Multiple sequence alignment - TraesCS3B01G285600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G285600 chr3B 100.000 4593 0 0 1 4593 457199581 457204173 0.000000e+00 8482.0
1 TraesCS3B01G285600 chr3D 95.610 1754 53 13 540 2291 355990254 355991985 0.000000e+00 2791.0
2 TraesCS3B01G285600 chr3D 90.391 947 55 17 3682 4593 355993338 355994283 0.000000e+00 1212.0
3 TraesCS3B01G285600 chr3D 97.429 700 18 0 2353 3052 355992011 355992710 0.000000e+00 1194.0
4 TraesCS3B01G285600 chr3D 91.584 404 29 2 3249 3652 355992870 355993268 1.870000e-153 553.0
5 TraesCS3B01G285600 chr3D 84.615 117 7 5 3046 3160 355992736 355992843 6.280000e-19 106.0
6 TraesCS3B01G285600 chr3A 95.088 1771 50 15 536 2291 474973587 474975335 0.000000e+00 2754.0
7 TraesCS3B01G285600 chr3A 91.508 1366 70 21 3249 4593 474976227 474977567 0.000000e+00 1838.0
8 TraesCS3B01G285600 chr3A 95.854 820 22 5 2353 3160 474975362 474976181 0.000000e+00 1315.0
9 TraesCS3B01G285600 chr3A 83.491 212 18 8 1 196 474973089 474973299 1.020000e-41 182.0
10 TraesCS3B01G285600 chr2B 80.576 139 23 2 290 424 54006680 54006818 2.260000e-18 104.0
11 TraesCS3B01G285600 chr5D 79.121 91 18 1 1659 1749 363177930 363178019 1.380000e-05 62.1
12 TraesCS3B01G285600 chr5D 79.121 91 18 1 1659 1749 363340174 363340263 1.380000e-05 62.1
13 TraesCS3B01G285600 chr5D 79.121 91 18 1 1659 1749 363976210 363976299 1.380000e-05 62.1
14 TraesCS3B01G285600 chr5B 79.121 91 18 1 1659 1749 429727566 429727655 1.380000e-05 62.1
15 TraesCS3B01G285600 chr5B 79.121 91 18 1 1659 1749 429820592 429820681 1.380000e-05 62.1
16 TraesCS3B01G285600 chr1B 92.683 41 3 0 1244 1284 445428893 445428853 4.960000e-05 60.2
17 TraesCS3B01G285600 chr1A 90.244 41 4 0 1244 1284 427813293 427813253 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G285600 chr3B 457199581 457204173 4592 False 8482.00 8482 100.00000 1 4593 1 chr3B.!!$F1 4592
1 TraesCS3B01G285600 chr3D 355990254 355994283 4029 False 1171.20 2791 91.92580 540 4593 5 chr3D.!!$F1 4053
2 TraesCS3B01G285600 chr3A 474973089 474977567 4478 False 1522.25 2754 91.48525 1 4593 4 chr3A.!!$F1 4592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 260 0.104304 ATGAGGGACGGTTCGTATGC 59.896 55.0 0.0 0.0 41.37 3.14 F
524 542 0.108992 TTAGCGAGGCGTACCAACTG 60.109 55.0 0.0 0.0 39.06 3.16 F
2294 2415 0.313043 AACGTTCCTCATCGTGTCGT 59.687 50.0 0.0 0.0 40.19 4.34 F
2295 2416 0.386858 ACGTTCCTCATCGTGTCGTG 60.387 55.0 0.0 0.0 38.85 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 1987 0.039764 TGATGAGGTGGTCGAGGAGT 59.960 55.0 0.00 0.00 0.00 3.85 R
2339 2461 0.460284 GACCGATCGGACATGCAAGT 60.460 55.0 39.55 14.76 38.96 3.16 R
3128 3292 0.032515 TCTGGTCCAGCCCGATAAGA 60.033 55.0 14.64 0.00 36.04 2.10 R
3823 4060 0.176910 TCAGAGCGAACAACACCACA 59.823 50.0 0.00 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.799755 GTGCCGTTGCCCGACATC 61.800 66.667 0.00 0.00 39.56 3.06
42 43 2.740714 GCCCGACATCGTCTGTTGC 61.741 63.158 0.00 0.00 38.54 4.17
54 55 1.604278 GTCTGTTGCCTTTGGAGTCAC 59.396 52.381 0.00 0.00 0.00 3.67
56 57 0.179234 TGTTGCCTTTGGAGTCACGA 59.821 50.000 0.00 0.00 0.00 4.35
83 84 2.292794 TACAACATCTCCTCGGCGGC 62.293 60.000 7.21 0.00 0.00 6.53
106 107 2.766263 ACATCTTCCGTGAAGCCATCTA 59.234 45.455 8.32 0.00 39.29 1.98
111 112 3.238788 TCCGTGAAGCCATCTAGGATA 57.761 47.619 0.00 0.00 41.22 2.59
151 168 0.244178 GCCGACGACTTCTTCCTTCT 59.756 55.000 0.00 0.00 0.00 2.85
155 172 2.474856 CGACGACTTCTTCCTTCTCTCG 60.475 54.545 0.00 0.00 0.00 4.04
156 173 2.743126 GACGACTTCTTCCTTCTCTCGA 59.257 50.000 0.00 0.00 0.00 4.04
173 190 1.210931 GACCACGACGGACGAATCA 59.789 57.895 6.90 0.00 45.77 2.57
196 213 2.426023 GGTTGCCAGACCTGACGT 59.574 61.111 0.00 0.00 36.73 4.34
197 214 1.961277 GGTTGCCAGACCTGACGTG 60.961 63.158 0.00 0.00 36.73 4.49
198 215 2.280797 TTGCCAGACCTGACGTGC 60.281 61.111 0.00 0.00 0.00 5.34
199 216 3.825160 TTGCCAGACCTGACGTGCC 62.825 63.158 0.00 0.00 0.00 5.01
201 218 3.625897 CCAGACCTGACGTGCCCA 61.626 66.667 0.00 0.00 0.00 5.36
202 219 2.425592 CAGACCTGACGTGCCCAA 59.574 61.111 0.00 0.00 0.00 4.12
203 220 1.227823 CAGACCTGACGTGCCCAAA 60.228 57.895 0.00 0.00 0.00 3.28
204 221 0.606401 CAGACCTGACGTGCCCAAAT 60.606 55.000 0.00 0.00 0.00 2.32
205 222 0.321653 AGACCTGACGTGCCCAAATC 60.322 55.000 0.00 0.00 0.00 2.17
206 223 0.321653 GACCTGACGTGCCCAAATCT 60.322 55.000 0.00 0.00 0.00 2.40
207 224 0.981183 ACCTGACGTGCCCAAATCTA 59.019 50.000 0.00 0.00 0.00 1.98
208 225 1.559682 ACCTGACGTGCCCAAATCTAT 59.440 47.619 0.00 0.00 0.00 1.98
209 226 1.942657 CCTGACGTGCCCAAATCTATG 59.057 52.381 0.00 0.00 0.00 2.23
210 227 2.632377 CTGACGTGCCCAAATCTATGT 58.368 47.619 0.00 0.00 0.00 2.29
211 228 2.609459 CTGACGTGCCCAAATCTATGTC 59.391 50.000 0.00 0.00 0.00 3.06
212 229 1.940613 GACGTGCCCAAATCTATGTCC 59.059 52.381 0.00 0.00 0.00 4.02
213 230 1.559682 ACGTGCCCAAATCTATGTCCT 59.440 47.619 0.00 0.00 0.00 3.85
214 231 2.213499 CGTGCCCAAATCTATGTCCTC 58.787 52.381 0.00 0.00 0.00 3.71
215 232 2.213499 GTGCCCAAATCTATGTCCTCG 58.787 52.381 0.00 0.00 0.00 4.63
216 233 1.837439 TGCCCAAATCTATGTCCTCGT 59.163 47.619 0.00 0.00 0.00 4.18
217 234 2.158957 TGCCCAAATCTATGTCCTCGTC 60.159 50.000 0.00 0.00 0.00 4.20
218 235 2.158957 GCCCAAATCTATGTCCTCGTCA 60.159 50.000 0.00 0.00 0.00 4.35
219 236 3.458189 CCCAAATCTATGTCCTCGTCAC 58.542 50.000 0.00 0.00 0.00 3.67
220 237 3.118775 CCCAAATCTATGTCCTCGTCACA 60.119 47.826 0.00 0.00 0.00 3.58
221 238 4.115516 CCAAATCTATGTCCTCGTCACAG 58.884 47.826 0.00 0.00 0.00 3.66
222 239 4.142160 CCAAATCTATGTCCTCGTCACAGA 60.142 45.833 0.00 0.00 0.00 3.41
223 240 5.452496 CCAAATCTATGTCCTCGTCACAGAT 60.452 44.000 0.00 0.00 0.00 2.90
224 241 6.239036 CCAAATCTATGTCCTCGTCACAGATA 60.239 42.308 0.00 0.00 0.00 1.98
225 242 7.374272 CAAATCTATGTCCTCGTCACAGATAT 58.626 38.462 0.00 0.00 0.00 1.63
226 243 5.948992 TCTATGTCCTCGTCACAGATATG 57.051 43.478 0.00 0.00 0.00 1.78
227 244 5.621193 TCTATGTCCTCGTCACAGATATGA 58.379 41.667 0.00 0.00 0.00 2.15
228 245 4.844998 ATGTCCTCGTCACAGATATGAG 57.155 45.455 0.00 0.00 0.00 2.90
229 246 2.952310 TGTCCTCGTCACAGATATGAGG 59.048 50.000 5.19 5.19 46.06 3.86
230 247 2.294791 GTCCTCGTCACAGATATGAGGG 59.705 54.545 10.62 0.00 45.03 4.30
231 248 2.174854 TCCTCGTCACAGATATGAGGGA 59.825 50.000 10.62 0.00 45.03 4.20
232 249 2.294791 CCTCGTCACAGATATGAGGGAC 59.705 54.545 0.00 0.00 42.00 4.46
233 250 1.947456 TCGTCACAGATATGAGGGACG 59.053 52.381 18.07 18.07 46.66 4.79
234 251 1.001268 CGTCACAGATATGAGGGACGG 60.001 57.143 16.92 3.56 42.97 4.79
235 252 2.032620 GTCACAGATATGAGGGACGGT 58.967 52.381 0.00 0.00 0.00 4.83
236 253 2.431057 GTCACAGATATGAGGGACGGTT 59.569 50.000 0.00 0.00 0.00 4.44
237 254 2.693591 TCACAGATATGAGGGACGGTTC 59.306 50.000 0.00 0.00 0.00 3.62
238 255 1.681793 ACAGATATGAGGGACGGTTCG 59.318 52.381 0.00 0.00 0.00 3.95
239 256 1.681793 CAGATATGAGGGACGGTTCGT 59.318 52.381 0.00 0.00 45.10 3.85
240 257 2.882761 CAGATATGAGGGACGGTTCGTA 59.117 50.000 0.00 0.00 41.37 3.43
241 258 3.506455 CAGATATGAGGGACGGTTCGTAT 59.494 47.826 0.00 0.00 41.37 3.06
242 259 3.506455 AGATATGAGGGACGGTTCGTATG 59.494 47.826 0.00 0.00 41.37 2.39
243 260 0.104304 ATGAGGGACGGTTCGTATGC 59.896 55.000 0.00 0.00 41.37 3.14
244 261 1.588139 GAGGGACGGTTCGTATGCG 60.588 63.158 0.00 0.00 41.37 4.73
245 262 2.182537 GGGACGGTTCGTATGCGT 59.817 61.111 2.37 0.00 41.37 5.24
246 263 1.875364 GGGACGGTTCGTATGCGTC 60.875 63.158 2.37 0.00 41.37 5.19
247 264 1.875364 GGACGGTTCGTATGCGTCC 60.875 63.158 14.29 14.29 41.37 4.79
249 266 3.613702 CGGTTCGTATGCGTCCGC 61.614 66.667 21.98 4.42 43.70 5.54
250 267 3.613702 GGTTCGTATGCGTCCGCG 61.614 66.667 7.22 0.00 45.51 6.46
251 268 3.613702 GTTCGTATGCGTCCGCGG 61.614 66.667 22.12 22.12 45.51 6.46
252 269 3.813143 TTCGTATGCGTCCGCGGA 61.813 61.111 27.28 27.28 45.51 5.54
253 270 4.541482 TCGTATGCGTCCGCGGAC 62.541 66.667 41.75 41.75 45.51 4.79
261 278 2.641559 GTCCGCGGACGTATAGGG 59.358 66.667 39.77 3.67 37.70 3.53
262 279 2.595463 TCCGCGGACGTATAGGGG 60.595 66.667 27.28 12.32 37.70 4.79
263 280 4.353437 CCGCGGACGTATAGGGGC 62.353 72.222 24.07 0.00 37.70 5.80
264 281 4.695231 CGCGGACGTATAGGGGCG 62.695 72.222 0.00 11.41 37.56 6.13
265 282 4.353437 GCGGACGTATAGGGGCGG 62.353 72.222 0.00 0.00 0.00 6.13
266 283 2.595463 CGGACGTATAGGGGCGGA 60.595 66.667 0.00 0.00 0.00 5.54
267 284 1.975407 CGGACGTATAGGGGCGGAT 60.975 63.158 0.00 0.00 0.00 4.18
268 285 1.530013 CGGACGTATAGGGGCGGATT 61.530 60.000 0.00 0.00 0.00 3.01
269 286 0.683412 GGACGTATAGGGGCGGATTT 59.317 55.000 0.00 0.00 0.00 2.17
270 287 1.607251 GGACGTATAGGGGCGGATTTG 60.607 57.143 0.00 0.00 0.00 2.32
271 288 0.250166 ACGTATAGGGGCGGATTTGC 60.250 55.000 0.00 0.00 0.00 3.68
281 298 0.378610 GCGGATTTGCCAAGTCTAGC 59.621 55.000 0.00 3.14 35.94 3.42
282 299 2.014068 GCGGATTTGCCAAGTCTAGCT 61.014 52.381 11.37 0.00 35.94 3.32
283 300 2.741878 GCGGATTTGCCAAGTCTAGCTA 60.742 50.000 11.37 0.00 35.94 3.32
284 301 3.733337 CGGATTTGCCAAGTCTAGCTAT 58.267 45.455 0.00 0.00 35.94 2.97
285 302 4.799586 GCGGATTTGCCAAGTCTAGCTATA 60.800 45.833 11.37 0.00 35.94 1.31
286 303 4.926238 CGGATTTGCCAAGTCTAGCTATAG 59.074 45.833 0.00 0.00 35.94 1.31
287 304 5.279006 CGGATTTGCCAAGTCTAGCTATAGA 60.279 44.000 3.21 0.00 34.09 1.98
288 305 6.573289 CGGATTTGCCAAGTCTAGCTATAGAT 60.573 42.308 3.21 0.00 37.11 1.98
289 306 6.593382 GGATTTGCCAAGTCTAGCTATAGATG 59.407 42.308 3.21 0.00 37.19 2.90
290 307 4.527509 TGCCAAGTCTAGCTATAGATGC 57.472 45.455 3.21 0.00 40.16 3.91
291 308 4.155709 TGCCAAGTCTAGCTATAGATGCT 58.844 43.478 3.21 0.00 40.16 3.79
292 309 4.219507 TGCCAAGTCTAGCTATAGATGCTC 59.780 45.833 3.21 0.00 40.16 4.26
293 310 4.462483 GCCAAGTCTAGCTATAGATGCTCT 59.538 45.833 3.21 0.00 40.16 4.09
294 311 5.650266 GCCAAGTCTAGCTATAGATGCTCTA 59.350 44.000 3.21 0.00 40.16 2.43
295 312 6.151985 GCCAAGTCTAGCTATAGATGCTCTAA 59.848 42.308 3.21 0.00 40.16 2.10
296 313 7.147915 GCCAAGTCTAGCTATAGATGCTCTAAT 60.148 40.741 3.21 0.00 40.16 1.73
297 314 8.748412 CCAAGTCTAGCTATAGATGCTCTAATT 58.252 37.037 3.21 0.00 40.16 1.40
309 326 6.529220 AGATGCTCTAATTAAGTGATGGGAC 58.471 40.000 0.00 0.00 0.00 4.46
312 329 4.632153 CTCTAATTAAGTGATGGGACGGG 58.368 47.826 0.00 0.00 0.00 5.28
318 335 3.407967 TGATGGGACGGGAAGGGC 61.408 66.667 0.00 0.00 0.00 5.19
324 341 2.355115 GACGGGAAGGGCAATGGT 59.645 61.111 0.00 0.00 0.00 3.55
339 356 4.265073 GCAATGGTGTAGATGGAAAGACT 58.735 43.478 0.00 0.00 0.00 3.24
340 357 4.095483 GCAATGGTGTAGATGGAAAGACTG 59.905 45.833 0.00 0.00 0.00 3.51
341 358 3.981071 TGGTGTAGATGGAAAGACTGG 57.019 47.619 0.00 0.00 0.00 4.00
342 359 2.027192 TGGTGTAGATGGAAAGACTGGC 60.027 50.000 0.00 0.00 0.00 4.85
343 360 2.237392 GGTGTAGATGGAAAGACTGGCT 59.763 50.000 0.00 0.00 0.00 4.75
344 361 3.265791 GTGTAGATGGAAAGACTGGCTG 58.734 50.000 0.00 0.00 0.00 4.85
345 362 2.284190 GTAGATGGAAAGACTGGCTGC 58.716 52.381 0.00 0.00 0.00 5.25
346 363 0.392193 AGATGGAAAGACTGGCTGCG 60.392 55.000 0.00 0.00 0.00 5.18
347 364 1.372087 GATGGAAAGACTGGCTGCGG 61.372 60.000 0.00 0.00 0.00 5.69
348 365 3.435186 GGAAAGACTGGCTGCGGC 61.435 66.667 9.72 9.72 37.82 6.53
349 366 3.793144 GAAAGACTGGCTGCGGCG 61.793 66.667 12.29 0.51 39.81 6.46
359 376 4.925576 CTGCGGCGGCCTAGTACG 62.926 72.222 18.34 3.42 38.85 3.67
365 382 2.412112 CGGCCTAGTACGCAGACC 59.588 66.667 0.00 0.00 0.00 3.85
366 383 2.412323 CGGCCTAGTACGCAGACCA 61.412 63.158 0.00 0.00 0.00 4.02
367 384 1.735376 CGGCCTAGTACGCAGACCAT 61.735 60.000 0.00 0.00 0.00 3.55
368 385 0.464452 GGCCTAGTACGCAGACCATT 59.536 55.000 0.00 0.00 0.00 3.16
383 400 6.094881 CGCAGACCATTAAGGGAAAATTTAGA 59.905 38.462 14.22 0.00 43.89 2.10
384 401 7.362574 CGCAGACCATTAAGGGAAAATTTAGAA 60.363 37.037 14.22 0.00 43.89 2.10
407 424 9.601217 AGAAAAAGTTATACGCAGACTATTGAT 57.399 29.630 0.00 0.00 0.00 2.57
408 425 9.638300 GAAAAAGTTATACGCAGACTATTGATG 57.362 33.333 0.00 0.00 0.00 3.07
410 427 8.942338 AAAGTTATACGCAGACTATTGATGAA 57.058 30.769 0.00 0.00 0.00 2.57
484 501 2.238521 CACATAGTTTGGGCACACCTT 58.761 47.619 0.00 0.00 41.11 3.50
485 502 2.627699 CACATAGTTTGGGCACACCTTT 59.372 45.455 0.00 0.00 41.11 3.11
495 513 5.559148 TGGGCACACCTTTAATCATTTTT 57.441 34.783 0.00 0.00 41.11 1.94
496 514 6.672266 TGGGCACACCTTTAATCATTTTTA 57.328 33.333 0.00 0.00 41.11 1.52
497 515 6.459923 TGGGCACACCTTTAATCATTTTTAC 58.540 36.000 0.00 0.00 41.11 2.01
499 517 6.153756 GGCACACCTTTAATCATTTTTACGT 58.846 36.000 0.00 0.00 0.00 3.57
513 531 0.457853 TTACGTGCAGCTTAGCGAGG 60.458 55.000 0.00 0.00 37.31 4.63
516 534 4.069232 TGCAGCTTAGCGAGGCGT 62.069 61.111 12.18 0.00 37.31 5.68
518 536 2.231618 GCAGCTTAGCGAGGCGTAC 61.232 63.158 0.00 0.00 0.00 3.67
519 537 1.589196 CAGCTTAGCGAGGCGTACC 60.589 63.158 0.00 0.00 0.00 3.34
520 538 2.050350 AGCTTAGCGAGGCGTACCA 61.050 57.895 0.00 0.00 39.06 3.25
521 539 1.153706 GCTTAGCGAGGCGTACCAA 60.154 57.895 0.00 0.00 39.06 3.67
522 540 1.419107 GCTTAGCGAGGCGTACCAAC 61.419 60.000 0.00 0.00 39.06 3.77
523 541 0.172803 CTTAGCGAGGCGTACCAACT 59.827 55.000 0.00 0.00 39.06 3.16
524 542 0.108992 TTAGCGAGGCGTACCAACTG 60.109 55.000 0.00 0.00 39.06 3.16
525 543 2.552585 TAGCGAGGCGTACCAACTGC 62.553 60.000 0.00 0.00 39.06 4.40
526 544 2.261671 CGAGGCGTACCAACTGCT 59.738 61.111 0.00 0.00 39.06 4.24
528 546 1.292223 GAGGCGTACCAACTGCTCA 59.708 57.895 0.00 0.00 39.06 4.26
530 548 1.004918 GGCGTACCAACTGCTCAGT 60.005 57.895 0.00 0.00 44.94 3.41
532 550 1.134788 GGCGTACCAACTGCTCAGTAT 60.135 52.381 2.62 0.00 41.58 2.12
533 551 1.927174 GCGTACCAACTGCTCAGTATG 59.073 52.381 2.62 4.55 41.58 2.39
534 552 2.674177 GCGTACCAACTGCTCAGTATGT 60.674 50.000 2.62 6.32 41.58 2.29
535 553 2.923655 CGTACCAACTGCTCAGTATGTG 59.076 50.000 2.62 0.00 41.58 3.21
536 554 3.366985 CGTACCAACTGCTCAGTATGTGA 60.367 47.826 2.62 0.00 41.58 3.58
563 669 7.804843 TGTTTCACGGTAATTCCTCTTTTTA 57.195 32.000 0.00 0.00 0.00 1.52
564 670 7.867752 TGTTTCACGGTAATTCCTCTTTTTAG 58.132 34.615 0.00 0.00 0.00 1.85
601 707 4.814771 CGGTAATTCCCAACTTCCAGTATC 59.185 45.833 0.00 0.00 0.00 2.24
707 823 2.417787 CCTCCAAGCAAAAATAGCTGCC 60.418 50.000 0.00 0.00 42.53 4.85
715 831 3.191371 GCAAAAATAGCTGCCAGTACACT 59.809 43.478 0.00 0.00 32.18 3.55
740 856 3.769739 TGTGTATGAGGCCATGATACC 57.230 47.619 5.01 3.46 34.31 2.73
820 936 2.159226 ACGTTCACTCCGATGAATCTCC 60.159 50.000 0.97 0.00 40.60 3.71
919 1036 4.082463 CCAATAAGAAGGCCAACGCTTTAA 60.082 41.667 5.01 0.00 33.84 1.52
1143 1263 1.624336 TCACCAGCCTTACGTACACT 58.376 50.000 0.00 0.00 0.00 3.55
1164 1284 2.032681 GTCAAGAAGCAGCGGGGT 59.967 61.111 0.00 0.00 0.00 4.95
1374 1494 1.344942 GCGTCATCAAGCGTTCGTCT 61.345 55.000 0.00 0.00 0.00 4.18
1530 1650 1.135083 CAGCTCGGTCTCACGGTAATT 60.135 52.381 0.00 0.00 0.00 1.40
1531 1651 2.098607 CAGCTCGGTCTCACGGTAATTA 59.901 50.000 0.00 0.00 0.00 1.40
1532 1652 2.756760 AGCTCGGTCTCACGGTAATTAA 59.243 45.455 0.00 0.00 0.00 1.40
1546 1666 4.604843 GTAATTAACCAAGCACGGTACC 57.395 45.455 0.16 0.16 38.76 3.34
1547 1667 3.428413 AATTAACCAAGCACGGTACCT 57.572 42.857 10.90 0.00 38.76 3.08
1549 1669 1.050204 TAACCAAGCACGGTACCTGT 58.950 50.000 10.90 6.96 38.76 4.00
1550 1670 1.050204 AACCAAGCACGGTACCTGTA 58.950 50.000 10.90 0.00 38.76 2.74
1551 1671 1.272807 ACCAAGCACGGTACCTGTAT 58.727 50.000 10.90 0.00 37.57 2.29
1552 1672 1.626825 ACCAAGCACGGTACCTGTATT 59.373 47.619 10.90 5.69 37.57 1.89
1554 1674 3.078837 CCAAGCACGGTACCTGTATTTT 58.921 45.455 10.90 2.90 0.00 1.82
1555 1675 4.255301 CCAAGCACGGTACCTGTATTTTA 58.745 43.478 10.90 0.00 0.00 1.52
1556 1676 4.093850 CCAAGCACGGTACCTGTATTTTAC 59.906 45.833 10.90 0.00 0.00 2.01
1558 1678 5.156608 AGCACGGTACCTGTATTTTACTT 57.843 39.130 10.90 0.00 0.00 2.24
1559 1679 5.554070 AGCACGGTACCTGTATTTTACTTT 58.446 37.500 10.90 0.00 0.00 2.66
1560 1680 5.410439 AGCACGGTACCTGTATTTTACTTTG 59.590 40.000 10.90 0.00 0.00 2.77
1561 1681 5.409214 GCACGGTACCTGTATTTTACTTTGA 59.591 40.000 10.90 0.00 0.00 2.69
1562 1682 6.619232 GCACGGTACCTGTATTTTACTTTGAC 60.619 42.308 10.90 0.00 0.00 3.18
1563 1683 6.424509 CACGGTACCTGTATTTTACTTTGACA 59.575 38.462 10.90 0.00 0.00 3.58
1564 1684 6.991531 ACGGTACCTGTATTTTACTTTGACAA 59.008 34.615 10.90 0.00 0.00 3.18
1565 1685 7.498570 ACGGTACCTGTATTTTACTTTGACAAA 59.501 33.333 10.90 0.00 0.00 2.83
1566 1686 8.344098 CGGTACCTGTATTTTACTTTGACAAAA 58.656 33.333 10.90 0.00 0.00 2.44
1567 1687 9.673454 GGTACCTGTATTTTACTTTGACAAAAG 57.327 33.333 4.06 0.00 46.93 2.27
1613 1734 4.726416 ACGGAGTGTATACGTGTTAACAG 58.274 43.478 8.98 6.06 42.51 3.16
1831 1952 3.941188 CAGGGAGCACCGTGGTGT 61.941 66.667 19.56 7.28 46.90 4.16
1866 1987 3.754530 TCGTCGCGGATCCTGCAA 61.755 61.111 22.50 7.15 0.00 4.08
2055 2176 4.309950 AACGCCCTCGCCGAGTTT 62.310 61.111 13.83 0.00 39.84 2.66
2291 2412 2.289547 CCAAAAACGTTCCTCATCGTGT 59.710 45.455 0.00 0.00 40.19 4.49
2292 2413 3.541711 CAAAAACGTTCCTCATCGTGTC 58.458 45.455 0.00 0.00 40.19 3.67
2293 2414 1.415374 AAACGTTCCTCATCGTGTCG 58.585 50.000 0.00 0.00 40.19 4.35
2294 2415 0.313043 AACGTTCCTCATCGTGTCGT 59.687 50.000 0.00 0.00 40.19 4.34
2295 2416 0.386858 ACGTTCCTCATCGTGTCGTG 60.387 55.000 0.00 0.00 38.85 4.35
2296 2417 0.386858 CGTTCCTCATCGTGTCGTGT 60.387 55.000 0.00 0.00 0.00 4.49
2303 2424 3.547868 CCTCATCGTGTCGTGTTATGAAG 59.452 47.826 0.00 0.00 0.00 3.02
2308 2430 5.556355 TCGTGTCGTGTTATGAAGATAGT 57.444 39.130 0.00 0.00 0.00 2.12
2309 2431 6.667007 TCGTGTCGTGTTATGAAGATAGTA 57.333 37.500 0.00 0.00 0.00 1.82
2312 2434 7.011669 TCGTGTCGTGTTATGAAGATAGTATGA 59.988 37.037 0.00 0.00 0.00 2.15
2316 2438 7.531198 GTCGTGTTATGAAGATAGTATGACTCG 59.469 40.741 0.00 0.00 32.37 4.18
2318 2440 7.520131 CGTGTTATGAAGATAGTATGACTCGGT 60.520 40.741 0.00 0.00 0.00 4.69
2319 2441 8.781196 GTGTTATGAAGATAGTATGACTCGGTA 58.219 37.037 0.00 0.00 0.00 4.02
2320 2442 9.000486 TGTTATGAAGATAGTATGACTCGGTAG 58.000 37.037 0.00 0.00 0.00 3.18
2321 2443 5.943706 TGAAGATAGTATGACTCGGTAGC 57.056 43.478 0.00 0.00 0.00 3.58
2322 2444 5.374071 TGAAGATAGTATGACTCGGTAGCA 58.626 41.667 0.00 0.00 0.00 3.49
2323 2445 5.826208 TGAAGATAGTATGACTCGGTAGCAA 59.174 40.000 0.00 0.00 0.00 3.91
2324 2446 5.950758 AGATAGTATGACTCGGTAGCAAG 57.049 43.478 0.00 0.00 0.00 4.01
2325 2447 5.622180 AGATAGTATGACTCGGTAGCAAGA 58.378 41.667 0.00 0.00 0.00 3.02
2326 2448 5.470777 AGATAGTATGACTCGGTAGCAAGAC 59.529 44.000 0.00 0.00 0.00 3.01
2327 2449 3.622630 AGTATGACTCGGTAGCAAGACT 58.377 45.455 0.00 0.00 0.00 3.24
2328 2450 2.949451 ATGACTCGGTAGCAAGACTG 57.051 50.000 0.00 0.00 0.00 3.51
2329 2451 1.617322 TGACTCGGTAGCAAGACTGT 58.383 50.000 0.00 0.00 0.00 3.55
2330 2452 2.786777 TGACTCGGTAGCAAGACTGTA 58.213 47.619 0.00 0.00 0.00 2.74
2331 2453 2.747989 TGACTCGGTAGCAAGACTGTAG 59.252 50.000 0.00 0.00 0.00 2.74
2332 2454 2.748532 GACTCGGTAGCAAGACTGTAGT 59.251 50.000 0.00 0.00 0.00 2.73
2333 2455 3.937706 GACTCGGTAGCAAGACTGTAGTA 59.062 47.826 0.00 0.00 0.00 1.82
2334 2456 3.940221 ACTCGGTAGCAAGACTGTAGTAG 59.060 47.826 0.00 0.00 0.00 2.57
2335 2457 3.940221 CTCGGTAGCAAGACTGTAGTAGT 59.060 47.826 0.00 0.00 44.02 2.73
2336 2458 4.330250 TCGGTAGCAAGACTGTAGTAGTT 58.670 43.478 0.00 0.00 40.53 2.24
2337 2459 4.155462 TCGGTAGCAAGACTGTAGTAGTTG 59.845 45.833 0.00 3.41 40.53 3.16
2338 2460 4.174762 GGTAGCAAGACTGTAGTAGTTGC 58.825 47.826 17.52 17.52 43.23 4.17
2339 2461 4.321750 GGTAGCAAGACTGTAGTAGTTGCA 60.322 45.833 23.08 12.72 44.34 4.08
2340 2462 3.654414 AGCAAGACTGTAGTAGTTGCAC 58.346 45.455 23.08 5.72 44.34 4.57
2341 2463 3.322254 AGCAAGACTGTAGTAGTTGCACT 59.678 43.478 23.08 9.39 44.34 4.40
2342 2464 4.058817 GCAAGACTGTAGTAGTTGCACTT 58.941 43.478 19.17 1.94 42.80 3.16
2343 2465 4.084328 GCAAGACTGTAGTAGTTGCACTTG 60.084 45.833 19.17 12.04 42.80 3.16
2344 2466 3.654414 AGACTGTAGTAGTTGCACTTGC 58.346 45.455 0.00 0.00 40.53 4.01
2367 2489 1.226974 CCGATCGGTCGCATGAACT 60.227 57.895 26.35 0.00 46.32 3.01
2653 2775 2.046988 CGGCTGATGGTGCTGACA 60.047 61.111 0.00 0.00 38.99 3.58
2662 2784 1.126948 TGGTGCTGACAGTGATGGGA 61.127 55.000 3.99 0.00 0.00 4.37
2725 2847 3.443045 GGCATCACCAACCGGCTG 61.443 66.667 0.00 0.00 38.86 4.85
2881 3003 1.518572 GGTGATCACGTACCTGCCG 60.519 63.158 19.33 0.00 34.11 5.69
3048 3170 3.193479 CCAAACTTCATCCTTGGGTAAGC 59.807 47.826 0.00 0.00 36.70 3.09
3057 3179 6.013379 TCATCCTTGGGTAAGCACAATTTTA 58.987 36.000 0.00 0.00 37.39 1.52
3062 3184 6.371271 CCTTGGGTAAGCACAATTTTATTTGG 59.629 38.462 0.00 0.00 37.39 3.28
3109 3268 6.208644 CAAAGCCCAATTACATATCGGAAAG 58.791 40.000 0.00 0.00 0.00 2.62
3128 3292 1.181098 GCTGGGCCAGTTGAACATGT 61.181 55.000 32.80 0.00 33.43 3.21
3129 3293 0.883833 CTGGGCCAGTTGAACATGTC 59.116 55.000 25.74 0.00 0.00 3.06
3133 3297 3.245229 TGGGCCAGTTGAACATGTCTTAT 60.245 43.478 0.00 0.00 0.00 1.73
3142 3306 1.496060 ACATGTCTTATCGGGCTGGA 58.504 50.000 0.00 0.00 0.00 3.86
3160 3324 5.186198 GCTGGACCAGAATTACATACAGTT 58.814 41.667 26.25 0.00 32.44 3.16
3161 3325 5.648092 GCTGGACCAGAATTACATACAGTTT 59.352 40.000 26.25 0.00 32.44 2.66
3162 3326 6.821665 GCTGGACCAGAATTACATACAGTTTA 59.178 38.462 26.25 0.00 32.44 2.01
3163 3327 7.499232 GCTGGACCAGAATTACATACAGTTTAT 59.501 37.037 26.25 0.00 32.44 1.40
3168 3332 9.204570 ACCAGAATTACATACAGTTTATATCGC 57.795 33.333 0.00 0.00 0.00 4.58
3169 3333 9.203421 CCAGAATTACATACAGTTTATATCGCA 57.797 33.333 0.00 0.00 0.00 5.10
3172 3336 9.807386 GAATTACATACAGTTTATATCGCAACC 57.193 33.333 0.00 0.00 0.00 3.77
3173 3337 9.555727 AATTACATACAGTTTATATCGCAACCT 57.444 29.630 0.00 0.00 0.00 3.50
3174 3338 8.951787 TTACATACAGTTTATATCGCAACCTT 57.048 30.769 0.00 0.00 0.00 3.50
3175 3339 7.859325 ACATACAGTTTATATCGCAACCTTT 57.141 32.000 0.00 0.00 0.00 3.11
3176 3340 8.276252 ACATACAGTTTATATCGCAACCTTTT 57.724 30.769 0.00 0.00 0.00 2.27
3177 3341 8.736244 ACATACAGTTTATATCGCAACCTTTTT 58.264 29.630 0.00 0.00 0.00 1.94
3250 3414 1.229428 CAACCGTGCTGATGTCTGTT 58.771 50.000 0.00 0.00 0.00 3.16
3251 3415 1.069703 CAACCGTGCTGATGTCTGTTG 60.070 52.381 0.00 0.00 0.00 3.33
3253 3417 0.320683 CCGTGCTGATGTCTGTTGGA 60.321 55.000 0.00 0.00 0.00 3.53
3265 3446 1.827399 CTGTTGGACCCAGGTACGCT 61.827 60.000 0.00 0.00 0.00 5.07
3317 3498 0.109272 CTTCTGCGGCTACTTCGTGA 60.109 55.000 0.00 0.00 0.00 4.35
3379 3560 1.274167 GTGTCCACGATGAAGTACCCA 59.726 52.381 0.00 0.00 0.00 4.51
3412 3593 1.153901 GATGAACGAGTTCGGCGGA 60.154 57.895 7.21 0.00 44.95 5.54
3413 3594 1.140407 GATGAACGAGTTCGGCGGAG 61.140 60.000 7.21 0.00 44.95 4.63
3414 3595 1.592400 ATGAACGAGTTCGGCGGAGA 61.592 55.000 7.21 0.00 44.95 3.71
3465 3646 1.880340 GCAACGCCATCCTCGAGAG 60.880 63.158 15.71 4.11 0.00 3.20
3483 3664 2.821366 CCTCACCATCAGCGTGGC 60.821 66.667 5.84 0.00 43.27 5.01
3595 3776 4.021016 TCCAAGAACAAGAGGAAGTAGCTC 60.021 45.833 0.00 0.00 0.00 4.09
3603 3784 1.549170 GAGGAAGTAGCTCAACCGGAA 59.451 52.381 9.46 0.00 0.00 4.30
3634 3815 4.428209 CTCCCTGTATCGACATATCATGC 58.572 47.826 0.00 0.00 34.24 4.06
3657 3843 6.209361 GCTGGTTTGCTAGCTTAATTAATCC 58.791 40.000 17.23 9.44 44.51 3.01
3658 3844 6.371809 TGGTTTGCTAGCTTAATTAATCCG 57.628 37.500 17.23 0.00 0.00 4.18
3721 3951 4.023622 CGTACGGATCATGTCAAGATCTCT 60.024 45.833 15.65 5.88 41.24 3.10
3874 4111 3.346426 CCTCTTGGGTTTGGTCCAG 57.654 57.895 0.00 0.00 35.48 3.86
3902 4139 3.612517 GATGCATATCCTGGTGCGA 57.387 52.632 0.00 0.00 44.11 5.10
3923 4161 3.824806 CGTGACAGACGGACGTTC 58.175 61.111 0.00 0.00 44.85 3.95
4049 4289 5.655488 TCTTGATCTCTTTCTCAACGATCC 58.345 41.667 0.00 0.00 31.76 3.36
4054 4294 7.555965 TGATCTCTTTCTCAACGATCCAAATA 58.444 34.615 0.00 0.00 31.76 1.40
4183 4448 1.228245 GCTGTTTCCAGGTGCCTGA 60.228 57.895 19.04 3.40 46.30 3.86
4207 4472 0.534412 CACAGGATCGTTCAGCCTCT 59.466 55.000 0.00 0.00 0.00 3.69
4385 4661 5.415415 TGCTAAATTTGTTTGCGCAAAAT 57.585 30.435 35.09 22.83 41.03 1.82
4394 4670 3.057666 TGTTTGCGCAAAATAGATGCTCA 60.058 39.130 35.09 22.20 41.64 4.26
4395 4671 4.107622 GTTTGCGCAAAATAGATGCTCAT 58.892 39.130 35.09 0.00 38.21 2.90
4396 4672 3.343380 TGCGCAAAATAGATGCTCATG 57.657 42.857 8.16 0.00 41.64 3.07
4397 4673 2.944349 TGCGCAAAATAGATGCTCATGA 59.056 40.909 8.16 0.00 41.64 3.07
4398 4674 3.002965 TGCGCAAAATAGATGCTCATGAG 59.997 43.478 18.84 18.84 41.64 2.90
4399 4675 3.003068 GCGCAAAATAGATGCTCATGAGT 59.997 43.478 23.38 4.98 41.64 3.41
4400 4676 4.524749 CGCAAAATAGATGCTCATGAGTG 58.475 43.478 23.38 11.49 41.64 3.51
4401 4677 4.288531 GCAAAATAGATGCTCATGAGTGC 58.711 43.478 23.38 17.01 40.64 4.40
4402 4678 4.524749 CAAAATAGATGCTCATGAGTGCG 58.475 43.478 23.38 0.00 37.07 5.34
4403 4679 1.793258 ATAGATGCTCATGAGTGCGC 58.207 50.000 23.38 10.95 37.07 6.09
4406 4682 4.306767 TGCTCATGAGTGCGCAAT 57.693 50.000 23.38 12.73 42.61 3.56
4408 4684 1.292992 TGCTCATGAGTGCGCAATAG 58.707 50.000 23.38 6.28 42.61 1.73
4409 4685 1.293924 GCTCATGAGTGCGCAATAGT 58.706 50.000 23.38 0.00 36.13 2.12
4410 4686 2.159114 TGCTCATGAGTGCGCAATAGTA 60.159 45.455 23.38 0.88 42.61 1.82
4411 4687 2.219674 GCTCATGAGTGCGCAATAGTAC 59.780 50.000 23.38 0.00 36.13 2.73
4412 4688 3.711086 CTCATGAGTGCGCAATAGTACT 58.289 45.455 14.00 2.86 39.73 2.73
4413 4689 4.793028 GCTCATGAGTGCGCAATAGTACTA 60.793 45.833 23.38 4.77 37.20 1.82
4465 4743 6.018669 GCCTGACATGCTAACAAGATAACTAC 60.019 42.308 0.00 0.00 0.00 2.73
4499 4777 3.558006 GGAAGCTCGGAAAATCTTCTAGC 59.442 47.826 0.00 0.13 39.15 3.42
4513 4791 5.148651 TCTTCTAGCAAAGTAGTGGTTCC 57.851 43.478 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.186047 GACGATGTCGGGCAACGG 61.186 66.667 16.43 0.00 45.79 4.44
31 32 1.072331 ACTCCAAAGGCAACAGACGAT 59.928 47.619 0.00 0.00 41.41 3.73
33 34 0.868406 GACTCCAAAGGCAACAGACG 59.132 55.000 0.00 0.00 41.41 4.18
42 43 2.810486 GTCGTCGTGACTCCAAAGG 58.190 57.895 0.00 0.00 44.58 3.11
56 57 2.419324 GAGGAGATGTTGTACGAGTCGT 59.581 50.000 23.47 23.47 44.35 4.34
83 84 0.389817 TGGCTTCACGGAAGATGTCG 60.390 55.000 15.23 0.00 41.71 4.35
87 88 2.366916 CCTAGATGGCTTCACGGAAGAT 59.633 50.000 15.23 3.61 41.71 2.40
94 95 2.028930 CCGGTATCCTAGATGGCTTCAC 60.029 54.545 0.00 0.00 35.26 3.18
106 107 1.390565 CGAGTCTGTTCCGGTATCCT 58.609 55.000 0.00 0.00 0.00 3.24
111 112 1.835712 AACCCGAGTCTGTTCCGGT 60.836 57.895 0.00 0.00 41.53 5.28
155 172 0.797249 CTGATTCGTCCGTCGTGGTC 60.797 60.000 0.00 0.00 40.80 4.02
156 173 1.211969 CTGATTCGTCCGTCGTGGT 59.788 57.895 0.00 0.00 40.80 4.16
187 204 0.321653 AGATTTGGGCACGTCAGGTC 60.322 55.000 0.00 0.00 0.00 3.85
191 208 2.627945 GACATAGATTTGGGCACGTCA 58.372 47.619 0.00 0.00 0.00 4.35
196 213 1.837439 ACGAGGACATAGATTTGGGCA 59.163 47.619 0.00 0.00 0.00 5.36
197 214 2.158957 TGACGAGGACATAGATTTGGGC 60.159 50.000 0.00 0.00 0.00 5.36
198 215 3.118775 TGTGACGAGGACATAGATTTGGG 60.119 47.826 0.00 0.00 0.00 4.12
199 216 4.115516 CTGTGACGAGGACATAGATTTGG 58.884 47.826 0.00 0.00 0.00 3.28
200 217 4.998788 TCTGTGACGAGGACATAGATTTG 58.001 43.478 0.00 0.00 32.32 2.32
201 218 5.860941 ATCTGTGACGAGGACATAGATTT 57.139 39.130 0.00 0.00 41.12 2.17
202 219 6.717084 TCATATCTGTGACGAGGACATAGATT 59.283 38.462 11.05 0.87 41.12 2.40
203 220 6.241645 TCATATCTGTGACGAGGACATAGAT 58.758 40.000 0.00 0.00 44.20 1.98
204 221 5.621193 TCATATCTGTGACGAGGACATAGA 58.379 41.667 0.00 0.00 39.14 1.98
205 222 5.106357 CCTCATATCTGTGACGAGGACATAG 60.106 48.000 0.00 0.00 45.08 2.23
206 223 4.762251 CCTCATATCTGTGACGAGGACATA 59.238 45.833 0.00 0.00 45.08 2.29
207 224 3.571828 CCTCATATCTGTGACGAGGACAT 59.428 47.826 0.00 0.00 45.08 3.06
208 225 2.952310 CCTCATATCTGTGACGAGGACA 59.048 50.000 0.00 0.00 45.08 4.02
209 226 2.294791 CCCTCATATCTGTGACGAGGAC 59.705 54.545 5.33 0.00 45.08 3.85
210 227 2.174854 TCCCTCATATCTGTGACGAGGA 59.825 50.000 5.33 0.00 45.08 3.71
211 228 2.294791 GTCCCTCATATCTGTGACGAGG 59.705 54.545 0.00 0.00 42.46 4.63
212 229 2.031595 CGTCCCTCATATCTGTGACGAG 60.032 54.545 3.98 0.00 37.02 4.18
213 230 1.947456 CGTCCCTCATATCTGTGACGA 59.053 52.381 3.98 0.00 37.02 4.20
214 231 1.001268 CCGTCCCTCATATCTGTGACG 60.001 57.143 0.00 0.00 35.01 4.35
215 232 2.032620 ACCGTCCCTCATATCTGTGAC 58.967 52.381 0.00 0.00 0.00 3.67
216 233 2.454336 ACCGTCCCTCATATCTGTGA 57.546 50.000 0.00 0.00 0.00 3.58
217 234 2.543861 CGAACCGTCCCTCATATCTGTG 60.544 54.545 0.00 0.00 0.00 3.66
218 235 1.681793 CGAACCGTCCCTCATATCTGT 59.318 52.381 0.00 0.00 0.00 3.41
219 236 1.681793 ACGAACCGTCCCTCATATCTG 59.318 52.381 0.00 0.00 33.69 2.90
220 237 2.068834 ACGAACCGTCCCTCATATCT 57.931 50.000 0.00 0.00 33.69 1.98
221 238 3.834610 CATACGAACCGTCCCTCATATC 58.165 50.000 0.00 0.00 41.54 1.63
222 239 2.029290 GCATACGAACCGTCCCTCATAT 60.029 50.000 0.00 0.00 41.54 1.78
223 240 1.338973 GCATACGAACCGTCCCTCATA 59.661 52.381 0.00 0.00 41.54 2.15
224 241 0.104304 GCATACGAACCGTCCCTCAT 59.896 55.000 0.00 0.00 41.54 2.90
225 242 1.514087 GCATACGAACCGTCCCTCA 59.486 57.895 0.00 0.00 41.54 3.86
226 243 1.588139 CGCATACGAACCGTCCCTC 60.588 63.158 0.00 0.00 43.93 4.30
227 244 2.275547 GACGCATACGAACCGTCCCT 62.276 60.000 0.00 0.00 43.89 4.20
228 245 1.875364 GACGCATACGAACCGTCCC 60.875 63.158 0.00 0.00 43.89 4.46
229 246 3.684323 GACGCATACGAACCGTCC 58.316 61.111 0.00 0.00 43.89 4.79
233 250 3.613702 CGCGGACGCATACGAACC 61.614 66.667 17.35 0.00 43.93 3.62
234 251 3.613702 CCGCGGACGCATACGAAC 61.614 66.667 24.07 0.00 43.93 3.95
235 252 3.813143 TCCGCGGACGCATACGAA 61.813 61.111 27.28 0.00 43.93 3.85
236 253 4.541482 GTCCGCGGACGCATACGA 62.541 66.667 39.77 8.07 43.93 3.43
244 261 2.641559 CCCTATACGTCCGCGGAC 59.358 66.667 41.75 41.75 43.45 4.79
245 262 2.595463 CCCCTATACGTCCGCGGA 60.595 66.667 27.28 27.28 43.45 5.54
246 263 4.353437 GCCCCTATACGTCCGCGG 62.353 72.222 22.12 22.12 43.45 6.46
247 264 4.695231 CGCCCCTATACGTCCGCG 62.695 72.222 0.00 0.00 44.93 6.46
248 265 4.353437 CCGCCCCTATACGTCCGC 62.353 72.222 0.00 0.00 0.00 5.54
249 266 1.530013 AATCCGCCCCTATACGTCCG 61.530 60.000 0.00 0.00 0.00 4.79
250 267 0.683412 AAATCCGCCCCTATACGTCC 59.317 55.000 0.00 0.00 0.00 4.79
251 268 1.792006 CAAATCCGCCCCTATACGTC 58.208 55.000 0.00 0.00 0.00 4.34
252 269 0.250166 GCAAATCCGCCCCTATACGT 60.250 55.000 0.00 0.00 0.00 3.57
253 270 2.540145 GCAAATCCGCCCCTATACG 58.460 57.895 0.00 0.00 0.00 3.06
262 279 0.378610 GCTAGACTTGGCAAATCCGC 59.621 55.000 4.87 5.01 37.80 5.54
263 280 2.029838 AGCTAGACTTGGCAAATCCG 57.970 50.000 4.87 0.00 37.80 4.18
264 281 6.102897 TCTATAGCTAGACTTGGCAAATCC 57.897 41.667 4.87 0.00 32.40 3.01
265 282 6.091986 GCATCTATAGCTAGACTTGGCAAATC 59.908 42.308 0.00 0.00 36.81 2.17
266 283 5.936956 GCATCTATAGCTAGACTTGGCAAAT 59.063 40.000 0.00 0.00 36.81 2.32
267 284 5.070981 AGCATCTATAGCTAGACTTGGCAAA 59.929 40.000 0.00 0.00 41.32 3.68
268 285 4.590647 AGCATCTATAGCTAGACTTGGCAA 59.409 41.667 0.00 0.00 41.32 4.52
269 286 4.155709 AGCATCTATAGCTAGACTTGGCA 58.844 43.478 0.00 0.00 41.32 4.92
270 287 4.743493 GAGCATCTATAGCTAGACTTGGC 58.257 47.826 0.00 0.00 43.58 4.52
286 303 5.406780 CGTCCCATCACTTAATTAGAGCATC 59.593 44.000 0.00 0.00 0.00 3.91
287 304 5.300752 CGTCCCATCACTTAATTAGAGCAT 58.699 41.667 0.00 0.00 0.00 3.79
288 305 4.442893 CCGTCCCATCACTTAATTAGAGCA 60.443 45.833 0.00 0.00 0.00 4.26
289 306 4.058817 CCGTCCCATCACTTAATTAGAGC 58.941 47.826 0.00 0.00 0.00 4.09
290 307 4.344102 TCCCGTCCCATCACTTAATTAGAG 59.656 45.833 0.00 0.00 0.00 2.43
291 308 4.291792 TCCCGTCCCATCACTTAATTAGA 58.708 43.478 0.00 0.00 0.00 2.10
292 309 4.682778 TCCCGTCCCATCACTTAATTAG 57.317 45.455 0.00 0.00 0.00 1.73
293 310 4.141574 CCTTCCCGTCCCATCACTTAATTA 60.142 45.833 0.00 0.00 0.00 1.40
294 311 3.371595 CCTTCCCGTCCCATCACTTAATT 60.372 47.826 0.00 0.00 0.00 1.40
295 312 2.172717 CCTTCCCGTCCCATCACTTAAT 59.827 50.000 0.00 0.00 0.00 1.40
296 313 1.557832 CCTTCCCGTCCCATCACTTAA 59.442 52.381 0.00 0.00 0.00 1.85
297 314 1.200519 CCTTCCCGTCCCATCACTTA 58.799 55.000 0.00 0.00 0.00 2.24
298 315 1.562672 CCCTTCCCGTCCCATCACTT 61.563 60.000 0.00 0.00 0.00 3.16
299 316 1.995626 CCCTTCCCGTCCCATCACT 60.996 63.158 0.00 0.00 0.00 3.41
300 317 2.590092 CCCTTCCCGTCCCATCAC 59.410 66.667 0.00 0.00 0.00 3.06
301 318 3.407967 GCCCTTCCCGTCCCATCA 61.408 66.667 0.00 0.00 0.00 3.07
302 319 2.284515 ATTGCCCTTCCCGTCCCATC 62.285 60.000 0.00 0.00 0.00 3.51
303 320 2.316586 ATTGCCCTTCCCGTCCCAT 61.317 57.895 0.00 0.00 0.00 4.00
304 321 2.938798 ATTGCCCTTCCCGTCCCA 60.939 61.111 0.00 0.00 0.00 4.37
305 322 2.440247 CATTGCCCTTCCCGTCCC 60.440 66.667 0.00 0.00 0.00 4.46
309 326 0.748005 CTACACCATTGCCCTTCCCG 60.748 60.000 0.00 0.00 0.00 5.14
312 329 2.092429 TCCATCTACACCATTGCCCTTC 60.092 50.000 0.00 0.00 0.00 3.46
318 335 4.637534 CCAGTCTTTCCATCTACACCATTG 59.362 45.833 0.00 0.00 0.00 2.82
324 341 2.355108 GCAGCCAGTCTTTCCATCTACA 60.355 50.000 0.00 0.00 0.00 2.74
342 359 4.925576 CGTACTAGGCCGCCGCAG 62.926 72.222 3.05 8.11 36.38 5.18
348 365 1.735376 ATGGTCTGCGTACTAGGCCG 61.735 60.000 11.53 0.00 42.90 6.13
349 366 0.464452 AATGGTCTGCGTACTAGGCC 59.536 55.000 9.90 9.90 40.37 5.19
350 367 3.381949 CTTAATGGTCTGCGTACTAGGC 58.618 50.000 0.00 0.00 0.00 3.93
351 368 3.243771 CCCTTAATGGTCTGCGTACTAGG 60.244 52.174 0.00 0.00 0.00 3.02
352 369 3.635373 TCCCTTAATGGTCTGCGTACTAG 59.365 47.826 0.00 0.00 0.00 2.57
353 370 3.634504 TCCCTTAATGGTCTGCGTACTA 58.365 45.455 0.00 0.00 0.00 1.82
354 371 2.463752 TCCCTTAATGGTCTGCGTACT 58.536 47.619 0.00 0.00 0.00 2.73
355 372 2.973694 TCCCTTAATGGTCTGCGTAC 57.026 50.000 0.00 0.00 0.00 3.67
356 373 3.985019 TTTCCCTTAATGGTCTGCGTA 57.015 42.857 0.00 0.00 0.00 4.42
357 374 2.871096 TTTCCCTTAATGGTCTGCGT 57.129 45.000 0.00 0.00 0.00 5.24
358 375 4.718940 AATTTTCCCTTAATGGTCTGCG 57.281 40.909 0.00 0.00 0.00 5.18
359 376 7.404671 TCTAAATTTTCCCTTAATGGTCTGC 57.595 36.000 0.00 0.00 0.00 4.26
383 400 9.378551 TCATCAATAGTCTGCGTATAACTTTTT 57.621 29.630 0.00 0.00 0.00 1.94
384 401 8.942338 TCATCAATAGTCTGCGTATAACTTTT 57.058 30.769 0.00 0.00 0.00 2.27
394 411 4.625028 TCTCCATTCATCAATAGTCTGCG 58.375 43.478 0.00 0.00 0.00 5.18
398 415 9.023962 AGATACTCTCTCCATTCATCAATAGTC 57.976 37.037 0.00 0.00 0.00 2.59
463 480 1.144913 AGGTGTGCCCAAACTATGTGT 59.855 47.619 0.00 0.00 34.66 3.72
484 501 6.745450 GCTAAGCTGCACGTAAAAATGATTAA 59.255 34.615 1.02 0.00 0.00 1.40
485 502 6.255215 GCTAAGCTGCACGTAAAAATGATTA 58.745 36.000 1.02 0.00 0.00 1.75
495 513 1.138883 CCTCGCTAAGCTGCACGTA 59.861 57.895 1.02 0.00 0.00 3.57
496 514 2.125912 CCTCGCTAAGCTGCACGT 60.126 61.111 1.02 0.00 0.00 4.49
497 515 3.558411 GCCTCGCTAAGCTGCACG 61.558 66.667 1.02 0.00 0.00 5.34
499 517 2.706834 TACGCCTCGCTAAGCTGCA 61.707 57.895 1.02 0.00 0.00 4.41
513 531 1.927174 CATACTGAGCAGTTGGTACGC 59.073 52.381 8.60 0.00 42.54 4.42
516 534 4.086457 TCTCACATACTGAGCAGTTGGTA 58.914 43.478 8.60 0.00 45.64 3.25
518 536 3.599730 TCTCACATACTGAGCAGTTGG 57.400 47.619 8.60 4.32 45.64 3.77
519 537 4.502016 ACATCTCACATACTGAGCAGTTG 58.498 43.478 8.60 9.24 45.64 3.16
520 538 4.815533 ACATCTCACATACTGAGCAGTT 57.184 40.909 8.60 0.00 45.64 3.16
521 539 4.815533 AACATCTCACATACTGAGCAGT 57.184 40.909 8.35 8.35 45.64 4.40
522 540 5.063186 GTGAAACATCTCACATACTGAGCAG 59.937 44.000 0.00 0.00 44.32 4.24
523 541 4.931601 GTGAAACATCTCACATACTGAGCA 59.068 41.667 0.00 0.00 44.32 4.26
524 542 4.032217 CGTGAAACATCTCACATACTGAGC 59.968 45.833 4.75 0.00 45.03 4.26
525 543 4.564372 CCGTGAAACATCTCACATACTGAG 59.436 45.833 4.75 0.00 45.03 3.35
526 544 4.021456 ACCGTGAAACATCTCACATACTGA 60.021 41.667 4.75 0.00 45.03 3.41
528 546 4.537135 ACCGTGAAACATCTCACATACT 57.463 40.909 4.75 0.00 45.03 2.12
530 548 6.537301 GGAATTACCGTGAAACATCTCACATA 59.463 38.462 4.75 0.00 45.03 2.29
532 550 4.693566 GGAATTACCGTGAAACATCTCACA 59.306 41.667 4.75 0.00 45.03 3.58
533 551 4.935808 AGGAATTACCGTGAAACATCTCAC 59.064 41.667 0.00 0.00 44.74 3.51
534 552 5.046591 AGAGGAATTACCGTGAAACATCTCA 60.047 40.000 0.00 0.00 44.74 3.27
535 553 5.420409 AGAGGAATTACCGTGAAACATCTC 58.580 41.667 0.00 0.00 44.74 2.75
536 554 5.422214 AGAGGAATTACCGTGAAACATCT 57.578 39.130 0.00 0.00 44.74 2.90
537 555 6.496338 AAAGAGGAATTACCGTGAAACATC 57.504 37.500 0.00 0.00 44.74 3.06
539 557 6.702716 AAAAAGAGGAATTACCGTGAAACA 57.297 33.333 0.00 0.00 44.74 2.83
540 558 7.303261 CCTAAAAAGAGGAATTACCGTGAAAC 58.697 38.462 0.00 0.00 44.74 2.78
542 560 5.941647 CCCTAAAAAGAGGAATTACCGTGAA 59.058 40.000 0.00 0.00 44.74 3.18
543 561 5.248934 TCCCTAAAAAGAGGAATTACCGTGA 59.751 40.000 0.00 0.00 44.74 4.35
544 562 5.353400 GTCCCTAAAAAGAGGAATTACCGTG 59.647 44.000 0.00 0.00 44.74 4.94
545 563 5.250082 AGTCCCTAAAAAGAGGAATTACCGT 59.750 40.000 0.00 0.00 44.74 4.83
563 669 5.884232 GGAATTACCGTGAAAAATAGTCCCT 59.116 40.000 0.00 0.00 0.00 4.20
564 670 5.066893 GGGAATTACCGTGAAAAATAGTCCC 59.933 44.000 0.00 0.00 40.11 4.46
623 739 2.237392 AGAAAGGATGCCAGGTGTCTAC 59.763 50.000 0.00 0.00 0.00 2.59
669 785 1.742268 GAGGTTGCTTCTGGAATGCTC 59.258 52.381 0.00 0.00 0.00 4.26
715 831 4.233632 TCATGGCCTCATACACATTGAA 57.766 40.909 3.32 0.00 31.33 2.69
740 856 0.878523 TTGGCTGTTTGTCCTCGACG 60.879 55.000 0.00 0.00 34.95 5.12
820 936 3.620374 CGTGAGAAATGAGGATGGACAAG 59.380 47.826 0.00 0.00 0.00 3.16
1098 1218 2.436646 CCGCCGGTGAAGCTGAAT 60.437 61.111 18.79 0.00 0.00 2.57
1143 1263 1.597854 CCGCTGCTTCTTGACCACA 60.598 57.895 0.00 0.00 0.00 4.17
1374 1494 1.218047 GTCCTGCATGACGTAGGCA 59.782 57.895 6.36 7.84 46.62 4.75
1530 1650 1.050204 ACAGGTACCGTGCTTGGTTA 58.950 50.000 6.18 0.00 43.56 2.85
1531 1651 1.050204 TACAGGTACCGTGCTTGGTT 58.950 50.000 16.47 0.00 43.56 3.67
1532 1652 1.272807 ATACAGGTACCGTGCTTGGT 58.727 50.000 16.47 5.75 46.26 3.67
1536 1656 4.813750 AGTAAAATACAGGTACCGTGCT 57.186 40.909 16.47 4.53 0.00 4.40
1538 1658 6.424509 TGTCAAAGTAAAATACAGGTACCGTG 59.575 38.462 16.47 12.86 0.00 4.94
1540 1660 7.424227 TTGTCAAAGTAAAATACAGGTACCG 57.576 36.000 6.18 4.16 0.00 4.02
1541 1661 9.673454 CTTTTGTCAAAGTAAAATACAGGTACC 57.327 33.333 2.73 2.73 35.53 3.34
1556 1676 9.355215 ACGTACTATGATCTACTTTTGTCAAAG 57.645 33.333 0.00 0.00 44.57 2.77
1558 1678 9.778993 GTACGTACTATGATCTACTTTTGTCAA 57.221 33.333 18.47 0.00 0.00 3.18
1559 1679 8.118607 CGTACGTACTATGATCTACTTTTGTCA 58.881 37.037 22.55 0.00 0.00 3.58
1560 1680 8.119226 ACGTACGTACTATGATCTACTTTTGTC 58.881 37.037 21.41 0.00 0.00 3.18
1561 1681 7.907045 CACGTACGTACTATGATCTACTTTTGT 59.093 37.037 22.34 5.21 0.00 2.83
1562 1682 7.097128 GCACGTACGTACTATGATCTACTTTTG 60.097 40.741 22.34 3.01 0.00 2.44
1563 1683 6.909357 GCACGTACGTACTATGATCTACTTTT 59.091 38.462 22.34 0.00 0.00 2.27
1564 1684 6.425504 GCACGTACGTACTATGATCTACTTT 58.574 40.000 22.34 0.00 0.00 2.66
1565 1685 5.332883 CGCACGTACGTACTATGATCTACTT 60.333 44.000 22.34 0.00 0.00 2.24
1566 1686 4.149571 CGCACGTACGTACTATGATCTACT 59.850 45.833 22.34 0.00 0.00 2.57
1567 1687 4.381136 CGCACGTACGTACTATGATCTAC 58.619 47.826 22.34 7.48 0.00 2.59
1568 1688 3.120889 GCGCACGTACGTACTATGATCTA 60.121 47.826 22.34 0.00 34.88 1.98
1569 1689 2.349249 GCGCACGTACGTACTATGATCT 60.349 50.000 22.34 0.00 34.88 2.75
1570 1690 1.967908 GCGCACGTACGTACTATGATC 59.032 52.381 22.34 11.76 34.88 2.92
1571 1691 1.331447 TGCGCACGTACGTACTATGAT 59.669 47.619 22.34 0.00 34.88 2.45
1572 1692 0.726256 TGCGCACGTACGTACTATGA 59.274 50.000 22.34 0.11 34.88 2.15
1573 1693 0.835740 GTGCGCACGTACGTACTATG 59.164 55.000 26.77 19.91 43.99 2.23
1574 1694 3.224955 GTGCGCACGTACGTACTAT 57.775 52.632 26.77 8.70 43.99 2.12
1575 1695 4.743558 GTGCGCACGTACGTACTA 57.256 55.556 26.77 4.45 43.99 1.82
1595 1715 5.632347 GCTGTTCTGTTAACACGTATACACT 59.368 40.000 3.59 0.00 0.00 3.55
1613 1734 1.516161 TGATGTCTGCACAGCTGTTC 58.484 50.000 18.94 14.04 39.83 3.18
1698 1819 1.224069 GGATGATGTCCACGCCGATG 61.224 60.000 0.00 0.00 46.96 3.84
1831 1952 2.350895 CGGCTGGTGGATGGTCAA 59.649 61.111 0.00 0.00 0.00 3.18
1866 1987 0.039764 TGATGAGGTGGTCGAGGAGT 59.960 55.000 0.00 0.00 0.00 3.85
1899 2020 2.176273 GCCGCTGTACATGAGCTGG 61.176 63.158 0.00 5.64 34.03 4.85
2055 2176 1.371183 CTTCAGACCGGTGAGGCAA 59.629 57.895 14.63 0.00 46.52 4.52
2291 2412 7.307811 CCGAGTCATACTATCTTCATAACACGA 60.308 40.741 0.00 0.00 0.00 4.35
2292 2413 6.797513 CCGAGTCATACTATCTTCATAACACG 59.202 42.308 0.00 0.00 0.00 4.49
2293 2414 7.649973 ACCGAGTCATACTATCTTCATAACAC 58.350 38.462 0.00 0.00 0.00 3.32
2294 2415 7.818997 ACCGAGTCATACTATCTTCATAACA 57.181 36.000 0.00 0.00 0.00 2.41
2295 2416 7.964011 GCTACCGAGTCATACTATCTTCATAAC 59.036 40.741 0.00 0.00 0.00 1.89
2296 2417 7.664318 TGCTACCGAGTCATACTATCTTCATAA 59.336 37.037 0.00 0.00 0.00 1.90
2303 2424 5.470777 AGTCTTGCTACCGAGTCATACTATC 59.529 44.000 0.00 0.00 0.00 2.08
2308 2430 3.353557 ACAGTCTTGCTACCGAGTCATA 58.646 45.455 0.00 0.00 0.00 2.15
2309 2431 2.171840 ACAGTCTTGCTACCGAGTCAT 58.828 47.619 0.00 0.00 0.00 3.06
2312 2434 2.792878 ACTACAGTCTTGCTACCGAGT 58.207 47.619 0.00 0.00 0.00 4.18
2316 2438 4.174762 GCAACTACTACAGTCTTGCTACC 58.825 47.826 13.60 0.00 38.13 3.18
2318 2440 4.806330 GTGCAACTACTACAGTCTTGCTA 58.194 43.478 18.40 8.34 40.09 3.49
2319 2441 3.654414 GTGCAACTACTACAGTCTTGCT 58.346 45.455 18.40 0.00 40.09 3.91
2337 2459 1.349627 CGATCGGACATGCAAGTGC 59.650 57.895 7.38 0.12 42.50 4.40
2338 2460 0.740868 ACCGATCGGACATGCAAGTG 60.741 55.000 39.55 9.57 38.96 3.16
2339 2461 0.460284 GACCGATCGGACATGCAAGT 60.460 55.000 39.55 14.76 38.96 3.16
2340 2462 1.482621 CGACCGATCGGACATGCAAG 61.483 60.000 39.55 15.95 44.99 4.01
2341 2463 1.518352 CGACCGATCGGACATGCAA 60.518 57.895 39.55 0.00 44.99 4.08
2342 2464 2.104132 CGACCGATCGGACATGCA 59.896 61.111 39.55 0.00 44.99 3.96
2351 2473 1.638467 GCAGTTCATGCGACCGATC 59.362 57.895 0.00 0.00 46.99 3.69
2367 2489 0.975556 TCCCGGAGACAAGCTATGCA 60.976 55.000 0.73 0.00 0.00 3.96
2448 2570 1.735559 GCCTCGTTCACCGTGTACC 60.736 63.158 3.01 0.00 37.94 3.34
2467 2589 4.509737 GCCGGCGACAGGTAGTCC 62.510 72.222 12.58 0.00 44.66 3.85
2653 2775 1.144503 GCCATCAGGAATCCCATCACT 59.855 52.381 0.00 0.00 36.89 3.41
2662 2784 0.632835 ACATGGTGGCCATCAGGAAT 59.367 50.000 35.79 13.07 43.15 3.01
2725 2847 2.670414 CACGGTGAAGATGAAGAAGCTC 59.330 50.000 0.74 0.00 0.00 4.09
2881 3003 1.599576 GGACTGGAGCAGGAGGAAC 59.400 63.158 0.00 0.00 35.51 3.62
2905 3027 1.144057 CCAGGTGATGAGGGCGTAC 59.856 63.158 0.00 0.00 0.00 3.67
2953 3075 3.546417 CGTAGAGCATGACGAGGAAGTAC 60.546 52.174 0.00 0.00 41.60 2.73
3048 3170 7.393216 TCCATTTCCTCCCAAATAAAATTGTG 58.607 34.615 0.00 0.00 0.00 3.33
3057 3179 4.033009 GACCAATCCATTTCCTCCCAAAT 58.967 43.478 0.00 0.00 0.00 2.32
3062 3184 1.680338 CGGACCAATCCATTTCCTCC 58.320 55.000 0.00 0.00 46.67 4.30
3109 3268 1.181098 ACATGTTCAACTGGCCCAGC 61.181 55.000 11.63 0.00 34.37 4.85
3128 3292 0.032515 TCTGGTCCAGCCCGATAAGA 60.033 55.000 14.64 0.00 36.04 2.10
3129 3293 0.830648 TTCTGGTCCAGCCCGATAAG 59.169 55.000 14.64 0.00 36.04 1.73
3133 3297 0.539986 GTAATTCTGGTCCAGCCCGA 59.460 55.000 14.64 0.49 36.04 5.14
3142 3306 9.204570 GCGATATAAACTGTATGTAATTCTGGT 57.795 33.333 0.00 0.00 0.00 4.00
3215 3379 5.047188 CACGGTTGCCTTCTAAACATTTTT 58.953 37.500 0.00 0.00 0.00 1.94
3216 3380 4.616953 CACGGTTGCCTTCTAAACATTTT 58.383 39.130 0.00 0.00 0.00 1.82
3217 3381 3.552068 GCACGGTTGCCTTCTAAACATTT 60.552 43.478 0.00 0.00 43.66 2.32
3218 3382 2.030274 GCACGGTTGCCTTCTAAACATT 60.030 45.455 0.00 0.00 43.66 2.71
3219 3383 1.539827 GCACGGTTGCCTTCTAAACAT 59.460 47.619 0.00 0.00 43.66 2.71
3220 3384 0.948678 GCACGGTTGCCTTCTAAACA 59.051 50.000 0.00 0.00 43.66 2.83
3232 3396 1.229428 CAACAGACATCAGCACGGTT 58.771 50.000 0.00 0.00 0.00 4.44
3250 3414 3.702048 GCAGCGTACCTGGGTCCA 61.702 66.667 11.72 0.00 42.03 4.02
3251 3415 4.814294 CGCAGCGTACCTGGGTCC 62.814 72.222 6.65 0.00 46.28 4.46
3317 3498 2.360350 CGGGATGCTGTGGCTGTT 60.360 61.111 0.00 0.00 39.59 3.16
3379 3560 2.959707 GTTCATCAGGAGACCCTCGTAT 59.040 50.000 0.00 0.00 42.02 3.06
3388 3569 1.472878 CCGAACTCGTTCATCAGGAGA 59.527 52.381 10.10 0.00 39.43 3.71
3412 3593 1.751162 CGAGGAGAAGTCCCGCTCT 60.751 63.158 0.00 0.00 45.26 4.09
3413 3594 1.313812 TTCGAGGAGAAGTCCCGCTC 61.314 60.000 0.00 0.00 45.26 5.03
3414 3595 1.304217 TTCGAGGAGAAGTCCCGCT 60.304 57.895 0.00 0.00 45.26 5.52
3418 3599 1.511768 CGGGTTCGAGGAGAAGTCC 59.488 63.158 0.00 0.00 44.33 3.85
3419 3600 1.153804 GCGGGTTCGAGGAGAAGTC 60.154 63.158 0.00 0.00 39.95 3.01
3465 3646 2.821366 CCACGCTGATGGTGAGGC 60.821 66.667 0.00 0.00 37.60 4.70
3483 3664 1.672356 CTCCACTTGCGGTCCTTGG 60.672 63.158 0.00 0.00 0.00 3.61
3605 3786 3.942439 GATACAGGGAGCCCGGCC 61.942 72.222 5.55 0.00 41.95 6.13
3606 3787 4.301027 CGATACAGGGAGCCCGGC 62.301 72.222 0.00 0.00 41.95 6.13
3607 3788 2.520982 TCGATACAGGGAGCCCGG 60.521 66.667 4.03 4.03 41.95 5.73
3610 3791 2.826128 TGATATGTCGATACAGGGAGCC 59.174 50.000 0.00 0.00 39.49 4.70
3611 3792 4.428209 CATGATATGTCGATACAGGGAGC 58.572 47.826 0.00 0.00 39.49 4.70
3612 3793 4.159321 AGCATGATATGTCGATACAGGGAG 59.841 45.833 0.00 0.00 39.49 4.30
3613 3794 4.082026 CAGCATGATATGTCGATACAGGGA 60.082 45.833 0.00 0.00 39.69 4.20
3614 3795 4.179298 CAGCATGATATGTCGATACAGGG 58.821 47.826 0.00 0.00 39.69 4.45
3634 3815 6.260050 TCGGATTAATTAAGCTAGCAAACCAG 59.740 38.462 18.83 6.33 0.00 4.00
3652 3838 4.893524 TGATTACCAGAGAGCTTCGGATTA 59.106 41.667 0.00 0.00 0.00 1.75
3653 3839 3.706594 TGATTACCAGAGAGCTTCGGATT 59.293 43.478 0.00 0.00 0.00 3.01
3654 3840 3.300388 TGATTACCAGAGAGCTTCGGAT 58.700 45.455 0.00 0.00 0.00 4.18
3655 3841 2.735151 TGATTACCAGAGAGCTTCGGA 58.265 47.619 0.00 0.00 0.00 4.55
3656 3842 3.742433 ATGATTACCAGAGAGCTTCGG 57.258 47.619 0.00 0.00 0.00 4.30
3657 3843 4.686972 TGAATGATTACCAGAGAGCTTCG 58.313 43.478 0.00 0.00 0.00 3.79
3658 3844 7.281774 TCAAATGAATGATTACCAGAGAGCTTC 59.718 37.037 0.00 0.00 0.00 3.86
3819 4056 1.873591 GAGCGAACAACACCACAGATT 59.126 47.619 0.00 0.00 0.00 2.40
3823 4060 0.176910 TCAGAGCGAACAACACCACA 59.823 50.000 0.00 0.00 0.00 4.17
3865 4102 1.830408 CCCAAACGGCTGGACCAAA 60.830 57.895 6.61 0.00 38.96 3.28
3874 4111 0.598065 GATATGCATCCCCAAACGGC 59.402 55.000 0.19 0.00 0.00 5.68
3896 4133 1.080772 TCTGTCACGTCATCGCACC 60.081 57.895 0.00 0.00 41.18 5.01
3920 4157 3.526534 GGGTCACTAGCATGAGAAGAAC 58.473 50.000 0.00 0.00 0.00 3.01
3923 4161 1.478510 ACGGGTCACTAGCATGAGAAG 59.521 52.381 0.00 0.00 0.00 2.85
4049 4289 4.694339 CTCCCCGAGGTTTAGTCTATTTG 58.306 47.826 0.00 0.00 0.00 2.32
4054 4294 0.252103 TGCTCCCCGAGGTTTAGTCT 60.252 55.000 0.00 0.00 0.00 3.24
4145 4410 1.396996 CGGGCAGAGTAATTGGAAACG 59.603 52.381 0.00 0.00 0.00 3.60
4183 4448 2.809601 GAACGATCCTGTGCGCGT 60.810 61.111 8.43 0.00 38.81 6.01
4274 4548 9.549078 ACGGGTTGTTGAAAAATAAAATAATGT 57.451 25.926 0.00 0.00 0.00 2.71
4394 4670 4.649088 TGTAGTACTATTGCGCACTCAT 57.351 40.909 11.12 3.34 0.00 2.90
4395 4671 4.443913 TTGTAGTACTATTGCGCACTCA 57.556 40.909 11.12 0.00 0.00 3.41
4396 4672 5.773239 TTTTGTAGTACTATTGCGCACTC 57.227 39.130 11.12 0.00 0.00 3.51
4499 4777 3.243771 ACGAGACAGGAACCACTACTTTG 60.244 47.826 0.00 0.00 0.00 2.77
4532 4810 0.319083 TTATTGTCTCCACGGTGCGT 59.681 50.000 1.68 0.00 42.36 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.