Multiple sequence alignment - TraesCS3B01G286300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G286300 chr3B 100.000 5680 0 0 518 6197 457980832 457975153 0.000000e+00 10490.0
1 TraesCS3B01G286300 chr3B 100.000 59 0 0 1 59 457981349 457981291 6.570000e-20 110.0
2 TraesCS3B01G286300 chr3B 87.234 94 9 3 4271 4362 29781174 29781266 3.060000e-18 104.0
3 TraesCS3B01G286300 chr3B 85.106 94 11 3 4271 4362 30206564 30206656 6.610000e-15 93.5
4 TraesCS3B01G286300 chr3B 80.488 82 12 4 4246 4326 780694428 780694350 6.710000e-05 60.2
5 TraesCS3B01G286300 chr3D 95.674 3606 94 25 2622 6197 356851794 356848221 0.000000e+00 5738.0
6 TraesCS3B01G286300 chr3D 94.946 554 19 6 1286 1835 356853067 356852519 0.000000e+00 859.0
7 TraesCS3B01G286300 chr3D 95.168 476 11 6 2173 2636 356852384 356851909 0.000000e+00 741.0
8 TraesCS3B01G286300 chr3D 94.118 493 18 5 640 1131 356853845 356853363 0.000000e+00 739.0
9 TraesCS3B01G286300 chr3D 98.485 132 1 1 1994 2124 356852522 356852391 1.340000e-56 231.0
10 TraesCS3B01G286300 chr3D 97.619 42 1 0 5847 5888 356848619 356848578 8.620000e-09 73.1
11 TraesCS3B01G286300 chr3D 89.796 49 5 0 4260 4308 3218839 3218791 5.190000e-06 63.9
12 TraesCS3B01G286300 chr3A 97.512 1929 40 6 3645 5568 475734420 475732495 0.000000e+00 3290.0
13 TraesCS3B01G286300 chr3A 96.488 1623 31 9 1997 3596 475736021 475734402 0.000000e+00 2658.0
14 TraesCS3B01G286300 chr3A 93.825 664 31 5 1176 1833 475736682 475736023 0.000000e+00 990.0
15 TraesCS3B01G286300 chr3A 93.458 428 20 5 640 1066 475737357 475736937 4.080000e-176 628.0
16 TraesCS3B01G286300 chr3A 88.435 441 36 7 5615 6052 475727248 475726820 9.210000e-143 518.0
17 TraesCS3B01G286300 chr3A 84.431 167 10 5 6042 6197 475726275 475726114 3.870000e-32 150.0
18 TraesCS3B01G286300 chr3A 97.619 42 1 0 5847 5888 475727062 475727021 8.620000e-09 73.1
19 TraesCS3B01G286300 chrUn 94.819 193 7 2 1807 1997 337135346 337135537 1.310000e-76 298.0
20 TraesCS3B01G286300 chr7A 98.235 170 3 0 1834 2003 47626464 47626295 1.310000e-76 298.0
21 TraesCS3B01G286300 chr7A 94.872 39 2 0 4307 4345 628824862 628824900 1.870000e-05 62.1
22 TraesCS3B01G286300 chr5B 94.819 193 7 2 1807 1997 86133293 86133102 1.310000e-76 298.0
23 TraesCS3B01G286300 chr5B 100.000 28 0 0 4299 4326 426509419 426509446 1.100000e-02 52.8
24 TraesCS3B01G286300 chr5A 97.688 173 4 0 1834 2006 361454794 361454622 1.310000e-76 298.0
25 TraesCS3B01G286300 chr2B 98.246 171 1 2 1827 1997 51085330 51085498 1.310000e-76 298.0
26 TraesCS3B01G286300 chr1A 98.802 167 2 0 1834 2000 425168608 425168442 1.310000e-76 298.0
27 TraesCS3B01G286300 chr6B 97.159 176 4 1 1823 1998 48412066 48412240 4.700000e-76 296.0
28 TraesCS3B01G286300 chr6B 97.143 175 4 1 1830 2003 464866225 464866051 1.690000e-75 294.0
29 TraesCS3B01G286300 chr6B 80.189 106 18 3 4253 4356 212190143 212190039 6.660000e-10 76.8
30 TraesCS3B01G286300 chr4B 97.661 171 4 0 1834 2004 143898148 143897978 1.690000e-75 294.0
31 TraesCS3B01G286300 chr7D 82.692 104 18 0 4260 4363 21615980 21615877 6.610000e-15 93.5
32 TraesCS3B01G286300 chr7B 88.235 51 4 2 5464 5514 448364114 448364162 6.710000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G286300 chr3B 457975153 457981349 6196 True 5300.000000 10490 100.000000 1 6197 2 chr3B.!!$R2 6196
1 TraesCS3B01G286300 chr3D 356848221 356853845 5624 True 1396.850000 5738 96.001667 640 6197 6 chr3D.!!$R2 5557
2 TraesCS3B01G286300 chr3A 475732495 475737357 4862 True 1891.500000 3290 95.320750 640 5568 4 chr3A.!!$R2 4928
3 TraesCS3B01G286300 chr3A 475726114 475727248 1134 True 247.033333 518 90.161667 5615 6197 3 chr3A.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 615 0.031994 AAAAGGTTGCATCACACGGC 59.968 50.000 0.00 0.00 0.00 5.68 F
717 718 0.033642 GGCACCTAGATCTAACGGCC 59.966 60.000 17.48 17.48 0.00 6.13 F
1165 1167 0.106894 CGTAATGCCTCCTCCCCTTC 59.893 60.000 0.00 0.00 0.00 3.46 F
1173 1175 0.267356 CTCCTCCCCTTCCCATCTCT 59.733 60.000 0.00 0.00 0.00 3.10 F
2642 2813 0.307760 GTGTTTGTGCCTTCTGGTCG 59.692 55.000 0.00 0.00 35.27 4.79 F
3362 3662 1.949525 CTGCAGGCTGTTGTTACTTGT 59.050 47.619 17.16 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1526 1677 0.169672 CAAACTTCGCATGCAGAGGG 59.830 55.000 19.57 13.63 0.00 4.30 R
1527 1678 0.169672 CCAAACTTCGCATGCAGAGG 59.830 55.000 19.57 17.44 0.00 3.69 R
2999 3298 1.068127 GATCCATCAAAGGTGCCATGC 59.932 52.381 0.00 0.00 0.00 4.06 R
3076 3375 3.307906 CCCCGTCGTGTCTGGGAA 61.308 66.667 0.00 0.00 46.41 3.97 R
3716 4037 1.352083 ACTGCCCTGAAGCTGTCTTA 58.648 50.000 0.00 0.00 40.45 2.10 R
5224 5549 0.305313 GTTACCAAAGCACGCAACGA 59.695 50.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.506438 GTGAGTACGGTGAGCGGC 60.506 66.667 9.43 0.48 0.00 6.53
18 19 4.111016 TGAGTACGGTGAGCGGCG 62.111 66.667 9.43 0.51 0.00 6.46
19 20 4.849329 GAGTACGGTGAGCGGCGG 62.849 72.222 9.78 0.00 0.00 6.13
36 37 4.443266 GCGAGCTTCGAGGCCAGT 62.443 66.667 16.77 0.00 43.74 4.00
37 38 2.507992 CGAGCTTCGAGGCCAGTG 60.508 66.667 16.77 0.00 43.74 3.66
38 39 2.659610 GAGCTTCGAGGCCAGTGT 59.340 61.111 16.77 0.00 0.00 3.55
39 40 1.446966 GAGCTTCGAGGCCAGTGTC 60.447 63.158 16.77 2.77 0.00 3.67
40 41 1.882989 GAGCTTCGAGGCCAGTGTCT 61.883 60.000 16.77 0.00 0.00 3.41
41 42 1.446966 GCTTCGAGGCCAGTGTCTC 60.447 63.158 8.60 0.00 39.95 3.36
45 46 2.183046 GAGGCCAGTGTCTCGCTC 59.817 66.667 5.01 0.00 32.68 5.03
46 47 3.691744 GAGGCCAGTGTCTCGCTCG 62.692 68.421 5.01 0.00 32.68 5.03
47 48 4.057428 GGCCAGTGTCTCGCTCGT 62.057 66.667 0.00 0.00 0.00 4.18
48 49 2.505118 GCCAGTGTCTCGCTCGTC 60.505 66.667 0.00 0.00 0.00 4.20
49 50 2.179517 CCAGTGTCTCGCTCGTCC 59.820 66.667 0.00 0.00 0.00 4.79
50 51 2.626780 CCAGTGTCTCGCTCGTCCA 61.627 63.158 0.00 0.00 0.00 4.02
51 52 1.508545 CAGTGTCTCGCTCGTCCAT 59.491 57.895 0.00 0.00 0.00 3.41
52 53 0.799917 CAGTGTCTCGCTCGTCCATG 60.800 60.000 0.00 0.00 0.00 3.66
53 54 1.517257 GTGTCTCGCTCGTCCATGG 60.517 63.158 4.97 4.97 0.00 3.66
54 55 2.583593 GTCTCGCTCGTCCATGGC 60.584 66.667 6.96 0.96 0.00 4.40
538 539 3.241783 TGTGTTTTTGCATACGACGAC 57.758 42.857 0.00 0.00 0.00 4.34
539 540 2.219355 GTGTTTTTGCATACGACGACG 58.781 47.619 5.58 5.58 45.75 5.12
540 541 1.235695 GTTTTTGCATACGACGACGC 58.764 50.000 7.30 1.04 43.96 5.19
541 542 0.859882 TTTTTGCATACGACGACGCA 59.140 45.000 7.30 4.04 43.96 5.24
542 543 0.859882 TTTTGCATACGACGACGCAA 59.140 45.000 15.57 15.57 42.29 4.85
543 544 0.436913 TTTGCATACGACGACGCAAG 59.563 50.000 17.65 0.00 44.46 4.01
544 545 1.348538 TTGCATACGACGACGCAAGG 61.349 55.000 15.57 0.00 43.96 3.61
545 546 1.804326 GCATACGACGACGCAAGGT 60.804 57.895 7.30 0.00 43.96 3.50
546 547 1.988409 CATACGACGACGCAAGGTG 59.012 57.895 7.30 0.00 43.96 4.00
547 548 1.153901 ATACGACGACGCAAGGTGG 60.154 57.895 7.30 0.00 43.96 4.61
548 549 1.588824 ATACGACGACGCAAGGTGGA 61.589 55.000 7.30 0.00 43.96 4.02
549 550 1.794151 TACGACGACGCAAGGTGGAA 61.794 55.000 7.30 0.00 43.96 3.53
550 551 2.372690 CGACGACGCAAGGTGGAAG 61.373 63.158 0.00 0.00 46.39 3.46
551 552 1.006571 GACGACGCAAGGTGGAAGA 60.007 57.895 0.00 0.00 46.39 2.87
552 553 0.389948 GACGACGCAAGGTGGAAGAT 60.390 55.000 0.00 0.00 46.39 2.40
553 554 0.670546 ACGACGCAAGGTGGAAGATG 60.671 55.000 0.00 0.00 46.39 2.90
554 555 1.796796 GACGCAAGGTGGAAGATGC 59.203 57.895 0.00 0.00 46.39 3.91
556 557 2.486966 GCAAGGTGGAAGATGCGC 59.513 61.111 0.00 0.00 0.00 6.09
557 558 2.787249 CAAGGTGGAAGATGCGCG 59.213 61.111 0.00 0.00 0.00 6.86
558 559 2.436646 AAGGTGGAAGATGCGCGG 60.437 61.111 8.83 0.00 0.00 6.46
559 560 3.976701 AAGGTGGAAGATGCGCGGG 62.977 63.158 8.83 0.00 0.00 6.13
560 561 4.467084 GGTGGAAGATGCGCGGGA 62.467 66.667 8.83 0.00 0.00 5.14
561 562 2.203070 GTGGAAGATGCGCGGGAT 60.203 61.111 8.83 0.00 0.00 3.85
562 563 2.203056 TGGAAGATGCGCGGGATG 60.203 61.111 8.83 0.00 0.00 3.51
563 564 2.108976 GGAAGATGCGCGGGATGA 59.891 61.111 8.83 0.00 0.00 2.92
564 565 1.523711 GGAAGATGCGCGGGATGAA 60.524 57.895 8.83 0.00 0.00 2.57
565 566 1.502163 GGAAGATGCGCGGGATGAAG 61.502 60.000 8.83 0.00 0.00 3.02
566 567 0.530650 GAAGATGCGCGGGATGAAGA 60.531 55.000 8.83 0.00 0.00 2.87
567 568 0.107703 AAGATGCGCGGGATGAAGAA 60.108 50.000 8.83 0.00 0.00 2.52
568 569 0.531532 AGATGCGCGGGATGAAGAAG 60.532 55.000 8.83 0.00 0.00 2.85
569 570 0.530650 GATGCGCGGGATGAAGAAGA 60.531 55.000 8.83 0.00 0.00 2.87
570 571 0.107703 ATGCGCGGGATGAAGAAGAA 60.108 50.000 8.83 0.00 0.00 2.52
571 572 0.107703 TGCGCGGGATGAAGAAGAAT 60.108 50.000 8.83 0.00 0.00 2.40
572 573 0.305922 GCGCGGGATGAAGAAGAATG 59.694 55.000 8.83 0.00 0.00 2.67
573 574 0.940126 CGCGGGATGAAGAAGAATGG 59.060 55.000 0.00 0.00 0.00 3.16
574 575 1.312815 GCGGGATGAAGAAGAATGGG 58.687 55.000 0.00 0.00 0.00 4.00
575 576 1.134098 GCGGGATGAAGAAGAATGGGA 60.134 52.381 0.00 0.00 0.00 4.37
576 577 2.683742 GCGGGATGAAGAAGAATGGGAA 60.684 50.000 0.00 0.00 0.00 3.97
577 578 3.209410 CGGGATGAAGAAGAATGGGAAG 58.791 50.000 0.00 0.00 0.00 3.46
578 579 2.954989 GGGATGAAGAAGAATGGGAAGC 59.045 50.000 0.00 0.00 0.00 3.86
579 580 2.954989 GGATGAAGAAGAATGGGAAGCC 59.045 50.000 0.00 0.00 0.00 4.35
580 581 3.372458 GGATGAAGAAGAATGGGAAGCCT 60.372 47.826 0.00 0.00 0.00 4.58
581 582 3.077484 TGAAGAAGAATGGGAAGCCTG 57.923 47.619 0.00 0.00 0.00 4.85
582 583 2.644299 TGAAGAAGAATGGGAAGCCTGA 59.356 45.455 0.00 0.00 0.00 3.86
583 584 3.267812 TGAAGAAGAATGGGAAGCCTGAT 59.732 43.478 0.00 0.00 0.00 2.90
584 585 3.574354 AGAAGAATGGGAAGCCTGATC 57.426 47.619 0.00 0.00 0.00 2.92
585 586 2.158842 AGAAGAATGGGAAGCCTGATCG 60.159 50.000 0.00 0.00 0.00 3.69
586 587 0.471617 AGAATGGGAAGCCTGATCGG 59.528 55.000 0.00 0.00 0.00 4.18
587 588 0.469917 GAATGGGAAGCCTGATCGGA 59.530 55.000 2.08 0.00 33.16 4.55
588 589 0.181350 AATGGGAAGCCTGATCGGAC 59.819 55.000 2.08 0.00 33.16 4.79
589 590 2.032860 ATGGGAAGCCTGATCGGACG 62.033 60.000 2.08 0.00 33.16 4.79
590 591 2.107141 GGAAGCCTGATCGGACGG 59.893 66.667 2.08 0.00 33.16 4.79
591 592 2.586357 GAAGCCTGATCGGACGGC 60.586 66.667 2.08 5.08 44.09 5.68
594 595 3.838271 GCCTGATCGGACGGCTGA 61.838 66.667 0.00 0.00 40.62 4.26
595 596 2.892640 CCTGATCGGACGGCTGAA 59.107 61.111 2.50 0.00 32.06 3.02
596 597 1.218047 CCTGATCGGACGGCTGAAA 59.782 57.895 2.50 0.00 32.06 2.69
597 598 0.391130 CCTGATCGGACGGCTGAAAA 60.391 55.000 2.50 0.00 32.06 2.29
598 599 1.438651 CTGATCGGACGGCTGAAAAA 58.561 50.000 2.50 0.00 32.06 1.94
599 600 1.394917 CTGATCGGACGGCTGAAAAAG 59.605 52.381 2.50 0.00 32.06 2.27
600 601 0.727398 GATCGGACGGCTGAAAAAGG 59.273 55.000 2.50 0.00 32.06 3.11
601 602 0.036306 ATCGGACGGCTGAAAAAGGT 59.964 50.000 2.50 0.00 32.06 3.50
602 603 0.179040 TCGGACGGCTGAAAAAGGTT 60.179 50.000 0.00 0.00 0.00 3.50
603 604 0.040425 CGGACGGCTGAAAAAGGTTG 60.040 55.000 0.00 0.00 0.00 3.77
604 605 0.318699 GGACGGCTGAAAAAGGTTGC 60.319 55.000 0.00 0.00 0.00 4.17
605 606 0.383949 GACGGCTGAAAAAGGTTGCA 59.616 50.000 0.00 0.00 0.00 4.08
606 607 1.000274 GACGGCTGAAAAAGGTTGCAT 60.000 47.619 0.00 0.00 0.00 3.96
607 608 1.000274 ACGGCTGAAAAAGGTTGCATC 60.000 47.619 0.00 0.00 0.00 3.91
608 609 1.000385 CGGCTGAAAAAGGTTGCATCA 60.000 47.619 0.00 0.00 0.00 3.07
609 610 2.407090 GGCTGAAAAAGGTTGCATCAC 58.593 47.619 0.00 0.00 0.00 3.06
610 611 2.224018 GGCTGAAAAAGGTTGCATCACA 60.224 45.455 0.00 0.00 0.00 3.58
611 612 2.796593 GCTGAAAAAGGTTGCATCACAC 59.203 45.455 0.00 0.00 0.00 3.82
612 613 3.044986 CTGAAAAAGGTTGCATCACACG 58.955 45.455 0.00 0.00 0.00 4.49
613 614 2.223688 TGAAAAAGGTTGCATCACACGG 60.224 45.455 0.00 0.00 0.00 4.94
614 615 0.031994 AAAAGGTTGCATCACACGGC 59.968 50.000 0.00 0.00 0.00 5.68
615 616 0.823356 AAAGGTTGCATCACACGGCT 60.823 50.000 0.00 0.00 0.00 5.52
616 617 1.518056 AAGGTTGCATCACACGGCTG 61.518 55.000 0.00 0.00 0.00 4.85
617 618 2.562912 GTTGCATCACACGGCTGG 59.437 61.111 0.00 0.00 0.00 4.85
618 619 2.672651 TTGCATCACACGGCTGGG 60.673 61.111 0.00 0.00 0.00 4.45
621 622 3.129502 CATCACACGGCTGGGCAG 61.130 66.667 0.00 0.00 0.00 4.85
622 623 4.415150 ATCACACGGCTGGGCAGG 62.415 66.667 0.00 0.00 0.00 4.85
635 636 4.752879 GCAGGCAACCGGCGACTA 62.753 66.667 9.30 0.00 46.16 2.59
636 637 2.509336 CAGGCAACCGGCGACTAG 60.509 66.667 9.30 0.00 46.16 2.57
637 638 2.995574 AGGCAACCGGCGACTAGT 60.996 61.111 9.30 0.00 46.16 2.57
638 639 1.679977 AGGCAACCGGCGACTAGTA 60.680 57.895 9.30 0.00 46.16 1.82
639 640 1.226888 GGCAACCGGCGACTAGTAG 60.227 63.158 9.30 0.00 46.16 2.57
640 641 1.509923 GCAACCGGCGACTAGTAGT 59.490 57.895 9.30 1.37 0.00 2.73
641 642 0.525029 GCAACCGGCGACTAGTAGTC 60.525 60.000 18.77 18.77 41.71 2.59
682 683 2.093973 AGGAAAGCGATGATCGTTGACT 60.094 45.455 16.83 6.92 42.81 3.41
717 718 0.033642 GGCACCTAGATCTAACGGCC 59.966 60.000 17.48 17.48 0.00 6.13
851 853 2.095161 CCTTAAATAAAACGCGTGCCCA 60.095 45.455 14.98 0.00 0.00 5.36
922 924 0.310543 CTCGCTTCTCCTCATCCTCG 59.689 60.000 0.00 0.00 0.00 4.63
1136 1138 2.202362 CGACGAGTCGCTCCAGTG 60.202 66.667 13.59 0.00 46.50 3.66
1137 1139 2.179517 GACGAGTCGCTCCAGTGG 59.820 66.667 13.59 1.40 0.00 4.00
1138 1140 2.282251 ACGAGTCGCTCCAGTGGA 60.282 61.111 13.59 12.40 0.00 4.02
1139 1141 1.658686 GACGAGTCGCTCCAGTGGAT 61.659 60.000 13.56 0.00 0.00 3.41
1140 1142 1.064946 CGAGTCGCTCCAGTGGATC 59.935 63.158 13.56 7.77 0.00 3.36
1141 1143 1.064946 GAGTCGCTCCAGTGGATCG 59.935 63.158 25.85 25.85 41.88 3.69
1142 1144 1.377366 GAGTCGCTCCAGTGGATCGA 61.377 60.000 29.25 29.25 45.95 3.59
1143 1145 3.197614 TCGCTCCAGTGGATCGAC 58.802 61.111 29.25 11.78 43.82 4.20
1144 1146 2.105128 CGCTCCAGTGGATCGACC 59.895 66.667 27.33 6.69 42.97 4.79
1145 1147 2.105128 GCTCCAGTGGATCGACCG 59.895 66.667 13.56 0.30 42.61 4.79
1151 1153 4.724022 GTGGATCGACCGCGTAAT 57.276 55.556 4.92 0.00 42.61 1.89
1152 1154 2.213483 GTGGATCGACCGCGTAATG 58.787 57.895 4.92 0.00 42.61 1.90
1153 1155 1.590525 TGGATCGACCGCGTAATGC 60.591 57.895 4.92 0.00 42.61 3.56
1154 1156 2.308039 GGATCGACCGCGTAATGCC 61.308 63.158 4.92 0.00 42.08 4.40
1155 1157 1.299926 GATCGACCGCGTAATGCCT 60.300 57.895 4.92 0.00 42.08 4.75
1156 1158 1.276145 GATCGACCGCGTAATGCCTC 61.276 60.000 4.92 0.00 42.08 4.70
1157 1159 2.694829 ATCGACCGCGTAATGCCTCC 62.695 60.000 4.92 0.00 42.08 4.30
1158 1160 2.499685 GACCGCGTAATGCCTCCT 59.500 61.111 4.92 0.00 42.08 3.69
1159 1161 1.591863 GACCGCGTAATGCCTCCTC 60.592 63.158 4.92 0.00 42.08 3.71
1160 1162 2.280186 CCGCGTAATGCCTCCTCC 60.280 66.667 4.92 0.00 42.08 4.30
1161 1163 2.280186 CGCGTAATGCCTCCTCCC 60.280 66.667 0.00 0.00 42.08 4.30
1162 1164 2.111251 GCGTAATGCCTCCTCCCC 59.889 66.667 0.00 0.00 37.76 4.81
1163 1165 2.444256 GCGTAATGCCTCCTCCCCT 61.444 63.158 0.00 0.00 37.76 4.79
1164 1166 1.984288 GCGTAATGCCTCCTCCCCTT 61.984 60.000 0.00 0.00 37.76 3.95
1165 1167 0.106894 CGTAATGCCTCCTCCCCTTC 59.893 60.000 0.00 0.00 0.00 3.46
1166 1168 0.474614 GTAATGCCTCCTCCCCTTCC 59.525 60.000 0.00 0.00 0.00 3.46
1167 1169 0.697854 TAATGCCTCCTCCCCTTCCC 60.698 60.000 0.00 0.00 0.00 3.97
1168 1170 2.805827 AATGCCTCCTCCCCTTCCCA 62.806 60.000 0.00 0.00 0.00 4.37
1169 1171 2.368878 GCCTCCTCCCCTTCCCAT 60.369 66.667 0.00 0.00 0.00 4.00
1170 1172 2.456443 GCCTCCTCCCCTTCCCATC 61.456 68.421 0.00 0.00 0.00 3.51
1171 1173 1.319799 CCTCCTCCCCTTCCCATCT 59.680 63.158 0.00 0.00 0.00 2.90
1172 1174 0.766288 CCTCCTCCCCTTCCCATCTC 60.766 65.000 0.00 0.00 0.00 2.75
1173 1175 0.267356 CTCCTCCCCTTCCCATCTCT 59.733 60.000 0.00 0.00 0.00 3.10
1174 1176 1.505538 CTCCTCCCCTTCCCATCTCTA 59.494 57.143 0.00 0.00 0.00 2.43
1192 1339 0.320421 TATATTTCTGGGAGCGCGGC 60.320 55.000 8.83 0.00 0.00 6.53
1220 1367 5.656416 TGGTTTGATCTGGTTTTGAGTCTTT 59.344 36.000 0.00 0.00 0.00 2.52
1221 1368 5.979517 GGTTTGATCTGGTTTTGAGTCTTTG 59.020 40.000 0.00 0.00 0.00 2.77
1236 1383 2.360439 CTTTGACCGGGTTTGGGGGA 62.360 60.000 6.32 0.00 0.00 4.81
1270 1418 4.536765 GGGTCTTTGGGTGATTGTGATAT 58.463 43.478 0.00 0.00 0.00 1.63
1292 1440 0.402504 TTGGTGACTGGCCGGTAAAT 59.597 50.000 19.73 0.00 0.00 1.40
1368 1519 0.937441 AGGGGACATGAGAGGCTCTA 59.063 55.000 18.75 6.58 0.00 2.43
1426 1577 9.988350 ATAAACAACGAACTCTTATTTATGCAG 57.012 29.630 0.00 0.00 0.00 4.41
1498 1649 0.542333 TTCCGGTTCCTGTGACACAA 59.458 50.000 10.02 0.00 0.00 3.33
1529 1680 3.424640 TCCAAGAAGGATCTGCCCT 57.575 52.632 0.00 0.00 43.07 5.19
1530 1681 1.207791 TCCAAGAAGGATCTGCCCTC 58.792 55.000 0.00 0.00 43.07 4.30
1533 1684 0.545646 AAGAAGGATCTGCCCTCTGC 59.454 55.000 0.00 0.00 35.59 4.26
1542 1693 2.437359 GCCCTCTGCATGCGAAGT 60.437 61.111 14.09 0.00 40.77 3.01
1543 1694 2.042831 GCCCTCTGCATGCGAAGTT 61.043 57.895 14.09 0.00 40.77 2.66
1838 1992 8.807118 TGTAGATATTGGAATCATCAGTACTCC 58.193 37.037 0.00 0.00 0.00 3.85
1839 1993 7.251321 AGATATTGGAATCATCAGTACTCCC 57.749 40.000 0.00 0.00 0.00 4.30
1840 1994 7.021873 AGATATTGGAATCATCAGTACTCCCT 58.978 38.462 0.00 0.00 0.00 4.20
1841 1995 5.559148 ATTGGAATCATCAGTACTCCCTC 57.441 43.478 0.00 0.00 0.00 4.30
1842 1996 3.309296 TGGAATCATCAGTACTCCCTCC 58.691 50.000 0.00 0.00 0.00 4.30
1843 1997 2.297597 GGAATCATCAGTACTCCCTCCG 59.702 54.545 0.00 0.00 0.00 4.63
1844 1998 2.757894 ATCATCAGTACTCCCTCCGT 57.242 50.000 0.00 0.00 0.00 4.69
1845 1999 2.526888 TCATCAGTACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
1846 2000 2.376109 TCATCAGTACTCCCTCCGTTC 58.624 52.381 0.00 0.00 0.00 3.95
1847 2001 1.409427 CATCAGTACTCCCTCCGTTCC 59.591 57.143 0.00 0.00 0.00 3.62
1848 2002 0.702902 TCAGTACTCCCTCCGTTCCT 59.297 55.000 0.00 0.00 0.00 3.36
1849 2003 1.918262 TCAGTACTCCCTCCGTTCCTA 59.082 52.381 0.00 0.00 0.00 2.94
1850 2004 2.309755 TCAGTACTCCCTCCGTTCCTAA 59.690 50.000 0.00 0.00 0.00 2.69
1851 2005 3.094572 CAGTACTCCCTCCGTTCCTAAA 58.905 50.000 0.00 0.00 0.00 1.85
1852 2006 3.705072 CAGTACTCCCTCCGTTCCTAAAT 59.295 47.826 0.00 0.00 0.00 1.40
1853 2007 4.891756 CAGTACTCCCTCCGTTCCTAAATA 59.108 45.833 0.00 0.00 0.00 1.40
1854 2008 4.892345 AGTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
1855 2009 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
1856 2010 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
1857 2011 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
1858 2012 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
1859 2013 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
1860 2014 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
1861 2015 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1862 2016 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1863 2017 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
1864 2018 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
1865 2019 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
1866 2020 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
1867 2021 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
1868 2022 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
1869 2023 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
1870 2024 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
1871 2025 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
1872 2026 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
1874 2028 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
1875 2029 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
1876 2030 8.814038 ATACTTGTCTTTCTAGGCATTTCAAT 57.186 30.769 0.00 0.00 35.56 2.57
1877 2031 9.905713 ATACTTGTCTTTCTAGGCATTTCAATA 57.094 29.630 0.00 0.00 35.56 1.90
1878 2032 8.635765 ACTTGTCTTTCTAGGCATTTCAATAA 57.364 30.769 0.00 0.00 35.56 1.40
1879 2033 8.734386 ACTTGTCTTTCTAGGCATTTCAATAAG 58.266 33.333 0.00 0.00 35.56 1.73
1880 2034 8.635765 TTGTCTTTCTAGGCATTTCAATAAGT 57.364 30.769 0.00 0.00 35.56 2.24
1881 2035 8.044060 TGTCTTTCTAGGCATTTCAATAAGTG 57.956 34.615 0.00 0.00 29.10 3.16
1882 2036 7.882791 TGTCTTTCTAGGCATTTCAATAAGTGA 59.117 33.333 0.00 0.00 29.10 3.41
1883 2037 8.178313 GTCTTTCTAGGCATTTCAATAAGTGAC 58.822 37.037 0.00 0.00 35.39 3.67
1884 2038 8.103305 TCTTTCTAGGCATTTCAATAAGTGACT 58.897 33.333 0.00 0.00 42.81 3.41
1885 2039 9.383519 CTTTCTAGGCATTTCAATAAGTGACTA 57.616 33.333 0.00 0.00 38.81 2.59
1886 2040 9.905713 TTTCTAGGCATTTCAATAAGTGACTAT 57.094 29.630 0.00 0.00 40.86 2.12
1891 2045 9.424319 AGGCATTTCAATAAGTGACTATATACG 57.576 33.333 0.00 0.00 38.81 3.06
1892 2046 8.656849 GGCATTTCAATAAGTGACTATATACGG 58.343 37.037 0.00 0.00 35.39 4.02
1893 2047 9.419297 GCATTTCAATAAGTGACTATATACGGA 57.581 33.333 0.00 0.00 35.39 4.69
1895 2049 9.640963 ATTTCAATAAGTGACTATATACGGAGC 57.359 33.333 0.00 0.00 35.39 4.70
1896 2050 7.754851 TCAATAAGTGACTATATACGGAGCA 57.245 36.000 0.00 0.00 0.00 4.26
1897 2051 8.173542 TCAATAAGTGACTATATACGGAGCAA 57.826 34.615 0.00 0.00 0.00 3.91
1898 2052 8.635328 TCAATAAGTGACTATATACGGAGCAAA 58.365 33.333 0.00 0.00 0.00 3.68
1899 2053 9.256477 CAATAAGTGACTATATACGGAGCAAAA 57.744 33.333 0.00 0.00 0.00 2.44
1900 2054 9.998106 AATAAGTGACTATATACGGAGCAAAAT 57.002 29.630 0.00 0.00 0.00 1.82
1901 2055 7.715265 AAGTGACTATATACGGAGCAAAATG 57.285 36.000 0.00 0.00 0.00 2.32
1902 2056 7.050970 AGTGACTATATACGGAGCAAAATGA 57.949 36.000 0.00 0.00 0.00 2.57
1903 2057 7.148641 AGTGACTATATACGGAGCAAAATGAG 58.851 38.462 0.00 0.00 0.00 2.90
1904 2058 6.924060 GTGACTATATACGGAGCAAAATGAGT 59.076 38.462 0.00 0.00 0.00 3.41
1905 2059 6.923508 TGACTATATACGGAGCAAAATGAGTG 59.076 38.462 0.00 0.00 0.00 3.51
1906 2060 7.050970 ACTATATACGGAGCAAAATGAGTGA 57.949 36.000 0.00 0.00 0.00 3.41
1907 2061 7.497595 ACTATATACGGAGCAAAATGAGTGAA 58.502 34.615 0.00 0.00 0.00 3.18
1908 2062 8.150945 ACTATATACGGAGCAAAATGAGTGAAT 58.849 33.333 0.00 0.00 0.00 2.57
1909 2063 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
1910 2064 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1911 2065 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1912 2066 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1913 2067 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1914 2068 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1957 2111 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
1958 2112 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
1959 2113 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
1960 2114 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
1961 2115 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
1962 2116 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
1963 2117 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
1964 2118 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
1988 2142 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
1989 2143 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
1990 2144 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
1991 2145 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
1992 2146 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1993 2147 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1994 2148 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2122 2280 2.726832 AACGAACTCCTGAGCACTAC 57.273 50.000 0.00 0.00 0.00 2.73
2407 2578 2.799126 TTCCATGGTTAGACGGCAAT 57.201 45.000 12.58 0.00 0.00 3.56
2424 2595 4.923871 CGGCAATAGTATGTATGTCACCTC 59.076 45.833 0.00 0.00 0.00 3.85
2447 2618 1.719780 GAAAAGTAGAGGCGTCACACG 59.280 52.381 9.41 0.00 45.88 4.49
2451 2622 1.881973 AGTAGAGGCGTCACACGTTTA 59.118 47.619 9.41 0.00 44.73 2.01
2642 2813 0.307760 GTGTTTGTGCCTTCTGGTCG 59.692 55.000 0.00 0.00 35.27 4.79
2752 3051 8.700722 TTGATGATTTAACAATTATGTGTGCC 57.299 30.769 0.00 0.00 40.46 5.01
2964 3263 2.910688 TCTTCTCGTTGCTTTGGAGT 57.089 45.000 0.00 0.00 0.00 3.85
3159 3458 7.095910 AGCATTCGTCCTTTCTATATCATCTG 58.904 38.462 0.00 0.00 0.00 2.90
3215 3515 7.514721 TGTATCAAGGTTTTACTTCTGAAGGT 58.485 34.615 20.61 9.44 0.00 3.50
3289 3589 5.969423 ACAACCTAATTTCATGCTTCATGG 58.031 37.500 6.92 0.00 41.66 3.66
3362 3662 1.949525 CTGCAGGCTGTTGTTACTTGT 59.050 47.619 17.16 0.00 0.00 3.16
3464 3764 4.352893 AGGTTGGCCTTATTGCTGTAAAT 58.647 39.130 3.32 0.00 44.18 1.40
3946 4269 8.338259 GCATTATGTCTTTAGTACTGTTGATGG 58.662 37.037 5.39 0.00 0.00 3.51
4286 4609 4.041198 CCCTCCGCCCTAAAATAAGTATCA 59.959 45.833 0.00 0.00 0.00 2.15
4485 4810 6.620877 ACTTGAATGGGTAGAACTATCACA 57.379 37.500 0.00 0.00 0.00 3.58
4737 5062 6.183347 ACAGGAAAATTATGGGAAGTCAGAG 58.817 40.000 0.00 0.00 0.00 3.35
4933 5258 7.765360 CCTGATTATAACAAAACCCTACACGTA 59.235 37.037 0.00 0.00 0.00 3.57
4956 5281 1.962807 TGGTGCTCATTTGGTTGAAGG 59.037 47.619 0.00 0.00 0.00 3.46
4996 5321 5.220854 CCAAACAGAGGCATAATCGTTTAGG 60.221 44.000 0.00 0.00 0.00 2.69
5014 5339 1.436195 GGCACGCAGAAACTGACACA 61.436 55.000 2.81 0.00 32.44 3.72
5193 5518 5.105146 GGAGAAGATCTACAAGAGGCAGAAA 60.105 44.000 0.00 0.00 0.00 2.52
5224 5549 2.746472 GCTCTTGGAGAGGTTGTTGTGT 60.746 50.000 7.05 0.00 42.54 3.72
5375 5700 7.176515 TGTGTCATAACCATGTTATTTGAAGCT 59.823 33.333 0.00 0.00 33.57 3.74
5376 5701 7.698130 GTGTCATAACCATGTTATTTGAAGCTC 59.302 37.037 0.00 0.00 33.57 4.09
5411 5738 8.806429 TTTCTAGCCTATCATTTGTCATCAAA 57.194 30.769 0.00 0.00 45.71 2.69
5515 5851 2.926242 ACCGGGTTGGATGGTCGT 60.926 61.111 6.32 0.00 42.00 4.34
5569 5905 3.326109 GGACGTTTGGTGTGTCCG 58.674 61.111 0.00 0.00 42.42 4.79
5570 5906 1.522130 GGACGTTTGGTGTGTCCGT 60.522 57.895 0.00 0.00 42.42 4.69
5571 5907 1.639534 GACGTTTGGTGTGTCCGTG 59.360 57.895 0.00 0.00 39.52 4.94
5572 5908 1.078988 ACGTTTGGTGTGTCCGTGT 60.079 52.632 0.00 0.00 39.52 4.49
5573 5909 1.085501 ACGTTTGGTGTGTCCGTGTC 61.086 55.000 0.00 0.00 39.52 3.67
5574 5910 1.768112 CGTTTGGTGTGTCCGTGTCC 61.768 60.000 0.00 0.00 39.52 4.02
5575 5911 1.521906 TTTGGTGTGTCCGTGTCCG 60.522 57.895 0.00 0.00 39.52 4.79
5576 5912 2.241479 TTTGGTGTGTCCGTGTCCGT 62.241 55.000 0.00 0.00 39.52 4.69
5577 5913 2.660552 GGTGTGTCCGTGTCCGTG 60.661 66.667 0.00 0.00 0.00 4.94
5578 5914 2.660552 GTGTGTCCGTGTCCGTGG 60.661 66.667 0.00 0.00 0.00 4.94
5579 5915 2.834043 TGTGTCCGTGTCCGTGGA 60.834 61.111 0.00 0.00 0.00 4.02
5580 5916 2.204461 TGTGTCCGTGTCCGTGGAT 61.204 57.895 0.00 0.00 36.48 3.41
5581 5917 1.736645 GTGTCCGTGTCCGTGGATG 60.737 63.158 0.00 0.00 36.48 3.51
5582 5918 2.204461 TGTCCGTGTCCGTGGATGT 61.204 57.895 0.00 0.00 36.48 3.06
5583 5919 1.005394 GTCCGTGTCCGTGGATGTT 60.005 57.895 0.00 0.00 36.48 2.71
5584 5920 0.601841 GTCCGTGTCCGTGGATGTTT 60.602 55.000 0.00 0.00 36.48 2.83
5585 5921 0.601576 TCCGTGTCCGTGGATGTTTG 60.602 55.000 0.00 0.00 0.00 2.93
5586 5922 1.573829 CCGTGTCCGTGGATGTTTGG 61.574 60.000 0.00 0.00 0.00 3.28
5587 5923 0.882927 CGTGTCCGTGGATGTTTGGT 60.883 55.000 0.00 0.00 0.00 3.67
5588 5924 0.591170 GTGTCCGTGGATGTTTGGTG 59.409 55.000 0.00 0.00 0.00 4.17
5589 5925 0.181587 TGTCCGTGGATGTTTGGTGT 59.818 50.000 0.00 0.00 0.00 4.16
5590 5926 0.591170 GTCCGTGGATGTTTGGTGTG 59.409 55.000 0.00 0.00 0.00 3.82
5591 5927 0.181587 TCCGTGGATGTTTGGTGTGT 59.818 50.000 0.00 0.00 0.00 3.72
5592 5928 0.591170 CCGTGGATGTTTGGTGTGTC 59.409 55.000 0.00 0.00 0.00 3.67
5599 5935 5.920273 GTGGATGTTTGGTGTGTCTATTTTG 59.080 40.000 0.00 0.00 0.00 2.44
5608 5944 5.636121 TGGTGTGTCTATTTTGATGTACGAC 59.364 40.000 0.00 0.00 0.00 4.34
5615 5951 6.089820 GTCTATTTTGATGTACGACGTTGGAA 59.910 38.462 5.50 0.00 0.00 3.53
5639 5975 1.073722 CTTGCAGCTGTGGAAGGGA 59.926 57.895 16.64 0.00 45.81 4.20
5645 5981 0.768221 AGCTGTGGAAGGGAGGACAA 60.768 55.000 0.00 0.00 0.00 3.18
5681 6024 6.991938 AGCATCTCTCTAACATACTCCATTC 58.008 40.000 0.00 0.00 0.00 2.67
5682 6025 6.782000 AGCATCTCTCTAACATACTCCATTCT 59.218 38.462 0.00 0.00 0.00 2.40
5700 6043 7.765307 TCCATTCTTAGTGATGAATTTTGCTC 58.235 34.615 0.00 0.00 31.35 4.26
5753 6096 4.675671 CGTGCCCAAGAAACTGTTGTTTAA 60.676 41.667 0.00 0.00 45.36 1.52
5761 6104 6.220726 AGAAACTGTTGTTTAAGGCATTGT 57.779 33.333 0.00 0.00 45.36 2.71
5773 6116 4.525912 AAGGCATTGTCCAAAGAATGTC 57.474 40.909 0.00 0.00 40.18 3.06
5786 6129 0.840729 GAATGTCGTCGTGATCTCGC 59.159 55.000 12.18 6.87 0.00 5.03
5814 6157 2.925966 TTGCATCCCAGGATTTCCTT 57.074 45.000 0.00 0.00 46.09 3.36
5844 6187 0.838987 TTGGCTCCCCGTAGAAACCT 60.839 55.000 0.00 0.00 0.00 3.50
5913 6256 4.095483 GGTGAATCTACAGAGTTTGCCATG 59.905 45.833 0.00 0.00 0.00 3.66
6120 7030 0.409092 AACCAATGCTGGGTCATGGA 59.591 50.000 0.00 0.00 38.87 3.41
6179 7089 1.742761 ATCGCAATCCTGGACAGTTG 58.257 50.000 0.00 0.83 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.849329 CCGCCGCTCACCGTACTC 62.849 72.222 0.00 0.00 34.38 2.59
19 20 4.443266 ACTGGCCTCGAAGCTCGC 62.443 66.667 3.32 0.00 40.21 5.03
20 21 2.507992 CACTGGCCTCGAAGCTCG 60.508 66.667 3.32 0.00 42.10 5.03
21 22 1.446966 GACACTGGCCTCGAAGCTC 60.447 63.158 3.32 0.00 0.00 4.09
22 23 1.882989 GAGACACTGGCCTCGAAGCT 61.883 60.000 3.32 0.00 0.00 3.74
23 24 1.446966 GAGACACTGGCCTCGAAGC 60.447 63.158 3.32 0.00 0.00 3.86
24 25 4.900154 GAGACACTGGCCTCGAAG 57.100 61.111 3.32 0.00 0.00 3.79
28 29 2.183046 GAGCGAGACACTGGCCTC 59.817 66.667 3.32 0.00 35.84 4.70
29 30 3.753434 CGAGCGAGACACTGGCCT 61.753 66.667 3.32 0.00 35.84 5.19
30 31 3.973267 GACGAGCGAGACACTGGCC 62.973 68.421 0.00 0.00 35.84 5.36
31 32 2.505118 GACGAGCGAGACACTGGC 60.505 66.667 0.00 0.00 35.46 4.85
32 33 1.938657 ATGGACGAGCGAGACACTGG 61.939 60.000 0.00 0.00 0.00 4.00
33 34 0.799917 CATGGACGAGCGAGACACTG 60.800 60.000 0.00 0.00 0.00 3.66
34 35 1.508545 CATGGACGAGCGAGACACT 59.491 57.895 0.00 0.00 0.00 3.55
35 36 1.517257 CCATGGACGAGCGAGACAC 60.517 63.158 5.56 0.00 0.00 3.67
36 37 2.885113 CCATGGACGAGCGAGACA 59.115 61.111 5.56 0.00 0.00 3.41
37 38 2.583593 GCCATGGACGAGCGAGAC 60.584 66.667 18.40 0.00 0.00 3.36
517 518 3.663233 CGTCGTCGTATGCAAAAACACAT 60.663 43.478 0.00 0.00 0.00 3.21
518 519 2.347753 CGTCGTCGTATGCAAAAACACA 60.348 45.455 0.00 0.00 0.00 3.72
519 520 2.219355 CGTCGTCGTATGCAAAAACAC 58.781 47.619 0.00 0.00 0.00 3.32
520 521 1.397441 GCGTCGTCGTATGCAAAAACA 60.397 47.619 3.66 0.00 39.49 2.83
521 522 1.235695 GCGTCGTCGTATGCAAAAAC 58.764 50.000 3.66 0.00 39.49 2.43
522 523 0.859882 TGCGTCGTCGTATGCAAAAA 59.140 45.000 3.66 0.00 38.41 1.94
523 524 0.859882 TTGCGTCGTCGTATGCAAAA 59.140 45.000 16.63 2.26 45.78 2.44
524 525 2.518711 TTGCGTCGTCGTATGCAAA 58.481 47.368 16.63 6.06 45.78 3.68
525 526 1.348538 CCTTGCGTCGTCGTATGCAA 61.349 55.000 17.42 17.42 46.39 4.08
526 527 1.803922 CCTTGCGTCGTCGTATGCA 60.804 57.895 3.66 7.27 39.58 3.96
527 528 1.804326 ACCTTGCGTCGTCGTATGC 60.804 57.895 3.66 0.00 39.49 3.14
528 529 1.410737 CCACCTTGCGTCGTCGTATG 61.411 60.000 3.66 1.62 39.49 2.39
529 530 1.153901 CCACCTTGCGTCGTCGTAT 60.154 57.895 3.66 0.00 39.49 3.06
530 531 1.794151 TTCCACCTTGCGTCGTCGTA 61.794 55.000 3.66 0.00 39.49 3.43
531 532 3.141522 TTCCACCTTGCGTCGTCGT 62.142 57.895 3.66 0.00 39.49 4.34
532 533 2.355363 TTCCACCTTGCGTCGTCG 60.355 61.111 0.00 0.00 40.37 5.12
533 534 0.389948 ATCTTCCACCTTGCGTCGTC 60.390 55.000 0.00 0.00 0.00 4.20
534 535 0.670546 CATCTTCCACCTTGCGTCGT 60.671 55.000 0.00 0.00 0.00 4.34
535 536 1.970917 GCATCTTCCACCTTGCGTCG 61.971 60.000 0.00 0.00 0.00 5.12
536 537 1.796796 GCATCTTCCACCTTGCGTC 59.203 57.895 0.00 0.00 0.00 5.19
537 538 3.987404 GCATCTTCCACCTTGCGT 58.013 55.556 0.00 0.00 0.00 5.24
539 540 2.486966 GCGCATCTTCCACCTTGC 59.513 61.111 0.30 0.00 0.00 4.01
540 541 2.753966 CCGCGCATCTTCCACCTTG 61.754 63.158 8.75 0.00 0.00 3.61
541 542 2.436646 CCGCGCATCTTCCACCTT 60.437 61.111 8.75 0.00 0.00 3.50
542 543 4.473520 CCCGCGCATCTTCCACCT 62.474 66.667 8.75 0.00 0.00 4.00
543 544 3.757248 ATCCCGCGCATCTTCCACC 62.757 63.158 8.75 0.00 0.00 4.61
544 545 2.203070 ATCCCGCGCATCTTCCAC 60.203 61.111 8.75 0.00 0.00 4.02
545 546 2.203056 CATCCCGCGCATCTTCCA 60.203 61.111 8.75 0.00 0.00 3.53
546 547 1.502163 CTTCATCCCGCGCATCTTCC 61.502 60.000 8.75 0.00 0.00 3.46
547 548 0.530650 TCTTCATCCCGCGCATCTTC 60.531 55.000 8.75 0.00 0.00 2.87
548 549 0.107703 TTCTTCATCCCGCGCATCTT 60.108 50.000 8.75 0.00 0.00 2.40
549 550 0.531532 CTTCTTCATCCCGCGCATCT 60.532 55.000 8.75 0.00 0.00 2.90
550 551 0.530650 TCTTCTTCATCCCGCGCATC 60.531 55.000 8.75 0.00 0.00 3.91
551 552 0.107703 TTCTTCTTCATCCCGCGCAT 60.108 50.000 8.75 0.00 0.00 4.73
552 553 0.107703 ATTCTTCTTCATCCCGCGCA 60.108 50.000 8.75 0.00 0.00 6.09
553 554 0.305922 CATTCTTCTTCATCCCGCGC 59.694 55.000 0.00 0.00 0.00 6.86
554 555 0.940126 CCATTCTTCTTCATCCCGCG 59.060 55.000 0.00 0.00 0.00 6.46
555 556 1.134098 TCCCATTCTTCTTCATCCCGC 60.134 52.381 0.00 0.00 0.00 6.13
556 557 3.209410 CTTCCCATTCTTCTTCATCCCG 58.791 50.000 0.00 0.00 0.00 5.14
557 558 2.954989 GCTTCCCATTCTTCTTCATCCC 59.045 50.000 0.00 0.00 0.00 3.85
558 559 2.954989 GGCTTCCCATTCTTCTTCATCC 59.045 50.000 0.00 0.00 0.00 3.51
559 560 3.631227 CAGGCTTCCCATTCTTCTTCATC 59.369 47.826 0.00 0.00 0.00 2.92
560 561 3.267812 TCAGGCTTCCCATTCTTCTTCAT 59.732 43.478 0.00 0.00 0.00 2.57
561 562 2.644299 TCAGGCTTCCCATTCTTCTTCA 59.356 45.455 0.00 0.00 0.00 3.02
562 563 3.356529 TCAGGCTTCCCATTCTTCTTC 57.643 47.619 0.00 0.00 0.00 2.87
563 564 3.683847 CGATCAGGCTTCCCATTCTTCTT 60.684 47.826 0.00 0.00 0.00 2.52
564 565 2.158842 CGATCAGGCTTCCCATTCTTCT 60.159 50.000 0.00 0.00 0.00 2.85
565 566 2.216898 CGATCAGGCTTCCCATTCTTC 58.783 52.381 0.00 0.00 0.00 2.87
566 567 1.133976 CCGATCAGGCTTCCCATTCTT 60.134 52.381 0.00 0.00 0.00 2.52
567 568 0.471617 CCGATCAGGCTTCCCATTCT 59.528 55.000 0.00 0.00 0.00 2.40
568 569 0.469917 TCCGATCAGGCTTCCCATTC 59.530 55.000 0.00 0.00 40.77 2.67
569 570 0.181350 GTCCGATCAGGCTTCCCATT 59.819 55.000 0.00 0.00 40.77 3.16
570 571 1.832912 GTCCGATCAGGCTTCCCAT 59.167 57.895 0.00 0.00 40.77 4.00
571 572 2.721167 CGTCCGATCAGGCTTCCCA 61.721 63.158 0.00 0.00 40.77 4.37
572 573 2.107141 CGTCCGATCAGGCTTCCC 59.893 66.667 0.00 0.00 40.77 3.97
573 574 2.107141 CCGTCCGATCAGGCTTCC 59.893 66.667 0.00 0.00 40.77 3.46
574 575 2.586357 GCCGTCCGATCAGGCTTC 60.586 66.667 10.19 0.00 46.83 3.86
578 579 0.391130 TTTTCAGCCGTCCGATCAGG 60.391 55.000 0.00 0.00 42.97 3.86
579 580 1.394917 CTTTTTCAGCCGTCCGATCAG 59.605 52.381 0.00 0.00 0.00 2.90
580 581 1.438651 CTTTTTCAGCCGTCCGATCA 58.561 50.000 0.00 0.00 0.00 2.92
581 582 0.727398 CCTTTTTCAGCCGTCCGATC 59.273 55.000 0.00 0.00 0.00 3.69
582 583 0.036306 ACCTTTTTCAGCCGTCCGAT 59.964 50.000 0.00 0.00 0.00 4.18
583 584 0.179040 AACCTTTTTCAGCCGTCCGA 60.179 50.000 0.00 0.00 0.00 4.55
584 585 0.040425 CAACCTTTTTCAGCCGTCCG 60.040 55.000 0.00 0.00 0.00 4.79
585 586 0.318699 GCAACCTTTTTCAGCCGTCC 60.319 55.000 0.00 0.00 0.00 4.79
586 587 0.383949 TGCAACCTTTTTCAGCCGTC 59.616 50.000 0.00 0.00 0.00 4.79
587 588 1.000274 GATGCAACCTTTTTCAGCCGT 60.000 47.619 0.00 0.00 0.00 5.68
588 589 1.000385 TGATGCAACCTTTTTCAGCCG 60.000 47.619 0.00 0.00 0.00 5.52
589 590 2.224018 TGTGATGCAACCTTTTTCAGCC 60.224 45.455 0.00 0.00 0.00 4.85
590 591 2.796593 GTGTGATGCAACCTTTTTCAGC 59.203 45.455 0.00 0.00 0.00 4.26
591 592 3.044986 CGTGTGATGCAACCTTTTTCAG 58.955 45.455 0.00 0.00 0.00 3.02
592 593 2.223688 CCGTGTGATGCAACCTTTTTCA 60.224 45.455 0.00 0.00 0.00 2.69
593 594 2.393764 CCGTGTGATGCAACCTTTTTC 58.606 47.619 0.00 0.00 0.00 2.29
594 595 1.537990 GCCGTGTGATGCAACCTTTTT 60.538 47.619 0.00 0.00 0.00 1.94
595 596 0.031994 GCCGTGTGATGCAACCTTTT 59.968 50.000 0.00 0.00 0.00 2.27
596 597 0.823356 AGCCGTGTGATGCAACCTTT 60.823 50.000 0.00 0.00 0.00 3.11
597 598 1.228245 AGCCGTGTGATGCAACCTT 60.228 52.632 0.00 0.00 0.00 3.50
598 599 1.968017 CAGCCGTGTGATGCAACCT 60.968 57.895 0.00 0.00 0.00 3.50
599 600 2.562912 CAGCCGTGTGATGCAACC 59.437 61.111 0.00 0.00 0.00 3.77
600 601 2.562912 CCAGCCGTGTGATGCAAC 59.437 61.111 0.00 0.00 0.00 4.17
601 602 2.672651 CCCAGCCGTGTGATGCAA 60.673 61.111 0.00 0.00 0.00 4.08
604 605 3.129502 CTGCCCAGCCGTGTGATG 61.130 66.667 0.00 0.00 0.00 3.07
605 606 4.415150 CCTGCCCAGCCGTGTGAT 62.415 66.667 0.00 0.00 0.00 3.06
618 619 4.752879 TAGTCGCCGGTTGCCTGC 62.753 66.667 1.90 0.00 36.24 4.85
619 620 1.940883 TACTAGTCGCCGGTTGCCTG 61.941 60.000 1.90 0.00 36.24 4.85
620 621 1.664321 CTACTAGTCGCCGGTTGCCT 61.664 60.000 1.90 0.00 36.24 4.75
621 622 1.226888 CTACTAGTCGCCGGTTGCC 60.227 63.158 1.90 0.00 36.24 4.52
622 623 0.525029 GACTACTAGTCGCCGGTTGC 60.525 60.000 1.90 0.00 35.28 4.17
623 624 3.618774 GACTACTAGTCGCCGGTTG 57.381 57.895 1.90 0.00 35.28 3.77
631 632 2.424246 AGAGCAAAGCCGACTACTAGTC 59.576 50.000 0.00 6.18 41.71 2.59
632 633 2.448453 AGAGCAAAGCCGACTACTAGT 58.552 47.619 0.00 0.00 0.00 2.57
633 634 3.512033 AAGAGCAAAGCCGACTACTAG 57.488 47.619 0.00 0.00 0.00 2.57
634 635 3.672511 CGAAAGAGCAAAGCCGACTACTA 60.673 47.826 0.00 0.00 0.00 1.82
635 636 2.689646 GAAAGAGCAAAGCCGACTACT 58.310 47.619 0.00 0.00 0.00 2.57
636 637 1.390463 CGAAAGAGCAAAGCCGACTAC 59.610 52.381 0.00 0.00 0.00 2.73
637 638 1.710013 CGAAAGAGCAAAGCCGACTA 58.290 50.000 0.00 0.00 0.00 2.59
638 639 1.569479 GCGAAAGAGCAAAGCCGACT 61.569 55.000 0.00 0.00 37.05 4.18
639 640 1.154395 GCGAAAGAGCAAAGCCGAC 60.154 57.895 0.00 0.00 37.05 4.79
640 641 0.037697 TAGCGAAAGAGCAAAGCCGA 60.038 50.000 0.00 0.00 40.15 5.54
641 642 0.371645 CTAGCGAAAGAGCAAAGCCG 59.628 55.000 0.00 0.00 40.15 5.52
642 643 1.663135 CTCTAGCGAAAGAGCAAAGCC 59.337 52.381 2.02 0.00 36.84 4.35
643 644 1.663135 CCTCTAGCGAAAGAGCAAAGC 59.337 52.381 8.53 0.00 41.48 3.51
644 645 3.238108 TCCTCTAGCGAAAGAGCAAAG 57.762 47.619 8.53 0.00 41.48 2.77
682 683 2.666207 CCCCGAACCGTTGGATCA 59.334 61.111 0.00 0.00 0.00 2.92
692 693 1.700955 TAGATCTAGGTGCCCCGAAC 58.299 55.000 0.00 0.00 35.12 3.95
705 706 4.925576 CGCGCGGCCGTTAGATCT 62.926 66.667 28.70 0.00 36.67 2.75
770 772 4.803426 GTGGGAGCGACGCTGGAG 62.803 72.222 29.85 0.00 39.88 3.86
816 818 0.974010 TTAAGGACGGGAGATGCCGT 60.974 55.000 18.75 18.75 45.57 5.68
851 853 0.400213 TGTGGGGCGAACAGATTTCT 59.600 50.000 0.00 0.00 0.00 2.52
922 924 2.170817 GGAGAGTATTGGAGTTGGGGAC 59.829 54.545 0.00 0.00 0.00 4.46
1131 1133 2.274232 TTACGCGGTCGATCCACTGG 62.274 60.000 12.47 0.00 39.41 4.00
1132 1134 0.248907 ATTACGCGGTCGATCCACTG 60.249 55.000 12.47 0.00 39.41 3.66
1133 1135 0.248907 CATTACGCGGTCGATCCACT 60.249 55.000 12.47 0.00 39.41 4.00
1134 1136 1.818221 GCATTACGCGGTCGATCCAC 61.818 60.000 12.47 0.00 39.41 4.02
1135 1137 1.590525 GCATTACGCGGTCGATCCA 60.591 57.895 12.47 0.00 39.41 3.41
1136 1138 2.308039 GGCATTACGCGGTCGATCC 61.308 63.158 12.47 0.00 43.84 3.36
1137 1139 1.276145 GAGGCATTACGCGGTCGATC 61.276 60.000 12.47 0.00 43.84 3.69
1138 1140 1.299926 GAGGCATTACGCGGTCGAT 60.300 57.895 12.47 0.00 43.84 3.59
1139 1141 2.103538 GAGGCATTACGCGGTCGA 59.896 61.111 12.47 0.00 43.84 4.20
1140 1142 2.960129 GGAGGCATTACGCGGTCG 60.960 66.667 12.47 0.00 43.84 4.79
1141 1143 1.591863 GAGGAGGCATTACGCGGTC 60.592 63.158 12.47 0.00 43.84 4.79
1142 1144 2.499685 GAGGAGGCATTACGCGGT 59.500 61.111 12.47 0.00 43.84 5.68
1143 1145 2.280186 GGAGGAGGCATTACGCGG 60.280 66.667 12.47 0.00 43.84 6.46
1144 1146 2.280186 GGGAGGAGGCATTACGCG 60.280 66.667 3.53 3.53 43.84 6.01
1145 1147 1.984288 AAGGGGAGGAGGCATTACGC 61.984 60.000 0.00 0.00 41.28 4.42
1146 1148 0.106894 GAAGGGGAGGAGGCATTACG 59.893 60.000 0.00 0.00 0.00 3.18
1147 1149 0.474614 GGAAGGGGAGGAGGCATTAC 59.525 60.000 0.00 0.00 0.00 1.89
1148 1150 0.697854 GGGAAGGGGAGGAGGCATTA 60.698 60.000 0.00 0.00 0.00 1.90
1149 1151 2.009302 GGGAAGGGGAGGAGGCATT 61.009 63.158 0.00 0.00 0.00 3.56
1150 1152 2.368878 GGGAAGGGGAGGAGGCAT 60.369 66.667 0.00 0.00 0.00 4.40
1151 1153 3.287954 ATGGGAAGGGGAGGAGGCA 62.288 63.158 0.00 0.00 0.00 4.75
1152 1154 2.368878 ATGGGAAGGGGAGGAGGC 60.369 66.667 0.00 0.00 0.00 4.70
1153 1155 0.766288 GAGATGGGAAGGGGAGGAGG 60.766 65.000 0.00 0.00 0.00 4.30
1154 1156 0.267356 AGAGATGGGAAGGGGAGGAG 59.733 60.000 0.00 0.00 0.00 3.69
1155 1157 1.632769 TAGAGATGGGAAGGGGAGGA 58.367 55.000 0.00 0.00 0.00 3.71
1156 1158 2.731339 ATAGAGATGGGAAGGGGAGG 57.269 55.000 0.00 0.00 0.00 4.30
1157 1159 6.028780 AGAAATATAGAGATGGGAAGGGGAG 58.971 44.000 0.00 0.00 0.00 4.30
1158 1160 5.787494 CAGAAATATAGAGATGGGAAGGGGA 59.213 44.000 0.00 0.00 0.00 4.81
1159 1161 5.045286 CCAGAAATATAGAGATGGGAAGGGG 60.045 48.000 0.00 0.00 0.00 4.79
1160 1162 6.059787 CCAGAAATATAGAGATGGGAAGGG 57.940 45.833 0.00 0.00 0.00 3.95
1166 1168 4.753233 CGCTCCCAGAAATATAGAGATGG 58.247 47.826 0.00 0.00 0.00 3.51
1167 1169 4.180057 GCGCTCCCAGAAATATAGAGATG 58.820 47.826 0.00 0.00 0.00 2.90
1168 1170 3.119316 CGCGCTCCCAGAAATATAGAGAT 60.119 47.826 5.56 0.00 0.00 2.75
1169 1171 2.229062 CGCGCTCCCAGAAATATAGAGA 59.771 50.000 5.56 0.00 0.00 3.10
1170 1172 2.600731 CGCGCTCCCAGAAATATAGAG 58.399 52.381 5.56 0.00 0.00 2.43
1171 1173 1.272490 CCGCGCTCCCAGAAATATAGA 59.728 52.381 5.56 0.00 0.00 1.98
1172 1174 1.714794 CCGCGCTCCCAGAAATATAG 58.285 55.000 5.56 0.00 0.00 1.31
1173 1175 0.320421 GCCGCGCTCCCAGAAATATA 60.320 55.000 5.56 0.00 0.00 0.86
1174 1176 1.598130 GCCGCGCTCCCAGAAATAT 60.598 57.895 5.56 0.00 0.00 1.28
1192 1339 5.163519 ACTCAAAACCAGATCAAACCAACAG 60.164 40.000 0.00 0.00 0.00 3.16
1220 1367 3.253838 CTCCCCCAAACCCGGTCA 61.254 66.667 0.00 0.00 0.00 4.02
1221 1368 4.043100 CCTCCCCCAAACCCGGTC 62.043 72.222 0.00 0.00 0.00 4.79
1249 1397 7.823745 AATATATCACAATCACCCAAAGACC 57.176 36.000 0.00 0.00 0.00 3.85
1270 1418 1.277579 TACCGGCCAGTCACCAAATA 58.722 50.000 0.00 0.00 0.00 1.40
1292 1440 2.990066 ATTGCACAAACCGGGAAAAA 57.010 40.000 6.32 0.00 0.00 1.94
1368 1519 5.818857 TGCGAGTTTGTAGGAAAGTTTACTT 59.181 36.000 5.46 0.00 37.91 2.24
1426 1577 3.500680 TCGCCAAAATGAGGTGAAAGTAC 59.499 43.478 0.00 0.00 42.32 2.73
1498 1649 3.563223 CTTCTTGGATTGGCTGGATCAT 58.437 45.455 0.00 0.00 0.00 2.45
1526 1677 0.169672 CAAACTTCGCATGCAGAGGG 59.830 55.000 19.57 13.63 0.00 4.30
1527 1678 0.169672 CCAAACTTCGCATGCAGAGG 59.830 55.000 19.57 17.44 0.00 3.69
1528 1679 1.159285 TCCAAACTTCGCATGCAGAG 58.841 50.000 19.57 16.35 0.00 3.35
1529 1680 1.536766 CTTCCAAACTTCGCATGCAGA 59.463 47.619 19.57 13.08 0.00 4.26
1530 1681 1.536766 TCTTCCAAACTTCGCATGCAG 59.463 47.619 19.57 11.11 0.00 4.41
1533 1684 3.250762 TGTTCTCTTCCAAACTTCGCATG 59.749 43.478 0.00 0.00 0.00 4.06
1534 1685 3.476552 TGTTCTCTTCCAAACTTCGCAT 58.523 40.909 0.00 0.00 0.00 4.73
1536 1687 5.220681 GGATATGTTCTCTTCCAAACTTCGC 60.221 44.000 0.00 0.00 0.00 4.70
1537 1688 6.109359 AGGATATGTTCTCTTCCAAACTTCG 58.891 40.000 0.00 0.00 0.00 3.79
1538 1689 7.279758 CAGAGGATATGTTCTCTTCCAAACTTC 59.720 40.741 0.00 0.00 38.19 3.01
1539 1690 7.108847 CAGAGGATATGTTCTCTTCCAAACTT 58.891 38.462 0.00 0.00 38.19 2.66
1541 1692 5.295540 GCAGAGGATATGTTCTCTTCCAAAC 59.704 44.000 0.00 0.00 38.19 2.93
1542 1693 5.431765 GCAGAGGATATGTTCTCTTCCAAA 58.568 41.667 0.00 0.00 38.19 3.28
1543 1694 4.141620 GGCAGAGGATATGTTCTCTTCCAA 60.142 45.833 10.93 0.00 41.14 3.53
1590 1742 4.777896 TCTTGAGGAGCTGTAACAATAGGT 59.222 41.667 0.00 0.00 0.00 3.08
1833 1987 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
1834 1988 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
1835 1989 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
1836 1990 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1837 1991 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1838 1992 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1839 1993 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
1840 1994 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
1841 1995 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
1842 1996 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
1843 1997 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
1844 1998 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
1845 1999 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
1846 2000 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
1848 2002 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
1849 2003 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
1850 2004 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
1851 2005 8.814038 ATTGAAATGCCTAGAAAGACAAGTAT 57.186 30.769 0.00 0.00 0.00 2.12
1852 2006 9.733556 TTATTGAAATGCCTAGAAAGACAAGTA 57.266 29.630 0.00 0.00 0.00 2.24
1853 2007 8.635765 TTATTGAAATGCCTAGAAAGACAAGT 57.364 30.769 0.00 0.00 0.00 3.16
1854 2008 8.734386 ACTTATTGAAATGCCTAGAAAGACAAG 58.266 33.333 0.00 0.00 0.00 3.16
1855 2009 8.514594 CACTTATTGAAATGCCTAGAAAGACAA 58.485 33.333 0.00 0.00 0.00 3.18
1856 2010 7.882791 TCACTTATTGAAATGCCTAGAAAGACA 59.117 33.333 0.00 0.00 0.00 3.41
1857 2011 8.178313 GTCACTTATTGAAATGCCTAGAAAGAC 58.822 37.037 0.00 0.00 35.39 3.01
1858 2012 8.103305 AGTCACTTATTGAAATGCCTAGAAAGA 58.897 33.333 0.00 0.00 35.39 2.52
1859 2013 8.273780 AGTCACTTATTGAAATGCCTAGAAAG 57.726 34.615 0.00 0.00 35.39 2.62
1860 2014 9.905713 ATAGTCACTTATTGAAATGCCTAGAAA 57.094 29.630 0.00 0.00 35.39 2.52
1865 2019 9.424319 CGTATATAGTCACTTATTGAAATGCCT 57.576 33.333 0.00 0.00 35.39 4.75
1866 2020 8.656849 CCGTATATAGTCACTTATTGAAATGCC 58.343 37.037 0.00 0.00 35.39 4.40
1867 2021 9.419297 TCCGTATATAGTCACTTATTGAAATGC 57.581 33.333 0.00 0.00 35.39 3.56
1869 2023 9.640963 GCTCCGTATATAGTCACTTATTGAAAT 57.359 33.333 0.00 0.00 35.39 2.17
1870 2024 8.635328 TGCTCCGTATATAGTCACTTATTGAAA 58.365 33.333 0.00 0.00 35.39 2.69
1871 2025 8.173542 TGCTCCGTATATAGTCACTTATTGAA 57.826 34.615 0.00 0.00 35.39 2.69
1872 2026 7.754851 TGCTCCGTATATAGTCACTTATTGA 57.245 36.000 0.00 0.00 0.00 2.57
1873 2027 8.812147 TTTGCTCCGTATATAGTCACTTATTG 57.188 34.615 0.00 0.00 0.00 1.90
1874 2028 9.998106 ATTTTGCTCCGTATATAGTCACTTATT 57.002 29.630 0.00 0.00 0.00 1.40
1875 2029 9.424319 CATTTTGCTCCGTATATAGTCACTTAT 57.576 33.333 0.00 0.00 0.00 1.73
1876 2030 8.635328 TCATTTTGCTCCGTATATAGTCACTTA 58.365 33.333 0.00 0.00 0.00 2.24
1877 2031 7.497595 TCATTTTGCTCCGTATATAGTCACTT 58.502 34.615 0.00 0.00 0.00 3.16
1878 2032 7.050970 TCATTTTGCTCCGTATATAGTCACT 57.949 36.000 0.00 0.00 0.00 3.41
1879 2033 6.924060 ACTCATTTTGCTCCGTATATAGTCAC 59.076 38.462 0.00 0.00 0.00 3.67
1880 2034 6.923508 CACTCATTTTGCTCCGTATATAGTCA 59.076 38.462 0.00 0.00 0.00 3.41
1881 2035 7.145985 TCACTCATTTTGCTCCGTATATAGTC 58.854 38.462 0.00 0.00 0.00 2.59
1882 2036 7.050970 TCACTCATTTTGCTCCGTATATAGT 57.949 36.000 0.00 0.00 0.00 2.12
1883 2037 7.946655 TTCACTCATTTTGCTCCGTATATAG 57.053 36.000 0.00 0.00 0.00 1.31
1884 2038 8.367911 AGATTCACTCATTTTGCTCCGTATATA 58.632 33.333 0.00 0.00 0.00 0.86
1885 2039 7.220030 AGATTCACTCATTTTGCTCCGTATAT 58.780 34.615 0.00 0.00 0.00 0.86
1886 2040 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
1887 2041 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1888 2042 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1889 2043 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1890 2044 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1891 2045 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1892 2046 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1931 2085 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
1932 2086 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
1934 2088 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
1935 2089 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
1936 2090 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
1937 2091 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
1938 2092 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
1962 2116 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
1963 2117 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
1964 2118 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
1965 2119 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
1966 2120 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1967 2121 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1968 2122 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1969 2123 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1970 2124 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1971 2125 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1972 2126 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1973 2127 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1974 2128 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
1975 2129 7.513091 AGAAATACTCCCTCCGTTCCTAAATAT 59.487 37.037 0.00 0.00 0.00 1.28
1976 2130 6.842807 AGAAATACTCCCTCCGTTCCTAAATA 59.157 38.462 0.00 0.00 0.00 1.40
1977 2131 5.666265 AGAAATACTCCCTCCGTTCCTAAAT 59.334 40.000 0.00 0.00 0.00 1.40
1978 2132 5.028131 AGAAATACTCCCTCCGTTCCTAAA 58.972 41.667 0.00 0.00 0.00 1.85
1979 2133 4.617593 AGAAATACTCCCTCCGTTCCTAA 58.382 43.478 0.00 0.00 0.00 2.69
1980 2134 4.261411 AGAAATACTCCCTCCGTTCCTA 57.739 45.455 0.00 0.00 0.00 2.94
1981 2135 3.117552 AGAAATACTCCCTCCGTTCCT 57.882 47.619 0.00 0.00 0.00 3.36
1982 2136 3.908643 AAGAAATACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
1983 2137 7.101700 TCTTTTAAGAAATACTCCCTCCGTTC 58.898 38.462 0.00 0.00 30.73 3.95
1984 2138 7.012661 TCTTTTAAGAAATACTCCCTCCGTT 57.987 36.000 0.00 0.00 30.73 4.44
1985 2139 6.616237 TCTTTTAAGAAATACTCCCTCCGT 57.384 37.500 0.00 0.00 30.73 4.69
1986 2140 7.104290 AGTTCTTTTAAGAAATACTCCCTCCG 58.896 38.462 6.50 0.00 45.77 4.63
1987 2141 8.731605 CAAGTTCTTTTAAGAAATACTCCCTCC 58.268 37.037 6.50 0.00 45.77 4.30
1988 2142 8.731605 CCAAGTTCTTTTAAGAAATACTCCCTC 58.268 37.037 6.50 0.00 45.77 4.30
1989 2143 8.445588 TCCAAGTTCTTTTAAGAAATACTCCCT 58.554 33.333 6.50 0.00 45.77 4.20
1990 2144 8.631480 TCCAAGTTCTTTTAAGAAATACTCCC 57.369 34.615 6.50 0.00 45.77 4.30
2122 2280 4.946157 AGAAGAATTTGTGACCATAGGCAG 59.054 41.667 0.00 0.00 0.00 4.85
2158 2316 4.832266 TCCATTAATCAAAGTGCCACTGTT 59.168 37.500 0.00 0.00 0.00 3.16
2327 2498 6.039829 GGAGTTTTCAGTTTTCCAGTCTTCAT 59.960 38.462 0.00 0.00 0.00 2.57
2407 2578 9.696572 ACTTTTCTAGAGGTGACATACATACTA 57.303 33.333 0.00 0.00 0.00 1.82
2424 2595 4.167268 GTGTGACGCCTCTACTTTTCTAG 58.833 47.826 0.00 0.00 0.00 2.43
2447 2618 8.989653 ATAAGTCTTCAGCTTCTACACTAAAC 57.010 34.615 0.00 0.00 0.00 2.01
2752 3051 6.033966 ACAAGCTTGAAAGGTTTTTAACTCG 58.966 36.000 32.50 0.00 43.61 4.18
2999 3298 1.068127 GATCCATCAAAGGTGCCATGC 59.932 52.381 0.00 0.00 0.00 4.06
3076 3375 3.307906 CCCCGTCGTGTCTGGGAA 61.308 66.667 0.00 0.00 46.41 3.97
3267 3567 5.969423 ACCATGAAGCATGAAATTAGGTTG 58.031 37.500 8.87 0.00 43.81 3.77
3320 3620 9.582431 TGCAGACACTTAATAAGTCAATACTAC 57.418 33.333 2.14 0.00 40.46 2.73
3343 3643 2.051334 ACAAGTAACAACAGCCTGCA 57.949 45.000 0.00 0.00 0.00 4.41
3464 3764 3.476552 GTTGCGAAGGATAATCCCATCA 58.523 45.455 0.00 0.00 37.19 3.07
3666 3987 4.072131 CCTTAGGCAGTTGTAAGAAGCAA 58.928 43.478 0.00 0.00 0.00 3.91
3685 4006 6.963322 ACCTTGACATAGAAATTAGAGCCTT 58.037 36.000 0.00 0.00 0.00 4.35
3716 4037 1.352083 ACTGCCCTGAAGCTGTCTTA 58.648 50.000 0.00 0.00 40.45 2.10
3946 4269 5.558844 GCAAAGTGCCAAGCATTAAAGAAAC 60.559 40.000 0.00 0.00 41.91 2.78
4327 4651 5.338708 CCCTCCATCTCAAAGTAAGTGTCAT 60.339 44.000 0.00 0.00 0.00 3.06
4485 4810 1.760613 CAGGCCTGGAATGCAATCAAT 59.239 47.619 26.14 0.00 0.00 2.57
4610 4935 2.165167 CCTTTTGGCTCTCATCTGCAA 58.835 47.619 0.00 0.00 0.00 4.08
4737 5062 1.678101 ACTTTTGCAACAGACTCTGGC 59.322 47.619 19.17 5.77 35.51 4.85
4933 5258 2.665165 TCAACCAAATGAGCACCAGTT 58.335 42.857 0.00 0.00 32.67 3.16
4956 5281 5.472137 TCTGTTTGGATACTGTTTAAGGCAC 59.528 40.000 0.00 0.00 37.61 5.01
4996 5321 0.316196 GTGTGTCAGTTTCTGCGTGC 60.316 55.000 0.00 0.00 0.00 5.34
5014 5339 7.175467 TCAATTGAAATAGAGTGCAATGACAGT 59.825 33.333 5.45 0.00 31.86 3.55
5020 5345 7.341256 AGGATGTCAATTGAAATAGAGTGCAAT 59.659 33.333 11.22 0.00 32.75 3.56
5224 5549 0.305313 GTTACCAAAGCACGCAACGA 59.695 50.000 0.00 0.00 0.00 3.85
5411 5738 5.045724 TGCCCTTCAAATTGCAGGAAAATAT 60.046 36.000 13.18 0.00 32.22 1.28
5418 5745 3.826637 CTGCCCTTCAAATTGCAGG 57.173 52.632 4.65 4.65 45.69 4.85
5515 5851 0.524414 CGCGGACATCATATACGGGA 59.476 55.000 0.00 0.00 39.41 5.14
5569 5905 0.591170 CACCAAACATCCACGGACAC 59.409 55.000 0.00 0.00 0.00 3.67
5570 5906 0.181587 ACACCAAACATCCACGGACA 59.818 50.000 0.00 0.00 0.00 4.02
5571 5907 0.591170 CACACCAAACATCCACGGAC 59.409 55.000 0.00 0.00 0.00 4.79
5572 5908 0.181587 ACACACCAAACATCCACGGA 59.818 50.000 0.00 0.00 0.00 4.69
5573 5909 0.591170 GACACACCAAACATCCACGG 59.409 55.000 0.00 0.00 0.00 4.94
5574 5910 1.593196 AGACACACCAAACATCCACG 58.407 50.000 0.00 0.00 0.00 4.94
5575 5911 5.705609 AAATAGACACACCAAACATCCAC 57.294 39.130 0.00 0.00 0.00 4.02
5576 5912 5.830457 TCAAAATAGACACACCAAACATCCA 59.170 36.000 0.00 0.00 0.00 3.41
5577 5913 6.325919 TCAAAATAGACACACCAAACATCC 57.674 37.500 0.00 0.00 0.00 3.51
5578 5914 7.370383 ACATCAAAATAGACACACCAAACATC 58.630 34.615 0.00 0.00 0.00 3.06
5579 5915 7.288810 ACATCAAAATAGACACACCAAACAT 57.711 32.000 0.00 0.00 0.00 2.71
5580 5916 6.707440 ACATCAAAATAGACACACCAAACA 57.293 33.333 0.00 0.00 0.00 2.83
5581 5917 6.795114 CGTACATCAAAATAGACACACCAAAC 59.205 38.462 0.00 0.00 0.00 2.93
5582 5918 6.706716 TCGTACATCAAAATAGACACACCAAA 59.293 34.615 0.00 0.00 0.00 3.28
5583 5919 6.146510 GTCGTACATCAAAATAGACACACCAA 59.853 38.462 0.00 0.00 0.00 3.67
5584 5920 5.636121 GTCGTACATCAAAATAGACACACCA 59.364 40.000 0.00 0.00 0.00 4.17
5585 5921 5.220154 CGTCGTACATCAAAATAGACACACC 60.220 44.000 0.00 0.00 0.00 4.16
5586 5922 5.344128 ACGTCGTACATCAAAATAGACACAC 59.656 40.000 0.00 0.00 0.00 3.82
5587 5923 5.463286 ACGTCGTACATCAAAATAGACACA 58.537 37.500 0.00 0.00 0.00 3.72
5588 5924 6.231365 CAACGTCGTACATCAAAATAGACAC 58.769 40.000 0.00 0.00 0.00 3.67
5589 5925 5.346551 CCAACGTCGTACATCAAAATAGACA 59.653 40.000 0.00 0.00 0.00 3.41
5590 5926 5.574055 TCCAACGTCGTACATCAAAATAGAC 59.426 40.000 0.00 0.00 0.00 2.59
5591 5927 5.712004 TCCAACGTCGTACATCAAAATAGA 58.288 37.500 0.00 0.00 0.00 1.98
5592 5928 6.397831 TTCCAACGTCGTACATCAAAATAG 57.602 37.500 0.00 0.00 0.00 1.73
5599 5935 2.222953 GGCATTTCCAACGTCGTACATC 60.223 50.000 0.00 0.00 34.01 3.06
5608 5944 4.576993 GCAAGGGCATTTCCAACG 57.423 55.556 0.00 0.00 40.72 4.10
5639 5975 4.623932 TGCTCTAAGAACACATTGTCCT 57.376 40.909 0.00 0.00 0.00 3.85
5681 6024 6.549952 GGACAGAGCAAAATTCATCACTAAG 58.450 40.000 0.00 0.00 0.00 2.18
5682 6025 5.122239 CGGACAGAGCAAAATTCATCACTAA 59.878 40.000 0.00 0.00 0.00 2.24
5753 6096 2.489329 CGACATTCTTTGGACAATGCCT 59.511 45.455 0.00 0.00 33.92 4.75
5761 6104 2.804697 TCACGACGACATTCTTTGGA 57.195 45.000 0.00 0.00 0.00 3.53
5773 6116 1.619207 GTTTCGCGAGATCACGACG 59.381 57.895 17.02 17.48 41.60 5.12
5786 6129 1.202177 CCTGGGATGCAATTCGTTTCG 60.202 52.381 0.00 0.00 0.00 3.46
5788 6131 2.214376 TCCTGGGATGCAATTCGTTT 57.786 45.000 0.00 0.00 0.00 3.60
5814 6157 2.812613 CGGGGAGCCAAAAACTGAACTA 60.813 50.000 0.00 0.00 0.00 2.24
5844 6187 1.455822 ACTTGGGAAATCCTGGGACA 58.544 50.000 0.00 0.00 36.20 4.02
5913 6256 1.210155 GATGCGGAACTGGTTGTGC 59.790 57.895 0.00 0.00 0.00 4.57
6120 7030 0.815734 CTTCGTGACCTGGGACGTAT 59.184 55.000 16.88 0.00 36.91 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.