Multiple sequence alignment - TraesCS3B01G289900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G289900 chr3B 100.000 7375 0 0 1 7375 465345498 465338124 0.000000e+00 13620.0
1 TraesCS3B01G289900 chr3B 95.019 783 37 2 958 1739 465375281 465374500 0.000000e+00 1229.0
2 TraesCS3B01G289900 chr3B 85.526 1064 87 26 3988 5045 465331293 465330291 0.000000e+00 1050.0
3 TraesCS3B01G289900 chr3B 85.244 1064 90 28 3988 5045 465277361 465276359 0.000000e+00 1033.0
4 TraesCS3B01G289900 chr3B 89.274 317 34 0 7059 7375 465218181 465217865 1.490000e-106 398.0
5 TraesCS3B01G289900 chr3B 88.328 317 37 0 7059 7375 465284590 465284274 1.500000e-101 381.0
6 TraesCS3B01G289900 chr3B 88.889 225 20 3 3706 3927 465277583 465277361 9.430000e-69 272.0
7 TraesCS3B01G289900 chr3B 88.889 225 20 3 3706 3927 465331515 465331293 9.430000e-69 272.0
8 TraesCS3B01G289900 chr3B 93.168 161 11 0 723 883 243784205 243784045 3.440000e-58 237.0
9 TraesCS3B01G289900 chr3B 92.638 163 12 0 721 883 263380163 263380325 1.240000e-57 235.0
10 TraesCS3B01G289900 chr3B 90.286 175 15 2 718 892 2172720 2172548 2.070000e-55 228.0
11 TraesCS3B01G289900 chr3B 87.421 159 11 4 6134 6288 465276359 465276206 2.740000e-39 174.0
12 TraesCS3B01G289900 chr3B 86.792 159 12 4 6134 6288 465330291 465330138 1.270000e-37 169.0
13 TraesCS3B01G289900 chr3B 85.366 123 7 7 4025 4138 465341098 465340978 4.680000e-22 117.0
14 TraesCS3B01G289900 chr3B 85.366 123 7 7 4401 4521 465341474 465341361 4.680000e-22 117.0
15 TraesCS3B01G289900 chr3B 80.000 150 13 13 4405 4550 465277322 465277186 2.190000e-15 95.3
16 TraesCS3B01G289900 chr3A 95.818 3898 123 17 1751 5632 478692261 478688388 0.000000e+00 6259.0
17 TraesCS3B01G289900 chr3A 94.988 858 33 4 5593 6447 478688454 478687604 0.000000e+00 1338.0
18 TraesCS3B01G289900 chr3A 94.731 835 29 7 929 1759 478693363 478692540 0.000000e+00 1284.0
19 TraesCS3B01G289900 chr3A 88.670 1068 80 18 3988 5045 478679448 478678412 0.000000e+00 1264.0
20 TraesCS3B01G289900 chr3A 90.964 664 30 15 6713 7375 478682594 478681960 0.000000e+00 867.0
21 TraesCS3B01G289900 chr3A 87.072 263 17 7 7000 7262 478675985 478675740 1.570000e-71 281.0
22 TraesCS3B01G289900 chr3A 88.496 226 19 4 3708 3927 478679672 478679448 4.390000e-67 267.0
23 TraesCS3B01G289900 chr3A 87.671 146 7 2 6134 6276 478678412 478678275 7.660000e-35 159.0
24 TraesCS3B01G289900 chr3A 92.500 80 1 3 4444 4521 478689944 478689868 7.820000e-20 110.0
25 TraesCS3B01G289900 chr3A 81.333 150 11 14 4405 4550 478679409 478679273 1.010000e-18 106.0
26 TraesCS3B01G289900 chr3A 91.358 81 2 3 4061 4138 478689559 478689481 1.010000e-18 106.0
27 TraesCS3B01G289900 chr3A 82.927 123 9 8 4025 4138 478679042 478678923 4.710000e-17 100.0
28 TraesCS3B01G289900 chr3D 94.760 3588 135 21 723 4267 359324600 359321023 0.000000e+00 5535.0
29 TraesCS3B01G289900 chr3D 96.741 1381 41 4 4254 5632 359320931 359319553 0.000000e+00 2298.0
30 TraesCS3B01G289900 chr3D 94.737 950 37 9 5593 6537 359319619 359318678 0.000000e+00 1465.0
31 TraesCS3B01G289900 chr3D 92.013 626 20 16 6756 7375 359318451 359317850 0.000000e+00 852.0
32 TraesCS3B01G289900 chr3D 84.553 123 9 7 4401 4521 359321266 359321152 6.050000e-21 113.0
33 TraesCS3B01G289900 chr3D 82.759 116 9 7 4031 4138 359320776 359320664 7.880000e-15 93.5
34 TraesCS3B01G289900 chr3D 100.000 47 0 0 6726 6772 359318509 359318463 3.670000e-13 87.9
35 TraesCS3B01G289900 chr6B 97.181 603 17 0 1 603 563975630 563975028 0.000000e+00 1020.0
36 TraesCS3B01G289900 chr1B 97.181 603 17 0 1 603 643025193 643025795 0.000000e+00 1020.0
37 TraesCS3B01G289900 chr1B 92.308 169 12 1 716 883 72877049 72877217 9.560000e-59 239.0
38 TraesCS3B01G289900 chr1B 91.716 169 13 1 716 883 72706727 72706895 4.450000e-57 233.0
39 TraesCS3B01G289900 chr1B 91.716 169 13 1 716 883 72766780 72766948 4.450000e-57 233.0
40 TraesCS3B01G289900 chr1B 80.469 128 18 6 7110 7233 587974843 587974967 2.830000e-14 91.6
41 TraesCS3B01G289900 chr1B 100.000 37 0 0 603 639 191955098 191955062 1.330000e-07 69.4
42 TraesCS3B01G289900 chr4B 96.352 603 22 0 1 603 654982009 654981407 0.000000e+00 992.0
43 TraesCS3B01G289900 chr4B 96.352 603 22 0 1 603 655017739 655017137 0.000000e+00 992.0
44 TraesCS3B01G289900 chr4B 96.186 603 23 0 1 603 655053145 655052543 0.000000e+00 987.0
45 TraesCS3B01G289900 chr4B 96.203 79 3 0 4057 4135 76703938 76703860 6.000000e-26 130.0
46 TraesCS3B01G289900 chr4B 100.000 66 0 0 4070 4135 516744158 516744223 1.000000e-23 122.0
47 TraesCS3B01G289900 chr4B 91.304 69 1 3 4452 4518 516744158 516744223 1.020000e-13 89.8
48 TraesCS3B01G289900 chr7B 95.854 603 25 0 1 603 739379537 739380139 0.000000e+00 976.0
49 TraesCS3B01G289900 chr7B 95.695 604 25 1 1 603 10565918 10566521 0.000000e+00 970.0
50 TraesCS3B01G289900 chr7B 93.827 162 10 0 723 884 97375014 97375175 2.060000e-60 244.0
51 TraesCS3B01G289900 chr7B 95.402 87 2 1 4051 4135 234405322 234405408 3.590000e-28 137.0
52 TraesCS3B01G289900 chr7B 95.238 63 1 1 4444 4506 234405335 234405395 1.690000e-16 99.0
53 TraesCS3B01G289900 chr2B 95.688 603 23 2 1 603 776456792 776456193 0.000000e+00 966.0
54 TraesCS3B01G289900 chr2B 90.341 176 15 2 708 883 650282201 650282374 5.760000e-56 230.0
55 TraesCS3B01G289900 chr4A 95.522 603 27 0 1 603 703330436 703331038 0.000000e+00 965.0
56 TraesCS3B01G289900 chr4A 96.591 88 2 1 4082 4169 74937077 74936991 2.140000e-30 145.0
57 TraesCS3B01G289900 chr4D 94.059 101 4 2 4071 4169 483304228 483304328 1.280000e-32 152.0
58 TraesCS3B01G289900 chr4D 86.111 72 3 5 4453 4520 483304228 483304296 3.690000e-08 71.3
59 TraesCS3B01G289900 chr6D 97.468 79 2 0 4057 4135 168680761 168680683 1.290000e-27 135.0
60 TraesCS3B01G289900 chr6D 91.954 87 7 0 638 724 52291083 52291169 1.000000e-23 122.0
61 TraesCS3B01G289900 chr6D 89.610 77 3 3 4444 4518 168680756 168680683 7.880000e-15 93.5
62 TraesCS3B01G289900 chr5D 100.000 66 0 0 4070 4135 179714372 179714437 1.000000e-23 122.0
63 TraesCS3B01G289900 chr5D 91.304 69 1 3 4452 4518 179714372 179714437 1.020000e-13 89.8
64 TraesCS3B01G289900 chr7A 93.671 79 5 0 4057 4135 359644534 359644612 1.300000e-22 119.0
65 TraesCS3B01G289900 chr5B 90.909 77 7 0 638 714 73989868 73989944 3.640000e-18 104.0
66 TraesCS3B01G289900 chr1D 100.000 37 0 0 603 639 142657152 142657116 1.330000e-07 69.4
67 TraesCS3B01G289900 chr1A 100.000 37 0 0 603 639 147357152 147357188 1.330000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G289900 chr3B 465338124 465345498 7374 True 13620.000000 13620 100.000000 1 7375 1 chr3B.!!$R5 7374
1 TraesCS3B01G289900 chr3B 465374500 465375281 781 True 1229.000000 1229 95.019000 958 1739 1 chr3B.!!$R6 781
2 TraesCS3B01G289900 chr3B 465330138 465331515 1377 True 497.000000 1050 87.069000 3706 6288 3 chr3B.!!$R8 2582
3 TraesCS3B01G289900 chr3B 465276206 465277583 1377 True 393.575000 1033 85.388500 3706 6288 4 chr3B.!!$R7 2582
4 TraesCS3B01G289900 chr3A 478687604 478693363 5759 True 1819.400000 6259 93.879000 929 6447 5 chr3A.!!$R2 5518
5 TraesCS3B01G289900 chr3A 478675740 478682594 6854 True 434.857143 1264 86.733286 3708 7375 7 chr3A.!!$R1 3667
6 TraesCS3B01G289900 chr3D 359317850 359324600 6750 True 1492.057143 5535 92.223286 723 7375 7 chr3D.!!$R1 6652
7 TraesCS3B01G289900 chr6B 563975028 563975630 602 True 1020.000000 1020 97.181000 1 603 1 chr6B.!!$R1 602
8 TraesCS3B01G289900 chr1B 643025193 643025795 602 False 1020.000000 1020 97.181000 1 603 1 chr1B.!!$F5 602
9 TraesCS3B01G289900 chr4B 654981407 654982009 602 True 992.000000 992 96.352000 1 603 1 chr4B.!!$R2 602
10 TraesCS3B01G289900 chr4B 655017137 655017739 602 True 992.000000 992 96.352000 1 603 1 chr4B.!!$R3 602
11 TraesCS3B01G289900 chr4B 655052543 655053145 602 True 987.000000 987 96.186000 1 603 1 chr4B.!!$R4 602
12 TraesCS3B01G289900 chr7B 739379537 739380139 602 False 976.000000 976 95.854000 1 603 1 chr7B.!!$F3 602
13 TraesCS3B01G289900 chr7B 10565918 10566521 603 False 970.000000 970 95.695000 1 603 1 chr7B.!!$F1 602
14 TraesCS3B01G289900 chr2B 776456193 776456792 599 True 966.000000 966 95.688000 1 603 1 chr2B.!!$R1 602
15 TraesCS3B01G289900 chr4A 703330436 703331038 602 False 965.000000 965 95.522000 1 603 1 chr4A.!!$F1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
617 619 0.173708 GAGAGTACAGGAGGCGGTTG 59.826 60.0 0.00 0.00 0.00 3.77 F
1505 1516 0.037326 CTACTCTCTGGCGCCAACAA 60.037 55.0 32.09 17.64 0.00 2.83 F
1712 1727 0.106015 AGCTGAAGTTTGGGTGGCTT 60.106 50.0 0.00 0.00 0.00 4.35 F
3017 3327 0.466189 CATTGCTTGGGGCCGTCTAT 60.466 55.0 0.00 0.00 40.92 1.98 F
4947 5407 0.034337 GTGGCCACGACAAGGAAGTA 59.966 55.0 22.49 0.00 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2316 2621 1.082690 GAGCAGACAGTAGGCTTTGC 58.917 55.000 0.00 0.0 38.15 3.68 R
2716 3026 1.685148 GGAGGGAGGCTGCAAATTAG 58.315 55.000 8.68 0.0 0.00 1.73 R
3100 3410 1.753073 GGAATGATGAGCCTTTGTGGG 59.247 52.381 0.00 0.0 36.00 4.61 R
4960 5420 0.035739 TTGTTAGCACTTCCCCGTCC 59.964 55.000 0.00 0.0 0.00 4.79 R
6482 6951 1.550976 CAAGATATACTCCCTCCGGCC 59.449 57.143 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 158 1.946768 CACGAACCCAACACATGTTCT 59.053 47.619 0.00 0.00 36.97 3.01
367 368 0.759436 ATAGGACCGATGGCCTCGTT 60.759 55.000 18.94 8.67 46.18 3.85
397 398 9.853177 AAAGGATCCGAAGAATATTTATTCAGT 57.147 29.630 5.98 1.01 43.43 3.41
518 520 2.337532 CCACCGACGACCGAAGTT 59.662 61.111 0.00 0.00 41.76 2.66
604 606 2.514592 CCGCCGGGTACGAGAGTA 60.515 66.667 2.18 0.00 46.88 2.59
614 616 0.463295 TACGAGAGTACAGGAGGCGG 60.463 60.000 0.00 0.00 46.88 6.13
616 618 1.313812 CGAGAGTACAGGAGGCGGTT 61.314 60.000 0.00 0.00 0.00 4.44
617 619 0.173708 GAGAGTACAGGAGGCGGTTG 59.826 60.000 0.00 0.00 0.00 3.77
618 620 1.218316 GAGTACAGGAGGCGGTTGG 59.782 63.158 0.00 0.00 0.00 3.77
620 622 1.218316 GTACAGGAGGCGGTTGGAG 59.782 63.158 0.00 0.00 0.00 3.86
621 623 1.987855 TACAGGAGGCGGTTGGAGG 60.988 63.158 0.00 0.00 0.00 4.30
629 631 2.978010 CGGTTGGAGGCGCAAGTT 60.978 61.111 10.83 0.00 41.68 2.66
630 632 2.644992 GGTTGGAGGCGCAAGTTG 59.355 61.111 10.83 0.00 41.68 3.16
632 634 3.294493 TTGGAGGCGCAAGTTGGC 61.294 61.111 10.83 6.40 41.68 4.52
633 635 4.577677 TGGAGGCGCAAGTTGGCA 62.578 61.111 10.83 0.00 41.68 4.92
635 637 3.286751 GAGGCGCAAGTTGGCACA 61.287 61.111 10.83 0.00 41.68 4.57
636 638 2.832661 AGGCGCAAGTTGGCACAA 60.833 55.556 10.83 0.00 41.27 3.33
637 639 2.105930 GGCGCAAGTTGGCACAAA 59.894 55.556 10.83 0.00 41.27 2.83
638 640 2.237066 GGCGCAAGTTGGCACAAAC 61.237 57.895 10.83 0.00 41.27 2.93
639 641 2.237066 GCGCAAGTTGGCACAAACC 61.237 57.895 0.30 0.00 41.27 3.27
646 648 2.203422 TGGCACAAACCCCCTTCG 60.203 61.111 0.00 0.00 31.92 3.79
647 649 2.203437 GGCACAAACCCCCTTCGT 60.203 61.111 0.00 0.00 0.00 3.85
650 652 1.946267 CACAAACCCCCTTCGTTCG 59.054 57.895 0.00 0.00 0.00 3.95
651 653 1.228033 ACAAACCCCCTTCGTTCGG 60.228 57.895 0.00 0.00 0.00 4.30
652 654 1.071814 CAAACCCCCTTCGTTCGGA 59.928 57.895 0.00 0.00 0.00 4.55
653 655 0.535553 CAAACCCCCTTCGTTCGGAA 60.536 55.000 0.00 0.00 0.00 4.30
654 656 0.402887 AAACCCCCTTCGTTCGGAAT 59.597 50.000 0.00 0.00 33.26 3.01
655 657 0.402887 AACCCCCTTCGTTCGGAATT 59.597 50.000 0.00 0.00 33.26 2.17
658 660 1.208776 CCCCCTTCGTTCGGAATTACT 59.791 52.381 0.00 0.00 33.26 2.24
660 662 2.190981 CCCTTCGTTCGGAATTACTCG 58.809 52.381 0.00 0.00 33.26 4.18
662 664 1.587034 CTTCGTTCGGAATTACTCGCC 59.413 52.381 0.00 0.00 33.26 5.54
671 673 4.197107 GGAATTACTCGCCGAAGAAATG 57.803 45.455 0.00 0.00 0.00 2.32
672 674 3.869246 GGAATTACTCGCCGAAGAAATGA 59.131 43.478 0.00 0.00 0.00 2.57
673 675 4.331717 GGAATTACTCGCCGAAGAAATGAA 59.668 41.667 0.00 0.00 0.00 2.57
674 676 5.007724 GGAATTACTCGCCGAAGAAATGAAT 59.992 40.000 0.00 0.00 0.00 2.57
675 677 4.857871 TTACTCGCCGAAGAAATGAATG 57.142 40.909 0.00 0.00 0.00 2.67
676 678 2.699954 ACTCGCCGAAGAAATGAATGT 58.300 42.857 0.00 0.00 0.00 2.71
677 679 3.857052 ACTCGCCGAAGAAATGAATGTA 58.143 40.909 0.00 0.00 0.00 2.29
678 680 4.442706 ACTCGCCGAAGAAATGAATGTAT 58.557 39.130 0.00 0.00 0.00 2.29
679 681 4.876107 ACTCGCCGAAGAAATGAATGTATT 59.124 37.500 0.00 0.00 0.00 1.89
680 682 5.354234 ACTCGCCGAAGAAATGAATGTATTT 59.646 36.000 0.00 0.00 33.19 1.40
717 719 8.373048 AGTTGTAGATACGTTCATTTTTGTGA 57.627 30.769 0.00 0.00 0.00 3.58
719 721 7.716768 TGTAGATACGTTCATTTTTGTGACA 57.283 32.000 0.00 0.00 0.00 3.58
720 722 8.144155 TGTAGATACGTTCATTTTTGTGACAA 57.856 30.769 0.00 0.00 0.00 3.18
721 723 8.279800 TGTAGATACGTTCATTTTTGTGACAAG 58.720 33.333 0.00 0.00 0.00 3.16
744 746 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
745 747 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
752 754 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
768 770 7.721286 AAGTCTTTGTAGAGATTTCACTGTG 57.279 36.000 0.17 0.17 0.00 3.66
769 771 7.055667 AGTCTTTGTAGAGATTTCACTGTGA 57.944 36.000 6.36 6.36 0.00 3.58
770 772 7.500992 AGTCTTTGTAGAGATTTCACTGTGAA 58.499 34.615 18.69 18.69 34.03 3.18
771 773 7.439655 AGTCTTTGTAGAGATTTCACTGTGAAC 59.560 37.037 21.95 12.17 35.89 3.18
779 782 5.620206 AGATTTCACTGTGAACCACATACA 58.380 37.500 21.95 6.26 43.71 2.29
794 797 9.307121 GAACCACATACAGATGTATATAGATGC 57.693 37.037 5.21 0.00 44.82 3.91
836 840 6.730960 TTCATTTTGTTCCGTATGTAGTCC 57.269 37.500 0.00 0.00 0.00 3.85
837 841 5.795972 TCATTTTGTTCCGTATGTAGTCCA 58.204 37.500 0.00 0.00 0.00 4.02
838 842 6.411376 TCATTTTGTTCCGTATGTAGTCCAT 58.589 36.000 0.00 0.00 37.58 3.41
839 843 7.557724 TCATTTTGTTCCGTATGTAGTCCATA 58.442 34.615 0.00 0.00 34.86 2.74
840 844 8.041919 TCATTTTGTTCCGTATGTAGTCCATAA 58.958 33.333 0.00 0.00 37.77 1.90
842 846 7.780008 TTTGTTCCGTATGTAGTCCATAATG 57.220 36.000 0.00 0.00 37.77 1.90
844 848 7.114866 TGTTCCGTATGTAGTCCATAATGAA 57.885 36.000 0.00 0.00 37.77 2.57
846 850 8.208224 TGTTCCGTATGTAGTCCATAATGAAAT 58.792 33.333 0.00 0.00 37.77 2.17
876 880 7.987649 ACAAAGACTTACATTTACAAACGGAA 58.012 30.769 0.00 0.00 0.00 4.30
878 882 8.339714 CAAAGACTTACATTTACAAACGGAAGA 58.660 33.333 0.04 0.00 0.00 2.87
893 897 7.487189 ACAAACGGAAGAAGTACATTAGTATCG 59.513 37.037 0.00 0.00 31.84 2.92
897 901 8.502387 ACGGAAGAAGTACATTAGTATCGTATC 58.498 37.037 0.00 0.00 31.84 2.24
898 902 7.961827 CGGAAGAAGTACATTAGTATCGTATCC 59.038 40.741 0.00 0.00 31.84 2.59
903 907 5.713861 AGTACATTAGTATCGTATCCCCACC 59.286 44.000 0.00 0.00 31.84 4.61
904 908 3.508793 ACATTAGTATCGTATCCCCACCG 59.491 47.826 0.00 0.00 0.00 4.94
910 914 2.188829 CGTATCCCCACCGCGACTA 61.189 63.158 8.23 0.00 0.00 2.59
1144 1155 1.808411 GAAGGCAGACGAAACCATCA 58.192 50.000 0.00 0.00 0.00 3.07
1225 1236 3.184003 GTCGTAAACTCCGGCGGC 61.184 66.667 23.83 4.77 0.00 6.53
1294 1305 4.657824 CACGACGTCCGCCACCTT 62.658 66.667 10.58 0.00 43.32 3.50
1505 1516 0.037326 CTACTCTCTGGCGCCAACAA 60.037 55.000 32.09 17.64 0.00 2.83
1508 1519 1.294659 CTCTCTGGCGCCAACAACTC 61.295 60.000 32.09 0.00 0.00 3.01
1712 1727 0.106015 AGCTGAAGTTTGGGTGGCTT 60.106 50.000 0.00 0.00 0.00 4.35
2044 2349 2.579410 TCTGTTCAAAGTAAGGGGCC 57.421 50.000 0.00 0.00 0.00 5.80
2049 2354 3.082548 GTTCAAAGTAAGGGGCCTTCTC 58.917 50.000 0.84 0.00 37.47 2.87
2050 2355 2.632537 TCAAAGTAAGGGGCCTTCTCT 58.367 47.619 0.84 0.00 37.47 3.10
2054 2359 2.122768 AGTAAGGGGCCTTCTCTGATG 58.877 52.381 0.84 0.00 37.47 3.07
2060 2365 0.467804 GGCCTTCTCTGATGTCTCCC 59.532 60.000 0.00 0.00 0.00 4.30
2118 2423 6.146837 CCACTCAATCTTAGTTTCTGTGTCTG 59.853 42.308 0.00 0.00 0.00 3.51
2217 2522 1.571919 ATGCCGTCGCTTTCTCATAC 58.428 50.000 0.00 0.00 35.36 2.39
2316 2621 3.814842 TGTTGAATAAGCTGGTGAGTGTG 59.185 43.478 0.00 0.00 0.00 3.82
2357 2662 7.042950 GCTCTCATCATATATGCATTCTGTCT 58.957 38.462 3.54 0.00 0.00 3.41
2620 2926 8.209917 ACGGGATAGCTTTCTTAATTTTACTG 57.790 34.615 4.10 0.00 0.00 2.74
2716 3026 9.604626 CTGAGACACTTTTCTTGTCATAATTTC 57.395 33.333 5.36 0.00 45.00 2.17
2827 3137 2.175931 TGTTAAGGGTGAAGCAGGGAAA 59.824 45.455 0.00 0.00 0.00 3.13
2971 3281 5.965033 ATTGTTATGGGTGAGAGTGAGAT 57.035 39.130 0.00 0.00 0.00 2.75
3017 3327 0.466189 CATTGCTTGGGGCCGTCTAT 60.466 55.000 0.00 0.00 40.92 1.98
3171 3481 7.790027 AGATCAGACAGTAACAATAGAAGCAT 58.210 34.615 0.00 0.00 0.00 3.79
3271 3581 3.017442 GGGAGAAGGTTAAAGATGCCAC 58.983 50.000 0.00 0.00 0.00 5.01
3491 3801 4.152647 TGCCGTCTAATCCATATCACTCT 58.847 43.478 0.00 0.00 0.00 3.24
3606 3916 6.070194 CCCTTTCCTGACCTGTTCTATAGAAA 60.070 42.308 16.73 6.91 35.58 2.52
3659 3970 3.727726 AGTTGGGCTAAACATTTGCAAC 58.272 40.909 0.00 0.00 32.21 4.17
3776 4087 5.525745 TCATGCTTTGTTTAAACGAGTGAGA 59.474 36.000 13.45 9.59 0.00 3.27
3797 4108 2.045524 TGTGAACCAATGGGCATGTTT 58.954 42.857 3.55 0.00 37.90 2.83
3814 4125 3.194062 TGTTTGCTTAAAAGTTGCAGCC 58.806 40.909 0.00 0.00 38.01 4.85
3929 4248 0.798776 CTTTTGTCCGGCTACTGCTG 59.201 55.000 0.00 0.00 44.81 4.41
3969 4289 6.021596 GTGACACACTGACACTTAAAGTTTG 58.978 40.000 0.00 0.00 39.34 2.93
4143 4464 8.573885 ACTATATCAATCCTGATGCACAATTTG 58.426 33.333 0.00 0.00 42.48 2.32
4284 4712 7.920682 ACTTCATTTCCTTACACATGTGTTTTC 59.079 33.333 34.66 0.00 41.83 2.29
4592 5025 7.372451 TGGTTTAACTGTATTGCATCACTAC 57.628 36.000 0.00 0.00 0.00 2.73
4600 5033 7.094631 ACTGTATTGCATCACTACGTTTTCTA 58.905 34.615 0.00 0.00 0.00 2.10
4622 5055 7.623630 TCTAGCATTGCCTATAAGCATTGATA 58.376 34.615 18.10 15.40 43.49 2.15
4706 5140 5.763204 ACAAGACTTTGTTTGGATATCGTGT 59.237 36.000 0.00 0.00 45.01 4.49
4783 5225 2.281484 CCAAGTCCCGTGGTGGTG 60.281 66.667 0.00 0.00 35.15 4.17
4887 5329 9.762229 AGTTCAGAACGTAAAGACAGAAGGTCC 62.762 44.444 7.68 0.00 41.14 4.46
4943 5403 2.377628 GACAGTGGCCACGACAAGGA 62.378 60.000 29.68 0.00 36.20 3.36
4945 5405 1.071471 AGTGGCCACGACAAGGAAG 59.929 57.895 29.68 0.00 36.20 3.46
4946 5406 1.227853 GTGGCCACGACAAGGAAGT 60.228 57.895 22.49 0.00 0.00 3.01
4947 5407 0.034337 GTGGCCACGACAAGGAAGTA 59.966 55.000 22.49 0.00 0.00 2.24
4948 5408 0.759959 TGGCCACGACAAGGAAGTAA 59.240 50.000 0.00 0.00 0.00 2.24
4949 5409 1.154197 GGCCACGACAAGGAAGTAAC 58.846 55.000 0.00 0.00 0.00 2.50
4950 5410 1.270678 GGCCACGACAAGGAAGTAACT 60.271 52.381 0.00 0.00 0.00 2.24
4951 5411 2.028748 GGCCACGACAAGGAAGTAACTA 60.029 50.000 0.00 0.00 0.00 2.24
4952 5412 3.555586 GGCCACGACAAGGAAGTAACTAA 60.556 47.826 0.00 0.00 0.00 2.24
4953 5413 4.060205 GCCACGACAAGGAAGTAACTAAA 58.940 43.478 0.00 0.00 0.00 1.85
4954 5414 4.512571 GCCACGACAAGGAAGTAACTAAAA 59.487 41.667 0.00 0.00 0.00 1.52
4955 5415 5.333875 GCCACGACAAGGAAGTAACTAAAAG 60.334 44.000 0.00 0.00 0.00 2.27
4956 5416 5.333875 CCACGACAAGGAAGTAACTAAAAGC 60.334 44.000 0.00 0.00 0.00 3.51
4957 5417 5.235616 CACGACAAGGAAGTAACTAAAAGCA 59.764 40.000 0.00 0.00 0.00 3.91
4958 5418 5.818857 ACGACAAGGAAGTAACTAAAAGCAA 59.181 36.000 0.00 0.00 0.00 3.91
4959 5419 6.018180 ACGACAAGGAAGTAACTAAAAGCAAG 60.018 38.462 0.00 0.00 0.00 4.01
4960 5420 6.565999 CGACAAGGAAGTAACTAAAAGCAAGG 60.566 42.308 0.00 0.00 0.00 3.61
4961 5421 5.535030 ACAAGGAAGTAACTAAAAGCAAGGG 59.465 40.000 0.00 0.00 0.00 3.95
4962 5422 5.578157 AGGAAGTAACTAAAAGCAAGGGA 57.422 39.130 0.00 0.00 0.00 4.20
5003 5463 4.867608 GGACTCAAGCACTTCTGATAGAAC 59.132 45.833 0.00 0.00 29.89 3.01
5191 5651 2.410730 CCTAACACGCTAAAAGACACGG 59.589 50.000 0.00 0.00 0.00 4.94
5192 5652 1.944032 AACACGCTAAAAGACACGGT 58.056 45.000 0.00 0.00 0.00 4.83
5258 5718 3.285484 CTTCAAATAGTGAGCCTGGCAT 58.715 45.455 22.65 5.85 37.61 4.40
5488 5948 4.614535 GCAACAAGAATGATCTGGTGACAC 60.615 45.833 1.35 0.00 39.00 3.67
5489 5949 4.356405 ACAAGAATGATCTGGTGACACA 57.644 40.909 8.08 0.00 38.47 3.72
5490 5950 4.321718 ACAAGAATGATCTGGTGACACAG 58.678 43.478 8.08 3.51 38.47 3.66
5498 5958 4.403752 TGATCTGGTGACACAGGAGATAAG 59.596 45.833 8.08 0.00 38.98 1.73
5564 6024 1.680249 GCCTCCAGAACCTTTGGCTAG 60.680 57.143 0.00 0.00 37.58 3.42
5585 6045 0.896226 GAACGGGAAGGTAGCTCTGT 59.104 55.000 0.00 0.00 0.00 3.41
5586 6046 0.608640 AACGGGAAGGTAGCTCTGTG 59.391 55.000 0.00 0.00 0.00 3.66
5587 6047 1.153549 CGGGAAGGTAGCTCTGTGC 60.154 63.158 0.00 0.00 43.29 4.57
5588 6048 1.888436 CGGGAAGGTAGCTCTGTGCA 61.888 60.000 4.39 0.00 45.94 4.57
5589 6049 0.543749 GGGAAGGTAGCTCTGTGCAT 59.456 55.000 4.39 0.00 45.94 3.96
5590 6050 1.065126 GGGAAGGTAGCTCTGTGCATT 60.065 52.381 4.39 0.00 45.94 3.56
5591 6051 2.619074 GGGAAGGTAGCTCTGTGCATTT 60.619 50.000 4.39 0.00 45.94 2.32
5592 6052 3.084786 GGAAGGTAGCTCTGTGCATTTT 58.915 45.455 4.39 0.00 45.94 1.82
5593 6053 3.119708 GGAAGGTAGCTCTGTGCATTTTG 60.120 47.826 4.39 0.00 45.94 2.44
5594 6054 3.423539 AGGTAGCTCTGTGCATTTTGA 57.576 42.857 4.39 0.00 45.94 2.69
5595 6055 3.754965 AGGTAGCTCTGTGCATTTTGAA 58.245 40.909 4.39 0.00 45.94 2.69
5596 6056 3.503748 AGGTAGCTCTGTGCATTTTGAAC 59.496 43.478 4.39 0.00 45.94 3.18
5597 6057 2.693797 AGCTCTGTGCATTTTGAACG 57.306 45.000 4.39 0.00 45.94 3.95
5598 6058 1.267806 AGCTCTGTGCATTTTGAACGG 59.732 47.619 4.39 0.00 45.94 4.44
5599 6059 1.666888 GCTCTGTGCATTTTGAACGGG 60.667 52.381 0.00 0.00 42.31 5.28
5600 6060 1.879380 CTCTGTGCATTTTGAACGGGA 59.121 47.619 0.00 0.00 32.96 5.14
5601 6061 2.293122 CTCTGTGCATTTTGAACGGGAA 59.707 45.455 0.00 0.00 32.96 3.97
5602 6062 2.293122 TCTGTGCATTTTGAACGGGAAG 59.707 45.455 0.00 0.00 32.96 3.46
5603 6063 1.339610 TGTGCATTTTGAACGGGAAGG 59.660 47.619 0.00 0.00 0.00 3.46
5604 6064 1.339929 GTGCATTTTGAACGGGAAGGT 59.660 47.619 0.00 0.00 0.00 3.50
5605 6065 2.554893 GTGCATTTTGAACGGGAAGGTA 59.445 45.455 0.00 0.00 0.00 3.08
5606 6066 2.817258 TGCATTTTGAACGGGAAGGTAG 59.183 45.455 0.00 0.00 0.00 3.18
5607 6067 2.415491 GCATTTTGAACGGGAAGGTAGC 60.415 50.000 0.00 0.00 0.00 3.58
5608 6068 2.943036 TTTTGAACGGGAAGGTAGCT 57.057 45.000 0.00 0.00 0.00 3.32
5609 6069 2.467566 TTTGAACGGGAAGGTAGCTC 57.532 50.000 0.00 0.00 0.00 4.09
5610 6070 1.640917 TTGAACGGGAAGGTAGCTCT 58.359 50.000 0.00 0.00 0.00 4.09
5611 6071 1.183549 TGAACGGGAAGGTAGCTCTC 58.816 55.000 0.00 0.00 0.00 3.20
5768 6228 3.434309 ACAAACATGATTTGGAGGAGGG 58.566 45.455 18.59 0.00 33.92 4.30
5853 6313 2.357637 ACACAAACGTAAGCACAAGCAT 59.642 40.909 0.00 0.00 45.49 3.79
5928 6391 1.347707 AGTTCCAAGTCAAGGCATCGA 59.652 47.619 0.00 0.00 0.00 3.59
6051 6514 1.589716 ATGAGCAAACTCTTGGCCGC 61.590 55.000 0.00 0.00 43.85 6.53
6068 6531 2.694760 GCGCTGAAGCCTCCCAAAG 61.695 63.158 0.00 0.00 37.91 2.77
6327 6796 0.478072 TCCCATTGTCTGGCACTGTT 59.522 50.000 0.00 0.00 44.46 3.16
6351 6820 4.511826 GTCTGCATTTATAGCGCCTACTTT 59.488 41.667 2.29 0.00 33.85 2.66
6367 6836 3.899981 TTTCCGTCTGCTGGCGCAT 62.900 57.895 12.54 0.00 46.74 4.73
6368 6837 4.819761 TCCGTCTGCTGGCGCATC 62.820 66.667 12.54 0.00 46.74 3.91
6396 6865 9.327628 AGAAGCATTATAGCATAGCATGATTAG 57.672 33.333 0.00 0.00 36.85 1.73
6400 6869 6.892310 TTATAGCATAGCATGATTAGTGCG 57.108 37.500 0.00 0.00 46.86 5.34
6404 6873 3.496130 GCATAGCATGATTAGTGCGAACT 59.504 43.478 0.00 0.00 46.86 3.01
6405 6874 4.024556 GCATAGCATGATTAGTGCGAACTT 60.025 41.667 0.00 0.00 46.86 2.66
6406 6875 5.504665 GCATAGCATGATTAGTGCGAACTTT 60.505 40.000 0.00 0.00 46.86 2.66
6451 6920 5.316987 AGTTCCTCAGTCCCAAAATGTAAG 58.683 41.667 0.00 0.00 0.00 2.34
6452 6921 5.073144 AGTTCCTCAGTCCCAAAATGTAAGA 59.927 40.000 0.00 0.00 0.00 2.10
6453 6922 5.165961 TCCTCAGTCCCAAAATGTAAGAG 57.834 43.478 0.00 0.00 0.00 2.85
6454 6923 4.597507 TCCTCAGTCCCAAAATGTAAGAGT 59.402 41.667 0.00 0.00 0.00 3.24
6455 6924 5.783360 TCCTCAGTCCCAAAATGTAAGAGTA 59.217 40.000 0.00 0.00 0.00 2.59
6458 6927 8.432805 CCTCAGTCCCAAAATGTAAGAGTATAT 58.567 37.037 0.00 0.00 0.00 0.86
6524 6997 9.905713 TCTTGCTTGAAGTGGTTATATATCTTT 57.094 29.630 0.00 0.00 32.90 2.52
6525 6998 9.941664 CTTGCTTGAAGTGGTTATATATCTTTG 57.058 33.333 0.00 0.00 0.00 2.77
6526 6999 9.679661 TTGCTTGAAGTGGTTATATATCTTTGA 57.320 29.630 0.00 0.00 0.00 2.69
6527 7000 9.109393 TGCTTGAAGTGGTTATATATCTTTGAC 57.891 33.333 0.00 0.00 0.00 3.18
6528 7001 9.331282 GCTTGAAGTGGTTATATATCTTTGACT 57.669 33.333 0.00 0.00 0.00 3.41
6534 7007 9.594936 AGTGGTTATATATCTTTGACTCTAGCT 57.405 33.333 0.00 0.00 0.00 3.32
6535 7008 9.632807 GTGGTTATATATCTTTGACTCTAGCTG 57.367 37.037 0.00 0.00 0.00 4.24
6536 7009 8.307483 TGGTTATATATCTTTGACTCTAGCTGC 58.693 37.037 0.00 0.00 0.00 5.25
6537 7010 7.486551 GGTTATATATCTTTGACTCTAGCTGCG 59.513 40.741 0.00 0.00 0.00 5.18
6538 7011 6.825944 ATATATCTTTGACTCTAGCTGCGA 57.174 37.500 0.00 0.00 0.00 5.10
6542 7015 2.812358 TTGACTCTAGCTGCGAAACA 57.188 45.000 0.00 0.00 0.00 2.83
6562 7057 4.398319 ACAGTACCACTTTTCAGGATTGG 58.602 43.478 0.00 0.00 0.00 3.16
6581 7076 3.791320 TGGAGGACATCAGGAGTAAAGT 58.209 45.455 0.00 0.00 0.00 2.66
6583 7078 5.338632 TGGAGGACATCAGGAGTAAAGTTA 58.661 41.667 0.00 0.00 0.00 2.24
6587 7082 7.147637 GGAGGACATCAGGAGTAAAGTTAGATT 60.148 40.741 0.00 0.00 0.00 2.40
6589 7084 8.697292 AGGACATCAGGAGTAAAGTTAGATTAC 58.303 37.037 0.00 0.00 34.24 1.89
6604 7099 9.520515 AAGTTAGATTACCAGTTGATGTGAATT 57.479 29.630 0.00 0.00 0.00 2.17
6605 7100 9.520515 AGTTAGATTACCAGTTGATGTGAATTT 57.479 29.630 0.00 0.00 0.00 1.82
6614 7139 9.787435 ACCAGTTGATGTGAATTTTAACTACTA 57.213 29.630 0.00 0.00 0.00 1.82
6646 7171 2.053627 CTGAAGAAAATGTTGCACCGC 58.946 47.619 0.00 0.00 0.00 5.68
6702 7230 1.553884 CCTACCAAGGGAGTGTGGGTA 60.554 57.143 0.00 0.00 39.48 3.69
6703 7231 1.831736 CTACCAAGGGAGTGTGGGTAG 59.168 57.143 0.00 0.00 43.48 3.18
6704 7232 0.192566 ACCAAGGGAGTGTGGGTAGA 59.807 55.000 0.00 0.00 39.39 2.59
6705 7233 0.905357 CCAAGGGAGTGTGGGTAGAG 59.095 60.000 0.00 0.00 0.00 2.43
6706 7234 0.250513 CAAGGGAGTGTGGGTAGAGC 59.749 60.000 0.00 0.00 0.00 4.09
6709 7237 1.331399 GGGAGTGTGGGTAGAGCCTC 61.331 65.000 0.00 0.00 37.43 4.70
6712 7240 1.215647 GTGTGGGTAGAGCCTCGTG 59.784 63.158 0.00 0.00 37.43 4.35
6713 7241 1.076014 TGTGGGTAGAGCCTCGTGA 59.924 57.895 0.00 0.00 37.43 4.35
6714 7242 0.324368 TGTGGGTAGAGCCTCGTGAT 60.324 55.000 0.00 0.00 37.43 3.06
6783 9076 3.834813 AGTCTGCTTCTATCTGAACACCA 59.165 43.478 0.00 0.00 0.00 4.17
6851 9146 6.019152 CGAATACTGATTTTGTTACAACCCG 58.981 40.000 0.00 0.00 0.00 5.28
6871 9166 4.609691 CGGCACTCGGTATTTATTTTGT 57.390 40.909 0.00 0.00 34.75 2.83
6872 9167 4.339429 CGGCACTCGGTATTTATTTTGTG 58.661 43.478 0.00 0.00 34.75 3.33
6873 9168 4.102649 GGCACTCGGTATTTATTTTGTGC 58.897 43.478 0.00 0.00 45.78 4.57
6874 9169 3.783943 GCACTCGGTATTTATTTTGTGCG 59.216 43.478 0.00 0.00 39.72 5.34
6876 9171 5.729454 GCACTCGGTATTTATTTTGTGCGAT 60.729 40.000 0.00 0.00 39.72 4.58
6877 9172 5.901884 CACTCGGTATTTATTTTGTGCGATC 59.098 40.000 0.00 0.00 0.00 3.69
6878 9173 5.007332 ACTCGGTATTTATTTTGTGCGATCC 59.993 40.000 0.00 0.00 0.00 3.36
6879 9174 5.120399 TCGGTATTTATTTTGTGCGATCCT 58.880 37.500 0.00 0.00 0.00 3.24
6880 9175 5.007234 TCGGTATTTATTTTGTGCGATCCTG 59.993 40.000 0.00 0.00 0.00 3.86
6893 9188 4.195416 TGCGATCCTGCAATACAATACAA 58.805 39.130 0.00 0.00 43.02 2.41
6903 9198 8.465999 CCTGCAATACAATACAATACCTGAAAA 58.534 33.333 0.00 0.00 0.00 2.29
6921 9216 8.364894 ACCTGAAAAGCTTATTATTTTCCGTTT 58.635 29.630 0.00 0.00 42.23 3.60
6994 9291 5.782893 TGCCAAAGTTTTGCTAGTACAAT 57.217 34.783 12.40 0.00 36.86 2.71
7031 9333 4.994907 AACAACAAGTCAAAACCCTACC 57.005 40.909 0.00 0.00 0.00 3.18
7117 9419 1.078848 CTTTGTCAGCCTCCTCCCG 60.079 63.158 0.00 0.00 0.00 5.14
7126 9428 1.455959 CCTCCTCCCGGACGAGATT 60.456 63.158 13.44 0.00 34.92 2.40
7323 9625 3.121030 CAACCGCCTCCGCAAGAG 61.121 66.667 0.00 0.00 42.83 2.85
7324 9626 3.626924 AACCGCCTCCGCAAGAGT 61.627 61.111 0.49 0.00 41.47 3.24
7371 9673 2.173356 CCAAGATCCTATCCAAGCACCA 59.827 50.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
305 306 4.890158 TCAGTCTGTTCAAGCAAGGATA 57.110 40.909 0.00 0.00 0.00 2.59
603 605 1.987855 CCTCCAACCGCCTCCTGTA 60.988 63.158 0.00 0.00 0.00 2.74
604 606 3.322466 CCTCCAACCGCCTCCTGT 61.322 66.667 0.00 0.00 0.00 4.00
612 614 2.978010 AACTTGCGCCTCCAACCG 60.978 61.111 4.18 0.00 0.00 4.44
614 616 2.644992 CCAACTTGCGCCTCCAAC 59.355 61.111 4.18 0.00 0.00 3.77
616 618 4.577677 TGCCAACTTGCGCCTCCA 62.578 61.111 4.18 0.00 0.00 3.86
617 619 4.043200 GTGCCAACTTGCGCCTCC 62.043 66.667 4.18 0.00 35.74 4.30
618 620 2.348605 TTTGTGCCAACTTGCGCCTC 62.349 55.000 4.18 0.00 41.01 4.70
620 622 2.105930 TTTGTGCCAACTTGCGCC 59.894 55.556 4.18 0.00 41.01 6.53
621 623 2.237066 GGTTTGTGCCAACTTGCGC 61.237 57.895 0.00 0.00 42.05 6.09
623 625 1.227527 GGGGTTTGTGCCAACTTGC 60.228 57.895 0.00 0.00 0.00 4.01
624 626 1.048160 AGGGGGTTTGTGCCAACTTG 61.048 55.000 0.00 0.00 0.00 3.16
625 627 0.326143 AAGGGGGTTTGTGCCAACTT 60.326 50.000 0.00 0.00 0.00 2.66
626 628 0.759060 GAAGGGGGTTTGTGCCAACT 60.759 55.000 0.00 0.00 0.00 3.16
627 629 1.745890 GAAGGGGGTTTGTGCCAAC 59.254 57.895 0.00 0.00 0.00 3.77
628 630 1.830408 CGAAGGGGGTTTGTGCCAA 60.830 57.895 0.00 0.00 0.00 4.52
629 631 2.203422 CGAAGGGGGTTTGTGCCA 60.203 61.111 0.00 0.00 0.00 4.92
630 632 1.802337 GAACGAAGGGGGTTTGTGCC 61.802 60.000 0.00 0.00 32.55 5.01
632 634 1.512156 CCGAACGAAGGGGGTTTGTG 61.512 60.000 0.00 0.00 32.55 3.33
633 635 1.228033 CCGAACGAAGGGGGTTTGT 60.228 57.895 0.00 0.00 33.75 2.83
635 637 0.402887 ATTCCGAACGAAGGGGGTTT 59.597 50.000 0.00 0.00 32.78 3.27
636 638 0.402887 AATTCCGAACGAAGGGGGTT 59.597 50.000 0.00 0.00 32.78 4.11
637 639 1.065926 GTAATTCCGAACGAAGGGGGT 60.066 52.381 0.00 0.00 32.78 4.95
638 640 1.208776 AGTAATTCCGAACGAAGGGGG 59.791 52.381 0.00 0.00 32.78 5.40
639 641 2.547826 GAGTAATTCCGAACGAAGGGG 58.452 52.381 0.00 0.00 32.78 4.79
641 643 1.587034 GCGAGTAATTCCGAACGAAGG 59.413 52.381 0.00 0.00 32.78 3.46
642 644 1.587034 GGCGAGTAATTCCGAACGAAG 59.413 52.381 0.00 0.00 32.78 3.79
643 645 1.632422 GGCGAGTAATTCCGAACGAA 58.368 50.000 0.00 0.00 34.14 3.85
644 646 0.523968 CGGCGAGTAATTCCGAACGA 60.524 55.000 0.00 0.00 45.53 3.85
645 647 1.915093 CGGCGAGTAATTCCGAACG 59.085 57.895 0.00 0.00 45.53 3.95
650 652 3.869246 TCATTTCTTCGGCGAGTAATTCC 59.131 43.478 10.46 0.00 0.00 3.01
651 653 5.464965 TTCATTTCTTCGGCGAGTAATTC 57.535 39.130 10.46 0.00 0.00 2.17
652 654 5.354234 ACATTCATTTCTTCGGCGAGTAATT 59.646 36.000 10.46 2.49 0.00 1.40
653 655 4.876107 ACATTCATTTCTTCGGCGAGTAAT 59.124 37.500 10.46 8.42 0.00 1.89
654 656 4.250464 ACATTCATTTCTTCGGCGAGTAA 58.750 39.130 10.46 5.76 0.00 2.24
655 657 3.857052 ACATTCATTTCTTCGGCGAGTA 58.143 40.909 10.46 0.00 0.00 2.59
658 660 5.352846 TGAAATACATTCATTTCTTCGGCGA 59.647 36.000 4.99 4.99 43.08 5.54
691 693 9.478768 TCACAAAAATGAACGTATCTACAACTA 57.521 29.630 0.00 0.00 0.00 2.24
693 695 8.065407 TGTCACAAAAATGAACGTATCTACAAC 58.935 33.333 0.00 0.00 0.00 3.32
694 696 8.144155 TGTCACAAAAATGAACGTATCTACAA 57.856 30.769 0.00 0.00 0.00 2.41
695 697 7.716768 TGTCACAAAAATGAACGTATCTACA 57.283 32.000 0.00 0.00 0.00 2.74
696 698 8.280497 ACTTGTCACAAAAATGAACGTATCTAC 58.720 33.333 0.00 0.00 0.00 2.59
697 699 8.373048 ACTTGTCACAAAAATGAACGTATCTA 57.627 30.769 0.00 0.00 0.00 1.98
698 700 7.259290 ACTTGTCACAAAAATGAACGTATCT 57.741 32.000 0.00 0.00 0.00 1.98
699 701 8.280497 AGTACTTGTCACAAAAATGAACGTATC 58.720 33.333 0.00 0.00 0.00 2.24
700 702 8.149973 AGTACTTGTCACAAAAATGAACGTAT 57.850 30.769 0.00 0.00 0.00 3.06
701 703 7.254522 GGAGTACTTGTCACAAAAATGAACGTA 60.255 37.037 0.00 0.00 0.00 3.57
703 705 5.907391 GGAGTACTTGTCACAAAAATGAACG 59.093 40.000 0.00 0.00 0.00 3.95
704 706 6.039382 AGGGAGTACTTGTCACAAAAATGAAC 59.961 38.462 0.00 0.00 0.00 3.18
706 708 5.690865 AGGGAGTACTTGTCACAAAAATGA 58.309 37.500 0.00 0.00 0.00 2.57
707 709 5.048713 GGAGGGAGTACTTGTCACAAAAATG 60.049 44.000 0.00 0.00 0.00 2.32
709 711 4.457466 GGAGGGAGTACTTGTCACAAAAA 58.543 43.478 0.00 0.00 0.00 1.94
710 712 3.493699 CGGAGGGAGTACTTGTCACAAAA 60.494 47.826 0.00 0.00 0.00 2.44
712 714 1.616865 CGGAGGGAGTACTTGTCACAA 59.383 52.381 0.00 0.00 0.00 3.33
713 715 1.254026 CGGAGGGAGTACTTGTCACA 58.746 55.000 0.00 0.00 0.00 3.58
714 716 1.254954 ACGGAGGGAGTACTTGTCAC 58.745 55.000 0.00 0.00 0.00 3.67
715 717 1.891150 GAACGGAGGGAGTACTTGTCA 59.109 52.381 0.00 0.00 0.00 3.58
716 718 1.204231 GGAACGGAGGGAGTACTTGTC 59.796 57.143 0.00 0.00 0.00 3.18
717 719 1.203149 AGGAACGGAGGGAGTACTTGT 60.203 52.381 0.00 0.00 0.00 3.16
719 721 3.463048 TTAGGAACGGAGGGAGTACTT 57.537 47.619 0.00 0.00 0.00 2.24
720 722 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
721 723 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
744 746 7.500992 TCACAGTGAAATCTCTACAAAGACTT 58.499 34.615 0.00 0.00 0.00 3.01
745 747 7.055667 TCACAGTGAAATCTCTACAAAGACT 57.944 36.000 0.00 0.00 0.00 3.24
752 754 5.297547 TGTGGTTCACAGTGAAATCTCTAC 58.702 41.667 17.83 13.06 39.62 2.59
768 770 9.307121 GCATCTATATACATCTGTATGTGGTTC 57.693 37.037 12.10 0.75 45.99 3.62
769 771 8.815912 TGCATCTATATACATCTGTATGTGGTT 58.184 33.333 12.10 1.86 45.99 3.67
770 772 8.366359 TGCATCTATATACATCTGTATGTGGT 57.634 34.615 12.10 0.00 45.99 4.16
771 773 9.828039 AATGCATCTATATACATCTGTATGTGG 57.172 33.333 12.10 8.21 45.99 4.17
811 815 8.041919 TGGACTACATACGGAACAAAATGAATA 58.958 33.333 0.00 0.00 0.00 1.75
813 817 6.231951 TGGACTACATACGGAACAAAATGAA 58.768 36.000 0.00 0.00 0.00 2.57
821 825 8.603242 ATTTCATTATGGACTACATACGGAAC 57.397 34.615 0.00 0.00 41.61 3.62
848 852 8.767085 CCGTTTGTAAATGTAAGTCTTTGTAGA 58.233 33.333 0.00 0.00 0.00 2.59
849 853 8.767085 TCCGTTTGTAAATGTAAGTCTTTGTAG 58.233 33.333 0.00 0.00 0.00 2.74
850 854 8.659925 TCCGTTTGTAAATGTAAGTCTTTGTA 57.340 30.769 0.00 0.00 0.00 2.41
851 855 7.556733 TCCGTTTGTAAATGTAAGTCTTTGT 57.443 32.000 0.00 0.00 0.00 2.83
855 859 7.713942 ACTTCTTCCGTTTGTAAATGTAAGTCT 59.286 33.333 3.02 0.00 0.00 3.24
856 860 7.858583 ACTTCTTCCGTTTGTAAATGTAAGTC 58.141 34.615 3.02 0.00 0.00 3.01
857 861 7.797038 ACTTCTTCCGTTTGTAAATGTAAGT 57.203 32.000 3.02 0.00 0.00 2.24
860 864 8.836268 ATGTACTTCTTCCGTTTGTAAATGTA 57.164 30.769 0.00 0.00 0.00 2.29
861 865 7.739498 ATGTACTTCTTCCGTTTGTAAATGT 57.261 32.000 0.00 0.00 0.00 2.71
862 866 9.755064 CTAATGTACTTCTTCCGTTTGTAAATG 57.245 33.333 0.00 0.00 0.00 2.32
868 872 7.487189 ACGATACTAATGTACTTCTTCCGTTTG 59.513 37.037 0.00 0.00 0.00 2.93
876 880 7.176340 GTGGGGATACGATACTAATGTACTTCT 59.824 40.741 0.00 0.00 37.60 2.85
878 882 6.210185 GGTGGGGATACGATACTAATGTACTT 59.790 42.308 0.00 0.00 37.60 2.24
893 897 1.658673 CTAGTCGCGGTGGGGATAC 59.341 63.158 6.13 0.00 37.46 2.24
898 902 4.514577 CAGGCTAGTCGCGGTGGG 62.515 72.222 6.13 0.00 40.44 4.61
903 907 0.171455 AAGAGTTCAGGCTAGTCGCG 59.829 55.000 0.00 0.00 40.44 5.87
904 908 2.094442 AGAAAGAGTTCAGGCTAGTCGC 60.094 50.000 0.00 0.00 36.09 5.19
910 914 5.012148 TGTTTAGCTAGAAAGAGTTCAGGCT 59.988 40.000 0.00 9.75 42.43 4.58
1120 1131 1.070786 TTTCGTCTGCCTTCGCCTT 59.929 52.632 0.00 0.00 0.00 4.35
1121 1132 1.668151 GTTTCGTCTGCCTTCGCCT 60.668 57.895 0.00 0.00 0.00 5.52
1122 1133 2.677979 GGTTTCGTCTGCCTTCGCC 61.678 63.158 0.00 0.00 0.00 5.54
1123 1134 1.298859 ATGGTTTCGTCTGCCTTCGC 61.299 55.000 0.00 0.00 0.00 4.70
1144 1155 1.487976 ACGATCTGCAGATCCATTGGT 59.512 47.619 38.53 29.79 46.16 3.67
1225 1236 2.760385 GACCAGGGGACGAGGGAG 60.760 72.222 0.00 0.00 35.08 4.30
1736 1751 3.571828 AGCATCTCAGTGTCATAGCGTAT 59.428 43.478 0.00 0.00 0.00 3.06
1814 2116 4.046286 AGGAACCCAACAGATGCAATAA 57.954 40.909 0.00 0.00 0.00 1.40
1972 2276 5.923733 TCCTTCCTGCAAACTTACAAAAA 57.076 34.783 0.00 0.00 0.00 1.94
2044 2349 2.649190 TCTCGGGAGACATCAGAGAAG 58.351 52.381 0.00 0.00 37.62 2.85
2049 2354 4.078537 AGATACATCTCGGGAGACATCAG 58.921 47.826 0.00 0.00 40.75 2.90
2050 2355 4.105754 AGATACATCTCGGGAGACATCA 57.894 45.455 0.00 0.00 40.75 3.07
2054 2359 3.637229 TCCAAAGATACATCTCGGGAGAC 59.363 47.826 0.00 0.00 40.75 3.36
2060 2365 4.625028 TGCAGATCCAAAGATACATCTCG 58.375 43.478 0.00 0.00 35.76 4.04
2316 2621 1.082690 GAGCAGACAGTAGGCTTTGC 58.917 55.000 0.00 0.00 38.15 3.68
2716 3026 1.685148 GGAGGGAGGCTGCAAATTAG 58.315 55.000 8.68 0.00 0.00 1.73
2843 3153 2.715046 TGATGGTCAGGCATCAAGAAC 58.285 47.619 0.00 0.00 35.19 3.01
3017 3327 3.677156 TCATCCTCATCTCCAGACTCA 57.323 47.619 0.00 0.00 0.00 3.41
3100 3410 1.753073 GGAATGATGAGCCTTTGTGGG 59.247 52.381 0.00 0.00 36.00 4.61
3491 3801 7.423844 TTCCTGAAGCATCTTGAGATAGTAA 57.576 36.000 0.00 0.00 32.63 2.24
3617 3928 9.653287 CCAACTAAACTATCTGACAAATGTCTA 57.347 33.333 14.15 3.81 44.99 2.59
3639 3950 3.727726 AGTTGCAAATGTTTAGCCCAAC 58.272 40.909 0.00 0.00 33.29 3.77
3659 3970 3.557264 GGTGTGAAGGGAAGGAGTACAAG 60.557 52.174 0.00 0.00 0.00 3.16
3776 4087 1.941377 ACATGCCCATTGGTTCACAT 58.059 45.000 1.20 0.00 0.00 3.21
3797 4108 0.318614 GCGGCTGCAACTTTTAAGCA 60.319 50.000 14.08 0.00 42.15 3.91
3929 4248 3.743396 GTGTCACAGAGAATGGAAGACAC 59.257 47.826 0.00 0.00 44.89 3.67
3969 4289 8.189460 ACTTAATACTCATTCTACAAGACGTCC 58.811 37.037 13.01 0.00 0.00 4.79
4199 4520 9.859427 GAAGAAAACCATGACATCAATCAAATA 57.141 29.630 0.00 0.00 30.82 1.40
4284 4712 5.346822 AGACCAACGCAACTTATAGTTTACG 59.653 40.000 9.10 9.10 36.03 3.18
4338 4767 7.534085 TGATGGTATACATTCGACAGAAAAC 57.466 36.000 5.01 0.00 40.72 2.43
4592 5025 5.007626 TGCTTATAGGCAATGCTAGAAAACG 59.992 40.000 7.13 0.00 39.43 3.60
4600 5033 8.847196 CATATATCAATGCTTATAGGCAATGCT 58.153 33.333 17.62 12.04 45.68 3.79
4643 5076 8.974060 AGAAACAGTTCCAGTATTAAACTTCA 57.026 30.769 0.00 0.00 35.76 3.02
4887 5329 3.201290 ACTTCTATCTTTGCGCTCCATG 58.799 45.455 9.73 0.00 0.00 3.66
4943 5403 4.070009 CCGTCCCTTGCTTTTAGTTACTT 58.930 43.478 0.00 0.00 0.00 2.24
4945 5405 2.745821 CCCGTCCCTTGCTTTTAGTTAC 59.254 50.000 0.00 0.00 0.00 2.50
4946 5406 2.290450 CCCCGTCCCTTGCTTTTAGTTA 60.290 50.000 0.00 0.00 0.00 2.24
4947 5407 1.546998 CCCCGTCCCTTGCTTTTAGTT 60.547 52.381 0.00 0.00 0.00 2.24
4948 5408 0.037734 CCCCGTCCCTTGCTTTTAGT 59.962 55.000 0.00 0.00 0.00 2.24
4949 5409 0.326927 TCCCCGTCCCTTGCTTTTAG 59.673 55.000 0.00 0.00 0.00 1.85
4950 5410 0.772384 TTCCCCGTCCCTTGCTTTTA 59.228 50.000 0.00 0.00 0.00 1.52
4951 5411 0.539669 CTTCCCCGTCCCTTGCTTTT 60.540 55.000 0.00 0.00 0.00 2.27
4952 5412 1.074951 CTTCCCCGTCCCTTGCTTT 59.925 57.895 0.00 0.00 0.00 3.51
4953 5413 2.154074 ACTTCCCCGTCCCTTGCTT 61.154 57.895 0.00 0.00 0.00 3.91
4954 5414 2.529389 ACTTCCCCGTCCCTTGCT 60.529 61.111 0.00 0.00 0.00 3.91
4955 5415 2.359975 CACTTCCCCGTCCCTTGC 60.360 66.667 0.00 0.00 0.00 4.01
4956 5416 1.550130 TAGCACTTCCCCGTCCCTTG 61.550 60.000 0.00 0.00 0.00 3.61
4957 5417 0.838987 TTAGCACTTCCCCGTCCCTT 60.839 55.000 0.00 0.00 0.00 3.95
4958 5418 1.229400 TTAGCACTTCCCCGTCCCT 60.229 57.895 0.00 0.00 0.00 4.20
4959 5419 1.078637 GTTAGCACTTCCCCGTCCC 60.079 63.158 0.00 0.00 0.00 4.46
4960 5420 0.035739 TTGTTAGCACTTCCCCGTCC 59.964 55.000 0.00 0.00 0.00 4.79
4961 5421 1.439679 CTTGTTAGCACTTCCCCGTC 58.560 55.000 0.00 0.00 0.00 4.79
4962 5422 0.036306 CCTTGTTAGCACTTCCCCGT 59.964 55.000 0.00 0.00 0.00 5.28
5003 5463 2.511600 GTGATGGTTCCGCGGAGG 60.512 66.667 29.20 0.07 42.97 4.30
5191 5651 3.498397 CCCTGTATATGGCGAATGTCAAC 59.502 47.826 0.00 0.00 30.39 3.18
5192 5652 3.738982 CCCTGTATATGGCGAATGTCAA 58.261 45.455 0.00 0.00 30.39 3.18
5474 5934 2.825223 TCTCCTGTGTCACCAGATCAT 58.175 47.619 0.00 0.00 34.23 2.45
5475 5935 2.309136 TCTCCTGTGTCACCAGATCA 57.691 50.000 0.00 0.00 34.23 2.92
5488 5948 7.172875 CCTTGCAGATTCATTACTTATCTCCTG 59.827 40.741 0.00 0.00 0.00 3.86
5489 5949 7.222872 CCTTGCAGATTCATTACTTATCTCCT 58.777 38.462 0.00 0.00 0.00 3.69
5490 5950 6.429385 CCCTTGCAGATTCATTACTTATCTCC 59.571 42.308 0.00 0.00 0.00 3.71
5498 5958 1.334869 CGGCCCTTGCAGATTCATTAC 59.665 52.381 0.00 0.00 40.13 1.89
5564 6024 0.896226 AGAGCTACCTTCCCGTTCAC 59.104 55.000 0.00 0.00 0.00 3.18
5585 6045 1.698506 ACCTTCCCGTTCAAAATGCA 58.301 45.000 0.00 0.00 0.00 3.96
5586 6046 2.415491 GCTACCTTCCCGTTCAAAATGC 60.415 50.000 0.00 0.00 0.00 3.56
5587 6047 3.081804 AGCTACCTTCCCGTTCAAAATG 58.918 45.455 0.00 0.00 0.00 2.32
5588 6048 3.009143 AGAGCTACCTTCCCGTTCAAAAT 59.991 43.478 0.00 0.00 0.00 1.82
5589 6049 2.370849 AGAGCTACCTTCCCGTTCAAAA 59.629 45.455 0.00 0.00 0.00 2.44
5590 6050 1.975680 AGAGCTACCTTCCCGTTCAAA 59.024 47.619 0.00 0.00 0.00 2.69
5591 6051 1.549170 GAGAGCTACCTTCCCGTTCAA 59.451 52.381 0.00 0.00 0.00 2.69
5592 6052 1.183549 GAGAGCTACCTTCCCGTTCA 58.816 55.000 0.00 0.00 0.00 3.18
5593 6053 1.135333 CAGAGAGCTACCTTCCCGTTC 59.865 57.143 0.00 0.00 0.00 3.95
5594 6054 1.187087 CAGAGAGCTACCTTCCCGTT 58.813 55.000 0.00 0.00 0.00 4.44
5595 6055 1.324005 GCAGAGAGCTACCTTCCCGT 61.324 60.000 0.00 0.00 41.15 5.28
5596 6056 1.439644 GCAGAGAGCTACCTTCCCG 59.560 63.158 0.00 0.00 41.15 5.14
5597 6057 1.324005 ACGCAGAGAGCTACCTTCCC 61.324 60.000 0.00 0.00 42.61 3.97
5598 6058 0.533032 AACGCAGAGAGCTACCTTCC 59.467 55.000 0.00 0.00 42.61 3.46
5599 6059 2.371910 AAACGCAGAGAGCTACCTTC 57.628 50.000 0.00 0.00 42.61 3.46
5600 6060 2.037251 TCAAAACGCAGAGAGCTACCTT 59.963 45.455 0.00 0.00 42.61 3.50
5601 6061 1.618837 TCAAAACGCAGAGAGCTACCT 59.381 47.619 0.00 0.00 42.61 3.08
5602 6062 2.080286 TCAAAACGCAGAGAGCTACC 57.920 50.000 0.00 0.00 42.61 3.18
5603 6063 3.441492 GTTCAAAACGCAGAGAGCTAC 57.559 47.619 0.00 0.00 42.61 3.58
5652 6112 4.816385 TGCTTGATCATATTCGAACCTTCC 59.184 41.667 0.00 0.00 0.00 3.46
5752 6212 3.659183 ACTTCCCTCCTCCAAATCATG 57.341 47.619 0.00 0.00 0.00 3.07
5768 6228 7.148390 GCCTCTTCCTTGAGTGTTTATAACTTC 60.148 40.741 0.00 0.00 32.50 3.01
5928 6391 3.502595 CGTAGTGATGATCGTCCCTATGT 59.497 47.826 15.01 0.00 0.00 2.29
6051 6514 2.694760 GCTTTGGGAGGCTTCAGCG 61.695 63.158 0.00 0.00 43.26 5.18
6327 6796 2.620251 AGGCGCTATAAATGCAGACA 57.380 45.000 7.64 0.00 0.00 3.41
6367 6836 5.488262 TGCTATGCTATAATGCTTCTGGA 57.512 39.130 0.00 0.00 0.00 3.86
6368 6837 5.878669 TCATGCTATGCTATAATGCTTCTGG 59.121 40.000 0.00 0.00 0.00 3.86
6429 6898 5.313712 TCTTACATTTTGGGACTGAGGAAC 58.686 41.667 0.00 0.00 0.00 3.62
6482 6951 1.550976 CAAGATATACTCCCTCCGGCC 59.449 57.143 0.00 0.00 0.00 6.13
6486 6955 5.071115 ACTTCAAGCAAGATATACTCCCTCC 59.929 44.000 0.00 0.00 35.82 4.30
6524 6997 2.354109 CTGTTTCGCAGCTAGAGTCA 57.646 50.000 0.00 0.00 38.52 3.41
6534 7007 3.271729 TGAAAAGTGGTACTGTTTCGCA 58.728 40.909 0.00 0.00 32.76 5.10
6535 7008 3.303791 CCTGAAAAGTGGTACTGTTTCGC 60.304 47.826 0.00 0.00 32.76 4.70
6536 7009 4.124238 TCCTGAAAAGTGGTACTGTTTCG 58.876 43.478 0.00 0.00 32.76 3.46
6537 7010 6.438763 CAATCCTGAAAAGTGGTACTGTTTC 58.561 40.000 0.00 0.00 31.78 2.78
6538 7011 5.301805 CCAATCCTGAAAAGTGGTACTGTTT 59.698 40.000 0.00 0.00 0.00 2.83
6542 7015 4.263506 CCTCCAATCCTGAAAAGTGGTACT 60.264 45.833 0.00 0.00 0.00 2.73
6543 7016 4.010349 CCTCCAATCCTGAAAAGTGGTAC 58.990 47.826 0.00 0.00 0.00 3.34
6544 7017 3.913799 TCCTCCAATCCTGAAAAGTGGTA 59.086 43.478 0.00 0.00 0.00 3.25
6545 7018 2.716424 TCCTCCAATCCTGAAAAGTGGT 59.284 45.455 0.00 0.00 0.00 4.16
6546 7019 3.084786 GTCCTCCAATCCTGAAAAGTGG 58.915 50.000 0.00 0.00 0.00 4.00
6562 7057 6.777213 TCTAACTTTACTCCTGATGTCCTC 57.223 41.667 0.00 0.00 0.00 3.71
6587 7082 9.787435 AGTAGTTAAAATTCACATCAACTGGTA 57.213 29.630 0.00 0.00 0.00 3.25
6614 7139 8.624776 CAACATTTTCTTCAGGAAACTAACTCT 58.375 33.333 0.00 0.00 42.80 3.24
6617 7142 6.978080 TGCAACATTTTCTTCAGGAAACTAAC 59.022 34.615 0.00 0.00 42.80 2.34
6618 7143 6.978080 GTGCAACATTTTCTTCAGGAAACTAA 59.022 34.615 0.00 0.00 39.19 2.24
6619 7144 6.460953 GGTGCAACATTTTCTTCAGGAAACTA 60.461 38.462 0.00 0.00 40.38 2.24
6670 7198 4.738652 TCCCTTGGTAGGTATAGTTCCCTA 59.261 45.833 0.00 0.00 40.19 3.53
6698 7226 2.036089 CCTAAATCACGAGGCTCTACCC 59.964 54.545 13.50 0.00 40.58 3.69
6699 7227 2.036089 CCCTAAATCACGAGGCTCTACC 59.964 54.545 13.50 0.00 39.61 3.18
6702 7230 1.757699 GTCCCTAAATCACGAGGCTCT 59.242 52.381 13.50 0.00 0.00 4.09
6703 7231 1.757699 AGTCCCTAAATCACGAGGCTC 59.242 52.381 3.87 3.87 0.00 4.70
6704 7232 1.867363 AGTCCCTAAATCACGAGGCT 58.133 50.000 0.00 0.00 0.00 4.58
6705 7233 2.223994 GGTAGTCCCTAAATCACGAGGC 60.224 54.545 0.00 0.00 0.00 4.70
6706 7234 3.028850 TGGTAGTCCCTAAATCACGAGG 58.971 50.000 0.00 0.00 0.00 4.63
6709 7237 3.446161 TGTCTGGTAGTCCCTAAATCACG 59.554 47.826 0.00 0.00 0.00 4.35
6712 7240 6.980416 ACTATGTCTGGTAGTCCCTAAATC 57.020 41.667 0.00 0.00 0.00 2.17
6713 7241 7.402071 TGAAACTATGTCTGGTAGTCCCTAAAT 59.598 37.037 0.00 0.00 31.44 1.40
6714 7242 6.727231 TGAAACTATGTCTGGTAGTCCCTAAA 59.273 38.462 0.00 0.00 31.44 1.85
6783 9076 4.846779 ACAAAACAAACACGCTGGATAT 57.153 36.364 0.00 0.00 0.00 1.63
6851 9146 4.102649 GCACAAAATAAATACCGAGTGCC 58.897 43.478 0.00 0.00 43.72 5.01
6865 9160 3.443329 TGTATTGCAGGATCGCACAAAAT 59.557 39.130 0.00 0.00 42.87 1.82
6870 9165 3.559655 TGTATTGTATTGCAGGATCGCAC 59.440 43.478 0.00 0.00 42.87 5.34
6871 9166 3.802866 TGTATTGTATTGCAGGATCGCA 58.197 40.909 0.00 0.00 41.03 5.10
6872 9167 4.811555 TTGTATTGTATTGCAGGATCGC 57.188 40.909 0.00 0.00 0.00 4.58
6873 9168 6.650807 AGGTATTGTATTGTATTGCAGGATCG 59.349 38.462 0.00 0.00 0.00 3.69
6874 9169 7.661437 TCAGGTATTGTATTGTATTGCAGGATC 59.339 37.037 0.00 0.00 0.00 3.36
6876 9171 6.894682 TCAGGTATTGTATTGTATTGCAGGA 58.105 36.000 0.00 0.00 0.00 3.86
6877 9172 7.566760 TTCAGGTATTGTATTGTATTGCAGG 57.433 36.000 0.00 0.00 0.00 4.85
6878 9173 9.507280 CTTTTCAGGTATTGTATTGTATTGCAG 57.493 33.333 0.00 0.00 0.00 4.41
6879 9174 7.973388 GCTTTTCAGGTATTGTATTGTATTGCA 59.027 33.333 0.00 0.00 0.00 4.08
6880 9175 8.190784 AGCTTTTCAGGTATTGTATTGTATTGC 58.809 33.333 0.00 0.00 0.00 3.56
6893 9188 9.185680 ACGGAAAATAATAAGCTTTTCAGGTAT 57.814 29.630 3.20 0.00 41.15 2.73
7018 9320 1.154197 GACGCTGGTAGGGTTTTGAC 58.846 55.000 0.00 0.00 41.76 3.18
7043 9345 3.524606 TAGGCCGTAGCGCTGGAC 61.525 66.667 22.90 16.89 41.24 4.02
7044 9346 3.524606 GTAGGCCGTAGCGCTGGA 61.525 66.667 22.90 0.00 41.24 3.86
7045 9347 4.925576 CGTAGGCCGTAGCGCTGG 62.926 72.222 22.90 15.49 41.24 4.85
7046 9348 4.925576 CCGTAGGCCGTAGCGCTG 62.926 72.222 22.90 4.11 46.14 5.18
7057 9359 1.227943 CATGACCATGCCCCGTAGG 60.228 63.158 0.00 0.00 38.82 3.18
7090 9392 1.569479 GGCTGACAAAGTCGTGCTCC 61.569 60.000 12.25 0.00 35.88 4.70
7117 9419 1.112113 TGGTGCCTAGAATCTCGTCC 58.888 55.000 0.00 0.00 0.00 4.79
7126 9428 1.221523 AGGGAGATGATGGTGCCTAGA 59.778 52.381 0.00 0.00 31.67 2.43
7294 9596 3.411351 CGGTTGACGTTGAGGCCG 61.411 66.667 0.00 0.00 37.93 6.13
7304 9606 3.423154 CTTGCGGAGGCGGTTGAC 61.423 66.667 0.00 0.00 44.10 3.18
7305 9607 3.589654 CTCTTGCGGAGGCGGTTGA 62.590 63.158 0.00 0.00 44.10 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.