 1185 53 4 1800 2979 479477632 479476454 0.000000e+00 1823.0
13 TraesCS3B01G290400 chr3A 91.350 1133 56 18 695 1801 479480047 479478931 0.000000e+00 1511.0
14 TraesCS3B01G290400 chr3A 90.647 139 13 0 2814 2952 479471236 479471374 1.200000e-42 185.0
15 TraesCS3B01G290400 chr3A 85.890 163 11 2 1 159 479480346 479480192 5.630000e-36 163.0
16 TraesCS3B01G290400 chr3A 94.937 79 1 1 604 682 479480167 479480092 3.440000e-23 121.0
17 TraesCS3B01G290400 chr5B 89.394 132 14 0 6075 6206 467525769 467525900 4.350000e-37 167.0
18 TraesCS3B01G290400 chr5B 92.308 39 3 0 6345 6383 89235766 89235728 1.000000e-03 56.5
19 TraesCS3B01G290400 chr6A 87.121 132 17 0 6075 6206 373133919 373133788 4.380000e-32 150.0
20 TraesCS3B01G290400 chr6A 85.217 115 16 1 6414 6527 87212523 87212409 4.450000e-22 117.0
21 TraesCS3B01G290400 chr6A 82.278 79 3 3 6316 6383 412363250 412363328 2.730000e-04 58.4
22 TraesCS3B01G290400 chr2B 87.121 132 17 0 6075 6206 553630885 553631016 4.380000e-32 150.0
23 TraesCS3B01G290400 chr7B 86.260 131 18 0 6076 6206 40261352 40261482 7.340000e-30 143.0
24 TraesCS3B01G290400 chr7B 85.217 115 16 1 6414 6527 323211793 323211679 4.450000e-22 117.0
25 TraesCS3B01G290400 chr7A 86.239 109 14 1 6414 6521 106672339 106672447 4.450000e-22 117.0
26 TraesCS3B01G290400 chr1D 85.849 106 15 0 6414 6519 155963654 155963759 5.750000e-21 113.0
27 TraesCS3B01G290400 chr7D 85.321 109 15 1 6414 6521 503785781 503785889 2.070000e-20 111.0
28 TraesCS3B01G290400 chr4B 77.381 168 34 4 6850 7015 316817789 316817954 5.790000e-16 97.1
29 TraesCS3B01G290400 chr4B 77.160 162 35 2 6853 7013 83173020 83173180 7.490000e-15 93.5
30 TraesCS3B01G290400 chr4B 77.439 164 31 6 6853 7013 348320674 348320514 7.490000e-15 93.5
31 TraesCS3B01G290400 chr4B 76.829 164 32 6 6853 7013 348327825 348327665 3.490000e-13 87.9
32 TraesCS3B01G290400 chr4B 75.758 165 34 5 6853 7014 317524468 317524307 2.100000e-10 78.7
33 TraesCS3B01G290400 chr4B 74.706 170 38 5 6846 7013 296465087 296464921 3.510000e-08 71.3
34 TraesCS3B01G290400 chr1B 76.829 164 32 5 6853 7013 204116381 204116221 3.490000e-13 87.9
35 TraesCS3B01G290400 chr6B 75.472 159 33 5 6858 7013 318768139 318767984 9.760000e-09 73.1
36 TraesCS3B01G290400 chr6D 81.250 80 3 4 6316 6383 303620268 303620347 4.000000e-03 54.7
37 TraesCS3B01G290400 chr5D 100.000 29 0 0 6355 6383 80374565 80374537 4.000000e-03 54.7
38 TraesCS3B01G290400 chr5A 100.000 29 0 0 6355 6383 76911439 76911411 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G290400 chr3B 466098235 466105250 7015 True 6068.500000 11843 100.000000 1 7016 2 chr3B.!!$R1 7015
1 TraesCS3B01G290400 chr3D 360037830 360047424 9594 True 1318.571429 6510 91.635286 1 7015 7 chr3D.!!$R1 7014
2 TraesCS3B01G290400 chr3A 479473558 479480346 6788 True 1572.800000 4246 91.979400 1 5916 5 chr3A.!!$R1 5915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
747 786 0.246374 CGATTCGACGCGTGAAACTG 60.246 55.000 20.70 10.73 31.75 3.16 F
781 828 0.517316 GACCGGTAGCTGCAAAGTTG 59.483 55.000 7.34 0.00 0.00 3.16 F
1285 1355 0.687354 AACTGGAATGCTGAGTCCGT 59.313 50.000 0.00 0.00 39.36 4.69 F
1287 1357 1.204941 ACTGGAATGCTGAGTCCGTAC 59.795 52.381 0.00 0.00 39.36 3.67 F
1288 1358 1.478510 CTGGAATGCTGAGTCCGTACT 59.521 52.381 0.00 0.00 39.36 2.73 F
2380 6462 2.100197 TGATCACTACTCCAGTTCCCG 58.900 52.381 0.00 0.00 34.26 5.14 F
3583 7666 0.534412 AGCAGAGTAGAAGCGCATGT 59.466 50.000 11.47 0.00 0.00 3.21 F
4736 8819 0.398318 GGTGGTTCTGCTGAGACCTT 59.602 55.000 18.54 0.00 0.00 3.50 F
5444 9540 0.178955 TTGTCGGTGAGGGAGGTACA 60.179 55.000 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2537 6619 2.368221 TCAGTTTGGGGATGCCAAAAAG 59.632 45.455 7.49 4.06 38.61 2.27 R
2676 6758 4.314121 AGACAGAGCTTGACAAGATGAAC 58.686 43.478 19.51 12.03 0.00 3.18 R
3203 7286 2.025981 TGCCTTCTCCATATGCAACAGT 60.026 45.455 0.00 0.00 0.00 3.55 R
3239 7322 2.485426 TCAAGCAAGCTACTTCACATGC 59.515 45.455 0.00 0.00 0.00 4.06 R
3287 7370 7.892778 TTCAAAAGTATGTTACTATGTCGCA 57.107 32.000 0.00 0.00 38.26 5.10 R
3773 7856 0.541392 TGTGTCTGTTGGTGAGCACT 59.459 50.000 0.16 0.00 0.00 4.40 R
4764 8847 0.478072 AGTGCACATCCCTGGTTGAA 59.522 50.000 21.04 0.00 0.00 2.69 R
5604 9701 0.110486 GCTTTGGAGTTGGGACCTCA 59.890 55.000 0.00 0.00 0.00 3.86 R
6764 11339 0.240145 CGACTAGTCAAGTGACCGCA 59.760 55.000 22.37 0.00 45.85 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.801873 GATTTTACCTTTTAATTGAGCAGCATA 57.198 29.630 0.00 0.00 0.00 3.14
51 56 1.521764 TACAGGCCATCCATCCATGT 58.478 50.000 5.01 0.00 33.74 3.21
54 59 0.928505 AGGCCATCCATCCATGTTCA 59.071 50.000 5.01 0.00 33.74 3.18
95 100 2.439156 GGCTGCTACTTGCCCAGG 60.439 66.667 0.00 0.00 43.11 4.45
99 104 1.957113 GCTGCTACTTGCCCAGGAAAT 60.957 52.381 0.00 0.00 42.00 2.17
105 110 3.252554 ACTTGCCCAGGAAATTGGTTA 57.747 42.857 0.00 0.00 36.45 2.85
106 111 3.165071 ACTTGCCCAGGAAATTGGTTAG 58.835 45.455 0.00 0.00 36.45 2.34
107 112 2.230130 TGCCCAGGAAATTGGTTAGG 57.770 50.000 0.00 0.00 36.45 2.69
108 113 0.824109 GCCCAGGAAATTGGTTAGGC 59.176 55.000 0.00 0.00 36.45 3.93
109 114 1.619704 GCCCAGGAAATTGGTTAGGCT 60.620 52.381 0.00 0.00 36.45 4.58
110 115 2.357777 GCCCAGGAAATTGGTTAGGCTA 60.358 50.000 0.00 0.00 36.45 3.93
148 153 3.564027 GGCATCGGCACTGTACGC 61.564 66.667 0.00 0.00 43.71 4.42
682 687 3.001838 GGAACCAACAAACAAAATTCGGC 59.998 43.478 0.00 0.00 0.00 5.54
684 689 2.169561 ACCAACAAACAAAATTCGGCCT 59.830 40.909 0.00 0.00 0.00 5.19
685 690 3.385111 ACCAACAAACAAAATTCGGCCTA 59.615 39.130 0.00 0.00 0.00 3.93
686 691 3.738791 CCAACAAACAAAATTCGGCCTAC 59.261 43.478 0.00 0.00 0.00 3.18
687 692 4.500716 CCAACAAACAAAATTCGGCCTACT 60.501 41.667 0.00 0.00 0.00 2.57
689 694 4.616953 ACAAACAAAATTCGGCCTACTTG 58.383 39.130 0.00 0.00 0.00 3.16
690 695 3.934457 AACAAAATTCGGCCTACTTGG 57.066 42.857 0.00 0.00 39.35 3.61
691 696 3.149005 ACAAAATTCGGCCTACTTGGA 57.851 42.857 0.00 0.00 38.35 3.53
694 699 4.526650 ACAAAATTCGGCCTACTTGGATTT 59.473 37.500 0.00 0.00 38.35 2.17
701 740 2.656002 GCCTACTTGGATTTTCTCCCC 58.344 52.381 0.00 0.00 44.23 4.81
745 784 0.431984 TTCGATTCGACGCGTGAAAC 59.568 50.000 20.70 17.50 34.89 2.78
747 786 0.246374 CGATTCGACGCGTGAAACTG 60.246 55.000 20.70 10.73 31.75 3.16
758 800 3.581755 GCGTGAAACTGTAGTACATGGA 58.418 45.455 2.82 0.00 31.75 3.41
759 801 3.367025 GCGTGAAACTGTAGTACATGGAC 59.633 47.826 0.00 0.00 31.75 4.02
781 828 0.517316 GACCGGTAGCTGCAAAGTTG 59.483 55.000 7.34 0.00 0.00 3.16
783 830 1.210155 CGGTAGCTGCAAAGTTGGC 59.790 57.895 3.61 0.00 0.00 4.52
787 834 1.086696 TAGCTGCAAAGTTGGCGATC 58.913 50.000 1.02 0.00 0.00 3.69
798 845 0.958382 TTGGCGATCTTCCAAACGGG 60.958 55.000 12.24 0.00 40.35 5.28
818 869 4.051922 GGGCAGACGTATTATCTGAACTG 58.948 47.826 6.19 0.00 45.46 3.16
826 877 6.216569 ACGTATTATCTGAACTGCGATTGAT 58.783 36.000 0.00 0.00 0.00 2.57
830 881 6.834959 TTATCTGAACTGCGATTGATCTTC 57.165 37.500 0.00 0.00 0.00 2.87
844 909 3.141398 TGATCTTCACACAACTGAAGCC 58.859 45.455 4.37 0.88 44.73 4.35
845 910 3.181451 TGATCTTCACACAACTGAAGCCT 60.181 43.478 4.37 0.00 44.73 4.58
846 911 2.564771 TCTTCACACAACTGAAGCCTG 58.435 47.619 4.37 0.00 44.73 4.85
847 912 2.170397 TCTTCACACAACTGAAGCCTGA 59.830 45.455 4.37 0.00 44.73 3.86
848 913 2.708216 TCACACAACTGAAGCCTGAA 57.292 45.000 0.00 0.00 0.00 3.02
849 914 2.564771 TCACACAACTGAAGCCTGAAG 58.435 47.619 0.00 0.00 0.00 3.02
850 915 1.002033 CACACAACTGAAGCCTGAAGC 60.002 52.381 0.00 0.00 44.25 3.86
887 952 1.805945 GCAGGGCGTTGACGTAGAG 60.806 63.158 5.36 0.00 42.22 2.43
891 956 1.674962 AGGGCGTTGACGTAGAGATAC 59.325 52.381 5.36 0.00 42.22 2.24
894 959 1.063174 GCGTTGACGTAGAGATACGGT 59.937 52.381 11.94 0.00 46.68 4.83
899 964 5.397326 GTTGACGTAGAGATACGGTTTTCT 58.603 41.667 11.94 0.00 46.68 2.52
905 970 6.372659 ACGTAGAGATACGGTTTTCTGTCTTA 59.627 38.462 11.94 0.00 46.68 2.10
910 976 6.396450 AGATACGGTTTTCTGTCTTAAGGAC 58.604 40.000 1.85 0.67 44.70 3.85
1272 1342 2.547218 CGTTCTTCTTCCGGAAACTGGA 60.547 50.000 19.39 9.13 33.07 3.86
1283 1353 2.087646 GGAAACTGGAATGCTGAGTCC 58.912 52.381 0.00 0.00 36.83 3.85
1284 1354 1.734465 GAAACTGGAATGCTGAGTCCG 59.266 52.381 0.00 0.00 39.36 4.79
1285 1355 0.687354 AACTGGAATGCTGAGTCCGT 59.313 50.000 0.00 0.00 39.36 4.69
1286 1356 1.557099 ACTGGAATGCTGAGTCCGTA 58.443 50.000 0.00 0.00 39.36 4.02
1287 1357 1.204941 ACTGGAATGCTGAGTCCGTAC 59.795 52.381 0.00 0.00 39.36 3.67
1288 1358 1.478510 CTGGAATGCTGAGTCCGTACT 59.521 52.381 0.00 0.00 39.36 2.73
1373 1538 3.374988 TGCGATTCCAAAGATTGCAGTAG 59.625 43.478 0.00 0.00 0.00 2.57
1397 1569 5.106475 GGTCTCGCCAATCTCTACTACATAG 60.106 48.000 0.00 0.00 37.17 2.23
1402 1574 6.030849 CGCCAATCTCTACTACATAGTATGC 58.969 44.000 10.16 0.00 38.06 3.14
1413 1585 4.368565 ACATAGTATGCTCGGGTCTAGA 57.631 45.455 10.16 0.00 0.00 2.43
1416 1588 3.799432 AGTATGCTCGGGTCTAGAGAT 57.201 47.619 0.00 0.00 37.93 2.75
1424 1596 4.201990 GCTCGGGTCTAGAGATCGTAAAAA 60.202 45.833 0.00 0.00 37.93 1.94
1509 1682 9.890629 TGCACAGTTTATTTCTAGAATACTCAT 57.109 29.630 5.89 0.00 0.00 2.90
1519 1692 8.484641 TTTCTAGAATACTCATCACTGCAAAG 57.515 34.615 5.89 0.00 0.00 2.77
1520 1693 7.410120 TCTAGAATACTCATCACTGCAAAGA 57.590 36.000 0.00 0.00 0.00 2.52
1867 3341 4.488770 ACTTGTACCAAAACCCCATGATT 58.511 39.130 0.00 0.00 0.00 2.57
1968 6050 6.761242 ACAAGCTTTTCCTTCAAATAACAACC 59.239 34.615 0.00 0.00 0.00 3.77
2011 6093 4.230502 ACATAAACCATTCCCACTCAGGAT 59.769 41.667 0.00 0.00 41.22 3.24
2012 6094 3.833559 AAACCATTCCCACTCAGGATT 57.166 42.857 0.00 0.00 41.22 3.01
2075 6157 7.825331 TGTTTGTTGTATCCAGGTTATTTCA 57.175 32.000 0.00 0.00 0.00 2.69
2267 6349 3.064900 AGCTTCACATTCTCCAAGGAC 57.935 47.619 0.00 0.00 0.00 3.85
2354 6436 4.154737 TCACAGCTGAGTTCATTACAATGC 59.845 41.667 23.35 0.00 36.36 3.56
2370 6452 7.609760 TTACAATGCGAAATTGATCACTACT 57.390 32.000 15.66 0.00 33.51 2.57
2380 6462 2.100197 TGATCACTACTCCAGTTCCCG 58.900 52.381 0.00 0.00 34.26 5.14
2537 6619 9.579768 CACTAATATATGTTCTGTATCTGGCTC 57.420 37.037 0.00 0.00 0.00 4.70
2676 6758 6.215121 TGATGGCAAACTACAAAACATTGAG 58.785 36.000 0.00 0.00 0.00 3.02
2683 6765 7.649306 GCAAACTACAAAACATTGAGTTCATCT 59.351 33.333 0.00 0.00 40.26 2.90
2741 6823 5.336690 CCCATTGCTTTAATTACACTGCACT 60.337 40.000 0.00 0.00 0.00 4.40
2742 6824 5.574055 CCATTGCTTTAATTACACTGCACTG 59.426 40.000 0.00 0.00 33.13 3.66
2812 6895 4.199310 ACAATCCGGGTGAGAAATATGTG 58.801 43.478 12.37 0.00 0.00 3.21
2821 6904 5.946377 GGGTGAGAAATATGTGAAGAAACCT 59.054 40.000 0.00 0.00 0.00 3.50
2915 6998 4.800993 CGACTCCAAGATCAACAGTGATAC 59.199 45.833 0.00 0.00 44.83 2.24
2938 7021 5.517770 ACACAGTGTTTCGACTACTTGTAAC 59.482 40.000 0.00 0.00 0.00 2.50
2942 7025 6.419710 CAGTGTTTCGACTACTTGTAACATGA 59.580 38.462 0.00 0.00 30.39 3.07
2976 7059 7.591006 AAATAGGTCACGTGTACATGTTTAG 57.409 36.000 18.15 7.76 0.00 1.85
2986 7069 8.839914 CACGTGTACATGTTTAGATTTTGATTG 58.160 33.333 18.15 0.00 0.00 2.67
3019 7102 9.703892 AGCAAAGTATCAGATGTTATCTATCAC 57.296 33.333 0.00 0.00 37.58 3.06
3025 7108 6.338214 TCAGATGTTATCTATCACTGAGGC 57.662 41.667 0.00 0.00 37.58 4.70
3041 7124 7.326454 TCACTGAGGCATGATATATTTCTAGC 58.674 38.462 0.00 0.00 0.00 3.42
3199 7282 6.577103 TCAGCTTGTAGATCATAAAGTCTGG 58.423 40.000 16.28 6.98 31.03 3.86
3203 7286 8.540388 AGCTTGTAGATCATAAAGTCTGGTTTA 58.460 33.333 0.00 0.00 0.00 2.01
3239 7322 3.370978 AGAAGGCAATCACACGTTAATCG 59.629 43.478 0.00 0.00 46.00 3.34
3289 7372 2.781945 GCATAGTTGCCCTGTAATGC 57.218 50.000 0.00 0.00 43.38 3.56
3309 7392 9.632969 GTAATGCGACATAGTAACATACTTTTG 57.367 33.333 0.00 0.00 40.14 2.44
3347 7430 7.933577 TGAGAAGAACAATGTAGAAGTTGTGAT 59.066 33.333 0.00 0.00 38.47 3.06
3359 7442 6.798315 AGAAGTTGTGATGAACTGATGAAG 57.202 37.500 0.00 0.00 36.28 3.02
3398 7481 5.527951 TGTTTTTGAGGTGTCAATGCATAC 58.472 37.500 0.00 0.00 42.41 2.39
3453 7536 6.849588 TGGTAAAAGACTAAAAGGAACGAC 57.150 37.500 0.00 0.00 0.00 4.34
3482 7565 2.288666 AGCTCTTTGTCGTGCAAGAAA 58.711 42.857 3.20 0.00 38.47 2.52
3483 7566 2.880890 AGCTCTTTGTCGTGCAAGAAAT 59.119 40.909 3.20 0.00 38.47 2.17
3484 7567 3.316308 AGCTCTTTGTCGTGCAAGAAATT 59.684 39.130 3.20 0.00 38.47 1.82
3485 7568 4.515191 AGCTCTTTGTCGTGCAAGAAATTA 59.485 37.500 3.20 0.00 38.47 1.40
3486 7569 5.008613 AGCTCTTTGTCGTGCAAGAAATTAA 59.991 36.000 3.20 0.00 38.47 1.40
3495 7578 6.743172 GTCGTGCAAGAAATTAAGAAAGATCC 59.257 38.462 3.20 0.00 0.00 3.36
3583 7666 0.534412 AGCAGAGTAGAAGCGCATGT 59.466 50.000 11.47 0.00 0.00 3.21
3773 7856 1.409251 ATGCCTTGCCAACTGCCAAA 61.409 50.000 0.00 0.00 40.16 3.28
3890 7973 7.714377 ACTGATAAATAGAAGCTGTCAATCCAG 59.286 37.037 0.00 0.00 35.49 3.86
4040 8123 7.335924 GTGTCAAATACCCTGTTCAGCTTATTA 59.664 37.037 0.00 0.00 0.00 0.98
4096 8179 5.820131 CTTGTCTAGCACATTTGTCAACAA 58.180 37.500 0.00 0.00 33.90 2.83
4097 8180 5.168526 TGTCTAGCACATTTGTCAACAAC 57.831 39.130 0.00 0.00 35.28 3.32
4289 8372 5.507149 GCCTTCAACATTTGTCATGTACACA 60.507 40.000 0.00 0.00 38.00 3.72
4290 8373 6.502652 CCTTCAACATTTGTCATGTACACAA 58.497 36.000 0.00 0.00 38.00 3.33
4340 8423 3.127548 CACTAACAATAGCCTGCCTTGTG 59.872 47.826 8.03 1.62 33.60 3.33
4377 8460 0.756442 TGCAGAAGGGCTTTGCTTGT 60.756 50.000 0.00 0.00 38.60 3.16
4393 8476 1.878088 CTTGTCAAGCTCATGTGCACT 59.122 47.619 20.92 5.62 34.99 4.40
4435 8518 8.539544 TGATGTGAATATAGAAGGTGAAGAACA 58.460 33.333 0.00 0.00 0.00 3.18
4454 8537 1.005394 CACCCGCTGTAAAGTCGGT 60.005 57.895 12.77 2.00 41.46 4.69
4506 8589 3.582208 GGCTGGAGGATGATTGAGAGTAT 59.418 47.826 0.00 0.00 0.00 2.12
4682 8765 3.147629 GCTAGGATTCATGAGCTTGCAT 58.852 45.455 0.00 0.00 32.04 3.96
4683 8766 3.188873 GCTAGGATTCATGAGCTTGCATC 59.811 47.826 0.00 0.00 32.04 3.91
4687 8770 3.251245 GGATTCATGAGCTTGCATCTCTG 59.749 47.826 14.94 11.29 0.00 3.35
4689 8772 3.840124 TCATGAGCTTGCATCTCTGAT 57.160 42.857 14.94 2.20 0.00 2.90
4696 8779 1.404391 CTTGCATCTCTGATGTTGGGC 59.596 52.381 8.98 0.00 0.00 5.36
4733 8816 1.271054 ACATGGTGGTTCTGCTGAGAC 60.271 52.381 0.00 0.00 0.00 3.36
4736 8819 0.398318 GGTGGTTCTGCTGAGACCTT 59.602 55.000 18.54 0.00 0.00 3.50
4764 8847 2.420129 GGAAGCGGTAACCATCAGACAT 60.420 50.000 5.99 0.00 0.00 3.06
4779 8862 2.751259 CAGACATTCAACCAGGGATGTG 59.249 50.000 5.14 0.00 0.00 3.21
4911 8994 1.200948 GCAACTGATGAAAGGGACAGC 59.799 52.381 0.00 0.00 34.25 4.40
4914 8997 3.446442 ACTGATGAAAGGGACAGCAAT 57.554 42.857 0.00 0.00 33.40 3.56
4936 9019 1.947456 GTGGGCATATTCGTTCCTTCC 59.053 52.381 0.00 0.00 0.00 3.46
4939 9022 3.288092 GGGCATATTCGTTCCTTCCTTT 58.712 45.455 0.00 0.00 0.00 3.11
4952 9035 4.127171 TCCTTCCTTTTCTGACACTTTCG 58.873 43.478 0.00 0.00 0.00 3.46
4954 9037 4.024809 CCTTCCTTTTCTGACACTTTCGTC 60.025 45.833 0.00 0.00 36.40 4.20
5002 9085 6.266786 AGGTTCATCTCCAAAATTAAAACGGT 59.733 34.615 0.00 0.00 0.00 4.83
5030 9113 5.304614 GCTATACTGTGAATTCCCACCTCTA 59.695 44.000 2.27 0.00 36.26 2.43
5034 9117 2.912956 TGTGAATTCCCACCTCTAGCTT 59.087 45.455 2.27 0.00 36.26 3.74
5037 9122 4.406003 GTGAATTCCCACCTCTAGCTTCTA 59.594 45.833 2.27 0.00 0.00 2.10
5039 9124 5.667626 TGAATTCCCACCTCTAGCTTCTATT 59.332 40.000 2.27 0.00 0.00 1.73
5045 9130 4.336713 CCACCTCTAGCTTCTATTTTTGCC 59.663 45.833 0.00 0.00 0.00 4.52
5054 9139 2.661718 TCTATTTTTGCCGGGGATTCC 58.338 47.619 2.18 0.00 0.00 3.01
5055 9140 2.243736 TCTATTTTTGCCGGGGATTCCT 59.756 45.455 2.18 0.00 0.00 3.36
5056 9141 1.485124 ATTTTTGCCGGGGATTCCTC 58.515 50.000 2.18 0.00 0.00 3.71
5058 9143 2.830186 TTTTGCCGGGGATTCCTCCG 62.830 60.000 19.82 19.82 43.11 4.63
5072 9161 2.474112 TCCTCCGGCCTTTAGTAACAT 58.526 47.619 0.00 0.00 0.00 2.71
5089 9178 7.921786 AGTAACATTGCAAACTTCTATGCTA 57.078 32.000 1.71 0.00 42.97 3.49
5099 9188 6.238103 GCAAACTTCTATGCTAAGCGATTGTA 60.238 38.462 0.00 0.00 39.46 2.41
5132 9221 2.602257 TCATTCTGTATGCTCCGGTG 57.398 50.000 0.00 0.00 34.06 4.94
5143 9232 1.141881 CTCCGGTGAAGGGTGATCG 59.858 63.158 0.00 0.00 0.00 3.69
5146 9235 1.589630 CGGTGAAGGGTGATCGTCA 59.410 57.895 0.00 0.00 0.00 4.35
5152 9241 4.504858 GTGAAGGGTGATCGTCATAGTTT 58.495 43.478 0.00 0.00 0.00 2.66
5174 9263 3.885484 CTGTGTTGTTGCAGGAGTAAG 57.115 47.619 0.00 0.00 0.00 2.34
5196 9285 2.281070 CACTGGCTCGCCACTTGT 60.281 61.111 6.52 0.77 41.89 3.16
5210 9299 1.227999 ACTTGTTGCACGTGCGCTAT 61.228 50.000 33.22 15.12 45.83 2.97
5269 9365 2.685897 GTGCAGGTACCAAGTTGACAAA 59.314 45.455 15.94 0.00 0.00 2.83
5270 9366 3.317993 GTGCAGGTACCAAGTTGACAAAT 59.682 43.478 15.94 0.00 0.00 2.32
5272 9368 3.568007 GCAGGTACCAAGTTGACAAATGA 59.432 43.478 15.94 0.00 0.00 2.57
5273 9369 4.556699 GCAGGTACCAAGTTGACAAATGAC 60.557 45.833 15.94 0.00 0.00 3.06
5274 9370 4.578516 CAGGTACCAAGTTGACAAATGACA 59.421 41.667 15.94 0.00 0.00 3.58
5275 9371 5.067153 CAGGTACCAAGTTGACAAATGACAA 59.933 40.000 15.94 0.00 0.00 3.18
5276 9372 5.833131 AGGTACCAAGTTGACAAATGACAAT 59.167 36.000 15.94 0.00 32.94 2.71
5277 9373 5.920273 GGTACCAAGTTGACAAATGACAATG 59.080 40.000 7.15 0.00 32.94 2.82
5278 9374 4.947645 ACCAAGTTGACAAATGACAATGG 58.052 39.130 3.87 13.16 36.57 3.16
5279 9375 3.742369 CCAAGTTGACAAATGACAATGGC 59.258 43.478 3.87 0.00 32.94 4.40
5280 9376 4.501915 CCAAGTTGACAAATGACAATGGCT 60.502 41.667 3.87 0.00 32.94 4.75
5281 9377 4.942761 AGTTGACAAATGACAATGGCTT 57.057 36.364 1.95 0.00 32.94 4.35
5313 9409 1.815003 CTGATCTTGCAAGTTGGTCCC 59.185 52.381 25.19 6.31 0.00 4.46
5444 9540 0.178955 TTGTCGGTGAGGGAGGTACA 60.179 55.000 0.00 0.00 0.00 2.90
5459 9555 1.463444 GGTACAATTGTGCCGACTGAC 59.537 52.381 26.87 11.87 40.82 3.51
5543 9639 2.027837 TGTATGGATCATGCGATCTGGG 60.028 50.000 0.00 0.00 46.30 4.45
5595 9692 3.560481 TCGTGCAGATTTTACGAAAACCA 59.440 39.130 0.00 0.00 42.99 3.67
5604 9701 9.463443 CAGATTTTACGAAAACCAGAAGATTTT 57.537 29.630 0.00 0.00 32.37 1.82
5709 9806 7.417911 CCTGTATCCAGAGTTTGTAGCTTCATA 60.418 40.741 0.00 0.00 41.50 2.15
5827 9948 5.221722 GGATGAACATAGCCTGGACAAGATA 60.222 44.000 0.00 0.00 0.00 1.98
5917 10045 5.671329 GCGACCAAACAGAATTATCAGTGTC 60.671 44.000 0.00 0.00 0.00 3.67
5925 10053 5.356190 ACAGAATTATCAGTGTCATTGCCAG 59.644 40.000 0.00 0.00 0.00 4.85
5927 10055 6.262496 CAGAATTATCAGTGTCATTGCCAGAT 59.738 38.462 0.00 0.00 0.00 2.90
5936 10064 1.203758 TCATTGCCAGATACGACACGT 59.796 47.619 1.91 1.91 44.35 4.49
5945 10073 3.076621 AGATACGACACGTACAAGGACA 58.923 45.455 6.17 0.00 45.07 4.02
5947 10075 1.843992 ACGACACGTACAAGGACAAC 58.156 50.000 0.00 0.00 38.73 3.32
5973 10101 7.095899 CGATAGCTGTACTCGTATGTTACTACA 60.096 40.741 0.00 0.00 38.95 2.74
5974 10102 6.939132 AGCTGTACTCGTATGTTACTACAT 57.061 37.500 0.00 0.00 46.49 2.29
5975 10103 6.726230 AGCTGTACTCGTATGTTACTACATG 58.274 40.000 1.22 0.00 44.56 3.21
5976 10104 6.318144 AGCTGTACTCGTATGTTACTACATGT 59.682 38.462 2.69 2.69 44.56 3.21
5977 10105 6.414109 GCTGTACTCGTATGTTACTACATGTG 59.586 42.308 9.11 0.93 44.56 3.21
6036 10169 5.983475 GATGTAATCAACTCTATGCAGCAC 58.017 41.667 0.00 0.00 44.70 4.40
6037 10170 4.191544 TGTAATCAACTCTATGCAGCACC 58.808 43.478 0.00 0.00 0.00 5.01
6038 10171 2.338577 ATCAACTCTATGCAGCACCC 57.661 50.000 0.00 0.00 0.00 4.61
6039 10172 1.279496 TCAACTCTATGCAGCACCCT 58.721 50.000 0.00 0.00 0.00 4.34
6040 10173 1.630369 TCAACTCTATGCAGCACCCTT 59.370 47.619 0.00 0.00 0.00 3.95
6041 10174 2.040278 TCAACTCTATGCAGCACCCTTT 59.960 45.455 0.00 0.00 0.00 3.11
6042 10175 2.821969 CAACTCTATGCAGCACCCTTTT 59.178 45.455 0.00 0.00 0.00 2.27
6043 10176 2.716217 ACTCTATGCAGCACCCTTTTC 58.284 47.619 0.00 0.00 0.00 2.29
6044 10177 1.667724 CTCTATGCAGCACCCTTTTCG 59.332 52.381 0.00 0.00 0.00 3.46
6045 10178 1.277842 TCTATGCAGCACCCTTTTCGA 59.722 47.619 0.00 0.00 0.00 3.71
6046 10179 2.083774 CTATGCAGCACCCTTTTCGAA 58.916 47.619 0.00 0.00 0.00 3.71
6047 10180 1.327303 ATGCAGCACCCTTTTCGAAA 58.673 45.000 6.47 6.47 0.00 3.46
6048 10181 1.107114 TGCAGCACCCTTTTCGAAAA 58.893 45.000 21.35 21.35 0.00 2.29
6049 10182 1.478510 TGCAGCACCCTTTTCGAAAAA 59.521 42.857 22.67 8.37 0.00 1.94
6050 10183 1.858458 GCAGCACCCTTTTCGAAAAAC 59.142 47.619 22.67 10.83 0.00 2.43
6051 10184 2.737039 GCAGCACCCTTTTCGAAAAACA 60.737 45.455 22.67 2.75 0.00 2.83
6052 10185 3.516615 CAGCACCCTTTTCGAAAAACAA 58.483 40.909 22.67 2.38 0.00 2.83
6053 10186 3.929610 CAGCACCCTTTTCGAAAAACAAA 59.070 39.130 22.67 2.00 0.00 2.83
6061 10194 7.543172 ACCCTTTTCGAAAAACAAAAACTCTAC 59.457 33.333 22.67 0.00 0.00 2.59
6068 10201 3.334272 AACAAAAACTCTACGCAGCAC 57.666 42.857 0.00 0.00 0.00 4.40
6106 10239 5.371176 TGGATATTTGTATTGGAGGGCTACA 59.629 40.000 0.00 0.00 0.00 2.74
6187 10321 3.951775 TGCTTGTTTGGTTGTTCACTT 57.048 38.095 0.00 0.00 0.00 3.16
6205 10339 7.884877 TGTTCACTTAATTGACTCATGGAATCT 59.115 33.333 0.00 0.00 0.00 2.40
6206 10340 8.734386 GTTCACTTAATTGACTCATGGAATCTT 58.266 33.333 0.00 0.00 0.00 2.40
6207 10341 8.272545 TCACTTAATTGACTCATGGAATCTTG 57.727 34.615 0.00 0.00 0.00 3.02
6220 10731 7.623630 TCATGGAATCTTGATCTGTGACTAAA 58.376 34.615 0.00 0.00 0.00 1.85
6332 10851 4.448720 TGTACTCCCTCTGATCCGAATA 57.551 45.455 0.00 0.00 0.00 1.75
6336 10855 5.283457 ACTCCCTCTGATCCGAATAAAAG 57.717 43.478 0.00 0.00 0.00 2.27
6338 10857 5.163395 ACTCCCTCTGATCCGAATAAAAGAC 60.163 44.000 0.00 0.00 0.00 3.01
6339 10858 4.051922 CCCTCTGATCCGAATAAAAGACG 58.948 47.826 0.00 0.00 0.00 4.18
6343 10862 2.607635 TGATCCGAATAAAAGACGCAGC 59.392 45.455 0.00 0.00 0.00 5.25
6344 10863 1.365699 TCCGAATAAAAGACGCAGCC 58.634 50.000 0.00 0.00 0.00 4.85
6345 10864 1.066430 TCCGAATAAAAGACGCAGCCT 60.066 47.619 0.00 0.00 0.00 4.58
6346 10865 1.327764 CCGAATAAAAGACGCAGCCTC 59.672 52.381 0.00 0.00 0.00 4.70
6347 10866 2.271800 CGAATAAAAGACGCAGCCTCT 58.728 47.619 0.00 0.00 0.00 3.69
6349 10868 4.051922 CGAATAAAAGACGCAGCCTCTAT 58.948 43.478 0.00 0.00 0.00 1.98
6350 10869 5.220381 CGAATAAAAGACGCAGCCTCTATA 58.780 41.667 0.00 0.00 0.00 1.31
6351 10870 5.117287 CGAATAAAAGACGCAGCCTCTATAC 59.883 44.000 0.00 0.00 0.00 1.47
6353 10872 4.408182 AAAAGACGCAGCCTCTATACAT 57.592 40.909 0.00 0.00 0.00 2.29
6355 10874 3.651803 AGACGCAGCCTCTATACATTC 57.348 47.619 0.00 0.00 0.00 2.67
6356 10875 2.297597 AGACGCAGCCTCTATACATTCC 59.702 50.000 0.00 0.00 0.00 3.01
6357 10876 1.000163 ACGCAGCCTCTATACATTCCG 60.000 52.381 0.00 0.00 0.00 4.30
6358 10877 1.269723 CGCAGCCTCTATACATTCCGA 59.730 52.381 0.00 0.00 0.00 4.55
6359 10878 2.288213 CGCAGCCTCTATACATTCCGAA 60.288 50.000 0.00 0.00 0.00 4.30
6360 10879 3.615110 CGCAGCCTCTATACATTCCGAAT 60.615 47.826 0.00 0.00 0.00 3.34
6361 10880 4.319177 GCAGCCTCTATACATTCCGAATT 58.681 43.478 0.00 0.00 0.00 2.17
6362 10881 5.479306 GCAGCCTCTATACATTCCGAATTA 58.521 41.667 0.00 0.00 0.00 1.40
6363 10882 5.932303 GCAGCCTCTATACATTCCGAATTAA 59.068 40.000 0.00 0.00 0.00 1.40
6364 10883 6.426937 GCAGCCTCTATACATTCCGAATTAAA 59.573 38.462 0.00 0.00 0.00 1.52
6365 10884 7.119846 GCAGCCTCTATACATTCCGAATTAAAT 59.880 37.037 0.00 0.00 0.00 1.40
6366 10885 8.446273 CAGCCTCTATACATTCCGAATTAAATG 58.554 37.037 0.00 6.27 38.54 2.32
6367 10886 8.375506 AGCCTCTATACATTCCGAATTAAATGA 58.624 33.333 12.26 1.17 36.57 2.57
6368 10887 8.443937 GCCTCTATACATTCCGAATTAAATGAC 58.556 37.037 12.26 0.00 36.57 3.06
6369 10888 8.648097 CCTCTATACATTCCGAATTAAATGACG 58.352 37.037 12.26 0.00 36.57 4.35
6370 10889 8.014322 TCTATACATTCCGAATTAAATGACGC 57.986 34.615 12.26 0.00 36.57 5.19
6371 10890 4.955925 ACATTCCGAATTAAATGACGCA 57.044 36.364 12.26 0.00 36.57 5.24
6372 10891 4.908736 ACATTCCGAATTAAATGACGCAG 58.091 39.130 12.26 0.00 36.57 5.18
6373 10892 3.398954 TTCCGAATTAAATGACGCAGC 57.601 42.857 0.00 0.00 0.00 5.25
6374 10893 1.668751 TCCGAATTAAATGACGCAGCC 59.331 47.619 0.00 0.00 0.00 4.85
6375 10894 1.670811 CCGAATTAAATGACGCAGCCT 59.329 47.619 0.00 0.00 0.00 4.58
6376 10895 2.286418 CCGAATTAAATGACGCAGCCTC 60.286 50.000 0.00 0.00 0.00 4.70
6377 10896 2.609459 CGAATTAAATGACGCAGCCTCT 59.391 45.455 0.00 0.00 0.00 3.69
6378 10897 3.802139 CGAATTAAATGACGCAGCCTCTA 59.198 43.478 0.00 0.00 0.00 2.43
6379 10898 4.449068 CGAATTAAATGACGCAGCCTCTAT 59.551 41.667 0.00 0.00 0.00 1.98
6380 10899 5.633601 CGAATTAAATGACGCAGCCTCTATA 59.366 40.000 0.00 0.00 0.00 1.31
6381 10900 6.400091 CGAATTAAATGACGCAGCCTCTATAC 60.400 42.308 0.00 0.00 0.00 1.47
6382 10901 3.819564 AAATGACGCAGCCTCTATACA 57.180 42.857 0.00 0.00 0.00 2.29
6383 10902 4.342862 AAATGACGCAGCCTCTATACAT 57.657 40.909 0.00 0.00 0.00 2.29
6384 10903 4.342862 AATGACGCAGCCTCTATACATT 57.657 40.909 0.00 0.00 0.00 2.71
6385 10904 5.468540 AATGACGCAGCCTCTATACATTA 57.531 39.130 0.00 0.00 0.00 1.90
6386 10905 4.238761 TGACGCAGCCTCTATACATTAC 57.761 45.455 0.00 0.00 0.00 1.89
6390 10909 5.611374 ACGCAGCCTCTATACATTACAATT 58.389 37.500 0.00 0.00 0.00 2.32
6396 10915 6.263168 AGCCTCTATACATTACAATTTGTGGC 59.737 38.462 12.30 11.27 32.80 5.01
6401 10920 9.845740 TCTATACATTACAATTTGTGGCTATGT 57.154 29.630 12.30 15.65 0.00 2.29
6410 10929 3.364460 TTGTGGCTATGTGGCTTATGT 57.636 42.857 0.00 0.00 42.34 2.29
6428 10947 7.012327 GGCTTATGTTTTGCTCTACATGTATCA 59.988 37.037 5.91 2.50 36.46 2.15
6429 10948 8.397906 GCTTATGTTTTGCTCTACATGTATCAA 58.602 33.333 5.91 8.37 36.46 2.57
6526 11076 7.430502 GCTCATCAATACACTTTTTAGCATCAC 59.569 37.037 0.00 0.00 0.00 3.06
6533 11083 6.500684 ACACTTTTTAGCATCACGAATCAT 57.499 33.333 0.00 0.00 0.00 2.45
6534 11084 6.317088 ACACTTTTTAGCATCACGAATCATG 58.683 36.000 0.00 0.00 0.00 3.07
6546 11096 0.179000 GAATCATGAGGCCGTCAGGT 59.821 55.000 13.90 0.05 39.07 4.00
6547 11097 0.179000 AATCATGAGGCCGTCAGGTC 59.821 55.000 13.90 0.00 44.17 3.85
6548 11098 0.977627 ATCATGAGGCCGTCAGGTCA 60.978 55.000 13.90 4.91 46.92 4.02
6549 11099 1.153489 CATGAGGCCGTCAGGTCAG 60.153 63.158 10.13 0.00 46.92 3.51
6550 11100 1.305297 ATGAGGCCGTCAGGTCAGA 60.305 57.895 10.13 0.00 46.92 3.27
6564 11117 1.464997 GGTCAGACGCCAGAATTTGAC 59.535 52.381 0.00 0.00 35.42 3.18
6578 11131 1.529744 TTTGACTCCCTTTGGGTCCT 58.470 50.000 2.25 0.00 44.74 3.85
6589 11142 3.877508 CCTTTGGGTCCTTCGTGATATTC 59.122 47.826 0.00 0.00 0.00 1.75
6598 11151 1.399714 TCGTGATATTCAGCTCCGGT 58.600 50.000 0.00 0.00 0.00 5.28
6599 11152 1.754803 TCGTGATATTCAGCTCCGGTT 59.245 47.619 0.00 0.00 0.00 4.44
6612 11166 1.279271 CTCCGGTTTGAGGTTGAGGAT 59.721 52.381 0.00 0.00 0.00 3.24
6627 11201 2.642171 AGGATGACCTTGGGTGTCTA 57.358 50.000 0.00 0.00 45.36 2.59
6670 11244 6.543831 ACAATGCTCAATTCATTAGGTCTACC 59.456 38.462 0.00 0.00 33.27 3.18
6674 11248 5.674525 CTCAATTCATTAGGTCTACCAGCA 58.325 41.667 1.26 0.00 38.89 4.41
6675 11249 5.428253 TCAATTCATTAGGTCTACCAGCAC 58.572 41.667 1.26 0.00 38.89 4.40
6710 11284 0.529378 CATTTGGGGTGCTTGAGCTC 59.471 55.000 6.82 6.82 42.66 4.09
6732 11307 6.208797 GCTCCACCTAAGGTTAAATTCTTTGT 59.791 38.462 0.00 0.00 31.02 2.83
6764 11339 5.221382 GCAATGCAAGATAGGATTTGGACAT 60.221 40.000 0.00 0.00 0.00 3.06
6765 11340 6.213677 CAATGCAAGATAGGATTTGGACATG 58.786 40.000 0.00 0.00 0.00 3.21
6768 11343 3.131709 AGATAGGATTTGGACATGCGG 57.868 47.619 0.00 0.00 0.00 5.69
6782 11357 2.263077 CATGCGGTCACTTGACTAGTC 58.737 52.381 16.32 16.32 44.20 2.59
6819 11394 3.041701 CCTTTGCTCGCTTTGCCA 58.958 55.556 0.00 0.00 0.00 4.92
6825 11400 1.443363 GCTCGCTTTGCCAAAGAGC 60.443 57.895 21.00 16.82 45.74 4.09
6837 11412 2.005451 CCAAAGAGCACAAGAGATCGG 58.995 52.381 0.00 0.00 0.00 4.18
6838 11413 2.354103 CCAAAGAGCACAAGAGATCGGA 60.354 50.000 0.00 0.00 0.00 4.55
6843 11418 1.895798 AGCACAAGAGATCGGAGTTCA 59.104 47.619 0.00 0.00 0.00 3.18
6893 11468 3.186283 TCCCCATGTACACTACACCAAT 58.814 45.455 0.00 0.00 42.23 3.16
6897 11472 4.324254 CCCATGTACACTACACCAATTCCT 60.324 45.833 0.00 0.00 42.23 3.36
6913 11488 0.687354 TCCTCAAGAGCCAAGTGGAC 59.313 55.000 0.18 0.00 37.39 4.02
6920 11495 2.551270 AGAGCCAAGTGGACCTATGAA 58.449 47.619 0.18 0.00 37.39 2.57
6937 11512 3.947841 AAAAAGCTCGCGCACGCA 61.948 55.556 18.45 1.60 42.06 5.24
6952 11527 1.805943 CACGCACCATTGAACATGAGA 59.194 47.619 0.00 0.00 0.00 3.27
6962 11537 6.095300 ACCATTGAACATGAGATTAATTCGCA 59.905 34.615 0.00 0.00 38.59 5.10
7015 11590 3.930848 GACATGGTTACTACCTCAAACGG 59.069 47.826 0.00 0.00 45.27 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.632835 AACATGGATGGATGGCCTGT 59.367 50.000 3.32 0.00 34.31 4.00
51 56 3.575805 ACTTGAAGCCTTTTCCCATGAA 58.424 40.909 0.00 0.00 0.00 2.57
54 59 2.037641 GCAACTTGAAGCCTTTTCCCAT 59.962 45.455 0.00 0.00 0.00 4.00
83 88 2.807676 ACCAATTTCCTGGGCAAGTAG 58.192 47.619 0.00 0.00 41.16 2.57
89 94 0.824109 GCCTAACCAATTTCCTGGGC 59.176 55.000 0.00 0.00 41.16 5.36
108 113 1.028905 ACGCTCCTCTTGCTAGCTAG 58.971 55.000 18.70 18.70 34.03 3.42
109 114 2.158798 TCTACGCTCCTCTTGCTAGCTA 60.159 50.000 17.23 7.59 34.03 3.32
110 115 1.028905 CTACGCTCCTCTTGCTAGCT 58.971 55.000 17.23 0.00 34.03 3.32
690 695 6.590234 ATTGTAACAACAGGGGAGAAAATC 57.410 37.500 0.00 0.00 0.00 2.17
691 696 6.994421 AATTGTAACAACAGGGGAGAAAAT 57.006 33.333 0.00 0.00 0.00 1.82
694 699 6.016943 CGTTTAATTGTAACAACAGGGGAGAA 60.017 38.462 6.22 0.00 0.00 2.87
745 784 3.428999 CCGGTCAAGTCCATGTACTACAG 60.429 52.174 0.00 0.00 0.00 2.74
747 786 2.494870 ACCGGTCAAGTCCATGTACTAC 59.505 50.000 0.00 0.00 0.00 2.73
758 800 0.107831 TTTGCAGCTACCGGTCAAGT 59.892 50.000 12.40 0.00 0.00 3.16
759 801 0.798776 CTTTGCAGCTACCGGTCAAG 59.201 55.000 12.40 4.82 0.00 3.02
781 828 2.761195 GCCCGTTTGGAAGATCGCC 61.761 63.158 1.14 1.14 37.49 5.54
783 830 0.391130 TCTGCCCGTTTGGAAGATCG 60.391 55.000 0.00 0.00 44.70 3.69
787 834 0.320073 TACGTCTGCCCGTTTGGAAG 60.320 55.000 0.00 0.00 41.97 3.46
798 845 3.180584 CGCAGTTCAGATAATACGTCTGC 59.819 47.826 8.11 8.11 42.17 4.26
818 869 3.433274 TCAGTTGTGTGAAGATCAATCGC 59.567 43.478 0.00 0.06 0.00 4.58
830 881 1.002033 GCTTCAGGCTTCAGTTGTGTG 60.002 52.381 0.00 0.00 38.06 3.82
844 909 1.269166 CGTACTTAGCGGTGCTTCAG 58.731 55.000 0.00 0.00 40.44 3.02
845 910 0.734942 GCGTACTTAGCGGTGCTTCA 60.735 55.000 0.00 0.00 40.44 3.02
846 911 1.419107 GGCGTACTTAGCGGTGCTTC 61.419 60.000 0.00 0.00 40.44 3.86
847 912 1.447314 GGCGTACTTAGCGGTGCTT 60.447 57.895 0.00 0.00 40.44 3.91
848 913 1.885163 AAGGCGTACTTAGCGGTGCT 61.885 55.000 0.00 0.00 43.41 4.40
849 914 1.419107 GAAGGCGTACTTAGCGGTGC 61.419 60.000 0.00 0.00 40.21 5.01
850 915 1.138047 CGAAGGCGTACTTAGCGGTG 61.138 60.000 0.00 0.00 40.21 4.94
851 916 1.138247 CGAAGGCGTACTTAGCGGT 59.862 57.895 0.00 0.00 40.21 5.68
852 917 2.228914 GCGAAGGCGTACTTAGCGG 61.229 63.158 10.16 0.00 45.54 5.52
853 918 3.296584 GCGAAGGCGTACTTAGCG 58.703 61.111 10.16 5.45 45.54 4.26
855 920 0.527817 CCCTGCGAAGGCGTACTTAG 60.528 60.000 2.84 0.00 44.10 2.18
887 952 6.644191 GTCCTTAAGACAGAAAACCGTATC 57.356 41.667 3.36 0.00 45.55 2.24
905 970 1.823610 GCTCTACGTAACCAGGTCCTT 59.176 52.381 0.00 0.00 0.00 3.36
910 976 1.067142 TGCAAGCTCTACGTAACCAGG 60.067 52.381 0.00 0.00 0.00 4.45
981 1051 3.931631 CTCCTCCCACAGCCCCTCA 62.932 68.421 0.00 0.00 0.00 3.86
1288 1358 0.251653 ACACAAGCTCCTCCTACGGA 60.252 55.000 0.00 0.00 0.00 4.69
1289 1359 1.471119 TACACAAGCTCCTCCTACGG 58.529 55.000 0.00 0.00 0.00 4.02
1373 1538 2.950309 TGTAGTAGAGATTGGCGAGACC 59.050 50.000 0.00 0.00 39.84 3.85
1397 1569 2.417239 CGATCTCTAGACCCGAGCATAC 59.583 54.545 0.00 0.00 0.00 2.39
1402 1574 5.496133 TTTTTACGATCTCTAGACCCGAG 57.504 43.478 9.72 0.00 0.00 4.63
1413 1585 6.934645 TGGACTCAAACTCATTTTTACGATCT 59.065 34.615 0.00 0.00 0.00 2.75
1416 1588 5.049680 GCTGGACTCAAACTCATTTTTACGA 60.050 40.000 0.00 0.00 0.00 3.43
1424 1596 0.322975 AGCGCTGGACTCAAACTCAT 59.677 50.000 10.39 0.00 0.00 2.90
1509 1682 1.401552 GCACTTGTGTCTTTGCAGTGA 59.598 47.619 0.00 0.00 34.97 3.41
1511 1684 1.133025 GTGCACTTGTGTCTTTGCAGT 59.867 47.619 10.32 0.00 45.31 4.40
1513 1686 0.455410 GGTGCACTTGTGTCTTTGCA 59.545 50.000 17.98 0.00 42.60 4.08
1514 1687 0.455410 TGGTGCACTTGTGTCTTTGC 59.545 50.000 17.98 0.00 35.45 3.68
1515 1688 1.472082 TGTGGTGCACTTGTGTCTTTG 59.528 47.619 17.98 0.00 35.11 2.77
1516 1689 1.832883 TGTGGTGCACTTGTGTCTTT 58.167 45.000 17.98 0.00 35.11 2.52
1517 1690 1.949525 GATGTGGTGCACTTGTGTCTT 59.050 47.619 17.98 0.06 35.11 3.01
1518 1691 1.597742 GATGTGGTGCACTTGTGTCT 58.402 50.000 17.98 0.00 35.11 3.41
1519 1692 0.593128 GGATGTGGTGCACTTGTGTC 59.407 55.000 17.98 8.76 35.11 3.67
1520 1693 0.183492 AGGATGTGGTGCACTTGTGT 59.817 50.000 17.98 0.00 35.11 3.72
1867 3341 6.530019 TGTCTAAGTATGACTCAGCAATGA 57.470 37.500 0.00 0.00 0.00 2.57
2075 6157 9.013229 TGTTCAATTAACATATTCTGCTTCACT 57.987 29.630 0.00 0.00 43.22 3.41
2244 6326 5.189180 GTCCTTGGAGAATGTGAAGCTATT 58.811 41.667 0.00 0.00 0.00 1.73
2267 6349 3.852286 CATGATGTTTGTTGGGTCATGG 58.148 45.455 5.90 0.00 41.34 3.66
2354 6436 5.292101 GGAACTGGAGTAGTGATCAATTTCG 59.708 44.000 0.00 0.00 40.26 3.46
2370 6452 3.008594 TCTTTTGCTAATCGGGAACTGGA 59.991 43.478 0.00 0.00 33.92 3.86
2380 6462 5.948992 AGTGTCCAACTCTTTTGCTAATC 57.051 39.130 0.00 0.00 31.64 1.75
2435 6517 9.851686 TCAGTTATAAGCTTCAATATGGTTGAT 57.148 29.630 0.00 0.00 0.00 2.57
2537 6619 2.368221 TCAGTTTGGGGATGCCAAAAAG 59.632 45.455 7.49 4.06 38.61 2.27
2556 6638 6.825213 ACTGTAATGAAGCTCAAGCATATTCA 59.175 34.615 4.59 6.24 45.16 2.57
2676 6758 4.314121 AGACAGAGCTTGACAAGATGAAC 58.686 43.478 19.51 12.03 0.00 3.18
2683 6765 4.679373 AGAAAGAGACAGAGCTTGACAA 57.321 40.909 0.00 0.00 0.00 3.18
2812 6895 2.287849 GCCACAGCTTCAAGGTTTCTTC 60.288 50.000 0.00 0.00 35.50 2.87
2882 6965 4.219725 TGATCTTGGAGTCGTACATTGTCA 59.780 41.667 0.00 0.00 0.00 3.58
2915 6998 5.517411 TGTTACAAGTAGTCGAAACACTGTG 59.483 40.000 6.19 6.19 0.00 3.66
2938 7021 7.497909 ACGTGACCTATTTAATACCCTTTCATG 59.502 37.037 0.00 0.00 0.00 3.07
2942 7025 6.714278 ACACGTGACCTATTTAATACCCTTT 58.286 36.000 25.01 0.00 0.00 3.11
3019 7102 8.734218 AATGCTAGAAATATATCATGCCTCAG 57.266 34.615 0.00 0.00 0.00 3.35
3199 7282 5.449177 GCCTTCTCCATATGCAACAGTAAAC 60.449 44.000 0.00 0.00 0.00 2.01
3203 7286 2.025981 TGCCTTCTCCATATGCAACAGT 60.026 45.455 0.00 0.00 0.00 3.55
3239 7322 2.485426 TCAAGCAAGCTACTTCACATGC 59.515 45.455 0.00 0.00 0.00 4.06
3287 7370 7.892778 TTCAAAAGTATGTTACTATGTCGCA 57.107 32.000 0.00 0.00 38.26 5.10
3330 7413 7.425577 TCAGTTCATCACAACTTCTACATTG 57.574 36.000 0.00 0.00 34.17 2.82
3331 7414 7.879677 TCATCAGTTCATCACAACTTCTACATT 59.120 33.333 0.00 0.00 34.17 2.71
3339 7422 5.862845 ACTCTTCATCAGTTCATCACAACT 58.137 37.500 0.00 0.00 37.05 3.16
3359 7442 8.237267 CCTCAAAAACATACATGGAAGTTACTC 58.763 37.037 0.00 0.00 0.00 2.59
3375 7458 4.669206 ATGCATTGACACCTCAAAAACA 57.331 36.364 0.00 0.00 39.90 2.83
3419 7502 3.942748 AGTCTTTTACCAAACACGCAAGA 59.057 39.130 0.00 0.00 43.62 3.02
3453 7536 6.314018 TGCACGACAAAGAGCTAATAATTTG 58.686 36.000 0.00 0.00 38.35 2.32
3538 7621 7.814587 TGCTTATCTCGTATCCAATGATTACAG 59.185 37.037 0.00 0.00 32.18 2.74
3640 7723 2.874701 GCAGACCTTGATAACGATGCAT 59.125 45.455 0.00 0.00 32.79 3.96
3773 7856 0.541392 TGTGTCTGTTGGTGAGCACT 59.459 50.000 0.16 0.00 0.00 4.40
3890 7973 0.919710 ATGAGGTGGAGGGCCTAAAC 59.080 55.000 5.73 7.91 36.29 2.01
3937 8020 1.302511 CTAGGCGTTGTTGCAGGGT 60.303 57.895 0.00 0.00 36.28 4.34
4040 8123 5.367937 AGTCCTACTTAGCACAATGGATGAT 59.632 40.000 0.00 0.00 0.00 2.45
4096 8179 6.849085 TTGTTGACATTATGCTAAATGGGT 57.151 33.333 13.73 0.00 40.48 4.51
4097 8180 6.256321 GCTTTGTTGACATTATGCTAAATGGG 59.744 38.462 13.73 0.00 40.48 4.00
4340 8423 4.395854 TCTGCACAATACACACCATCAATC 59.604 41.667 0.00 0.00 0.00 2.67
4377 8460 0.607217 CCCAGTGCACATGAGCTTGA 60.607 55.000 21.04 0.00 34.99 3.02
4393 8476 3.760151 CACATCAATCAAAGAAGCTCCCA 59.240 43.478 0.00 0.00 0.00 4.37
4435 8518 1.005394 CCGACTTTACAGCGGGTGT 60.005 57.895 17.69 17.69 43.86 4.16
4454 8537 9.693739 AATGAAAACACCAATATAGTATCCACA 57.306 29.630 0.00 0.00 0.00 4.17
4506 8589 4.937620 CACTAATGTCAAAGCTAGCCTCAA 59.062 41.667 12.13 0.00 0.00 3.02
4682 8765 3.969312 TGATGATAGCCCAACATCAGAGA 59.031 43.478 0.00 0.00 43.17 3.10
4683 8766 4.063689 GTGATGATAGCCCAACATCAGAG 58.936 47.826 0.00 0.00 46.72 3.35
4687 8770 8.798859 ATATAAAGTGATGATAGCCCAACATC 57.201 34.615 0.00 0.00 40.22 3.06
4689 8772 8.655901 TGTATATAAAGTGATGATAGCCCAACA 58.344 33.333 0.00 0.00 0.00 3.33
4733 8816 2.107950 TACCGCTTCCATTGTCAAGG 57.892 50.000 0.00 0.00 0.00 3.61
4736 8819 1.072489 TGGTTACCGCTTCCATTGTCA 59.928 47.619 0.00 0.00 0.00 3.58
4764 8847 0.478072 AGTGCACATCCCTGGTTGAA 59.522 50.000 21.04 0.00 0.00 2.69
4779 8862 0.954452 CAGAAACACCAGGGAAGTGC 59.046 55.000 0.00 0.00 38.87 4.40
4911 8994 2.034558 GGAACGAATATGCCCACCATTG 59.965 50.000 0.00 0.00 35.34 2.82
4914 8997 0.916086 AGGAACGAATATGCCCACCA 59.084 50.000 0.00 0.00 0.00 4.17
4954 9037 9.553064 ACCTAGCAATTTAGTTTCTGATATCAG 57.447 33.333 24.32 24.32 45.08 2.90
4974 9057 7.484959 CGTTTTAATTTTGGAGATGAACCTAGC 59.515 37.037 0.00 0.00 0.00 3.42
5002 9085 5.417580 GGTGGGAATTCACAGTATAGCAAAA 59.582 40.000 11.59 0.00 39.27 2.44
5030 9113 1.005450 TCCCCGGCAAAAATAGAAGCT 59.995 47.619 0.00 0.00 0.00 3.74
5034 9117 2.243736 AGGAATCCCCGGCAAAAATAGA 59.756 45.455 0.00 0.00 40.87 1.98
5037 9122 1.485124 GAGGAATCCCCGGCAAAAAT 58.515 50.000 0.00 0.00 40.87 1.82
5039 9124 1.000145 GGAGGAATCCCCGGCAAAA 60.000 57.895 0.00 0.00 40.87 2.44
5054 9139 2.354821 GCAATGTTACTAAAGGCCGGAG 59.645 50.000 5.05 0.00 0.00 4.63
5055 9140 2.290387 TGCAATGTTACTAAAGGCCGGA 60.290 45.455 5.05 0.00 0.00 5.14
5056 9141 2.088423 TGCAATGTTACTAAAGGCCGG 58.912 47.619 0.00 0.00 0.00 6.13
5058 9143 5.134202 AGTTTGCAATGTTACTAAAGGCC 57.866 39.130 0.00 0.00 0.00 5.19
5072 9161 4.000325 TCGCTTAGCATAGAAGTTTGCAA 59.000 39.130 4.70 0.00 41.35 4.08
5089 9178 4.935205 TGCACTACAAATCTACAATCGCTT 59.065 37.500 0.00 0.00 0.00 4.68
5099 9188 7.255035 GCATACAGAATGATGCACTACAAATCT 60.255 37.037 0.00 0.00 43.91 2.40
5132 9221 4.120589 GGAAACTATGACGATCACCCTTC 58.879 47.826 0.00 0.00 0.00 3.46
5143 9232 4.036262 TGCAACAACACAGGAAACTATGAC 59.964 41.667 0.00 0.00 36.85 3.06
5146 9235 4.836125 CTGCAACAACACAGGAAACTAT 57.164 40.909 0.00 0.00 40.21 2.12
5196 9285 0.724549 CCTAAATAGCGCACGTGCAA 59.275 50.000 37.03 23.25 42.21 4.08
5210 9299 8.852135 ACGAAATTTAATGTTGGAGAACCTAAA 58.148 29.630 0.00 0.00 37.04 1.85
5269 9365 6.438425 AGAAGGTTGATAAAAGCCATTGTCAT 59.562 34.615 0.44 0.00 31.69 3.06
5270 9366 5.774690 AGAAGGTTGATAAAAGCCATTGTCA 59.225 36.000 0.00 0.00 0.00 3.58
5272 9368 5.774690 TCAGAAGGTTGATAAAAGCCATTGT 59.225 36.000 0.00 0.00 0.00 2.71
5273 9369 6.271488 TCAGAAGGTTGATAAAAGCCATTG 57.729 37.500 0.00 0.00 0.00 2.82
5274 9370 6.894103 AGATCAGAAGGTTGATAAAAGCCATT 59.106 34.615 0.00 0.00 37.90 3.16
5275 9371 6.430007 AGATCAGAAGGTTGATAAAAGCCAT 58.570 36.000 0.00 0.00 37.90 4.40
5276 9372 5.819991 AGATCAGAAGGTTGATAAAAGCCA 58.180 37.500 0.00 0.00 37.90 4.75
5277 9373 6.558909 CAAGATCAGAAGGTTGATAAAAGCC 58.441 40.000 0.00 0.00 37.90 4.35
5278 9374 6.032717 GCAAGATCAGAAGGTTGATAAAAGC 58.967 40.000 0.00 0.00 37.90 3.51
5279 9375 7.149569 TGCAAGATCAGAAGGTTGATAAAAG 57.850 36.000 0.00 0.00 37.90 2.27
5280 9376 7.231317 ACTTGCAAGATCAGAAGGTTGATAAAA 59.769 33.333 32.50 0.00 37.90 1.52
5281 9377 6.716628 ACTTGCAAGATCAGAAGGTTGATAAA 59.283 34.615 32.50 0.00 37.90 1.40
5313 9409 1.670590 GATCATCCCAGAGAGCGGG 59.329 63.158 0.00 0.00 46.03 6.13
5334 9430 1.433471 GGCACTGCCTTAATTCCGC 59.567 57.895 13.28 0.00 46.69 5.54
5444 9540 2.247790 GCTGTCAGTCGGCACAATT 58.752 52.632 0.93 0.00 46.78 2.32
5517 9613 4.502016 GATCGCATGATCCATACAGACAT 58.498 43.478 0.00 0.00 44.39 3.06
5543 9639 1.813178 GTTTTGCCTACAGCCTTCTCC 59.187 52.381 0.00 0.00 42.71 3.71
5591 9688 3.140144 TGGGACCTCAAAATCTTCTGGTT 59.860 43.478 0.00 0.00 0.00 3.67
5595 9692 4.507512 GGAGTTGGGACCTCAAAATCTTCT 60.508 45.833 0.00 0.00 0.00 2.85
5604 9701 0.110486 GCTTTGGAGTTGGGACCTCA 59.890 55.000 0.00 0.00 0.00 3.86
5642 9739 7.330946 GGCGCAGTCTCATTATGTACATTTATA 59.669 37.037 14.77 0.00 0.00 0.98
5709 9806 1.552337 AGTGATGAGCGTGATGAAGGT 59.448 47.619 0.00 0.00 0.00 3.50
5797 9904 6.328934 TGTCCAGGCTATGTTCATCCTTATAA 59.671 38.462 0.00 0.00 0.00 0.98
5917 10045 1.640428 ACGTGTCGTATCTGGCAATG 58.360 50.000 0.00 0.00 38.73 2.82
5925 10053 3.476295 TGTCCTTGTACGTGTCGTATC 57.524 47.619 0.00 1.45 44.12 2.24
5927 10055 2.601979 CGTTGTCCTTGTACGTGTCGTA 60.602 50.000 0.00 0.00 41.54 3.43
5936 10064 4.703575 AGTACAGCTATCGTTGTCCTTGTA 59.296 41.667 0.00 0.00 36.02 2.41
5945 10073 5.496133 AACATACGAGTACAGCTATCGTT 57.504 39.130 17.06 6.39 46.76 3.85
5947 10075 6.225703 AGTAACATACGAGTACAGCTATCG 57.774 41.667 0.00 7.90 42.04 2.92
5973 10101 4.858850 TCCAAGCATATTCAGGTTCACAT 58.141 39.130 0.00 0.00 0.00 3.21
5974 10102 4.299586 TCCAAGCATATTCAGGTTCACA 57.700 40.909 0.00 0.00 0.00 3.58
5975 10103 4.276926 GGATCCAAGCATATTCAGGTTCAC 59.723 45.833 6.95 0.00 0.00 3.18
5976 10104 4.166725 AGGATCCAAGCATATTCAGGTTCA 59.833 41.667 15.82 0.00 0.00 3.18
5977 10105 4.723309 AGGATCCAAGCATATTCAGGTTC 58.277 43.478 15.82 0.00 0.00 3.62
6019 10152 1.842562 AGGGTGCTGCATAGAGTTGAT 59.157 47.619 5.27 0.00 0.00 2.57
6022 10155 2.887151 AAAGGGTGCTGCATAGAGTT 57.113 45.000 5.27 0.00 0.00 3.01
6023 10156 2.716217 GAAAAGGGTGCTGCATAGAGT 58.284 47.619 5.27 0.00 0.00 3.24
6024 10157 1.667724 CGAAAAGGGTGCTGCATAGAG 59.332 52.381 5.27 0.00 0.00 2.43
6025 10158 1.277842 TCGAAAAGGGTGCTGCATAGA 59.722 47.619 5.27 0.00 0.00 1.98
6026 10159 1.737838 TCGAAAAGGGTGCTGCATAG 58.262 50.000 5.27 0.00 0.00 2.23
6027 10160 2.192664 TTCGAAAAGGGTGCTGCATA 57.807 45.000 5.27 0.00 0.00 3.14
6028 10161 1.327303 TTTCGAAAAGGGTGCTGCAT 58.673 45.000 8.44 0.00 0.00 3.96
6029 10162 1.107114 TTTTCGAAAAGGGTGCTGCA 58.893 45.000 19.08 0.00 0.00 4.41
6030 10163 1.858458 GTTTTTCGAAAAGGGTGCTGC 59.142 47.619 21.53 0.00 0.00 5.25
6031 10164 3.157932 TGTTTTTCGAAAAGGGTGCTG 57.842 42.857 21.53 0.00 0.00 4.41
6032 10165 3.878160 TTGTTTTTCGAAAAGGGTGCT 57.122 38.095 21.53 0.00 0.00 4.40
6033 10166 4.930463 TTTTGTTTTTCGAAAAGGGTGC 57.070 36.364 21.53 12.01 0.00 5.01
6034 10167 6.367695 AGAGTTTTTGTTTTTCGAAAAGGGTG 59.632 34.615 21.53 0.00 39.29 4.61
6035 10168 6.460781 AGAGTTTTTGTTTTTCGAAAAGGGT 58.539 32.000 21.53 4.23 39.29 4.34
6036 10169 6.961359 AGAGTTTTTGTTTTTCGAAAAGGG 57.039 33.333 21.53 0.00 39.29 3.95
6037 10170 7.597441 CGTAGAGTTTTTGTTTTTCGAAAAGG 58.403 34.615 21.53 0.28 39.29 3.11
6038 10171 7.102401 GCGTAGAGTTTTTGTTTTTCGAAAAG 58.898 34.615 21.53 7.69 39.29 2.27
6039 10172 6.581542 TGCGTAGAGTTTTTGTTTTTCGAAAA 59.418 30.769 19.08 19.08 37.15 2.29
6040 10173 6.084925 TGCGTAGAGTTTTTGTTTTTCGAAA 58.915 32.000 6.47 6.47 0.00 3.46
6041 10174 5.629097 TGCGTAGAGTTTTTGTTTTTCGAA 58.371 33.333 0.00 0.00 0.00 3.71
6042 10175 5.219226 TGCGTAGAGTTTTTGTTTTTCGA 57.781 34.783 0.00 0.00 0.00 3.71
6043 10176 4.086277 GCTGCGTAGAGTTTTTGTTTTTCG 60.086 41.667 4.08 0.00 0.00 3.46
6044 10177 4.796312 TGCTGCGTAGAGTTTTTGTTTTTC 59.204 37.500 4.08 0.00 0.00 2.29
6045 10178 4.561213 GTGCTGCGTAGAGTTTTTGTTTTT 59.439 37.500 4.08 0.00 0.00 1.94
6046 10179 4.102649 GTGCTGCGTAGAGTTTTTGTTTT 58.897 39.130 4.08 0.00 0.00 2.43
6047 10180 3.488553 GGTGCTGCGTAGAGTTTTTGTTT 60.489 43.478 4.08 0.00 0.00 2.83
6048 10181 2.032924 GGTGCTGCGTAGAGTTTTTGTT 59.967 45.455 4.08 0.00 0.00 2.83
6049 10182 1.602377 GGTGCTGCGTAGAGTTTTTGT 59.398 47.619 4.08 0.00 0.00 2.83
6050 10183 1.873591 AGGTGCTGCGTAGAGTTTTTG 59.126 47.619 4.08 0.00 0.00 2.44
6051 10184 2.256117 AGGTGCTGCGTAGAGTTTTT 57.744 45.000 4.08 0.00 0.00 1.94
6052 10185 2.256117 AAGGTGCTGCGTAGAGTTTT 57.744 45.000 4.08 0.00 0.00 2.43
6053 10186 3.262420 CATAAGGTGCTGCGTAGAGTTT 58.738 45.455 4.08 0.00 0.00 2.66
6068 10201 7.338800 ACAAATATCCAAACAGAGCATAAGG 57.661 36.000 0.00 0.00 0.00 2.69
6079 10212 5.598417 AGCCCTCCAATACAAATATCCAAAC 59.402 40.000 0.00 0.00 0.00 2.93
6106 10239 7.722949 ATTGGTATTCCAGTCAATTCAATGT 57.277 32.000 0.00 0.00 45.22 2.71
6162 10295 5.704978 AGTGAACAACCAAACAAGCAAATTT 59.295 32.000 0.00 0.00 0.00 1.82
6167 10300 3.951775 AAGTGAACAACCAAACAAGCA 57.048 38.095 0.00 0.00 0.00 3.91
6187 10321 8.270030 ACAGATCAAGATTCCATGAGTCAATTA 58.730 33.333 0.00 0.00 0.00 1.40
6310 10829 2.820728 TCGGATCAGAGGGAGTACAA 57.179 50.000 0.00 0.00 0.00 2.41
6319 10838 4.112634 TGCGTCTTTTATTCGGATCAGAG 58.887 43.478 0.00 0.00 0.00 3.35
6323 10842 2.032808 GGCTGCGTCTTTTATTCGGATC 60.033 50.000 0.00 0.00 0.00 3.36
6327 10846 2.271800 AGAGGCTGCGTCTTTTATTCG 58.728 47.619 18.32 0.00 0.00 3.34
6332 10851 3.887621 TGTATAGAGGCTGCGTCTTTT 57.112 42.857 27.24 18.01 30.95 2.27
6336 10855 2.678324 GGAATGTATAGAGGCTGCGTC 58.322 52.381 14.08 14.08 0.00 5.19
6338 10857 1.269723 TCGGAATGTATAGAGGCTGCG 59.730 52.381 0.00 0.00 0.00 5.18
6339 10858 3.386768 TTCGGAATGTATAGAGGCTGC 57.613 47.619 0.00 0.00 0.00 5.25
6343 10862 8.648097 CGTCATTTAATTCGGAATGTATAGAGG 58.352 37.037 3.59 3.24 35.35 3.69
6344 10863 8.162880 GCGTCATTTAATTCGGAATGTATAGAG 58.837 37.037 3.59 0.00 35.35 2.43
6345 10864 7.654116 TGCGTCATTTAATTCGGAATGTATAGA 59.346 33.333 3.59 0.00 35.35 1.98
6346 10865 7.792925 TGCGTCATTTAATTCGGAATGTATAG 58.207 34.615 3.59 0.00 35.35 1.31
6347 10866 7.570507 GCTGCGTCATTTAATTCGGAATGTATA 60.571 37.037 3.59 0.00 35.35 1.47
6349 10868 5.503357 GCTGCGTCATTTAATTCGGAATGTA 60.503 40.000 3.59 0.00 35.35 2.29
6350 10869 4.730613 GCTGCGTCATTTAATTCGGAATGT 60.731 41.667 3.59 0.00 35.35 2.71
6351 10870 3.725740 GCTGCGTCATTTAATTCGGAATG 59.274 43.478 3.59 0.00 35.18 2.67
6353 10872 2.096819 GGCTGCGTCATTTAATTCGGAA 59.903 45.455 0.00 0.00 0.00 4.30
6355 10874 1.670811 AGGCTGCGTCATTTAATTCGG 59.329 47.619 0.00 0.00 0.00 4.30
6356 10875 2.609459 AGAGGCTGCGTCATTTAATTCG 59.391 45.455 22.55 0.00 0.00 3.34
6357 10876 5.931441 ATAGAGGCTGCGTCATTTAATTC 57.069 39.130 22.55 0.00 0.00 2.17
6358 10877 6.288294 TGTATAGAGGCTGCGTCATTTAATT 58.712 36.000 22.55 4.45 0.00 1.40
6359 10878 5.853936 TGTATAGAGGCTGCGTCATTTAAT 58.146 37.500 22.55 10.81 0.00 1.40
6360 10879 5.270893 TGTATAGAGGCTGCGTCATTTAA 57.729 39.130 22.55 4.39 0.00 1.52
6361 10880 4.929819 TGTATAGAGGCTGCGTCATTTA 57.070 40.909 22.55 8.40 0.00 1.40
6362 10881 3.819564 TGTATAGAGGCTGCGTCATTT 57.180 42.857 22.55 10.17 0.00 2.32
6363 10882 4.342862 AATGTATAGAGGCTGCGTCATT 57.657 40.909 22.55 11.62 0.00 2.57
6364 10883 4.280929 TGTAATGTATAGAGGCTGCGTCAT 59.719 41.667 22.55 15.67 0.00 3.06
6365 10884 3.634910 TGTAATGTATAGAGGCTGCGTCA 59.365 43.478 22.55 10.28 0.00 4.35
6366 10885 4.238761 TGTAATGTATAGAGGCTGCGTC 57.761 45.455 14.08 14.08 0.00 5.19
6367 10886 4.665833 TTGTAATGTATAGAGGCTGCGT 57.334 40.909 0.00 0.00 0.00 5.24
6368 10887 6.017934 ACAAATTGTAATGTATAGAGGCTGCG 60.018 38.462 0.00 0.00 0.00 5.18
6369 10888 7.134815 CACAAATTGTAATGTATAGAGGCTGC 58.865 38.462 0.00 0.00 0.00 5.25
6370 10889 7.642669 CCACAAATTGTAATGTATAGAGGCTG 58.357 38.462 0.00 0.00 0.00 4.85
6371 10890 6.263168 GCCACAAATTGTAATGTATAGAGGCT 59.737 38.462 0.00 0.00 33.32 4.58
6372 10891 6.263168 AGCCACAAATTGTAATGTATAGAGGC 59.737 38.462 0.00 3.54 35.18 4.70
6373 10892 7.807977 AGCCACAAATTGTAATGTATAGAGG 57.192 36.000 0.00 0.00 0.00 3.69
6375 10894 9.845740 ACATAGCCACAAATTGTAATGTATAGA 57.154 29.630 0.00 0.00 0.00 1.98
6376 10895 9.882996 CACATAGCCACAAATTGTAATGTATAG 57.117 33.333 0.00 0.00 0.00 1.31
6377 10896 8.845227 CCACATAGCCACAAATTGTAATGTATA 58.155 33.333 0.00 0.00 0.00 1.47
6378 10897 7.684187 GCCACATAGCCACAAATTGTAATGTAT 60.684 37.037 0.00 0.00 0.00 2.29
6379 10898 6.405286 GCCACATAGCCACAAATTGTAATGTA 60.405 38.462 0.00 0.00 0.00 2.29
6380 10899 5.624281 GCCACATAGCCACAAATTGTAATGT 60.624 40.000 0.00 4.32 0.00 2.71
6381 10900 4.805192 GCCACATAGCCACAAATTGTAATG 59.195 41.667 0.00 3.72 0.00 1.90
6382 10901 4.711355 AGCCACATAGCCACAAATTGTAAT 59.289 37.500 0.00 0.00 0.00 1.89
6383 10902 4.085733 AGCCACATAGCCACAAATTGTAA 58.914 39.130 0.00 0.00 0.00 2.41
6384 10903 3.696045 AGCCACATAGCCACAAATTGTA 58.304 40.909 0.00 0.00 0.00 2.41
6385 10904 2.528564 AGCCACATAGCCACAAATTGT 58.471 42.857 0.00 0.00 0.00 2.71
6386 10905 3.598019 AAGCCACATAGCCACAAATTG 57.402 42.857 0.00 0.00 0.00 2.32
6390 10909 3.364460 ACATAAGCCACATAGCCACAA 57.636 42.857 0.00 0.00 0.00 3.33
6396 10915 5.824904 AGAGCAAAACATAAGCCACATAG 57.175 39.130 0.00 0.00 0.00 2.23
6401 10920 5.009631 ACATGTAGAGCAAAACATAAGCCA 58.990 37.500 0.00 0.00 34.61 4.75
6526 11076 0.877649 CCTGACGGCCTCATGATTCG 60.878 60.000 0.00 3.41 0.00 3.34
6533 11083 2.117423 TCTGACCTGACGGCCTCA 59.883 61.111 0.00 2.72 0.00 3.86
6534 11084 2.574399 GTCTGACCTGACGGCCTC 59.426 66.667 0.00 0.00 0.00 4.70
6546 11096 2.612972 GGAGTCAAATTCTGGCGTCTGA 60.613 50.000 0.00 0.00 33.60 3.27
6547 11097 1.734465 GGAGTCAAATTCTGGCGTCTG 59.266 52.381 0.00 0.00 33.60 3.51
6548 11098 1.339151 GGGAGTCAAATTCTGGCGTCT 60.339 52.381 0.00 0.00 33.60 4.18
6549 11099 1.087501 GGGAGTCAAATTCTGGCGTC 58.912 55.000 0.00 0.00 33.60 5.19
6550 11100 0.693049 AGGGAGTCAAATTCTGGCGT 59.307 50.000 0.00 0.00 33.60 5.68
6578 11131 1.754803 ACCGGAGCTGAATATCACGAA 59.245 47.619 9.46 0.00 0.00 3.85
6589 11142 0.250295 TCAACCTCAAACCGGAGCTG 60.250 55.000 9.46 1.53 33.47 4.24
6598 11151 3.498481 CCAAGGTCATCCTCAACCTCAAA 60.498 47.826 0.00 0.00 45.21 2.69
6599 11152 2.040278 CCAAGGTCATCCTCAACCTCAA 59.960 50.000 0.00 0.00 45.21 3.02
6612 11166 2.696526 AGAGTAGACACCCAAGGTCA 57.303 50.000 0.00 0.00 37.74 4.02
6627 11201 1.756950 TATGCCGAGGCCGAAGAGT 60.757 57.895 12.05 0.00 41.09 3.24
6651 11225 5.525378 GTGCTGGTAGACCTAATGAATTGAG 59.475 44.000 0.00 0.00 36.82 3.02
6662 11236 1.072331 CAAGGTTGTGCTGGTAGACCT 59.928 52.381 0.00 0.00 42.29 3.85
6706 11280 5.780958 AGAATTTAACCTTAGGTGGAGCT 57.219 39.130 3.99 0.00 35.34 4.09
6710 11284 7.013846 TCACACAAAGAATTTAACCTTAGGTGG 59.986 37.037 3.99 0.00 35.03 4.61
6712 11286 7.778382 AGTCACACAAAGAATTTAACCTTAGGT 59.222 33.333 0.00 0.00 35.03 3.08
6764 11339 0.240145 CGACTAGTCAAGTGACCGCA 59.760 55.000 22.37 0.00 45.85 5.69
6765 11340 0.520404 TCGACTAGTCAAGTGACCGC 59.480 55.000 22.37 0.00 45.85 5.68
6768 11343 3.566523 CAACCTCGACTAGTCAAGTGAC 58.433 50.000 22.37 3.12 45.08 3.67
6771 11346 2.872732 TCCAACCTCGACTAGTCAAGT 58.127 47.619 22.37 12.76 42.80 3.16
6796 11371 1.181098 AAAGCGAGCAAAGGCCACAT 61.181 50.000 5.01 0.00 42.56 3.21
6807 11382 1.443363 GCTCTTTGGCAAAGCGAGC 60.443 57.895 30.40 28.85 38.39 5.03
6809 11384 1.100463 TGTGCTCTTTGGCAAAGCGA 61.100 50.000 30.40 16.58 44.18 4.93
6819 11394 2.564947 ACTCCGATCTCTTGTGCTCTTT 59.435 45.455 0.00 0.00 0.00 2.52
6825 11400 3.584406 AGTGAACTCCGATCTCTTGTG 57.416 47.619 0.00 0.00 0.00 3.33
6837 11412 2.673368 CTCCGCACCAATAAGTGAACTC 59.327 50.000 0.00 0.00 40.34 3.01
6838 11413 2.699954 CTCCGCACCAATAAGTGAACT 58.300 47.619 0.00 0.00 40.34 3.01
6868 11443 3.181465 GGTGTAGTGTACATGGGGATGAG 60.181 52.174 0.00 0.00 41.34 2.90
6893 11468 1.072331 GTCCACTTGGCTCTTGAGGAA 59.928 52.381 0.00 0.00 34.44 3.36
6897 11472 2.024176 TAGGTCCACTTGGCTCTTGA 57.976 50.000 0.00 0.00 34.44 3.02
6929 11504 2.800746 GTTCAATGGTGCGTGCGC 60.801 61.111 9.85 9.85 42.35 6.09
6930 11505 1.066656 CATGTTCAATGGTGCGTGCG 61.067 55.000 0.00 0.00 0.00 5.34
6937 11512 6.095300 TGCGAATTAATCTCATGTTCAATGGT 59.905 34.615 0.00 0.00 0.00 3.55
6952 11527 6.483640 GGAGAATCACTAAGGTGCGAATTAAT 59.516 38.462 0.00 0.00 42.72 1.40
6971 11546 4.971282 TCTCACATGTATGGAAGGGAGAAT 59.029 41.667 0.00 0.00 0.00 2.40
6972 11547 4.162320 GTCTCACATGTATGGAAGGGAGAA 59.838 45.833 9.16 0.00 0.00 2.87
6973 11548 3.706594 GTCTCACATGTATGGAAGGGAGA 59.293 47.826 0.00 0.74 0.00 3.71
6974 11549 3.452264 TGTCTCACATGTATGGAAGGGAG 59.548 47.826 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.