Multiple sequence alignment - TraesCS3B01G290200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G290200 chr3B 100.000 3434 0 0 1 3434 465888257 465884824 0.000000e+00 6342.0
1 TraesCS3B01G290200 chr3D 93.388 2087 92 16 445 2520 359629914 359631965 0.000000e+00 3048.0
2 TraesCS3B01G290200 chr3D 89.623 106 11 0 4 109 359629812 359629917 5.980000e-28 135.0
3 TraesCS3B01G290200 chr3D 94.340 53 2 1 108 160 83499500 83499551 2.840000e-11 80.5
4 TraesCS3B01G290200 chr3A 93.530 1252 77 2 1045 2293 479099152 479100402 0.000000e+00 1860.0
5 TraesCS3B01G290200 chr3A 90.339 766 70 3 2671 3434 708974815 708974052 0.000000e+00 1002.0
6 TraesCS3B01G290200 chr3A 93.720 207 8 1 2296 2502 479100444 479100645 4.310000e-79 305.0
7 TraesCS3B01G290200 chr3A 84.141 227 14 7 789 1015 479098950 479099154 2.090000e-47 200.0
8 TraesCS3B01G290200 chr3A 85.882 170 9 5 2500 2669 479100966 479101120 2.120000e-37 167.0
9 TraesCS3B01G290200 chr3A 92.661 109 4 3 697 801 479096235 479096343 1.650000e-33 154.0
10 TraesCS3B01G290200 chr7D 94.263 767 42 2 2670 3434 615783850 615783084 0.000000e+00 1171.0
11 TraesCS3B01G290200 chr5D 94.133 767 43 2 2670 3434 41796342 41795576 0.000000e+00 1166.0
12 TraesCS3B01G290200 chr6D 93.995 766 43 3 2671 3434 429479290 429478526 0.000000e+00 1157.0
13 TraesCS3B01G290200 chr6B 92.568 767 52 4 2671 3434 712157272 712156508 0.000000e+00 1096.0
14 TraesCS3B01G290200 chr1B 92.438 767 53 4 2671 3434 6401723 6400959 0.000000e+00 1090.0
15 TraesCS3B01G290200 chr7A 95.719 654 25 3 2783 3434 12799266 12798614 0.000000e+00 1050.0
16 TraesCS3B01G290200 chr7A 75.692 1337 296 22 1031 2352 51090584 51091906 2.890000e-180 641.0
17 TraesCS3B01G290200 chr7A 75.091 1373 313 22 1031 2388 51259213 51260571 6.300000e-172 614.0
18 TraesCS3B01G290200 chr4A 91.265 767 62 4 2671 3434 58513035 58512271 0.000000e+00 1040.0
19 TraesCS3B01G290200 chr6A 89.710 758 72 6 2674 3427 563397424 563396669 0.000000e+00 963.0
20 TraesCS3B01G290200 chr2B 78.571 1400 275 18 1000 2388 46677640 46679025 0.000000e+00 900.0
21 TraesCS3B01G290200 chr2B 77.321 1411 292 22 1036 2438 159098449 159099839 0.000000e+00 808.0
22 TraesCS3B01G290200 chr2B 76.184 1394 289 33 1033 2400 6178717 6180093 0.000000e+00 695.0
23 TraesCS3B01G290200 chr2B 89.443 341 31 3 108 445 135027451 135027113 3.170000e-115 425.0
24 TraesCS3B01G290200 chr2B 98.113 53 0 1 108 160 235149987 235150038 1.310000e-14 91.6
25 TraesCS3B01G290200 chr2D 78.624 1366 259 24 1000 2350 28965021 28966368 0.000000e+00 874.0
26 TraesCS3B01G290200 chr2D 77.981 1367 280 15 1031 2388 28915483 28914129 0.000000e+00 837.0
27 TraesCS3B01G290200 chr2D 76.318 1385 300 22 1033 2400 5267265 5268638 0.000000e+00 715.0
28 TraesCS3B01G290200 chr2A 78.118 1403 276 22 1000 2388 30864682 30866067 0.000000e+00 861.0
29 TraesCS3B01G290200 chr2A 75.681 1394 296 32 1033 2400 3816526 3817902 0.000000e+00 656.0
30 TraesCS3B01G290200 chr7B 92.899 338 14 2 108 445 230230152 230229825 1.850000e-132 483.0
31 TraesCS3B01G290200 chrUn 76.255 737 150 15 1000 1725 370635994 370635272 5.410000e-98 368.0
32 TraesCS3B01G290200 chr5B 98.113 53 0 1 108 160 631789109 631789160 1.310000e-14 91.6
33 TraesCS3B01G290200 chr1D 98.113 53 0 1 108 160 389116303 389116354 1.310000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G290200 chr3B 465884824 465888257 3433 True 6342.0 6342 100.0000 1 3434 1 chr3B.!!$R1 3433
1 TraesCS3B01G290200 chr3D 359629812 359631965 2153 False 1591.5 3048 91.5055 4 2520 2 chr3D.!!$F2 2516
2 TraesCS3B01G290200 chr3A 708974052 708974815 763 True 1002.0 1002 90.3390 2671 3434 1 chr3A.!!$R1 763
3 TraesCS3B01G290200 chr3A 479096235 479101120 4885 False 537.2 1860 89.9868 697 2669 5 chr3A.!!$F1 1972
4 TraesCS3B01G290200 chr7D 615783084 615783850 766 True 1171.0 1171 94.2630 2670 3434 1 chr7D.!!$R1 764
5 TraesCS3B01G290200 chr5D 41795576 41796342 766 True 1166.0 1166 94.1330 2670 3434 1 chr5D.!!$R1 764
6 TraesCS3B01G290200 chr6D 429478526 429479290 764 True 1157.0 1157 93.9950 2671 3434 1 chr6D.!!$R1 763
7 TraesCS3B01G290200 chr6B 712156508 712157272 764 True 1096.0 1096 92.5680 2671 3434 1 chr6B.!!$R1 763
8 TraesCS3B01G290200 chr1B 6400959 6401723 764 True 1090.0 1090 92.4380 2671 3434 1 chr1B.!!$R1 763
9 TraesCS3B01G290200 chr7A 12798614 12799266 652 True 1050.0 1050 95.7190 2783 3434 1 chr7A.!!$R1 651
10 TraesCS3B01G290200 chr7A 51090584 51091906 1322 False 641.0 641 75.6920 1031 2352 1 chr7A.!!$F1 1321
11 TraesCS3B01G290200 chr7A 51259213 51260571 1358 False 614.0 614 75.0910 1031 2388 1 chr7A.!!$F2 1357
12 TraesCS3B01G290200 chr4A 58512271 58513035 764 True 1040.0 1040 91.2650 2671 3434 1 chr4A.!!$R1 763
13 TraesCS3B01G290200 chr6A 563396669 563397424 755 True 963.0 963 89.7100 2674 3427 1 chr6A.!!$R1 753
14 TraesCS3B01G290200 chr2B 46677640 46679025 1385 False 900.0 900 78.5710 1000 2388 1 chr2B.!!$F2 1388
15 TraesCS3B01G290200 chr2B 159098449 159099839 1390 False 808.0 808 77.3210 1036 2438 1 chr2B.!!$F3 1402
16 TraesCS3B01G290200 chr2B 6178717 6180093 1376 False 695.0 695 76.1840 1033 2400 1 chr2B.!!$F1 1367
17 TraesCS3B01G290200 chr2D 28965021 28966368 1347 False 874.0 874 78.6240 1000 2350 1 chr2D.!!$F2 1350
18 TraesCS3B01G290200 chr2D 28914129 28915483 1354 True 837.0 837 77.9810 1031 2388 1 chr2D.!!$R1 1357
19 TraesCS3B01G290200 chr2D 5267265 5268638 1373 False 715.0 715 76.3180 1033 2400 1 chr2D.!!$F1 1367
20 TraesCS3B01G290200 chr2A 30864682 30866067 1385 False 861.0 861 78.1180 1000 2388 1 chr2A.!!$F2 1388
21 TraesCS3B01G290200 chr2A 3816526 3817902 1376 False 656.0 656 75.6810 1033 2400 1 chr2A.!!$F1 1367
22 TraesCS3B01G290200 chrUn 370635272 370635994 722 True 368.0 368 76.2550 1000 1725 1 chrUn.!!$R1 725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.034089 CAACCCAAGATGGTCCCCTC 60.034 60.0 0.0 0.0 37.76 4.30 F
1268 3895 0.034477 CCCGTAAAATCCAGCCACCT 60.034 55.0 0.0 0.0 0.00 4.00 F
2037 4683 0.178955 TGGACCGTACCAAGGAGACA 60.179 55.0 0.0 0.0 36.96 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1481 4114 0.035739 GTCCTGGAAGTTGGCGGTAA 59.964 55.000 0.0 0.0 0.0 2.85 R
2238 4886 0.172803 CCTCCTTGTCGTACCCTTCG 59.827 60.000 0.0 0.0 0.0 3.79 R
2843 5872 1.968493 TGAGAGGGAGTGTTGGTGTAC 59.032 52.381 0.0 0.0 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.132834 TGCCGATAAAGTAGCGTCGAA 59.867 47.619 0.00 0.00 35.51 3.71
60 61 0.928229 AGCGTCGAAGAACAACACAC 59.072 50.000 1.37 0.00 39.69 3.82
69 70 4.443063 CGAAGAACAACACACGAGATACAA 59.557 41.667 0.00 0.00 0.00 2.41
74 75 4.299155 ACAACACACGAGATACAACTCAG 58.701 43.478 0.00 0.00 36.80 3.35
109 110 8.638685 AATTATTGAAAGAAATGCGAATCAGG 57.361 30.769 0.00 0.00 0.00 3.86
110 111 4.439305 TTGAAAGAAATGCGAATCAGGG 57.561 40.909 0.00 0.00 0.00 4.45
111 112 2.164219 TGAAAGAAATGCGAATCAGGGC 59.836 45.455 0.00 0.00 0.00 5.19
112 113 1.838112 AAGAAATGCGAATCAGGGCA 58.162 45.000 0.00 0.00 44.29 5.36
113 114 1.838112 AGAAATGCGAATCAGGGCAA 58.162 45.000 0.00 0.00 43.26 4.52
114 115 2.381911 AGAAATGCGAATCAGGGCAAT 58.618 42.857 0.00 0.00 43.26 3.56
115 116 2.100252 AGAAATGCGAATCAGGGCAATG 59.900 45.455 0.00 0.00 43.26 2.82
116 117 1.477553 AATGCGAATCAGGGCAATGT 58.522 45.000 0.00 0.00 43.26 2.71
117 118 2.346766 ATGCGAATCAGGGCAATGTA 57.653 45.000 0.00 0.00 43.26 2.29
118 119 1.378531 TGCGAATCAGGGCAATGTAC 58.621 50.000 0.00 0.00 35.98 2.90
119 120 1.339535 TGCGAATCAGGGCAATGTACA 60.340 47.619 0.00 0.00 35.98 2.90
120 121 1.742831 GCGAATCAGGGCAATGTACAA 59.257 47.619 0.00 0.00 0.00 2.41
121 122 2.358898 GCGAATCAGGGCAATGTACAAT 59.641 45.455 0.00 0.00 0.00 2.71
122 123 3.793129 GCGAATCAGGGCAATGTACAATG 60.793 47.826 6.55 6.55 0.00 2.82
123 124 3.243168 CGAATCAGGGCAATGTACAATGG 60.243 47.826 12.73 0.55 0.00 3.16
124 125 3.668141 ATCAGGGCAATGTACAATGGA 57.332 42.857 12.73 1.98 0.00 3.41
125 126 3.003394 TCAGGGCAATGTACAATGGAG 57.997 47.619 12.73 0.00 0.00 3.86
126 127 2.026641 CAGGGCAATGTACAATGGAGG 58.973 52.381 12.73 0.00 0.00 4.30
127 128 0.746659 GGGCAATGTACAATGGAGGC 59.253 55.000 12.73 7.12 0.00 4.70
128 129 1.473258 GGCAATGTACAATGGAGGCA 58.527 50.000 12.73 0.00 0.00 4.75
129 130 1.134946 GGCAATGTACAATGGAGGCAC 59.865 52.381 12.73 0.00 0.00 5.01
131 132 3.278574 GCAATGTACAATGGAGGCACTA 58.721 45.455 12.73 0.00 41.55 2.74
132 133 3.313526 GCAATGTACAATGGAGGCACTAG 59.686 47.826 12.73 0.00 41.55 2.57
133 134 4.517285 CAATGTACAATGGAGGCACTAGT 58.483 43.478 0.00 0.00 41.55 2.57
134 135 5.670485 CAATGTACAATGGAGGCACTAGTA 58.330 41.667 0.00 0.00 41.55 1.82
135 136 6.291377 CAATGTACAATGGAGGCACTAGTAT 58.709 40.000 0.00 0.00 41.55 2.12
136 137 7.441836 CAATGTACAATGGAGGCACTAGTATA 58.558 38.462 0.00 0.00 41.55 1.47
137 138 6.650427 TGTACAATGGAGGCACTAGTATAG 57.350 41.667 0.00 0.00 46.50 1.31
151 152 5.720371 CTAGTATAGTGCTGCTCCAGATT 57.280 43.478 0.00 0.00 32.85 2.40
152 153 4.599047 AGTATAGTGCTGCTCCAGATTC 57.401 45.455 0.00 0.00 32.44 2.52
153 154 2.926778 ATAGTGCTGCTCCAGATTCC 57.073 50.000 0.00 0.00 32.44 3.01
154 155 1.571955 TAGTGCTGCTCCAGATTCCA 58.428 50.000 0.00 0.00 32.44 3.53
155 156 0.035630 AGTGCTGCTCCAGATTCCAC 60.036 55.000 0.00 0.00 32.44 4.02
156 157 1.078918 TGCTGCTCCAGATTCCACG 60.079 57.895 0.00 0.00 32.44 4.94
157 158 1.078848 GCTGCTCCAGATTCCACGT 60.079 57.895 0.00 0.00 32.44 4.49
158 159 0.175760 GCTGCTCCAGATTCCACGTA 59.824 55.000 0.00 0.00 32.44 3.57
159 160 1.405526 GCTGCTCCAGATTCCACGTAA 60.406 52.381 0.00 0.00 32.44 3.18
160 161 2.544685 CTGCTCCAGATTCCACGTAAG 58.455 52.381 0.00 0.00 37.15 2.34
161 162 2.166459 CTGCTCCAGATTCCACGTAAGA 59.834 50.000 0.00 0.00 35.50 2.10
162 163 2.166459 TGCTCCAGATTCCACGTAAGAG 59.834 50.000 0.00 0.00 43.62 2.85
163 164 2.166664 GCTCCAGATTCCACGTAAGAGT 59.833 50.000 0.00 0.00 43.62 3.24
164 165 3.775202 CTCCAGATTCCACGTAAGAGTG 58.225 50.000 0.00 0.00 41.53 3.51
165 166 3.427573 TCCAGATTCCACGTAAGAGTGA 58.572 45.455 0.00 0.00 44.43 3.41
166 167 3.830178 TCCAGATTCCACGTAAGAGTGAA 59.170 43.478 0.00 0.00 44.43 3.18
167 168 4.082190 TCCAGATTCCACGTAAGAGTGAAG 60.082 45.833 0.00 0.00 44.43 3.02
168 169 4.177026 CAGATTCCACGTAAGAGTGAAGG 58.823 47.826 0.00 0.00 44.43 3.46
169 170 2.450609 TTCCACGTAAGAGTGAAGGC 57.549 50.000 0.00 0.00 44.43 4.35
170 171 0.242825 TCCACGTAAGAGTGAAGGCG 59.757 55.000 0.00 0.00 44.43 5.52
171 172 0.038526 CCACGTAAGAGTGAAGGCGT 60.039 55.000 0.00 0.00 44.43 5.68
172 173 1.060713 CACGTAAGAGTGAAGGCGTG 58.939 55.000 0.00 0.00 44.43 5.34
173 174 0.956633 ACGTAAGAGTGAAGGCGTGA 59.043 50.000 0.00 0.00 43.62 4.35
174 175 1.338973 ACGTAAGAGTGAAGGCGTGAA 59.661 47.619 0.00 0.00 43.62 3.18
175 176 1.986378 CGTAAGAGTGAAGGCGTGAAG 59.014 52.381 0.00 0.00 43.02 3.02
176 177 3.795272 CGTAAGAGTGAAGGCGTGAAGC 61.795 54.545 0.00 0.00 43.71 3.86
189 190 3.933155 CGTGAAGCACTACATTCATCC 57.067 47.619 0.00 0.00 37.72 3.51
190 191 3.261580 CGTGAAGCACTACATTCATCCA 58.738 45.455 0.00 0.00 37.72 3.41
191 192 3.684305 CGTGAAGCACTACATTCATCCAA 59.316 43.478 0.00 0.00 37.72 3.53
192 193 4.436050 CGTGAAGCACTACATTCATCCAAC 60.436 45.833 0.00 0.00 37.72 3.77
193 194 4.009675 TGAAGCACTACATTCATCCAACC 58.990 43.478 0.00 0.00 30.67 3.77
194 195 3.004752 AGCACTACATTCATCCAACCC 57.995 47.619 0.00 0.00 0.00 4.11
195 196 2.308570 AGCACTACATTCATCCAACCCA 59.691 45.455 0.00 0.00 0.00 4.51
196 197 3.088532 GCACTACATTCATCCAACCCAA 58.911 45.455 0.00 0.00 0.00 4.12
197 198 3.129287 GCACTACATTCATCCAACCCAAG 59.871 47.826 0.00 0.00 0.00 3.61
198 199 4.588899 CACTACATTCATCCAACCCAAGA 58.411 43.478 0.00 0.00 0.00 3.02
199 200 5.195940 CACTACATTCATCCAACCCAAGAT 58.804 41.667 0.00 0.00 0.00 2.40
200 201 5.066893 CACTACATTCATCCAACCCAAGATG 59.933 44.000 0.00 0.00 41.05 2.90
201 202 3.368248 ACATTCATCCAACCCAAGATGG 58.632 45.455 0.00 0.00 40.27 3.51
202 203 3.245730 ACATTCATCCAACCCAAGATGGT 60.246 43.478 0.00 0.00 40.27 3.55
203 204 2.806945 TCATCCAACCCAAGATGGTC 57.193 50.000 0.00 0.00 40.27 4.02
204 205 1.284785 TCATCCAACCCAAGATGGTCC 59.715 52.381 0.00 0.00 40.27 4.46
205 206 0.631212 ATCCAACCCAAGATGGTCCC 59.369 55.000 0.00 0.00 37.76 4.46
206 207 1.000359 CCAACCCAAGATGGTCCCC 60.000 63.158 0.00 0.00 37.76 4.81
207 208 1.509548 CCAACCCAAGATGGTCCCCT 61.510 60.000 0.00 0.00 37.76 4.79
208 209 0.034089 CAACCCAAGATGGTCCCCTC 60.034 60.000 0.00 0.00 37.76 4.30
209 210 1.562672 AACCCAAGATGGTCCCCTCG 61.563 60.000 0.00 0.00 37.76 4.63
210 211 2.190578 CCAAGATGGTCCCCTCGC 59.809 66.667 0.00 0.00 31.35 5.03
211 212 2.202932 CAAGATGGTCCCCTCGCG 60.203 66.667 0.00 0.00 0.00 5.87
212 213 2.683933 AAGATGGTCCCCTCGCGT 60.684 61.111 5.77 0.00 0.00 6.01
213 214 3.019003 AAGATGGTCCCCTCGCGTG 62.019 63.158 5.77 2.75 0.00 5.34
214 215 3.771160 GATGGTCCCCTCGCGTGT 61.771 66.667 5.77 0.00 0.00 4.49
215 216 3.718210 GATGGTCCCCTCGCGTGTC 62.718 68.421 5.77 0.00 0.00 3.67
217 218 3.771160 GGTCCCCTCGCGTGTCAT 61.771 66.667 5.77 0.00 0.00 3.06
218 219 2.202756 GTCCCCTCGCGTGTCATC 60.203 66.667 5.77 0.00 0.00 2.92
219 220 2.362503 TCCCCTCGCGTGTCATCT 60.363 61.111 5.77 0.00 0.00 2.90
220 221 2.105128 CCCCTCGCGTGTCATCTC 59.895 66.667 5.77 0.00 0.00 2.75
221 222 2.418910 CCCCTCGCGTGTCATCTCT 61.419 63.158 5.77 0.00 0.00 3.10
222 223 1.064946 CCCTCGCGTGTCATCTCTC 59.935 63.158 5.77 0.00 0.00 3.20
223 224 1.380403 CCCTCGCGTGTCATCTCTCT 61.380 60.000 5.77 0.00 0.00 3.10
224 225 0.248417 CCTCGCGTGTCATCTCTCTG 60.248 60.000 5.77 0.00 0.00 3.35
225 226 0.865218 CTCGCGTGTCATCTCTCTGC 60.865 60.000 5.77 0.00 0.00 4.26
226 227 1.138459 CGCGTGTCATCTCTCTGCT 59.862 57.895 0.00 0.00 0.00 4.24
227 228 0.865218 CGCGTGTCATCTCTCTGCTC 60.865 60.000 0.00 0.00 0.00 4.26
228 229 0.172127 GCGTGTCATCTCTCTGCTCA 59.828 55.000 0.00 0.00 0.00 4.26
229 230 1.202394 GCGTGTCATCTCTCTGCTCAT 60.202 52.381 0.00 0.00 0.00 2.90
230 231 2.730069 CGTGTCATCTCTCTGCTCATC 58.270 52.381 0.00 0.00 0.00 2.92
231 232 2.358582 CGTGTCATCTCTCTGCTCATCT 59.641 50.000 0.00 0.00 0.00 2.90
232 233 3.181488 CGTGTCATCTCTCTGCTCATCTT 60.181 47.826 0.00 0.00 0.00 2.40
233 234 4.677514 CGTGTCATCTCTCTGCTCATCTTT 60.678 45.833 0.00 0.00 0.00 2.52
234 235 5.177326 GTGTCATCTCTCTGCTCATCTTTT 58.823 41.667 0.00 0.00 0.00 2.27
235 236 5.642919 GTGTCATCTCTCTGCTCATCTTTTT 59.357 40.000 0.00 0.00 0.00 1.94
255 256 5.920193 TTTTCTCCTAAGCCCAAATCATG 57.080 39.130 0.00 0.00 0.00 3.07
256 257 4.591321 TTCTCCTAAGCCCAAATCATGT 57.409 40.909 0.00 0.00 0.00 3.21
257 258 5.708736 TTCTCCTAAGCCCAAATCATGTA 57.291 39.130 0.00 0.00 0.00 2.29
258 259 5.912149 TCTCCTAAGCCCAAATCATGTAT 57.088 39.130 0.00 0.00 0.00 2.29
259 260 7.387265 TTCTCCTAAGCCCAAATCATGTATA 57.613 36.000 0.00 0.00 0.00 1.47
260 261 6.769512 TCTCCTAAGCCCAAATCATGTATAC 58.230 40.000 0.00 0.00 0.00 1.47
261 262 6.558775 TCTCCTAAGCCCAAATCATGTATACT 59.441 38.462 4.17 0.00 0.00 2.12
262 263 7.072454 TCTCCTAAGCCCAAATCATGTATACTT 59.928 37.037 4.17 0.00 0.00 2.24
263 264 7.582719 TCCTAAGCCCAAATCATGTATACTTT 58.417 34.615 4.17 0.00 0.00 2.66
264 265 8.719596 TCCTAAGCCCAAATCATGTATACTTTA 58.280 33.333 4.17 0.00 0.00 1.85
265 266 9.003658 CCTAAGCCCAAATCATGTATACTTTAG 57.996 37.037 4.17 0.00 0.00 1.85
266 267 9.561069 CTAAGCCCAAATCATGTATACTTTAGT 57.439 33.333 4.17 0.00 0.00 2.24
267 268 8.451908 AAGCCCAAATCATGTATACTTTAGTC 57.548 34.615 4.17 0.00 0.00 2.59
268 269 6.998673 AGCCCAAATCATGTATACTTTAGTCC 59.001 38.462 4.17 0.00 0.00 3.85
269 270 6.770785 GCCCAAATCATGTATACTTTAGTCCA 59.229 38.462 4.17 0.00 0.00 4.02
270 271 7.448469 GCCCAAATCATGTATACTTTAGTCCAT 59.552 37.037 4.17 0.00 0.00 3.41
271 272 9.003658 CCCAAATCATGTATACTTTAGTCCATC 57.996 37.037 4.17 0.00 0.00 3.51
272 273 8.712363 CCAAATCATGTATACTTTAGTCCATCG 58.288 37.037 4.17 0.00 0.00 3.84
273 274 7.891183 AATCATGTATACTTTAGTCCATCGC 57.109 36.000 4.17 0.00 0.00 4.58
274 275 6.650427 TCATGTATACTTTAGTCCATCGCT 57.350 37.500 4.17 0.00 0.00 4.93
275 276 7.050970 TCATGTATACTTTAGTCCATCGCTT 57.949 36.000 4.17 0.00 0.00 4.68
276 277 7.497595 TCATGTATACTTTAGTCCATCGCTTT 58.502 34.615 4.17 0.00 0.00 3.51
277 278 7.438160 TCATGTATACTTTAGTCCATCGCTTTG 59.562 37.037 4.17 0.00 0.00 2.77
278 279 5.522460 TGTATACTTTAGTCCATCGCTTTGC 59.478 40.000 4.17 0.00 0.00 3.68
279 280 2.084546 ACTTTAGTCCATCGCTTTGCC 58.915 47.619 0.00 0.00 0.00 4.52
280 281 2.290323 ACTTTAGTCCATCGCTTTGCCT 60.290 45.455 0.00 0.00 0.00 4.75
281 282 2.024176 TTAGTCCATCGCTTTGCCTC 57.976 50.000 0.00 0.00 0.00 4.70
282 283 1.195115 TAGTCCATCGCTTTGCCTCT 58.805 50.000 0.00 0.00 0.00 3.69
283 284 0.326264 AGTCCATCGCTTTGCCTCTT 59.674 50.000 0.00 0.00 0.00 2.85
284 285 1.168714 GTCCATCGCTTTGCCTCTTT 58.831 50.000 0.00 0.00 0.00 2.52
285 286 1.131315 GTCCATCGCTTTGCCTCTTTC 59.869 52.381 0.00 0.00 0.00 2.62
286 287 1.003580 TCCATCGCTTTGCCTCTTTCT 59.996 47.619 0.00 0.00 0.00 2.52
287 288 1.815003 CCATCGCTTTGCCTCTTTCTT 59.185 47.619 0.00 0.00 0.00 2.52
288 289 2.159462 CCATCGCTTTGCCTCTTTCTTC 60.159 50.000 0.00 0.00 0.00 2.87
289 290 2.550830 TCGCTTTGCCTCTTTCTTCT 57.449 45.000 0.00 0.00 0.00 2.85
290 291 2.417719 TCGCTTTGCCTCTTTCTTCTC 58.582 47.619 0.00 0.00 0.00 2.87
291 292 2.037772 TCGCTTTGCCTCTTTCTTCTCT 59.962 45.455 0.00 0.00 0.00 3.10
292 293 2.810852 CGCTTTGCCTCTTTCTTCTCTT 59.189 45.455 0.00 0.00 0.00 2.85
293 294 3.251972 CGCTTTGCCTCTTTCTTCTCTTT 59.748 43.478 0.00 0.00 0.00 2.52
294 295 4.612486 CGCTTTGCCTCTTTCTTCTCTTTC 60.612 45.833 0.00 0.00 0.00 2.62
295 296 4.518590 GCTTTGCCTCTTTCTTCTCTTTCT 59.481 41.667 0.00 0.00 0.00 2.52
296 297 5.334802 GCTTTGCCTCTTTCTTCTCTTTCTC 60.335 44.000 0.00 0.00 0.00 2.87
297 298 5.559148 TTGCCTCTTTCTTCTCTTTCTCT 57.441 39.130 0.00 0.00 0.00 3.10
298 299 5.146010 TGCCTCTTTCTTCTCTTTCTCTC 57.854 43.478 0.00 0.00 0.00 3.20
299 300 4.020662 TGCCTCTTTCTTCTCTTTCTCTCC 60.021 45.833 0.00 0.00 0.00 3.71
300 301 4.222810 GCCTCTTTCTTCTCTTTCTCTCCT 59.777 45.833 0.00 0.00 0.00 3.69
301 302 5.279960 GCCTCTTTCTTCTCTTTCTCTCCTT 60.280 44.000 0.00 0.00 0.00 3.36
302 303 6.744056 GCCTCTTTCTTCTCTTTCTCTCCTTT 60.744 42.308 0.00 0.00 0.00 3.11
303 304 7.223584 CCTCTTTCTTCTCTTTCTCTCCTTTT 58.776 38.462 0.00 0.00 0.00 2.27
304 305 7.387673 CCTCTTTCTTCTCTTTCTCTCCTTTTC 59.612 40.741 0.00 0.00 0.00 2.29
305 306 8.028652 TCTTTCTTCTCTTTCTCTCCTTTTCT 57.971 34.615 0.00 0.00 0.00 2.52
306 307 7.930865 TCTTTCTTCTCTTTCTCTCCTTTTCTG 59.069 37.037 0.00 0.00 0.00 3.02
307 308 6.107901 TCTTCTCTTTCTCTCCTTTTCTGG 57.892 41.667 0.00 0.00 0.00 3.86
308 309 5.604650 TCTTCTCTTTCTCTCCTTTTCTGGT 59.395 40.000 0.00 0.00 0.00 4.00
309 310 5.220710 TCTCTTTCTCTCCTTTTCTGGTG 57.779 43.478 0.00 0.00 0.00 4.17
310 311 4.901849 TCTCTTTCTCTCCTTTTCTGGTGA 59.098 41.667 0.00 0.00 0.00 4.02
311 312 5.366768 TCTCTTTCTCTCCTTTTCTGGTGAA 59.633 40.000 0.00 0.00 0.00 3.18
312 313 5.615289 TCTTTCTCTCCTTTTCTGGTGAAG 58.385 41.667 0.00 0.00 33.28 3.02
313 314 3.409026 TCTCTCCTTTTCTGGTGAAGC 57.591 47.619 0.00 0.00 33.28 3.86
314 315 2.705658 TCTCTCCTTTTCTGGTGAAGCA 59.294 45.455 0.00 0.00 33.28 3.91
315 316 2.810852 CTCTCCTTTTCTGGTGAAGCAC 59.189 50.000 0.00 0.00 33.28 4.40
323 324 4.021925 GGTGAAGCACCGGCCTCT 62.022 66.667 0.00 0.00 44.95 3.69
324 325 2.032681 GTGAAGCACCGGCCTCTT 59.967 61.111 0.00 1.54 42.56 2.85
325 326 1.600916 GTGAAGCACCGGCCTCTTT 60.601 57.895 0.00 0.00 42.56 2.52
326 327 1.150536 TGAAGCACCGGCCTCTTTT 59.849 52.632 0.00 0.00 42.56 2.27
327 328 1.172180 TGAAGCACCGGCCTCTTTTG 61.172 55.000 0.00 0.00 42.56 2.44
328 329 2.477972 GAAGCACCGGCCTCTTTTGC 62.478 60.000 0.00 1.08 42.56 3.68
329 330 3.294493 GCACCGGCCTCTTTTGCA 61.294 61.111 0.00 0.00 33.24 4.08
330 331 2.956987 CACCGGCCTCTTTTGCAG 59.043 61.111 0.00 0.00 0.00 4.41
332 333 2.034066 CCGGCCTCTTTTGCAGGA 59.966 61.111 0.00 0.00 45.52 3.86
333 334 1.603455 CCGGCCTCTTTTGCAGGAA 60.603 57.895 0.00 0.00 45.52 3.36
334 335 1.581447 CGGCCTCTTTTGCAGGAAC 59.419 57.895 0.00 0.00 31.91 3.62
335 336 1.866853 CGGCCTCTTTTGCAGGAACC 61.867 60.000 0.00 0.00 31.91 3.62
336 337 1.536073 GGCCTCTTTTGCAGGAACCC 61.536 60.000 0.00 0.00 31.91 4.11
337 338 1.866853 GCCTCTTTTGCAGGAACCCG 61.867 60.000 0.00 0.00 31.91 5.28
338 339 0.537371 CCTCTTTTGCAGGAACCCGT 60.537 55.000 0.00 0.00 31.91 5.28
339 340 1.318576 CTCTTTTGCAGGAACCCGTT 58.681 50.000 0.00 0.00 0.00 4.44
340 341 1.681264 CTCTTTTGCAGGAACCCGTTT 59.319 47.619 0.00 0.00 0.00 3.60
341 342 1.407258 TCTTTTGCAGGAACCCGTTTG 59.593 47.619 0.00 0.00 0.00 2.93
342 343 1.407258 CTTTTGCAGGAACCCGTTTGA 59.593 47.619 0.00 0.00 0.00 2.69
343 344 0.741915 TTTGCAGGAACCCGTTTGAC 59.258 50.000 0.00 0.00 0.00 3.18
344 345 1.104577 TTGCAGGAACCCGTTTGACC 61.105 55.000 0.00 0.00 0.00 4.02
345 346 2.265904 GCAGGAACCCGTTTGACCC 61.266 63.158 0.00 0.00 0.00 4.46
346 347 1.454539 CAGGAACCCGTTTGACCCT 59.545 57.895 0.00 0.00 0.00 4.34
347 348 0.889186 CAGGAACCCGTTTGACCCTG 60.889 60.000 0.00 0.00 35.75 4.45
348 349 2.265904 GGAACCCGTTTGACCCTGC 61.266 63.158 0.00 0.00 0.00 4.85
349 350 1.527380 GAACCCGTTTGACCCTGCA 60.527 57.895 0.00 0.00 0.00 4.41
350 351 1.515521 GAACCCGTTTGACCCTGCAG 61.516 60.000 6.78 6.78 0.00 4.41
351 352 2.672996 CCCGTTTGACCCTGCAGG 60.673 66.667 26.87 26.87 43.78 4.85
352 353 3.365265 CCGTTTGACCCTGCAGGC 61.365 66.667 28.39 15.38 40.58 4.85
353 354 2.594303 CGTTTGACCCTGCAGGCA 60.594 61.111 28.39 18.04 40.58 4.75
354 355 2.620112 CGTTTGACCCTGCAGGCAG 61.620 63.158 28.39 17.26 43.26 4.85
355 356 2.598394 TTTGACCCTGCAGGCAGC 60.598 61.111 28.39 17.83 42.35 5.25
356 357 3.137385 TTTGACCCTGCAGGCAGCT 62.137 57.895 28.39 8.73 45.94 4.24
357 358 1.778017 TTTGACCCTGCAGGCAGCTA 61.778 55.000 28.39 12.00 45.94 3.32
358 359 2.124942 GACCCTGCAGGCAGCTAC 60.125 66.667 28.39 9.88 45.94 3.58
359 360 3.689002 GACCCTGCAGGCAGCTACC 62.689 68.421 28.39 6.37 45.94 3.18
360 361 3.406200 CCCTGCAGGCAGCTACCT 61.406 66.667 28.39 0.00 45.94 3.08
361 362 2.673523 CCTGCAGGCAGCTACCTT 59.326 61.111 22.33 0.00 45.94 3.50
362 363 1.001641 CCTGCAGGCAGCTACCTTT 60.002 57.895 22.33 0.00 45.94 3.11
363 364 0.610232 CCTGCAGGCAGCTACCTTTT 60.610 55.000 22.33 0.00 45.94 2.27
364 365 1.251251 CTGCAGGCAGCTACCTTTTT 58.749 50.000 1.46 0.00 45.94 1.94
365 366 2.436417 CTGCAGGCAGCTACCTTTTTA 58.564 47.619 1.46 0.00 45.94 1.52
366 367 2.159382 TGCAGGCAGCTACCTTTTTAC 58.841 47.619 1.46 0.00 45.94 2.01
367 368 2.224769 TGCAGGCAGCTACCTTTTTACT 60.225 45.455 1.46 0.00 45.94 2.24
368 369 2.820197 GCAGGCAGCTACCTTTTTACTT 59.180 45.455 1.46 0.00 38.26 2.24
369 370 3.255888 GCAGGCAGCTACCTTTTTACTTT 59.744 43.478 1.46 0.00 38.26 2.66
370 371 4.262036 GCAGGCAGCTACCTTTTTACTTTT 60.262 41.667 1.46 0.00 38.26 2.27
371 372 5.739070 GCAGGCAGCTACCTTTTTACTTTTT 60.739 40.000 1.46 0.00 38.26 1.94
389 390 4.439305 TTTTTCCTCCAAGATTGCATCG 57.561 40.909 0.00 0.00 0.00 3.84
390 391 1.382522 TTCCTCCAAGATTGCATCGC 58.617 50.000 0.00 0.00 0.00 4.58
391 392 0.252761 TCCTCCAAGATTGCATCGCA 59.747 50.000 0.00 0.00 36.47 5.10
392 393 1.134007 TCCTCCAAGATTGCATCGCAT 60.134 47.619 0.00 0.00 38.76 4.73
393 394 1.266175 CCTCCAAGATTGCATCGCATC 59.734 52.381 0.00 0.00 38.76 3.91
394 395 0.939419 TCCAAGATTGCATCGCATCG 59.061 50.000 0.00 0.00 38.76 3.84
395 396 0.040692 CCAAGATTGCATCGCATCGG 60.041 55.000 0.00 0.00 38.76 4.18
396 397 0.939419 CAAGATTGCATCGCATCGGA 59.061 50.000 0.00 0.00 38.76 4.55
397 398 0.940126 AAGATTGCATCGCATCGGAC 59.060 50.000 0.00 0.00 38.76 4.79
398 399 1.202568 GATTGCATCGCATCGGACG 59.797 57.895 0.00 0.00 38.76 4.79
399 400 1.490693 GATTGCATCGCATCGGACGT 61.491 55.000 0.00 0.00 38.76 4.34
400 401 1.765161 ATTGCATCGCATCGGACGTG 61.765 55.000 0.00 0.00 38.76 4.49
401 402 2.885644 GCATCGCATCGGACGTGT 60.886 61.111 0.00 0.00 0.00 4.49
402 403 1.587876 GCATCGCATCGGACGTGTA 60.588 57.895 0.00 0.00 0.00 2.90
403 404 1.540607 GCATCGCATCGGACGTGTAG 61.541 60.000 0.00 0.00 0.00 2.74
404 405 0.934901 CATCGCATCGGACGTGTAGG 60.935 60.000 0.00 0.00 0.00 3.18
405 406 2.071844 ATCGCATCGGACGTGTAGGG 62.072 60.000 0.00 0.00 0.00 3.53
406 407 2.585247 GCATCGGACGTGTAGGGC 60.585 66.667 0.00 0.00 0.00 5.19
407 408 3.077519 GCATCGGACGTGTAGGGCT 62.078 63.158 0.00 0.00 0.00 5.19
408 409 1.226974 CATCGGACGTGTAGGGCTG 60.227 63.158 0.00 0.00 0.00 4.85
409 410 2.423898 ATCGGACGTGTAGGGCTGG 61.424 63.158 0.00 0.00 0.00 4.85
410 411 4.143333 CGGACGTGTAGGGCTGGG 62.143 72.222 0.00 0.00 0.00 4.45
411 412 3.782443 GGACGTGTAGGGCTGGGG 61.782 72.222 0.00 0.00 0.00 4.96
412 413 4.468689 GACGTGTAGGGCTGGGGC 62.469 72.222 0.00 0.00 37.82 5.80
414 415 4.473520 CGTGTAGGGCTGGGGCAG 62.474 72.222 0.00 0.00 40.87 4.85
426 427 2.719739 CTGGGGCAGCTATCCAATATG 58.280 52.381 6.53 0.00 0.00 1.78
427 428 1.355381 TGGGGCAGCTATCCAATATGG 59.645 52.381 6.53 0.00 39.43 2.74
436 437 3.094386 TCCAATATGGAGCGTTGGC 57.906 52.632 0.00 0.00 42.67 4.52
437 438 0.465460 TCCAATATGGAGCGTTGGCC 60.465 55.000 0.00 0.00 42.67 5.36
438 439 0.751277 CCAATATGGAGCGTTGGCCA 60.751 55.000 0.00 0.00 40.96 5.36
439 440 1.321474 CAATATGGAGCGTTGGCCAT 58.679 50.000 6.09 0.00 46.21 4.40
440 441 1.001048 CAATATGGAGCGTTGGCCATG 60.001 52.381 6.09 3.11 44.30 3.66
441 442 0.183492 ATATGGAGCGTTGGCCATGT 59.817 50.000 6.09 0.00 44.30 3.21
442 443 0.463654 TATGGAGCGTTGGCCATGTC 60.464 55.000 6.09 0.34 44.30 3.06
443 444 3.134127 GGAGCGTTGGCCATGTCC 61.134 66.667 6.09 6.87 41.24 4.02
444 445 2.045926 GAGCGTTGGCCATGTCCT 60.046 61.111 6.09 0.00 41.24 3.85
445 446 2.045926 AGCGTTGGCCATGTCCTC 60.046 61.111 6.09 0.00 41.24 3.71
446 447 2.359850 GCGTTGGCCATGTCCTCA 60.360 61.111 6.09 0.00 0.00 3.86
459 460 5.627735 GCCATGTCCTCAGAGAAGTAATCAA 60.628 44.000 0.00 0.00 0.00 2.57
468 469 3.198853 AGAGAAGTAATCAAGGGTGCTCC 59.801 47.826 0.00 0.00 0.00 4.70
474 475 2.898920 ATCAAGGGTGCTCCATGGCG 62.899 60.000 6.96 0.71 38.24 5.69
476 477 3.628646 AAGGGTGCTCCATGGCGAC 62.629 63.158 6.96 2.86 38.24 5.19
497 498 5.234466 ACAGATGAAGCCCTATTGATACC 57.766 43.478 0.00 0.00 0.00 2.73
520 521 5.209977 CCAAGCAATGACATCATTACATCG 58.790 41.667 6.79 0.00 44.10 3.84
529 530 4.060900 ACATCATTACATCGACCATCAGC 58.939 43.478 0.00 0.00 0.00 4.26
552 553 1.458777 ATGGGCATTGGGCTGGATG 60.459 57.895 0.00 0.00 44.01 3.51
553 554 2.841044 GGGCATTGGGCTGGATGG 60.841 66.667 0.00 0.00 44.01 3.51
555 556 1.686800 GGCATTGGGCTGGATGGTT 60.687 57.895 0.00 0.00 44.01 3.67
601 602 1.424403 TATGTTGCCGTTGTGTCGAG 58.576 50.000 0.00 0.00 0.00 4.04
602 603 0.531974 ATGTTGCCGTTGTGTCGAGT 60.532 50.000 0.00 0.00 0.00 4.18
603 604 1.149361 TGTTGCCGTTGTGTCGAGTC 61.149 55.000 0.00 0.00 0.00 3.36
604 605 1.947146 TTGCCGTTGTGTCGAGTCG 60.947 57.895 6.09 6.09 0.00 4.18
622 623 0.101399 CGGTTCGTCCCTCATGAGAG 59.899 60.000 24.62 11.58 41.72 3.20
738 739 0.818040 AAGTCCAAGTGCCCAACGAC 60.818 55.000 0.00 0.00 0.00 4.34
789 792 1.068474 GCGACTGGTACACACATCAC 58.932 55.000 0.00 0.00 0.00 3.06
810 3434 3.828451 ACCTGCAATGCAACAAGTAGAAT 59.172 39.130 9.92 0.00 38.41 2.40
840 3464 0.958822 ACAAATTTCGGCCACCAGAC 59.041 50.000 2.24 0.00 0.00 3.51
841 3465 0.243636 CAAATTTCGGCCACCAGACC 59.756 55.000 2.24 0.00 0.00 3.85
842 3466 0.112412 AAATTTCGGCCACCAGACCT 59.888 50.000 2.24 0.00 0.00 3.85
843 3467 0.609131 AATTTCGGCCACCAGACCTG 60.609 55.000 2.24 0.00 0.00 4.00
844 3468 3.842925 TTTCGGCCACCAGACCTGC 62.843 63.158 2.24 0.00 0.00 4.85
847 3471 3.958860 GGCCACCAGACCTGCAGT 61.959 66.667 13.81 0.11 0.00 4.40
848 3472 2.670934 GCCACCAGACCTGCAGTG 60.671 66.667 13.81 6.81 0.00 3.66
849 3473 2.831770 CCACCAGACCTGCAGTGT 59.168 61.111 13.81 10.29 0.00 3.55
850 3474 1.598962 CCACCAGACCTGCAGTGTG 60.599 63.158 13.81 11.03 39.46 3.82
877 3501 2.362369 CCAGACAGACCATCGGCCT 61.362 63.158 0.00 0.00 0.00 5.19
900 3524 5.168569 TCTATAAATCATCGGTTCGCCATC 58.831 41.667 0.00 0.00 37.00 3.51
948 3572 1.233019 CACTCCAAAGCAGACACCAG 58.767 55.000 0.00 0.00 0.00 4.00
957 3581 1.598962 CAGACACCAGCACCACAGG 60.599 63.158 0.00 0.00 0.00 4.00
958 3582 2.980233 GACACCAGCACCACAGGC 60.980 66.667 0.00 0.00 0.00 4.85
959 3583 4.935495 ACACCAGCACCACAGGCG 62.935 66.667 0.00 0.00 36.08 5.52
960 3584 4.935495 CACCAGCACCACAGGCGT 62.935 66.667 0.00 0.00 36.08 5.68
961 3585 4.626081 ACCAGCACCACAGGCGTC 62.626 66.667 0.00 0.00 36.08 5.19
962 3586 4.320456 CCAGCACCACAGGCGTCT 62.320 66.667 0.00 0.00 36.08 4.18
963 3587 3.046087 CAGCACCACAGGCGTCTG 61.046 66.667 17.12 17.12 46.10 3.51
1242 3869 2.490217 CGTCTCCCGCAAGTCGAT 59.510 61.111 0.00 0.00 41.67 3.59
1262 3889 0.814010 CTCCCGCCCGTAAAATCCAG 60.814 60.000 0.00 0.00 0.00 3.86
1268 3895 0.034477 CCCGTAAAATCCAGCCACCT 60.034 55.000 0.00 0.00 0.00 4.00
1377 4010 4.237724 CAGACTTCTTCTGTAATGTCGCA 58.762 43.478 0.00 0.00 46.12 5.10
1384 4017 3.186047 GTAATGTCGCACGCGGCT 61.186 61.111 17.65 0.00 45.16 5.52
1481 4114 2.581354 GGTCCTGCACGCTCAGAT 59.419 61.111 6.13 0.00 36.19 2.90
1482 4115 1.078848 GGTCCTGCACGCTCAGATT 60.079 57.895 6.13 0.00 36.19 2.40
1585 4219 2.631267 CAATCATGGACCGTGATGACA 58.369 47.619 26.51 2.28 38.92 3.58
1977 4623 1.005394 GAAGAAGTTCGACGGGCCA 60.005 57.895 4.39 0.00 0.00 5.36
2037 4683 0.178955 TGGACCGTACCAAGGAGACA 60.179 55.000 0.00 0.00 36.96 3.41
2040 4686 1.218316 CCGTACCAAGGAGACAGGC 59.782 63.158 0.00 0.00 0.00 4.85
2238 4886 0.748005 TTGGGCTAGCTTTGGCGATC 60.748 55.000 15.72 0.00 44.37 3.69
2275 4929 3.992641 TGGTGGAGGCCGAGGAGA 61.993 66.667 0.00 0.00 0.00 3.71
2442 5135 2.409975 GTACTTGCTTGACGTTGGCTA 58.590 47.619 0.00 0.00 0.00 3.93
2477 5170 0.179121 GATCCGGTGATGCACGTGTA 60.179 55.000 18.38 14.09 34.83 2.90
2491 5195 1.827315 CGTGTAGCGTGGTTGTGTGG 61.827 60.000 0.00 0.00 35.54 4.17
2524 5551 8.690680 TTAAGTTGTTGCGAAAATAAACAAGT 57.309 26.923 0.73 1.82 45.02 3.16
2525 5552 9.784680 TTAAGTTGTTGCGAAAATAAACAAGTA 57.215 25.926 7.93 0.00 43.29 2.24
2526 5553 7.908193 AGTTGTTGCGAAAATAAACAAGTAG 57.092 32.000 6.15 0.00 42.65 2.57
2527 5554 7.477494 AGTTGTTGCGAAAATAAACAAGTAGT 58.523 30.769 6.15 0.00 42.65 2.73
2528 5555 8.614346 AGTTGTTGCGAAAATAAACAAGTAGTA 58.386 29.630 6.15 0.00 42.65 1.82
2529 5556 8.889000 GTTGTTGCGAAAATAAACAAGTAGTAG 58.111 33.333 0.73 0.00 42.65 2.57
2585 5612 9.898152 TTTCCTTTTTACCAATTTCAGTTTCAT 57.102 25.926 0.00 0.00 0.00 2.57
2586 5613 9.898152 TTCCTTTTTACCAATTTCAGTTTCATT 57.102 25.926 0.00 0.00 0.00 2.57
2587 5614 9.898152 TCCTTTTTACCAATTTCAGTTTCATTT 57.102 25.926 0.00 0.00 0.00 2.32
2588 5615 9.934190 CCTTTTTACCAATTTCAGTTTCATTTG 57.066 29.630 0.00 0.00 0.00 2.32
2621 5648 8.806146 ACTTGTATCTTACATTTGGAAGCAAAT 58.194 29.630 0.00 0.00 38.68 2.32
2709 5736 6.215431 TGAGATTTGAGGGATTTGAGTTAGGA 59.785 38.462 0.00 0.00 0.00 2.94
2744 5771 4.561326 CGTGAAGAGCATTTGGGGAATTTT 60.561 41.667 0.00 0.00 0.00 1.82
2745 5772 4.931601 GTGAAGAGCATTTGGGGAATTTTC 59.068 41.667 0.00 0.00 0.00 2.29
2746 5773 4.592351 TGAAGAGCATTTGGGGAATTTTCA 59.408 37.500 0.00 0.00 0.00 2.69
2759 5786 4.884164 GGGAATTTTCAGATCGTTCCTCAT 59.116 41.667 0.00 0.00 38.65 2.90
2769 5796 3.887621 TCGTTCCTCATCGATCCTTTT 57.112 42.857 0.00 0.00 0.00 2.27
2771 5798 5.333299 TCGTTCCTCATCGATCCTTTTTA 57.667 39.130 0.00 0.00 0.00 1.52
2859 5888 2.097110 TCTGTACACCAACACTCCCT 57.903 50.000 0.00 0.00 0.00 4.20
2869 5899 2.568956 CCAACACTCCCTCTCAAGATGA 59.431 50.000 0.00 0.00 0.00 2.92
2881 5912 4.914983 TCTCAAGATGAGGCAAAGATGTT 58.085 39.130 7.47 0.00 44.39 2.71
2908 5939 4.074970 AGACCCATCTTGCTACAAAACAG 58.925 43.478 0.00 0.00 0.00 3.16
2975 6006 5.238583 ACTTGACTGGCTGAAGTTACATAC 58.761 41.667 0.00 0.00 0.00 2.39
3062 6093 2.621338 GTTCGATCATGCTGAACAGGA 58.379 47.619 15.31 1.03 44.44 3.86
3174 6205 7.992608 TCTGCAACCATAATAACTCACATATGT 59.007 33.333 1.41 1.41 0.00 2.29
3196 6228 4.160626 GTGTGAGCCATAGACCTAAACTCT 59.839 45.833 0.00 0.00 0.00 3.24
3401 6434 3.103447 GGCACCCTTAAGATACCGTAC 57.897 52.381 3.36 0.00 0.00 3.67
3430 6463 9.154632 TCCTATTTACAGCTTCCATATGAACTA 57.845 33.333 3.65 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.874205 CCATTTCTTGCAAATCCTTATTTTCTA 57.126 29.630 0.00 0.00 32.87 2.10
3 4 8.776376 TCCATTTCTTGCAAATCCTTATTTTC 57.224 30.769 0.00 0.00 32.87 2.29
6 7 6.764560 GCATCCATTTCTTGCAAATCCTTATT 59.235 34.615 0.00 0.00 36.40 1.40
7 8 6.285990 GCATCCATTTCTTGCAAATCCTTAT 58.714 36.000 0.00 0.00 36.40 1.73
8 9 5.395546 GGCATCCATTTCTTGCAAATCCTTA 60.396 40.000 0.00 0.00 38.12 2.69
11 12 3.200483 GGCATCCATTTCTTGCAAATCC 58.800 45.455 0.00 0.00 38.12 3.01
20 21 4.757149 GCTACTTTATCGGCATCCATTTCT 59.243 41.667 0.00 0.00 0.00 2.52
49 50 4.945246 AGTTGTATCTCGTGTGTTGTTCT 58.055 39.130 0.00 0.00 0.00 3.01
60 61 4.601621 TTCTCGACTGAGTTGTATCTCG 57.398 45.455 0.00 0.00 43.09 4.04
89 90 3.367292 GCCCTGATTCGCATTTCTTTCAA 60.367 43.478 0.00 0.00 0.00 2.69
96 97 1.826720 ACATTGCCCTGATTCGCATTT 59.173 42.857 0.00 0.00 34.35 2.32
102 103 3.953612 TCCATTGTACATTGCCCTGATTC 59.046 43.478 11.46 0.00 0.00 2.52
108 109 0.746659 GCCTCCATTGTACATTGCCC 59.253 55.000 11.46 0.00 0.00 5.36
109 110 1.134946 GTGCCTCCATTGTACATTGCC 59.865 52.381 11.46 2.07 0.00 4.52
110 111 2.094675 AGTGCCTCCATTGTACATTGC 58.905 47.619 11.46 2.34 0.00 3.56
111 112 4.517285 ACTAGTGCCTCCATTGTACATTG 58.483 43.478 10.21 10.21 0.00 2.82
112 113 4.844349 ACTAGTGCCTCCATTGTACATT 57.156 40.909 0.00 0.00 0.00 2.71
113 114 6.782988 ACTATACTAGTGCCTCCATTGTACAT 59.217 38.462 5.39 0.00 37.69 2.29
114 115 6.134055 ACTATACTAGTGCCTCCATTGTACA 58.866 40.000 5.39 0.00 37.69 2.90
115 116 6.651975 ACTATACTAGTGCCTCCATTGTAC 57.348 41.667 5.39 0.00 37.69 2.90
128 129 4.171878 TCTGGAGCAGCACTATACTAGT 57.828 45.455 0.00 0.00 40.28 2.57
129 130 5.336372 GGAATCTGGAGCAGCACTATACTAG 60.336 48.000 0.00 0.00 0.00 2.57
130 131 4.524714 GGAATCTGGAGCAGCACTATACTA 59.475 45.833 0.00 0.00 0.00 1.82
131 132 3.323403 GGAATCTGGAGCAGCACTATACT 59.677 47.826 0.00 0.00 0.00 2.12
132 133 3.070159 TGGAATCTGGAGCAGCACTATAC 59.930 47.826 0.00 0.00 0.00 1.47
133 134 3.070159 GTGGAATCTGGAGCAGCACTATA 59.930 47.826 0.00 0.00 0.00 1.31
134 135 2.121948 TGGAATCTGGAGCAGCACTAT 58.878 47.619 0.00 0.00 0.00 2.12
135 136 1.208052 GTGGAATCTGGAGCAGCACTA 59.792 52.381 0.00 0.00 0.00 2.74
136 137 0.035630 GTGGAATCTGGAGCAGCACT 60.036 55.000 0.00 0.00 0.00 4.40
137 138 1.364626 CGTGGAATCTGGAGCAGCAC 61.365 60.000 0.00 0.00 0.00 4.40
138 139 1.078918 CGTGGAATCTGGAGCAGCA 60.079 57.895 0.00 0.00 0.00 4.41
139 140 0.175760 TACGTGGAATCTGGAGCAGC 59.824 55.000 0.00 0.00 0.00 5.25
140 141 2.166459 TCTTACGTGGAATCTGGAGCAG 59.834 50.000 0.00 0.00 0.00 4.24
141 142 2.166459 CTCTTACGTGGAATCTGGAGCA 59.834 50.000 0.00 0.00 0.00 4.26
142 143 2.166664 ACTCTTACGTGGAATCTGGAGC 59.833 50.000 0.00 0.00 0.00 4.70
143 144 3.444034 TCACTCTTACGTGGAATCTGGAG 59.556 47.826 0.00 0.00 35.63 3.86
144 145 3.427573 TCACTCTTACGTGGAATCTGGA 58.572 45.455 0.00 0.00 35.63 3.86
145 146 3.868757 TCACTCTTACGTGGAATCTGG 57.131 47.619 0.00 0.00 35.63 3.86
146 147 4.177026 CCTTCACTCTTACGTGGAATCTG 58.823 47.826 0.00 0.00 35.63 2.90
147 148 3.368531 GCCTTCACTCTTACGTGGAATCT 60.369 47.826 0.00 0.00 35.63 2.40
148 149 2.930682 GCCTTCACTCTTACGTGGAATC 59.069 50.000 0.00 0.00 35.63 2.52
149 150 2.674177 CGCCTTCACTCTTACGTGGAAT 60.674 50.000 0.00 0.00 35.63 3.01
150 151 1.336517 CGCCTTCACTCTTACGTGGAA 60.337 52.381 0.00 0.00 35.63 3.53
151 152 0.242825 CGCCTTCACTCTTACGTGGA 59.757 55.000 0.00 0.00 35.63 4.02
152 153 0.038526 ACGCCTTCACTCTTACGTGG 60.039 55.000 0.00 0.00 35.63 4.94
153 154 1.060713 CACGCCTTCACTCTTACGTG 58.939 55.000 0.00 0.00 43.83 4.49
154 155 0.956633 TCACGCCTTCACTCTTACGT 59.043 50.000 0.00 0.00 0.00 3.57
155 156 1.986378 CTTCACGCCTTCACTCTTACG 59.014 52.381 0.00 0.00 0.00 3.18
156 157 1.727335 GCTTCACGCCTTCACTCTTAC 59.273 52.381 0.00 0.00 0.00 2.34
157 158 1.343142 TGCTTCACGCCTTCACTCTTA 59.657 47.619 0.00 0.00 38.05 2.10
158 159 0.106708 TGCTTCACGCCTTCACTCTT 59.893 50.000 0.00 0.00 38.05 2.85
159 160 0.601311 GTGCTTCACGCCTTCACTCT 60.601 55.000 0.00 0.00 38.05 3.24
160 161 0.601311 AGTGCTTCACGCCTTCACTC 60.601 55.000 0.00 0.00 39.64 3.51
161 162 0.679505 TAGTGCTTCACGCCTTCACT 59.320 50.000 0.00 0.00 39.64 3.41
162 163 0.790814 GTAGTGCTTCACGCCTTCAC 59.209 55.000 0.00 0.00 39.64 3.18
163 164 0.391228 TGTAGTGCTTCACGCCTTCA 59.609 50.000 0.00 0.00 39.64 3.02
164 165 1.726853 ATGTAGTGCTTCACGCCTTC 58.273 50.000 0.00 0.00 39.64 3.46
165 166 2.076863 GAATGTAGTGCTTCACGCCTT 58.923 47.619 0.00 0.00 39.64 4.35
166 167 1.001974 TGAATGTAGTGCTTCACGCCT 59.998 47.619 0.00 0.00 39.64 5.52
167 168 1.438651 TGAATGTAGTGCTTCACGCC 58.561 50.000 0.00 0.00 39.64 5.68
168 169 2.030946 GGATGAATGTAGTGCTTCACGC 59.969 50.000 0.00 0.00 39.64 5.34
169 170 3.261580 TGGATGAATGTAGTGCTTCACG 58.738 45.455 0.00 0.00 39.64 4.35
170 171 4.142600 GGTTGGATGAATGTAGTGCTTCAC 60.143 45.833 0.00 0.00 34.43 3.18
171 172 4.009675 GGTTGGATGAATGTAGTGCTTCA 58.990 43.478 0.00 0.00 35.95 3.02
172 173 3.378427 GGGTTGGATGAATGTAGTGCTTC 59.622 47.826 0.00 0.00 0.00 3.86
173 174 3.245229 TGGGTTGGATGAATGTAGTGCTT 60.245 43.478 0.00 0.00 0.00 3.91
174 175 2.308570 TGGGTTGGATGAATGTAGTGCT 59.691 45.455 0.00 0.00 0.00 4.40
175 176 2.722094 TGGGTTGGATGAATGTAGTGC 58.278 47.619 0.00 0.00 0.00 4.40
176 177 4.588899 TCTTGGGTTGGATGAATGTAGTG 58.411 43.478 0.00 0.00 0.00 2.74
177 178 4.927267 TCTTGGGTTGGATGAATGTAGT 57.073 40.909 0.00 0.00 0.00 2.73
178 179 4.581824 CCATCTTGGGTTGGATGAATGTAG 59.418 45.833 0.00 0.00 41.05 2.74
179 180 4.017591 ACCATCTTGGGTTGGATGAATGTA 60.018 41.667 0.00 0.00 43.37 2.29
180 181 3.245730 ACCATCTTGGGTTGGATGAATGT 60.246 43.478 0.00 0.00 43.37 2.71
181 182 3.368248 ACCATCTTGGGTTGGATGAATG 58.632 45.455 0.00 0.00 43.37 2.67
182 183 3.628257 GGACCATCTTGGGTTGGATGAAT 60.628 47.826 0.00 0.00 43.37 2.57
183 184 2.291540 GGACCATCTTGGGTTGGATGAA 60.292 50.000 0.00 0.00 43.37 2.57
184 185 1.284785 GGACCATCTTGGGTTGGATGA 59.715 52.381 0.00 0.00 43.37 2.92
185 186 1.686115 GGGACCATCTTGGGTTGGATG 60.686 57.143 0.00 0.00 43.37 3.51
186 187 0.631212 GGGACCATCTTGGGTTGGAT 59.369 55.000 0.00 0.00 43.37 3.41
187 188 2.083715 GGGACCATCTTGGGTTGGA 58.916 57.895 0.00 0.00 43.37 3.53
188 189 4.764143 GGGACCATCTTGGGTTGG 57.236 61.111 0.00 0.00 43.37 3.77
201 202 2.202756 GATGACACGCGAGGGGAC 60.203 66.667 15.93 0.00 40.46 4.46
202 203 2.362503 AGATGACACGCGAGGGGA 60.363 61.111 15.93 0.00 40.46 4.81
203 204 2.105128 GAGATGACACGCGAGGGG 59.895 66.667 15.93 1.08 40.46 4.79
204 205 1.064946 GAGAGATGACACGCGAGGG 59.935 63.158 15.93 4.07 43.28 4.30
205 206 0.248417 CAGAGAGATGACACGCGAGG 60.248 60.000 15.93 7.12 0.00 4.63
206 207 0.865218 GCAGAGAGATGACACGCGAG 60.865 60.000 15.93 7.88 0.00 5.03
207 208 1.137614 GCAGAGAGATGACACGCGA 59.862 57.895 15.93 0.00 0.00 5.87
208 209 0.865218 GAGCAGAGAGATGACACGCG 60.865 60.000 3.53 3.53 0.00 6.01
209 210 0.172127 TGAGCAGAGAGATGACACGC 59.828 55.000 0.00 0.00 0.00 5.34
210 211 2.358582 AGATGAGCAGAGAGATGACACG 59.641 50.000 0.00 0.00 0.00 4.49
211 212 4.389890 AAGATGAGCAGAGAGATGACAC 57.610 45.455 0.00 0.00 0.00 3.67
212 213 5.417754 AAAAGATGAGCAGAGAGATGACA 57.582 39.130 0.00 0.00 0.00 3.58
232 233 5.779771 ACATGATTTGGGCTTAGGAGAAAAA 59.220 36.000 0.00 0.00 0.00 1.94
233 234 5.332743 ACATGATTTGGGCTTAGGAGAAAA 58.667 37.500 0.00 0.00 0.00 2.29
234 235 4.934356 ACATGATTTGGGCTTAGGAGAAA 58.066 39.130 0.00 0.00 0.00 2.52
235 236 4.591321 ACATGATTTGGGCTTAGGAGAA 57.409 40.909 0.00 0.00 0.00 2.87
236 237 5.912149 ATACATGATTTGGGCTTAGGAGA 57.088 39.130 0.00 0.00 0.00 3.71
237 238 6.773638 AGTATACATGATTTGGGCTTAGGAG 58.226 40.000 5.50 0.00 0.00 3.69
238 239 6.763715 AGTATACATGATTTGGGCTTAGGA 57.236 37.500 5.50 0.00 0.00 2.94
239 240 7.823745 AAAGTATACATGATTTGGGCTTAGG 57.176 36.000 5.50 0.00 0.00 2.69
240 241 9.561069 ACTAAAGTATACATGATTTGGGCTTAG 57.439 33.333 5.50 0.00 0.00 2.18
241 242 9.555727 GACTAAAGTATACATGATTTGGGCTTA 57.444 33.333 5.50 0.00 0.00 3.09
242 243 7.502561 GGACTAAAGTATACATGATTTGGGCTT 59.497 37.037 5.50 0.00 0.00 4.35
243 244 6.998673 GGACTAAAGTATACATGATTTGGGCT 59.001 38.462 5.50 0.00 0.00 5.19
244 245 6.770785 TGGACTAAAGTATACATGATTTGGGC 59.229 38.462 5.50 1.12 0.00 5.36
245 246 8.924511 ATGGACTAAAGTATACATGATTTGGG 57.075 34.615 5.50 0.00 0.00 4.12
246 247 8.712363 CGATGGACTAAAGTATACATGATTTGG 58.288 37.037 5.50 1.81 0.00 3.28
247 248 8.223769 GCGATGGACTAAAGTATACATGATTTG 58.776 37.037 5.50 0.00 0.00 2.32
248 249 8.150945 AGCGATGGACTAAAGTATACATGATTT 58.849 33.333 5.50 0.00 0.00 2.17
249 250 7.671302 AGCGATGGACTAAAGTATACATGATT 58.329 34.615 5.50 0.00 0.00 2.57
250 251 7.233389 AGCGATGGACTAAAGTATACATGAT 57.767 36.000 5.50 0.00 0.00 2.45
251 252 6.650427 AGCGATGGACTAAAGTATACATGA 57.350 37.500 5.50 0.00 0.00 3.07
252 253 7.567571 CAAAGCGATGGACTAAAGTATACATG 58.432 38.462 5.50 0.00 0.00 3.21
253 254 6.202954 GCAAAGCGATGGACTAAAGTATACAT 59.797 38.462 5.50 0.00 0.00 2.29
254 255 5.522460 GCAAAGCGATGGACTAAAGTATACA 59.478 40.000 5.50 0.00 0.00 2.29
255 256 5.050295 GGCAAAGCGATGGACTAAAGTATAC 60.050 44.000 0.00 0.00 0.00 1.47
256 257 5.054477 GGCAAAGCGATGGACTAAAGTATA 58.946 41.667 0.00 0.00 0.00 1.47
257 258 3.877508 GGCAAAGCGATGGACTAAAGTAT 59.122 43.478 0.00 0.00 0.00 2.12
258 259 3.055385 AGGCAAAGCGATGGACTAAAGTA 60.055 43.478 0.00 0.00 0.00 2.24
259 260 2.084546 GGCAAAGCGATGGACTAAAGT 58.915 47.619 0.00 0.00 0.00 2.66
260 261 2.352960 GAGGCAAAGCGATGGACTAAAG 59.647 50.000 0.00 0.00 0.00 1.85
261 262 2.027192 AGAGGCAAAGCGATGGACTAAA 60.027 45.455 0.00 0.00 0.00 1.85
262 263 1.555075 AGAGGCAAAGCGATGGACTAA 59.445 47.619 0.00 0.00 0.00 2.24
263 264 1.195115 AGAGGCAAAGCGATGGACTA 58.805 50.000 0.00 0.00 0.00 2.59
264 265 0.326264 AAGAGGCAAAGCGATGGACT 59.674 50.000 0.00 0.00 0.00 3.85
265 266 1.131315 GAAAGAGGCAAAGCGATGGAC 59.869 52.381 0.00 0.00 0.00 4.02
266 267 1.003580 AGAAAGAGGCAAAGCGATGGA 59.996 47.619 0.00 0.00 0.00 3.41
267 268 1.457346 AGAAAGAGGCAAAGCGATGG 58.543 50.000 0.00 0.00 0.00 3.51
268 269 2.746362 AGAAGAAAGAGGCAAAGCGATG 59.254 45.455 0.00 0.00 0.00 3.84
269 270 3.006247 GAGAAGAAAGAGGCAAAGCGAT 58.994 45.455 0.00 0.00 0.00 4.58
270 271 2.037772 AGAGAAGAAAGAGGCAAAGCGA 59.962 45.455 0.00 0.00 0.00 4.93
271 272 2.421619 AGAGAAGAAAGAGGCAAAGCG 58.578 47.619 0.00 0.00 0.00 4.68
272 273 4.518590 AGAAAGAGAAGAAAGAGGCAAAGC 59.481 41.667 0.00 0.00 0.00 3.51
273 274 5.997129 AGAGAAAGAGAAGAAAGAGGCAAAG 59.003 40.000 0.00 0.00 0.00 2.77
274 275 5.934781 AGAGAAAGAGAAGAAAGAGGCAAA 58.065 37.500 0.00 0.00 0.00 3.68
275 276 5.512232 GGAGAGAAAGAGAAGAAAGAGGCAA 60.512 44.000 0.00 0.00 0.00 4.52
276 277 4.020662 GGAGAGAAAGAGAAGAAAGAGGCA 60.021 45.833 0.00 0.00 0.00 4.75
277 278 4.222810 AGGAGAGAAAGAGAAGAAAGAGGC 59.777 45.833 0.00 0.00 0.00 4.70
278 279 6.358974 AAGGAGAGAAAGAGAAGAAAGAGG 57.641 41.667 0.00 0.00 0.00 3.69
279 280 8.150296 AGAAAAGGAGAGAAAGAGAAGAAAGAG 58.850 37.037 0.00 0.00 0.00 2.85
280 281 7.930865 CAGAAAAGGAGAGAAAGAGAAGAAAGA 59.069 37.037 0.00 0.00 0.00 2.52
281 282 7.173047 CCAGAAAAGGAGAGAAAGAGAAGAAAG 59.827 40.741 0.00 0.00 0.00 2.62
282 283 6.995091 CCAGAAAAGGAGAGAAAGAGAAGAAA 59.005 38.462 0.00 0.00 0.00 2.52
283 284 6.100424 ACCAGAAAAGGAGAGAAAGAGAAGAA 59.900 38.462 0.00 0.00 0.00 2.52
284 285 5.604650 ACCAGAAAAGGAGAGAAAGAGAAGA 59.395 40.000 0.00 0.00 0.00 2.87
285 286 5.700373 CACCAGAAAAGGAGAGAAAGAGAAG 59.300 44.000 0.00 0.00 0.00 2.85
286 287 5.366768 TCACCAGAAAAGGAGAGAAAGAGAA 59.633 40.000 0.00 0.00 0.00 2.87
287 288 4.901849 TCACCAGAAAAGGAGAGAAAGAGA 59.098 41.667 0.00 0.00 0.00 3.10
288 289 5.220710 TCACCAGAAAAGGAGAGAAAGAG 57.779 43.478 0.00 0.00 0.00 2.85
289 290 5.615289 CTTCACCAGAAAAGGAGAGAAAGA 58.385 41.667 0.00 0.00 32.35 2.52
290 291 4.215185 GCTTCACCAGAAAAGGAGAGAAAG 59.785 45.833 0.00 0.00 32.35 2.62
291 292 4.137543 GCTTCACCAGAAAAGGAGAGAAA 58.862 43.478 0.00 0.00 32.35 2.52
292 293 3.136443 TGCTTCACCAGAAAAGGAGAGAA 59.864 43.478 0.00 0.00 32.35 2.87
293 294 2.705658 TGCTTCACCAGAAAAGGAGAGA 59.294 45.455 0.00 0.00 32.35 3.10
294 295 2.810852 GTGCTTCACCAGAAAAGGAGAG 59.189 50.000 0.00 0.00 32.35 3.20
295 296 2.851195 GTGCTTCACCAGAAAAGGAGA 58.149 47.619 0.00 0.00 32.35 3.71
307 308 1.172812 AAAAGAGGCCGGTGCTTCAC 61.173 55.000 1.90 0.00 45.49 3.18
308 309 1.150536 AAAAGAGGCCGGTGCTTCA 59.849 52.632 1.90 0.00 45.49 3.02
309 310 1.581447 CAAAAGAGGCCGGTGCTTC 59.419 57.895 1.90 0.00 43.53 3.86
310 311 2.564721 GCAAAAGAGGCCGGTGCTT 61.565 57.895 1.90 1.11 37.74 3.91
311 312 2.985847 GCAAAAGAGGCCGGTGCT 60.986 61.111 1.90 0.00 37.74 4.40
312 313 3.273080 CTGCAAAAGAGGCCGGTGC 62.273 63.158 1.90 3.23 35.75 5.01
313 314 2.629656 CCTGCAAAAGAGGCCGGTG 61.630 63.158 1.90 0.00 31.78 4.94
314 315 2.282462 CCTGCAAAAGAGGCCGGT 60.282 61.111 1.90 0.00 31.78 5.28
315 316 1.603455 TTCCTGCAAAAGAGGCCGG 60.603 57.895 0.00 0.00 37.03 6.13
316 317 1.581447 GTTCCTGCAAAAGAGGCCG 59.419 57.895 0.00 0.00 0.00 6.13
317 318 1.536073 GGGTTCCTGCAAAAGAGGCC 61.536 60.000 0.00 0.00 0.00 5.19
318 319 1.866853 CGGGTTCCTGCAAAAGAGGC 61.867 60.000 0.00 0.00 0.00 4.70
319 320 0.537371 ACGGGTTCCTGCAAAAGAGG 60.537 55.000 0.00 0.00 0.00 3.69
320 321 1.318576 AACGGGTTCCTGCAAAAGAG 58.681 50.000 0.00 0.00 0.00 2.85
321 322 1.407258 CAAACGGGTTCCTGCAAAAGA 59.593 47.619 0.00 0.00 0.00 2.52
322 323 1.407258 TCAAACGGGTTCCTGCAAAAG 59.593 47.619 0.00 0.00 0.00 2.27
323 324 1.135333 GTCAAACGGGTTCCTGCAAAA 59.865 47.619 0.00 0.00 0.00 2.44
324 325 0.741915 GTCAAACGGGTTCCTGCAAA 59.258 50.000 0.00 0.00 0.00 3.68
325 326 1.104577 GGTCAAACGGGTTCCTGCAA 61.105 55.000 0.00 0.00 0.00 4.08
326 327 1.527380 GGTCAAACGGGTTCCTGCA 60.527 57.895 0.00 0.00 0.00 4.41
327 328 2.265904 GGGTCAAACGGGTTCCTGC 61.266 63.158 0.00 0.00 0.00 4.85
328 329 0.889186 CAGGGTCAAACGGGTTCCTG 60.889 60.000 0.00 0.00 36.28 3.86
329 330 1.454539 CAGGGTCAAACGGGTTCCT 59.545 57.895 0.00 0.00 0.00 3.36
330 331 2.265904 GCAGGGTCAAACGGGTTCC 61.266 63.158 0.00 0.00 0.00 3.62
331 332 1.515521 CTGCAGGGTCAAACGGGTTC 61.516 60.000 5.57 0.00 0.00 3.62
332 333 1.528309 CTGCAGGGTCAAACGGGTT 60.528 57.895 5.57 0.00 0.00 4.11
333 334 2.113139 CTGCAGGGTCAAACGGGT 59.887 61.111 5.57 0.00 0.00 5.28
334 335 2.672996 CCTGCAGGGTCAAACGGG 60.673 66.667 26.14 0.00 0.00 5.28
335 336 3.365265 GCCTGCAGGGTCAAACGG 61.365 66.667 33.46 6.68 37.43 4.44
336 337 2.594303 TGCCTGCAGGGTCAAACG 60.594 61.111 33.46 6.43 37.43 3.60
337 338 2.924105 GCTGCCTGCAGGGTCAAAC 61.924 63.158 33.46 16.33 43.77 2.93
338 339 1.778017 TAGCTGCCTGCAGGGTCAAA 61.778 55.000 33.46 9.75 45.94 2.69
339 340 2.223443 TAGCTGCCTGCAGGGTCAA 61.223 57.895 33.46 6.99 45.94 3.18
340 341 2.607442 TAGCTGCCTGCAGGGTCA 60.607 61.111 33.46 22.13 45.94 4.02
341 342 2.124942 GTAGCTGCCTGCAGGGTC 60.125 66.667 33.46 18.59 45.94 4.46
342 343 3.721706 GGTAGCTGCCTGCAGGGT 61.722 66.667 33.46 15.98 45.94 4.34
343 344 2.490270 AAAGGTAGCTGCCTGCAGGG 62.490 60.000 33.46 19.16 45.94 4.45
344 345 0.610232 AAAAGGTAGCTGCCTGCAGG 60.610 55.000 29.34 29.34 45.94 4.85
345 346 1.251251 AAAAAGGTAGCTGCCTGCAG 58.749 50.000 25.25 14.70 45.94 4.41
346 347 2.159382 GTAAAAAGGTAGCTGCCTGCA 58.841 47.619 25.25 6.98 45.94 4.41
347 348 2.437413 AGTAAAAAGGTAGCTGCCTGC 58.563 47.619 25.25 11.97 39.17 4.85
348 349 5.453567 AAAAGTAAAAAGGTAGCTGCCTG 57.546 39.130 25.25 0.00 39.17 4.85
368 369 3.367292 GCGATGCAATCTTGGAGGAAAAA 60.367 43.478 0.00 0.00 42.58 1.94
369 370 2.164219 GCGATGCAATCTTGGAGGAAAA 59.836 45.455 0.00 0.00 42.58 2.29
370 371 1.745087 GCGATGCAATCTTGGAGGAAA 59.255 47.619 0.00 0.00 42.58 3.13
371 372 1.339920 TGCGATGCAATCTTGGAGGAA 60.340 47.619 0.00 0.00 42.58 3.36
372 373 0.252761 TGCGATGCAATCTTGGAGGA 59.747 50.000 0.00 0.00 42.58 3.71
373 374 1.266175 GATGCGATGCAATCTTGGAGG 59.734 52.381 0.00 0.00 43.62 4.30
374 375 1.070108 CGATGCGATGCAATCTTGGAG 60.070 52.381 0.00 0.00 43.62 3.86
375 376 0.939419 CGATGCGATGCAATCTTGGA 59.061 50.000 0.00 0.00 43.62 3.53
376 377 0.040692 CCGATGCGATGCAATCTTGG 60.041 55.000 0.00 0.00 43.62 3.61
377 378 0.939419 TCCGATGCGATGCAATCTTG 59.061 50.000 0.00 0.00 43.62 3.02
378 379 0.940126 GTCCGATGCGATGCAATCTT 59.060 50.000 0.00 0.00 43.62 2.40
379 380 1.217585 CGTCCGATGCGATGCAATCT 61.218 55.000 0.00 0.00 43.62 2.40
380 381 1.202568 CGTCCGATGCGATGCAATC 59.797 57.895 0.00 0.00 43.62 2.67
381 382 1.521457 ACGTCCGATGCGATGCAAT 60.521 52.632 0.00 0.00 43.62 3.56
382 383 2.125713 ACGTCCGATGCGATGCAA 60.126 55.556 0.00 0.00 43.62 4.08
383 384 2.272918 TACACGTCCGATGCGATGCA 62.273 55.000 0.00 0.00 44.86 3.96
384 385 1.540607 CTACACGTCCGATGCGATGC 61.541 60.000 0.00 0.00 0.00 3.91
385 386 0.934901 CCTACACGTCCGATGCGATG 60.935 60.000 0.00 0.00 0.00 3.84
386 387 1.359117 CCTACACGTCCGATGCGAT 59.641 57.895 0.00 0.00 0.00 4.58
387 388 2.767445 CCCTACACGTCCGATGCGA 61.767 63.158 0.00 0.00 0.00 5.10
388 389 2.278596 CCCTACACGTCCGATGCG 60.279 66.667 0.00 0.00 0.00 4.73
389 390 2.585247 GCCCTACACGTCCGATGC 60.585 66.667 0.00 0.00 0.00 3.91
390 391 1.226974 CAGCCCTACACGTCCGATG 60.227 63.158 0.00 0.00 0.00 3.84
391 392 2.423898 CCAGCCCTACACGTCCGAT 61.424 63.158 0.00 0.00 0.00 4.18
392 393 3.066190 CCAGCCCTACACGTCCGA 61.066 66.667 0.00 0.00 0.00 4.55
393 394 4.143333 CCCAGCCCTACACGTCCG 62.143 72.222 0.00 0.00 0.00 4.79
394 395 3.782443 CCCCAGCCCTACACGTCC 61.782 72.222 0.00 0.00 0.00 4.79
395 396 4.468689 GCCCCAGCCCTACACGTC 62.469 72.222 0.00 0.00 0.00 4.34
397 398 4.473520 CTGCCCCAGCCCTACACG 62.474 72.222 0.00 0.00 38.69 4.49
406 407 2.619849 CCATATTGGATAGCTGCCCCAG 60.620 54.545 0.00 0.00 40.96 4.45
407 408 1.355381 CCATATTGGATAGCTGCCCCA 59.645 52.381 0.00 0.00 40.96 4.96
408 409 1.635487 TCCATATTGGATAGCTGCCCC 59.365 52.381 0.00 0.00 42.67 5.80
418 419 0.465460 GGCCAACGCTCCATATTGGA 60.465 55.000 0.00 0.00 45.98 3.53
419 420 0.751277 TGGCCAACGCTCCATATTGG 60.751 55.000 0.61 0.00 44.84 3.16
420 421 1.001048 CATGGCCAACGCTCCATATTG 60.001 52.381 10.96 0.00 40.88 1.90
421 422 1.321474 CATGGCCAACGCTCCATATT 58.679 50.000 10.96 0.00 40.88 1.28
422 423 0.183492 ACATGGCCAACGCTCCATAT 59.817 50.000 10.96 0.00 40.88 1.78
423 424 0.463654 GACATGGCCAACGCTCCATA 60.464 55.000 10.96 0.00 40.88 2.74
424 425 1.750399 GACATGGCCAACGCTCCAT 60.750 57.895 10.96 0.00 43.45 3.41
425 426 2.359850 GACATGGCCAACGCTCCA 60.360 61.111 10.96 0.00 36.70 3.86
426 427 3.134127 GGACATGGCCAACGCTCC 61.134 66.667 14.59 7.61 34.44 4.70
427 428 2.045926 AGGACATGGCCAACGCTC 60.046 61.111 22.78 1.18 34.44 5.03
428 429 2.045926 GAGGACATGGCCAACGCT 60.046 61.111 22.78 0.00 34.44 5.07
429 430 2.359850 TGAGGACATGGCCAACGC 60.360 61.111 22.78 6.59 0.00 4.84
430 431 0.742281 CTCTGAGGACATGGCCAACG 60.742 60.000 22.78 6.78 0.00 4.10
431 432 0.615331 TCTCTGAGGACATGGCCAAC 59.385 55.000 22.78 14.20 0.00 3.77
432 433 1.280133 CTTCTCTGAGGACATGGCCAA 59.720 52.381 22.78 6.59 0.00 4.52
433 434 0.907486 CTTCTCTGAGGACATGGCCA 59.093 55.000 22.78 8.56 0.00 5.36
434 435 0.908198 ACTTCTCTGAGGACATGGCC 59.092 55.000 10.65 10.65 0.00 5.36
435 436 3.895232 TTACTTCTCTGAGGACATGGC 57.105 47.619 4.59 0.00 0.00 4.40
436 437 5.604758 TGATTACTTCTCTGAGGACATGG 57.395 43.478 4.59 0.00 0.00 3.66
437 438 6.047870 CCTTGATTACTTCTCTGAGGACATG 58.952 44.000 4.59 0.00 0.00 3.21
438 439 5.130145 CCCTTGATTACTTCTCTGAGGACAT 59.870 44.000 4.59 0.00 0.00 3.06
439 440 4.467795 CCCTTGATTACTTCTCTGAGGACA 59.532 45.833 4.59 0.00 0.00 4.02
440 441 4.468153 ACCCTTGATTACTTCTCTGAGGAC 59.532 45.833 4.59 0.00 0.00 3.85
441 442 4.467795 CACCCTTGATTACTTCTCTGAGGA 59.532 45.833 4.59 0.00 0.00 3.71
442 443 4.764172 CACCCTTGATTACTTCTCTGAGG 58.236 47.826 4.59 0.00 0.00 3.86
443 444 4.081198 AGCACCCTTGATTACTTCTCTGAG 60.081 45.833 0.00 0.00 0.00 3.35
444 445 3.840666 AGCACCCTTGATTACTTCTCTGA 59.159 43.478 0.00 0.00 0.00 3.27
445 446 4.187694 GAGCACCCTTGATTACTTCTCTG 58.812 47.826 0.00 0.00 0.00 3.35
446 447 3.198853 GGAGCACCCTTGATTACTTCTCT 59.801 47.826 0.00 0.00 0.00 3.10
459 460 4.101448 GTCGCCATGGAGCACCCT 62.101 66.667 18.40 0.00 35.38 4.34
468 469 1.442526 GGGCTTCATCTGTCGCCATG 61.443 60.000 12.19 0.00 44.23 3.66
474 475 5.241662 GGTATCAATAGGGCTTCATCTGTC 58.758 45.833 0.00 0.00 0.00 3.51
476 477 4.042062 TGGGTATCAATAGGGCTTCATCTG 59.958 45.833 0.00 0.00 0.00 2.90
486 487 5.132502 TGTCATTGCTTGGGTATCAATAGG 58.867 41.667 0.00 0.00 34.45 2.57
497 498 5.007921 TCGATGTAATGATGTCATTGCTTGG 59.992 40.000 19.63 15.59 45.28 3.61
520 521 2.038690 CCCATGCATGCTGATGGTC 58.961 57.895 26.78 0.00 37.96 4.02
579 580 2.413796 TCGACACAACGGCAACATAATC 59.586 45.455 0.00 0.00 0.00 1.75
580 581 2.415168 CTCGACACAACGGCAACATAAT 59.585 45.455 0.00 0.00 0.00 1.28
581 582 1.795872 CTCGACACAACGGCAACATAA 59.204 47.619 0.00 0.00 0.00 1.90
582 583 1.269883 ACTCGACACAACGGCAACATA 60.270 47.619 0.00 0.00 0.00 2.29
583 584 0.531974 ACTCGACACAACGGCAACAT 60.532 50.000 0.00 0.00 0.00 2.71
584 585 1.149361 GACTCGACACAACGGCAACA 61.149 55.000 0.00 0.00 0.00 3.33
585 586 1.563173 GACTCGACACAACGGCAAC 59.437 57.895 0.00 0.00 0.00 4.17
586 587 1.947146 CGACTCGACACAACGGCAA 60.947 57.895 0.00 0.00 0.00 4.52
587 588 2.354188 CGACTCGACACAACGGCA 60.354 61.111 0.00 0.00 0.00 5.69
588 589 3.103911 CCGACTCGACACAACGGC 61.104 66.667 0.00 0.00 37.32 5.68
590 591 1.594269 CGAACCGACTCGACACAACG 61.594 60.000 0.00 0.00 41.44 4.10
591 592 0.593263 ACGAACCGACTCGACACAAC 60.593 55.000 12.23 0.00 41.44 3.32
601 602 0.179134 CTCATGAGGGACGAACCGAC 60.179 60.000 15.38 0.00 40.11 4.79
602 603 0.323087 TCTCATGAGGGACGAACCGA 60.323 55.000 22.42 0.00 40.11 4.69
603 604 0.101399 CTCTCATGAGGGACGAACCG 59.899 60.000 18.40 0.00 40.11 4.44
604 605 1.475403 TCTCTCATGAGGGACGAACC 58.525 55.000 21.76 0.00 40.58 3.62
622 623 2.945668 GTCCCACCTGTCAATTGCTATC 59.054 50.000 0.00 0.00 0.00 2.08
738 739 2.436646 GATGCGGTCAGGTGTGGG 60.437 66.667 0.00 0.00 0.00 4.61
789 792 3.921119 TTCTACTTGTTGCATTGCAGG 57.079 42.857 11.76 6.46 40.61 4.85
810 3434 6.800892 GTGGCCGAAATTTGTACGTAATTTTA 59.199 34.615 15.49 3.68 35.83 1.52
819 3443 2.095415 GTCTGGTGGCCGAAATTTGTAC 60.095 50.000 0.00 0.00 0.00 2.90
820 3444 2.156098 GTCTGGTGGCCGAAATTTGTA 58.844 47.619 0.00 0.00 0.00 2.41
821 3445 0.958822 GTCTGGTGGCCGAAATTTGT 59.041 50.000 0.00 0.00 0.00 2.83
822 3446 0.243636 GGTCTGGTGGCCGAAATTTG 59.756 55.000 0.00 0.00 0.00 2.32
859 3483 2.187946 GGCCGATGGTCTGTCTGG 59.812 66.667 0.00 0.00 0.00 3.86
877 3501 4.594123 TGGCGAACCGATGATTTATAGA 57.406 40.909 0.00 0.00 39.70 1.98
900 3524 2.430465 CACAAGTGGAGTTGGAGATGG 58.570 52.381 0.00 0.00 0.00 3.51
968 3592 0.684479 ATGCCTGCTCTGGAGTCGTA 60.684 55.000 0.00 0.00 0.00 3.43
1242 3869 1.266160 TGGATTTTACGGGCGGGAGA 61.266 55.000 0.00 0.00 0.00 3.71
1262 3889 1.834263 AGGTCAATGTCTCTAGGTGGC 59.166 52.381 0.00 0.00 0.00 5.01
1481 4114 0.035739 GTCCTGGAAGTTGGCGGTAA 59.964 55.000 0.00 0.00 0.00 2.85
1482 4115 1.122632 TGTCCTGGAAGTTGGCGGTA 61.123 55.000 0.00 0.00 0.00 4.02
1977 4623 4.501285 TCGAGGTCCGGCTCCGAT 62.501 66.667 10.28 0.00 42.83 4.18
2037 4683 1.194781 ATGACTTCACGACCAGGCCT 61.195 55.000 0.00 0.00 0.00 5.19
2040 4686 0.391661 CCCATGACTTCACGACCAGG 60.392 60.000 0.00 0.00 0.00 4.45
2086 4734 2.594592 GAACAAGGCCACCGCTGT 60.595 61.111 5.01 0.00 34.44 4.40
2230 4878 1.140161 CGTACCCTTCGATCGCCAA 59.860 57.895 11.09 0.00 0.00 4.52
2238 4886 0.172803 CCTCCTTGTCGTACCCTTCG 59.827 60.000 0.00 0.00 0.00 3.79
2275 4929 0.963962 CACTTCACCTTTGCTGCCAT 59.036 50.000 0.00 0.00 0.00 4.40
2352 5045 1.227350 CATCGCCTCATTCGCCTGA 60.227 57.895 0.00 0.00 0.00 3.86
2442 5135 2.697751 CGGATCCCTTCTTGACTGATCT 59.302 50.000 6.06 0.00 33.87 2.75
2477 5170 4.579384 CCCCCACACAACCACGCT 62.579 66.667 0.00 0.00 0.00 5.07
2480 5173 0.696501 ATACTCCCCCACACAACCAC 59.303 55.000 0.00 0.00 0.00 4.16
2481 5174 1.451449 AATACTCCCCCACACAACCA 58.549 50.000 0.00 0.00 0.00 3.67
2482 5175 3.009805 ACTTAATACTCCCCCACACAACC 59.990 47.826 0.00 0.00 0.00 3.77
2491 5195 3.602483 TCGCAACAACTTAATACTCCCC 58.398 45.455 0.00 0.00 0.00 4.81
2558 5585 9.726438 TGAAACTGAAATTGGTAAAAAGGAAAA 57.274 25.926 0.00 0.00 0.00 2.29
2559 5586 9.898152 ATGAAACTGAAATTGGTAAAAAGGAAA 57.102 25.926 0.00 0.00 0.00 3.13
2560 5587 9.898152 AATGAAACTGAAATTGGTAAAAAGGAA 57.102 25.926 0.00 0.00 0.00 3.36
2591 5618 9.331282 GCTTCCAAATGTAAGATACAAGTAGAT 57.669 33.333 0.00 0.00 42.76 1.98
2592 5619 8.318412 TGCTTCCAAATGTAAGATACAAGTAGA 58.682 33.333 0.00 0.00 42.76 2.59
2709 5736 0.984230 TCTTCACGCTCCCTCCAATT 59.016 50.000 0.00 0.00 0.00 2.32
2759 5786 7.921786 AATCAGAACACATAAAAAGGATCGA 57.078 32.000 0.00 0.00 0.00 3.59
2843 5872 1.968493 TGAGAGGGAGTGTTGGTGTAC 59.032 52.381 0.00 0.00 0.00 2.90
2869 5899 3.412386 GGTCTGTACAACATCTTTGCCT 58.588 45.455 0.00 0.00 0.00 4.75
2873 5904 5.505181 AGATGGGTCTGTACAACATCTTT 57.495 39.130 18.63 6.10 43.54 2.52
2881 5912 3.169908 TGTAGCAAGATGGGTCTGTACA 58.830 45.455 0.00 0.00 34.13 2.90
2926 5957 5.932303 GCAGATGTACTTACAAAAGGACTCA 59.068 40.000 2.42 0.00 45.54 3.41
3062 6093 6.765403 AGCTGCCATTGATATTGCAAATAAT 58.235 32.000 1.71 0.00 32.63 1.28
3174 6205 4.160439 CAGAGTTTAGGTCTATGGCTCACA 59.840 45.833 0.00 0.00 0.00 3.58
3401 6434 7.323420 TCATATGGAAGCTGTAAATAGGATCG 58.677 38.462 2.13 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.