Multiple sequence alignment - TraesCS3B01G286100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G286100 chr3B 100.000 2690 0 0 1 2690 457964497 457967186 0.000000e+00 4968.0
1 TraesCS3B01G286100 chr3D 89.370 2079 104 32 1 1987 356821270 356823323 0.000000e+00 2507.0
2 TraesCS3B01G286100 chr3D 83.636 275 14 14 2437 2690 356823910 356824174 2.080000e-56 230.0
3 TraesCS3B01G286100 chr3A 92.816 1378 46 17 686 2014 475716125 475717498 0.000000e+00 1947.0
4 TraesCS3B01G286100 chr3A 82.362 669 79 19 33 682 475714437 475715085 1.820000e-151 545.0
5 TraesCS3B01G286100 chr3A 93.727 271 5 6 2431 2690 475718412 475718681 1.940000e-106 396.0
6 TraesCS3B01G286100 chr3A 97.297 148 4 0 2277 2424 475718153 475718300 4.450000e-63 252.0
7 TraesCS3B01G286100 chr3A 93.798 129 4 1 2118 2242 475718028 475718156 9.830000e-45 191.0
8 TraesCS3B01G286100 chr3A 98.039 51 1 0 2037 2087 475717650 475717700 3.690000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G286100 chr3B 457964497 457967186 2689 False 4968.000000 4968 100.0000 1 2690 1 chr3B.!!$F1 2689
1 TraesCS3B01G286100 chr3D 356821270 356824174 2904 False 1368.500000 2507 86.5030 1 2690 2 chr3D.!!$F1 2689
2 TraesCS3B01G286100 chr3A 475714437 475718681 4244 False 570.133333 1947 93.0065 33 2690 6 chr3A.!!$F1 2657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
896 1986 0.322648 ACCACCACTAGTTAACCGCC 59.677 55.0 0.88 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1700 2796 0.041576 GAAACGTCAACCGGAAGCAC 60.042 55.0 9.46 0.0 42.24 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 8.801715 ATAAATATCCATTGACGCAATGTTTC 57.198 30.769 22.33 0.00 46.69 2.78
123 127 9.410556 GTTTGTAGCATCTACAATTTTTGACAT 57.589 29.630 17.04 0.00 37.29 3.06
274 279 6.207213 TGCAATTTTGGAAAAATGTTCATGC 58.793 32.000 10.15 10.15 32.70 4.06
312 317 5.414454 TGTCCGGAACTATTGAAAGAAATGG 59.586 40.000 5.23 0.00 0.00 3.16
336 358 4.873259 TCACAACATTTGAGAACTGTTCGA 59.127 37.500 14.35 3.32 30.99 3.71
424 446 9.273016 TGACTCTCTTTATACAAAAGAAAGTGG 57.727 33.333 10.35 0.00 37.60 4.00
473 496 7.433708 AAAACAGGAAAACAAACAGGAAAAG 57.566 32.000 0.00 0.00 0.00 2.27
476 499 7.654022 ACAGGAAAACAAACAGGAAAAGATA 57.346 32.000 0.00 0.00 0.00 1.98
600 625 6.704937 CCGGTATGTAGAAGATTCCTAAAACC 59.295 42.308 0.00 0.00 0.00 3.27
637 680 2.267174 CCGATCCGGTAGGTAGAAGA 57.733 55.000 0.00 0.00 42.73 2.87
638 681 2.579873 CCGATCCGGTAGGTAGAAGAA 58.420 52.381 0.00 0.00 42.73 2.52
639 682 2.553172 CCGATCCGGTAGGTAGAAGAAG 59.447 54.545 0.00 0.00 42.73 2.85
640 683 3.474600 CGATCCGGTAGGTAGAAGAAGA 58.525 50.000 0.00 0.00 39.05 2.87
641 684 4.073549 CGATCCGGTAGGTAGAAGAAGAT 58.926 47.826 0.00 0.00 39.05 2.40
642 685 4.519730 CGATCCGGTAGGTAGAAGAAGATT 59.480 45.833 0.00 0.00 39.05 2.40
643 686 5.335035 CGATCCGGTAGGTAGAAGAAGATTC 60.335 48.000 0.00 0.00 39.05 2.52
644 687 3.881688 TCCGGTAGGTAGAAGAAGATTCG 59.118 47.826 0.00 0.00 39.05 3.34
645 688 3.550436 CCGGTAGGTAGAAGAAGATTCGC 60.550 52.174 0.00 0.00 0.00 4.70
646 689 3.066342 CGGTAGGTAGAAGAAGATTCGCA 59.934 47.826 0.00 0.00 0.00 5.10
647 690 4.439700 CGGTAGGTAGAAGAAGATTCGCAA 60.440 45.833 0.00 0.00 0.00 4.85
648 691 5.416947 GGTAGGTAGAAGAAGATTCGCAAA 58.583 41.667 0.00 0.00 0.00 3.68
649 692 5.291371 GGTAGGTAGAAGAAGATTCGCAAAC 59.709 44.000 0.00 0.00 0.00 2.93
650 693 4.254492 AGGTAGAAGAAGATTCGCAAACC 58.746 43.478 0.00 0.00 0.00 3.27
651 694 3.062234 GGTAGAAGAAGATTCGCAAACCG 59.938 47.826 0.00 0.00 38.61 4.44
652 695 1.464997 AGAAGAAGATTCGCAAACCGC 59.535 47.619 0.00 0.00 36.73 5.68
653 696 1.464997 GAAGAAGATTCGCAAACCGCT 59.535 47.619 0.00 0.00 39.08 5.52
654 697 1.523758 AGAAGATTCGCAAACCGCTT 58.476 45.000 0.00 0.00 39.08 4.68
655 698 1.197721 AGAAGATTCGCAAACCGCTTG 59.802 47.619 0.00 0.00 39.08 4.01
682 1760 2.470821 CGACGTTAAGCTTGGGGATAG 58.529 52.381 9.86 0.00 0.00 2.08
688 1766 4.261197 CGTTAAGCTTGGGGATAGCATTTC 60.261 45.833 9.86 0.00 41.11 2.17
689 1767 3.386932 AAGCTTGGGGATAGCATTTCA 57.613 42.857 0.00 0.00 41.11 2.69
691 1769 3.294214 AGCTTGGGGATAGCATTTCAAG 58.706 45.455 0.00 0.00 41.11 3.02
692 1770 3.026694 GCTTGGGGATAGCATTTCAAGT 58.973 45.455 0.00 0.00 38.51 3.16
696 1774 6.350949 GCTTGGGGATAGCATTTCAAGTTTTA 60.351 38.462 0.00 0.00 38.51 1.52
786 1864 4.932799 TCACACAAACAGAAGAAACTCGAA 59.067 37.500 0.00 0.00 0.00 3.71
831 1921 2.983592 CCAACCAGAACCCCGCAC 60.984 66.667 0.00 0.00 0.00 5.34
850 1940 4.677832 CGCACAAATTTACGGCTAACTTTT 59.322 37.500 0.00 0.00 0.00 2.27
851 1941 5.174216 CGCACAAATTTACGGCTAACTTTTT 59.826 36.000 0.00 0.00 0.00 1.94
882 1972 1.681327 TCCCGTGCTCTCTACCACC 60.681 63.158 0.00 0.00 0.00 4.61
896 1986 0.322648 ACCACCACTAGTTAACCGCC 59.677 55.000 0.88 0.00 0.00 6.13
995 2085 1.352083 CTCCTCTCCTTCCAACACCA 58.648 55.000 0.00 0.00 0.00 4.17
1073 2163 4.129737 CTCCGTCGATGCCCGTGT 62.130 66.667 0.00 0.00 39.75 4.49
1074 2164 4.124351 TCCGTCGATGCCCGTGTC 62.124 66.667 0.00 0.00 39.75 3.67
1077 2167 2.264794 GTCGATGCCCGTGTCCTT 59.735 61.111 0.00 0.00 39.75 3.36
1732 2856 3.283751 TGACGTTTCTTGGACACCATTT 58.716 40.909 0.00 0.00 31.53 2.32
1835 2964 3.592059 TGCGTTTCATAGGTAACCTGTC 58.408 45.455 0.00 0.00 34.61 3.51
1883 3032 1.333881 CGCCGGTCTATTCTGTACTCG 60.334 57.143 1.90 0.00 0.00 4.18
1891 3043 6.511444 CGGTCTATTCTGTACTCGGAAGTTAG 60.511 46.154 0.00 0.00 41.47 2.34
1917 3070 5.880054 TGTCGGAATGGATCTTCTTTTTC 57.120 39.130 0.00 0.00 0.00 2.29
1918 3071 4.391830 TGTCGGAATGGATCTTCTTTTTCG 59.608 41.667 0.00 0.00 0.00 3.46
2004 3157 2.222729 CGGTTACGTACAGATTGCAAGC 60.223 50.000 6.58 6.58 34.81 4.01
2027 3197 0.524862 CTCATGCAACACCAGCCTTC 59.475 55.000 0.00 0.00 0.00 3.46
2089 3557 2.717524 CAAACAACTTGCGCTTTTGG 57.282 45.000 9.73 0.00 0.00 3.28
2090 3558 1.999024 CAAACAACTTGCGCTTTTGGT 59.001 42.857 9.73 4.83 0.00 3.67
2091 3559 2.378445 AACAACTTGCGCTTTTGGTT 57.622 40.000 9.73 5.20 0.00 3.67
2092 3560 1.921243 ACAACTTGCGCTTTTGGTTC 58.079 45.000 9.73 0.00 0.00 3.62
2093 3561 1.203523 ACAACTTGCGCTTTTGGTTCA 59.796 42.857 9.73 0.00 0.00 3.18
2094 3562 1.854126 CAACTTGCGCTTTTGGTTCAG 59.146 47.619 9.73 0.00 0.00 3.02
2095 3563 0.249031 ACTTGCGCTTTTGGTTCAGC 60.249 50.000 9.73 0.00 0.00 4.26
2100 3568 2.010817 GCTTTTGGTTCAGCGTGCG 61.011 57.895 0.00 0.00 0.00 5.34
2101 3569 2.010817 CTTTTGGTTCAGCGTGCGC 61.011 57.895 8.67 8.67 42.33 6.09
2116 3584 1.884926 GCGCTCCAAATCTCCTCGG 60.885 63.158 0.00 0.00 0.00 4.63
2120 3588 1.472376 GCTCCAAATCTCCTCGGTGAG 60.472 57.143 0.00 0.00 0.00 3.51
2176 3957 2.266055 CACGCCAGGGAGAAGACC 59.734 66.667 0.00 0.00 0.00 3.85
2191 3972 3.637273 ACCAAGAGCCCGGGTCAC 61.637 66.667 24.63 13.14 31.89 3.67
2236 4021 3.057033 GTGAAGAATTTCATGCACCTGCT 60.057 43.478 0.00 0.00 44.62 4.24
2242 4027 1.186917 TTCATGCACCTGCTTTGGGG 61.187 55.000 0.00 0.00 42.66 4.96
2273 4058 2.029518 CAGAGCTGTCGCCACACA 59.970 61.111 0.00 0.00 36.60 3.72
2274 4059 2.029666 AGAGCTGTCGCCACACAC 59.970 61.111 0.00 0.00 36.60 3.82
2276 4061 3.521529 GAGCTGTCGCCACACACCT 62.522 63.158 0.00 0.00 36.60 4.00
2277 4062 3.349006 GCTGTCGCCACACACCTG 61.349 66.667 0.00 0.00 0.00 4.00
2278 4063 3.349006 CTGTCGCCACACACCTGC 61.349 66.667 0.00 0.00 0.00 4.85
2337 4122 2.027561 CCCGCATATTTATCTCCCGGAA 60.028 50.000 0.73 0.00 36.55 4.30
2385 4170 1.241990 CCAGCACAGCACAGCATCTT 61.242 55.000 0.00 0.00 0.00 2.40
2420 4205 6.954944 TGTCTAAACAGTTAACATGCAAGTC 58.045 36.000 8.61 0.00 0.00 3.01
2424 4209 3.820557 ACAGTTAACATGCAAGTCAGGT 58.179 40.909 8.61 0.00 42.14 4.00
2425 4210 3.565482 ACAGTTAACATGCAAGTCAGGTG 59.435 43.478 8.61 0.00 38.99 4.00
2426 4211 3.565482 CAGTTAACATGCAAGTCAGGTGT 59.435 43.478 8.61 0.00 38.99 4.16
2427 4212 3.815401 AGTTAACATGCAAGTCAGGTGTC 59.185 43.478 8.61 0.00 38.99 3.67
2428 4213 2.346766 AACATGCAAGTCAGGTGTCA 57.653 45.000 0.00 0.00 38.99 3.58
2429 4214 2.346766 ACATGCAAGTCAGGTGTCAA 57.653 45.000 0.00 0.00 38.42 3.18
2468 4374 1.568612 CGCGTTGAGCTCCACACAAT 61.569 55.000 17.31 0.00 45.59 2.71
2513 4419 2.940994 TTTTCTCCGTCCACCATTCA 57.059 45.000 0.00 0.00 0.00 2.57
2514 4420 2.472695 TTTCTCCGTCCACCATTCAG 57.527 50.000 0.00 0.00 0.00 3.02
2515 4421 1.639722 TTCTCCGTCCACCATTCAGA 58.360 50.000 0.00 0.00 0.00 3.27
2516 4422 1.186200 TCTCCGTCCACCATTCAGAG 58.814 55.000 0.00 0.00 0.00 3.35
2517 4423 1.186200 CTCCGTCCACCATTCAGAGA 58.814 55.000 0.00 0.00 0.00 3.10
2519 4425 1.550524 TCCGTCCACCATTCAGAGAAG 59.449 52.381 0.00 0.00 0.00 2.85
2520 4426 1.363744 CGTCCACCATTCAGAGAAGC 58.636 55.000 0.00 0.00 0.00 3.86
2521 4427 1.743996 GTCCACCATTCAGAGAAGCC 58.256 55.000 0.00 0.00 0.00 4.35
2523 4429 1.556911 TCCACCATTCAGAGAAGCCTC 59.443 52.381 0.00 0.00 39.72 4.70
2610 4529 4.162131 TCAGCTCTATATTTCACTGTGGCA 59.838 41.667 8.11 0.00 0.00 4.92
2611 4530 4.877823 CAGCTCTATATTTCACTGTGGCAA 59.122 41.667 8.11 1.99 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
289 294 5.414765 ACCATTTCTTTCAATAGTTCCGGAC 59.585 40.000 1.83 0.00 0.00 4.79
293 298 7.214467 TGTGACCATTTCTTTCAATAGTTCC 57.786 36.000 0.00 0.00 0.00 3.62
312 317 4.963953 CGAACAGTTCTCAAATGTTGTGAC 59.036 41.667 11.60 0.00 37.29 3.67
512 535 7.780271 AGAAACCTTCTGTCTGGTTCTATTTTT 59.220 33.333 0.00 0.00 44.83 1.94
517 540 6.989155 TTAGAAACCTTCTGTCTGGTTCTA 57.011 37.500 0.00 0.00 44.83 2.10
518 541 5.888982 TTAGAAACCTTCTGTCTGGTTCT 57.111 39.130 0.00 0.00 44.83 3.01
519 542 6.238676 GGTTTTAGAAACCTTCTGTCTGGTTC 60.239 42.308 13.83 0.00 44.83 3.62
522 545 4.213482 CGGTTTTAGAAACCTTCTGTCTGG 59.787 45.833 17.62 0.00 40.94 3.86
524 547 3.813724 GCGGTTTTAGAAACCTTCTGTCT 59.186 43.478 17.62 0.00 40.94 3.41
526 549 3.813724 GAGCGGTTTTAGAAACCTTCTGT 59.186 43.478 17.62 1.44 40.94 3.41
527 550 3.188667 GGAGCGGTTTTAGAAACCTTCTG 59.811 47.826 17.62 6.09 40.94 3.02
528 551 3.072622 AGGAGCGGTTTTAGAAACCTTCT 59.927 43.478 17.62 14.28 43.72 2.85
530 553 3.503800 AGGAGCGGTTTTAGAAACCTT 57.496 42.857 17.62 8.13 38.15 3.50
629 656 3.062234 CGGTTTGCGAATCTTCTTCTACC 59.938 47.826 0.00 0.00 0.00 3.18
631 658 2.671396 GCGGTTTGCGAATCTTCTTCTA 59.329 45.455 0.00 0.00 0.00 2.10
644 687 2.661537 GCCCAACAAGCGGTTTGC 60.662 61.111 4.38 0.00 46.98 3.68
645 688 2.028925 GGCCCAACAAGCGGTTTG 59.971 61.111 0.00 2.84 37.72 2.93
646 689 3.601685 CGGCCCAACAAGCGGTTT 61.602 61.111 0.00 0.00 37.72 3.27
647 690 4.572571 TCGGCCCAACAAGCGGTT 62.573 61.111 0.00 0.00 41.47 4.44
651 694 1.508808 TTAACGTCGGCCCAACAAGC 61.509 55.000 0.00 0.00 0.00 4.01
652 695 0.515564 CTTAACGTCGGCCCAACAAG 59.484 55.000 0.00 0.00 0.00 3.16
653 696 1.508808 GCTTAACGTCGGCCCAACAA 61.509 55.000 0.00 0.00 0.00 2.83
654 697 1.962306 GCTTAACGTCGGCCCAACA 60.962 57.895 0.00 0.00 0.00 3.33
655 698 1.232621 AAGCTTAACGTCGGCCCAAC 61.233 55.000 0.00 0.00 0.00 3.77
666 709 4.644685 TGAAATGCTATCCCCAAGCTTAAC 59.355 41.667 0.00 0.00 40.73 2.01
667 710 4.865905 TGAAATGCTATCCCCAAGCTTAA 58.134 39.130 0.00 0.00 40.73 1.85
689 1767 3.377172 ACTCGTTGCACAAGCTAAAACTT 59.623 39.130 0.00 0.00 42.74 2.66
691 1769 3.334272 ACTCGTTGCACAAGCTAAAAC 57.666 42.857 0.00 0.00 42.74 2.43
692 1770 3.625764 AGAACTCGTTGCACAAGCTAAAA 59.374 39.130 0.00 0.00 42.74 1.52
696 1774 1.668419 AAGAACTCGTTGCACAAGCT 58.332 45.000 0.00 0.00 42.74 3.74
786 1864 7.285401 CACCCTTGGTTGTAGCTTAATATTGAT 59.715 37.037 0.00 0.00 31.02 2.57
831 1921 6.183359 GCGAGAAAAAGTTAGCCGTAAATTTG 60.183 38.462 0.00 0.00 36.72 2.32
850 1940 2.636412 CGGGACTGGACTGCGAGAA 61.636 63.158 0.00 0.00 0.00 2.87
851 1941 3.062466 CGGGACTGGACTGCGAGA 61.062 66.667 0.00 0.00 0.00 4.04
882 1972 4.174762 GAGAAGAAGGCGGTTAACTAGTG 58.825 47.826 5.42 0.00 0.00 2.74
896 1986 1.125748 CTGTTCGCGCTTGAGAAGAAG 59.874 52.381 5.56 0.00 31.80 2.85
995 2085 2.570302 AGGAGGCGTAGTAACATTGGTT 59.430 45.455 0.00 0.00 41.06 3.67
1060 2150 1.810030 GAAGGACACGGGCATCGAC 60.810 63.158 5.71 0.00 42.43 4.20
1073 2163 2.360423 GGGAGGAAGATAGGGTGAAGGA 60.360 54.545 0.00 0.00 0.00 3.36
1074 2164 2.050918 GGGAGGAAGATAGGGTGAAGG 58.949 57.143 0.00 0.00 0.00 3.46
1075 2165 2.050918 GGGGAGGAAGATAGGGTGAAG 58.949 57.143 0.00 0.00 0.00 3.02
1077 2167 1.330155 AGGGGAGGAAGATAGGGTGA 58.670 55.000 0.00 0.00 0.00 4.02
1132 2222 4.659002 GAAGCATTCTTCGCAGCG 57.341 55.556 9.06 9.06 43.23 5.18
1191 2287 2.021584 CTGCAGAGCACGCACGTTA 61.022 57.895 8.42 0.00 35.08 3.18
1237 2333 1.500108 CACGCACAAATGGCAAACAT 58.500 45.000 0.00 0.00 43.07 2.71
1241 2337 2.354422 CGCACGCACAAATGGCAA 60.354 55.556 0.00 0.00 0.00 4.52
1372 2468 4.194720 GTCGAGCCGCATCTCCGT 62.195 66.667 0.00 0.00 0.00 4.69
1700 2796 0.041576 GAAACGTCAACCGGAAGCAC 60.042 55.000 9.46 0.00 42.24 4.40
1701 2797 0.179067 AGAAACGTCAACCGGAAGCA 60.179 50.000 9.46 0.00 42.24 3.91
1756 2884 7.238571 ACTAAAATACACGTAATGCGGAAAAG 58.761 34.615 0.00 0.00 46.52 2.27
1853 2982 3.598019 ATAGACCGGCGTCAACTAAAA 57.402 42.857 6.01 0.00 41.87 1.52
1883 3032 5.183228 TCCATTCCGACAAATCTAACTTCC 58.817 41.667 0.00 0.00 0.00 3.46
1891 3043 6.442513 AAAGAAGATCCATTCCGACAAATC 57.557 37.500 0.00 0.00 0.00 2.17
1917 3070 1.873591 GGCCATGTATAAGCTGAACCG 59.126 52.381 0.00 0.00 0.00 4.44
1918 3071 2.930950 TGGCCATGTATAAGCTGAACC 58.069 47.619 0.00 0.00 0.00 3.62
2004 3157 1.402968 GGCTGGTGTTGCATGAGTATG 59.597 52.381 0.00 0.00 37.36 2.39
2027 3197 4.037021 TCCGACAAGTTATATACAACGCG 58.963 43.478 3.53 3.53 33.50 6.01
2082 3550 2.010817 CGCACGCTGAACCAAAAGC 61.011 57.895 0.00 0.00 36.03 3.51
2083 3551 2.010817 GCGCACGCTGAACCAAAAG 61.011 57.895 7.96 0.00 38.26 2.27
2084 3552 2.025441 GCGCACGCTGAACCAAAA 59.975 55.556 7.96 0.00 38.26 2.44
2094 3562 2.401195 GAGATTTGGAGCGCACGC 59.599 61.111 11.47 6.99 42.33 5.34
2095 3563 1.424493 GAGGAGATTTGGAGCGCACG 61.424 60.000 11.47 0.00 0.00 5.34
2100 3568 0.537188 TCACCGAGGAGATTTGGAGC 59.463 55.000 0.00 0.00 0.00 4.70
2101 3569 2.593346 CTCACCGAGGAGATTTGGAG 57.407 55.000 0.00 0.00 37.05 3.86
2116 3584 1.806568 CTGCGAGTCCTCTCCTCAC 59.193 63.158 0.00 0.00 37.40 3.51
2120 3588 4.863925 GCGCTGCGAGTCCTCTCC 62.864 72.222 28.07 0.00 37.40 3.71
2121 3589 3.349481 AAGCGCTGCGAGTCCTCTC 62.349 63.158 28.07 4.97 37.35 3.20
2122 3590 3.349481 GAAGCGCTGCGAGTCCTCT 62.349 63.158 28.07 9.13 0.00 3.69
2191 3972 2.753043 AGCAAGGGCAAGATGGCG 60.753 61.111 0.00 0.00 44.78 5.69
2236 4021 1.834822 CTTGAAACCCGGCCCCAAA 60.835 57.895 0.00 0.00 0.00 3.28
2242 4027 2.282180 TCTGGCTTGAAACCCGGC 60.282 61.111 0.00 0.00 0.00 6.13
2243 4028 2.335712 GCTCTGGCTTGAAACCCGG 61.336 63.158 0.00 0.00 35.22 5.73
2244 4029 3.267974 GCTCTGGCTTGAAACCCG 58.732 61.111 0.00 0.00 35.22 5.28
2337 4122 3.305335 CCTGTAAATTCTGCAAAGCCGTT 60.305 43.478 0.00 0.00 0.00 4.44
2385 4170 5.147330 ACTGTTTAGACATCCAATCGTGA 57.853 39.130 0.00 0.00 34.72 4.35
2420 4205 0.447801 GCGGCTAATGTTGACACCTG 59.552 55.000 0.00 0.00 0.00 4.00
2424 4209 1.093972 CCATGCGGCTAATGTTGACA 58.906 50.000 0.00 0.00 0.00 3.58
2425 4210 1.331756 CTCCATGCGGCTAATGTTGAC 59.668 52.381 0.00 0.00 0.00 3.18
2426 4211 1.667236 CTCCATGCGGCTAATGTTGA 58.333 50.000 0.00 0.00 0.00 3.18
2427 4212 0.664761 CCTCCATGCGGCTAATGTTG 59.335 55.000 0.00 0.00 0.00 3.33
2428 4213 0.546122 TCCTCCATGCGGCTAATGTT 59.454 50.000 0.00 0.00 0.00 2.71
2429 4214 0.767375 ATCCTCCATGCGGCTAATGT 59.233 50.000 0.00 0.00 0.00 2.71
2519 4425 0.178068 TGGGTTGAAGCTATCGAGGC 59.822 55.000 5.19 5.19 0.00 4.70
2520 4426 2.678336 GTTTGGGTTGAAGCTATCGAGG 59.322 50.000 0.00 0.00 0.00 4.63
2521 4427 3.600388 AGTTTGGGTTGAAGCTATCGAG 58.400 45.455 0.00 0.00 0.00 4.04
2523 4429 3.751175 TGAAGTTTGGGTTGAAGCTATCG 59.249 43.478 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.