Multiple sequence alignment - TraesCS3B01G285200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G285200 chr3B 100.000 2669 0 0 1 2669 456676875 456674207 0.000000e+00 4929.0
1 TraesCS3B01G285200 chr3B 85.455 110 11 5 2412 2517 456674365 456674257 2.810000e-20 110.0
2 TraesCS3B01G285200 chr3B 85.455 110 11 5 2511 2619 456674464 456674359 2.810000e-20 110.0
3 TraesCS3B01G285200 chr3D 90.305 1279 44 26 457 1722 355707465 355706254 0.000000e+00 1602.0
4 TraesCS3B01G285200 chr3D 92.940 779 37 14 1894 2669 355706035 355705272 0.000000e+00 1118.0
5 TraesCS3B01G285200 chr3D 84.170 259 16 10 226 483 355710596 355710362 7.430000e-56 228.0
6 TraesCS3B01G285200 chr3D 88.889 189 7 4 582 761 355709860 355709677 1.240000e-53 220.0
7 TraesCS3B01G285200 chr3D 86.364 110 10 5 2511 2619 355705529 355705424 6.040000e-22 115.0
8 TraesCS3B01G285200 chr3D 83.333 114 17 2 2395 2507 355705447 355705335 1.310000e-18 104.0
9 TraesCS3B01G285200 chr3D 94.000 50 3 0 481 530 355709971 355709922 2.850000e-10 76.8
10 TraesCS3B01G285200 chr3A 97.784 722 16 0 1001 1722 474679303 474678582 0.000000e+00 1245.0
11 TraesCS3B01G285200 chr3A 91.105 787 44 22 1894 2669 474678363 474677592 0.000000e+00 1042.0
12 TraesCS3B01G285200 chr3A 89.560 364 12 3 609 963 474679649 474679303 3.150000e-119 438.0
13 TraesCS3B01G285200 chr3A 85.227 176 14 5 53 224 397628650 397628817 1.270000e-38 171.0
14 TraesCS3B01G285200 chr3A 86.486 111 8 7 2511 2619 474677849 474677744 6.040000e-22 115.0
15 TraesCS3B01G285200 chr3A 82.677 127 17 5 2395 2517 474677767 474677642 1.010000e-19 108.0
16 TraesCS3B01G285200 chr2D 86.072 919 88 27 759 1669 60765916 60765030 0.000000e+00 952.0
17 TraesCS3B01G285200 chr2A 85.592 937 96 24 764 1669 61296239 61295311 0.000000e+00 946.0
18 TraesCS3B01G285200 chr2B 87.313 670 82 3 1003 1669 95219640 95218971 0.000000e+00 763.0
19 TraesCS3B01G285200 chr5A 85.795 176 18 4 53 224 370493437 370493265 2.110000e-41 180.0
20 TraesCS3B01G285200 chr7D 85.795 176 14 3 53 224 347875976 347875808 2.730000e-40 176.0
21 TraesCS3B01G285200 chr7D 84.659 176 16 5 56 227 25185523 25185355 5.910000e-37 165.0
22 TraesCS3B01G285200 chr7B 84.865 185 15 6 57 236 622276152 622275976 9.820000e-40 174.0
23 TraesCS3B01G285200 chr1A 84.066 182 17 4 53 230 96294502 96294329 5.910000e-37 165.0
24 TraesCS3B01G285200 chr1A 84.393 173 16 3 56 224 133304494 133304329 2.750000e-35 159.0
25 TraesCS3B01G285200 chr1A 83.495 103 15 2 2382 2483 544177349 544177248 7.870000e-16 95.3
26 TraesCS3B01G285200 chr1D 83.237 173 17 7 57 224 307440328 307440163 5.950000e-32 148.0
27 TraesCS3B01G285200 chr1D 83.495 103 15 2 2382 2483 448283857 448283756 7.870000e-16 95.3
28 TraesCS3B01G285200 chr1D 86.486 74 9 1 2376 2449 332703275 332703347 2.200000e-11 80.5
29 TraesCS3B01G285200 chr6A 82.386 176 22 5 53 224 516054768 516054598 7.700000e-31 145.0
30 TraesCS3B01G285200 chr1B 84.615 104 12 2 2382 2483 614184013 614183912 1.690000e-17 100.0
31 TraesCS3B01G285200 chr5B 97.143 35 1 0 1 35 208696950 208696984 2.870000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G285200 chr3B 456674207 456676875 2668 True 1716.333333 4929 90.303333 1 2669 3 chr3B.!!$R1 2668
1 TraesCS3B01G285200 chr3D 355705272 355710596 5324 True 494.828571 1602 88.571571 226 2669 7 chr3D.!!$R1 2443
2 TraesCS3B01G285200 chr3A 474677592 474679649 2057 True 589.600000 1245 89.522400 609 2669 5 chr3A.!!$R1 2060
3 TraesCS3B01G285200 chr2D 60765030 60765916 886 True 952.000000 952 86.072000 759 1669 1 chr2D.!!$R1 910
4 TraesCS3B01G285200 chr2A 61295311 61296239 928 True 946.000000 946 85.592000 764 1669 1 chr2A.!!$R1 905
5 TraesCS3B01G285200 chr2B 95218971 95219640 669 True 763.000000 763 87.313000 1003 1669 1 chr2B.!!$R1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 3492 0.1078 AGACATCGCAGCAGCTTGAT 60.108 50.0 0.0 0.0 39.1 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2523 5571 0.108329 CCCAGTACACCATCGACACC 60.108 60.0 0.0 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.098679 AGAGTCTTGTCAAAGATCTTGATCG 58.901 40.000 9.17 0.00 44.18 3.69
25 26 4.629200 AGTCTTGTCAAAGATCTTGATCGC 59.371 41.667 9.17 0.00 44.18 4.58
26 27 4.389992 GTCTTGTCAAAGATCTTGATCGCA 59.610 41.667 9.17 1.89 44.18 5.10
27 28 4.389992 TCTTGTCAAAGATCTTGATCGCAC 59.610 41.667 9.17 0.84 37.51 5.34
28 29 3.930336 TGTCAAAGATCTTGATCGCACT 58.070 40.909 9.17 0.00 0.00 4.40
29 30 3.681417 TGTCAAAGATCTTGATCGCACTG 59.319 43.478 9.17 0.81 0.00 3.66
30 31 3.681897 GTCAAAGATCTTGATCGCACTGT 59.318 43.478 9.17 0.00 0.00 3.55
31 32 3.681417 TCAAAGATCTTGATCGCACTGTG 59.319 43.478 9.17 2.76 0.00 3.66
32 33 3.599730 AAGATCTTGATCGCACTGTGA 57.400 42.857 12.86 0.00 0.00 3.58
33 34 3.599730 AGATCTTGATCGCACTGTGAA 57.400 42.857 12.86 0.00 0.00 3.18
34 35 3.257393 AGATCTTGATCGCACTGTGAAC 58.743 45.455 12.86 0.00 0.00 3.18
35 36 1.795768 TCTTGATCGCACTGTGAACC 58.204 50.000 12.86 0.00 0.00 3.62
36 37 1.069978 TCTTGATCGCACTGTGAACCA 59.930 47.619 12.86 0.42 0.00 3.67
37 38 1.872952 CTTGATCGCACTGTGAACCAA 59.127 47.619 12.86 8.27 0.00 3.67
38 39 1.511850 TGATCGCACTGTGAACCAAG 58.488 50.000 12.86 0.00 0.00 3.61
39 40 1.069978 TGATCGCACTGTGAACCAAGA 59.930 47.619 12.86 0.94 0.00 3.02
40 41 1.461127 GATCGCACTGTGAACCAAGAC 59.539 52.381 12.86 0.00 0.00 3.01
41 42 0.874175 TCGCACTGTGAACCAAGACG 60.874 55.000 12.86 2.93 0.00 4.18
42 43 1.279840 GCACTGTGAACCAAGACGC 59.720 57.895 12.86 0.00 0.00 5.19
43 44 1.436195 GCACTGTGAACCAAGACGCA 61.436 55.000 12.86 0.00 0.00 5.24
44 45 0.304705 CACTGTGAACCAAGACGCAC 59.695 55.000 0.32 0.00 0.00 5.34
45 46 1.151777 ACTGTGAACCAAGACGCACG 61.152 55.000 0.00 0.00 34.12 5.34
46 47 1.831389 CTGTGAACCAAGACGCACGG 61.831 60.000 0.00 0.00 34.12 4.94
47 48 2.970324 TGAACCAAGACGCACGGC 60.970 61.111 0.00 0.00 0.00 5.68
48 49 2.665185 GAACCAAGACGCACGGCT 60.665 61.111 0.00 0.00 32.88 5.52
49 50 2.203153 AACCAAGACGCACGGCTT 60.203 55.556 5.06 5.06 45.77 4.35
50 51 0.947180 GAACCAAGACGCACGGCTTA 60.947 55.000 11.39 0.00 42.42 3.09
51 52 0.949105 AACCAAGACGCACGGCTTAG 60.949 55.000 11.39 6.68 42.42 2.18
52 53 1.080093 CCAAGACGCACGGCTTAGA 60.080 57.895 11.39 0.00 42.42 2.10
53 54 0.460284 CCAAGACGCACGGCTTAGAT 60.460 55.000 11.39 0.00 42.42 1.98
54 55 0.647410 CAAGACGCACGGCTTAGATG 59.353 55.000 11.39 0.00 42.42 2.90
55 56 0.530744 AAGACGCACGGCTTAGATGA 59.469 50.000 9.89 0.00 42.51 2.92
56 57 0.747255 AGACGCACGGCTTAGATGAT 59.253 50.000 0.00 0.00 0.00 2.45
57 58 1.954382 AGACGCACGGCTTAGATGATA 59.046 47.619 0.00 0.00 0.00 2.15
58 59 2.052157 GACGCACGGCTTAGATGATAC 58.948 52.381 0.00 0.00 0.00 2.24
59 60 1.681793 ACGCACGGCTTAGATGATACT 59.318 47.619 0.00 0.00 0.00 2.12
60 61 2.287668 ACGCACGGCTTAGATGATACTC 60.288 50.000 0.00 0.00 0.00 2.59
61 62 2.678324 GCACGGCTTAGATGATACTCC 58.322 52.381 0.00 0.00 0.00 3.85
62 63 2.610727 GCACGGCTTAGATGATACTCCC 60.611 54.545 0.00 0.00 0.00 4.30
63 64 2.894126 CACGGCTTAGATGATACTCCCT 59.106 50.000 0.00 0.00 0.00 4.20
64 65 3.057174 CACGGCTTAGATGATACTCCCTC 60.057 52.174 0.00 0.00 0.00 4.30
65 66 2.494073 CGGCTTAGATGATACTCCCTCC 59.506 54.545 0.00 0.00 0.00 4.30
66 67 2.494073 GGCTTAGATGATACTCCCTCCG 59.506 54.545 0.00 0.00 0.00 4.63
67 68 3.158676 GCTTAGATGATACTCCCTCCGT 58.841 50.000 0.00 0.00 0.00 4.69
68 69 3.574826 GCTTAGATGATACTCCCTCCGTT 59.425 47.826 0.00 0.00 0.00 4.44
69 70 4.321378 GCTTAGATGATACTCCCTCCGTTC 60.321 50.000 0.00 0.00 0.00 3.95
70 71 2.599677 AGATGATACTCCCTCCGTTCC 58.400 52.381 0.00 0.00 0.00 3.62
71 72 2.178106 AGATGATACTCCCTCCGTTCCT 59.822 50.000 0.00 0.00 0.00 3.36
72 73 3.398292 AGATGATACTCCCTCCGTTCCTA 59.602 47.826 0.00 0.00 0.00 2.94
73 74 3.675348 TGATACTCCCTCCGTTCCTAA 57.325 47.619 0.00 0.00 0.00 2.69
74 75 3.985127 TGATACTCCCTCCGTTCCTAAA 58.015 45.455 0.00 0.00 0.00 1.85
75 76 4.553678 TGATACTCCCTCCGTTCCTAAAT 58.446 43.478 0.00 0.00 0.00 1.40
76 77 5.708544 TGATACTCCCTCCGTTCCTAAATA 58.291 41.667 0.00 0.00 0.00 1.40
77 78 6.320518 TGATACTCCCTCCGTTCCTAAATAT 58.679 40.000 0.00 0.00 0.00 1.28
78 79 6.785963 TGATACTCCCTCCGTTCCTAAATATT 59.214 38.462 0.00 0.00 0.00 1.28
79 80 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
80 81 8.731591 ATACTCCCTCCGTTCCTAAATATTTA 57.268 34.615 7.66 7.66 0.00 1.40
81 82 7.628501 ACTCCCTCCGTTCCTAAATATTTAT 57.371 36.000 8.34 0.00 0.00 1.40
82 83 7.677892 ACTCCCTCCGTTCCTAAATATTTATC 58.322 38.462 8.34 0.61 0.00 1.75
83 84 7.291651 ACTCCCTCCGTTCCTAAATATTTATCA 59.708 37.037 8.34 0.00 0.00 2.15
84 85 8.214721 TCCCTCCGTTCCTAAATATTTATCAT 57.785 34.615 8.34 0.00 0.00 2.45
85 86 8.665906 TCCCTCCGTTCCTAAATATTTATCATT 58.334 33.333 8.34 0.00 0.00 2.57
86 87 9.297037 CCCTCCGTTCCTAAATATTTATCATTT 57.703 33.333 8.34 0.00 0.00 2.32
122 123 3.382227 TGGACTACCACATACACCATACG 59.618 47.826 0.00 0.00 41.77 3.06
123 124 3.243636 GGACTACCACATACACCATACGG 60.244 52.174 0.00 0.00 35.97 4.02
124 125 3.633525 GACTACCACATACACCATACGGA 59.366 47.826 0.00 0.00 35.59 4.69
125 126 4.220724 ACTACCACATACACCATACGGAT 58.779 43.478 0.00 0.00 35.59 4.18
126 127 3.469008 ACCACATACACCATACGGATG 57.531 47.619 0.00 0.00 35.59 3.51
127 128 2.769663 ACCACATACACCATACGGATGT 59.230 45.455 6.92 0.00 35.59 3.06
128 129 3.962063 ACCACATACACCATACGGATGTA 59.038 43.478 6.92 0.00 35.59 2.29
129 130 4.591498 ACCACATACACCATACGGATGTAT 59.409 41.667 6.92 0.00 42.03 2.29
130 131 5.776208 ACCACATACACCATACGGATGTATA 59.224 40.000 6.92 0.00 39.28 1.47
131 132 6.439375 ACCACATACACCATACGGATGTATAT 59.561 38.462 6.92 0.00 39.28 0.86
132 133 7.616542 ACCACATACACCATACGGATGTATATA 59.383 37.037 6.92 0.00 39.28 0.86
133 134 8.135529 CCACATACACCATACGGATGTATATAG 58.864 40.741 6.92 0.00 39.28 1.31
134 135 8.899771 CACATACACCATACGGATGTATATAGA 58.100 37.037 6.92 0.00 39.28 1.98
135 136 8.900781 ACATACACCATACGGATGTATATAGAC 58.099 37.037 6.92 0.00 39.28 2.59
136 137 8.899771 CATACACCATACGGATGTATATAGACA 58.100 37.037 6.92 2.07 39.28 3.41
137 138 7.956328 ACACCATACGGATGTATATAGACAT 57.044 36.000 12.70 12.70 42.82 3.06
139 140 9.642343 ACACCATACGGATGTATATAGACATAT 57.358 33.333 12.82 5.08 40.18 1.78
167 168 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
168 169 6.233434 AGTGTAGATTCACTCATTTTGCTCA 58.767 36.000 0.00 0.00 44.07 4.26
169 170 6.883217 AGTGTAGATTCACTCATTTTGCTCAT 59.117 34.615 0.00 0.00 44.07 2.90
170 171 6.965500 GTGTAGATTCACTCATTTTGCTCATG 59.035 38.462 0.00 0.00 35.68 3.07
171 172 6.656270 TGTAGATTCACTCATTTTGCTCATGT 59.344 34.615 0.00 0.00 0.00 3.21
172 173 7.823799 TGTAGATTCACTCATTTTGCTCATGTA 59.176 33.333 0.00 0.00 0.00 2.29
173 174 7.317842 AGATTCACTCATTTTGCTCATGTAG 57.682 36.000 0.00 0.00 0.00 2.74
174 175 6.883217 AGATTCACTCATTTTGCTCATGTAGT 59.117 34.615 0.00 0.00 0.00 2.73
175 176 6.486253 TTCACTCATTTTGCTCATGTAGTC 57.514 37.500 0.00 0.00 0.00 2.59
176 177 5.550290 TCACTCATTTTGCTCATGTAGTCA 58.450 37.500 0.00 0.00 0.00 3.41
177 178 5.409520 TCACTCATTTTGCTCATGTAGTCAC 59.590 40.000 0.00 0.00 0.00 3.67
178 179 5.410746 CACTCATTTTGCTCATGTAGTCACT 59.589 40.000 0.00 0.00 0.00 3.41
179 180 5.641209 ACTCATTTTGCTCATGTAGTCACTC 59.359 40.000 0.00 0.00 0.00 3.51
180 181 4.627035 TCATTTTGCTCATGTAGTCACTCG 59.373 41.667 0.00 0.00 0.00 4.18
181 182 3.660501 TTTGCTCATGTAGTCACTCGT 57.339 42.857 0.00 0.00 0.00 4.18
182 183 3.660501 TTGCTCATGTAGTCACTCGTT 57.339 42.857 0.00 0.00 0.00 3.85
183 184 2.946564 TGCTCATGTAGTCACTCGTTG 58.053 47.619 0.00 0.00 0.00 4.10
184 185 2.556622 TGCTCATGTAGTCACTCGTTGA 59.443 45.455 0.00 0.00 0.00 3.18
185 186 3.175152 GCTCATGTAGTCACTCGTTGAG 58.825 50.000 6.48 6.48 33.71 3.02
186 187 3.366476 GCTCATGTAGTCACTCGTTGAGT 60.366 47.826 10.76 0.00 44.44 3.41
187 188 4.799678 CTCATGTAGTCACTCGTTGAGTT 58.200 43.478 0.00 0.00 41.37 3.01
188 189 5.196341 TCATGTAGTCACTCGTTGAGTTT 57.804 39.130 0.00 0.00 41.37 2.66
189 190 5.597806 TCATGTAGTCACTCGTTGAGTTTT 58.402 37.500 0.00 0.00 41.37 2.43
190 191 5.690409 TCATGTAGTCACTCGTTGAGTTTTC 59.310 40.000 0.00 0.00 41.37 2.29
191 192 5.258456 TGTAGTCACTCGTTGAGTTTTCT 57.742 39.130 0.00 0.00 41.37 2.52
192 193 6.381481 TGTAGTCACTCGTTGAGTTTTCTA 57.619 37.500 0.00 0.00 41.37 2.10
193 194 6.436261 TGTAGTCACTCGTTGAGTTTTCTAG 58.564 40.000 0.00 0.00 41.37 2.43
194 195 5.769484 AGTCACTCGTTGAGTTTTCTAGA 57.231 39.130 0.00 0.00 41.37 2.43
195 196 6.145338 AGTCACTCGTTGAGTTTTCTAGAA 57.855 37.500 0.00 0.00 41.37 2.10
196 197 6.570692 AGTCACTCGTTGAGTTTTCTAGAAA 58.429 36.000 13.99 13.99 41.37 2.52
197 198 7.039882 AGTCACTCGTTGAGTTTTCTAGAAAA 58.960 34.615 23.65 23.65 41.37 2.29
198 199 7.548075 AGTCACTCGTTGAGTTTTCTAGAAAAA 59.452 33.333 27.81 13.30 41.37 1.94
199 200 7.635202 GTCACTCGTTGAGTTTTCTAGAAAAAC 59.365 37.037 27.81 23.42 41.37 2.43
200 201 7.332430 TCACTCGTTGAGTTTTCTAGAAAAACA 59.668 33.333 27.81 25.19 41.37 2.83
201 202 7.960738 CACTCGTTGAGTTTTCTAGAAAAACAA 59.039 33.333 27.81 28.14 41.37 2.83
202 203 8.508875 ACTCGTTGAGTTTTCTAGAAAAACAAA 58.491 29.630 30.87 22.74 40.28 2.83
203 204 9.503427 CTCGTTGAGTTTTCTAGAAAAACAAAT 57.497 29.630 30.87 18.75 41.37 2.32
204 205 9.284594 TCGTTGAGTTTTCTAGAAAAACAAATG 57.715 29.630 30.87 27.27 41.37 2.32
205 206 9.072294 CGTTGAGTTTTCTAGAAAAACAAATGT 57.928 29.630 30.87 15.63 41.37 2.71
214 215 9.724839 TTCTAGAAAAACAAATGTTTAGGAACG 57.275 29.630 11.60 1.30 46.47 3.95
215 216 8.347035 TCTAGAAAAACAAATGTTTAGGAACGG 58.653 33.333 11.60 1.54 46.47 4.44
216 217 7.102847 AGAAAAACAAATGTTTAGGAACGGA 57.897 32.000 11.60 0.00 46.47 4.69
217 218 7.200455 AGAAAAACAAATGTTTAGGAACGGAG 58.800 34.615 11.60 0.00 46.47 4.63
218 219 5.447624 AAACAAATGTTTAGGAACGGAGG 57.552 39.130 9.67 0.00 45.47 4.30
219 220 4.360951 ACAAATGTTTAGGAACGGAGGA 57.639 40.909 0.00 0.00 38.65 3.71
220 221 4.721132 ACAAATGTTTAGGAACGGAGGAA 58.279 39.130 0.00 0.00 38.65 3.36
221 222 4.760204 ACAAATGTTTAGGAACGGAGGAAG 59.240 41.667 0.00 0.00 38.65 3.46
222 223 4.635699 AATGTTTAGGAACGGAGGAAGT 57.364 40.909 0.00 0.00 38.65 3.01
223 224 5.750352 AATGTTTAGGAACGGAGGAAGTA 57.250 39.130 0.00 0.00 38.65 2.24
224 225 4.796038 TGTTTAGGAACGGAGGAAGTAG 57.204 45.455 0.00 0.00 38.65 2.57
225 226 4.410099 TGTTTAGGAACGGAGGAAGTAGA 58.590 43.478 0.00 0.00 38.65 2.59
226 227 4.834496 TGTTTAGGAACGGAGGAAGTAGAA 59.166 41.667 0.00 0.00 38.65 2.10
227 228 5.482878 TGTTTAGGAACGGAGGAAGTAGAAT 59.517 40.000 0.00 0.00 38.65 2.40
228 229 5.593679 TTAGGAACGGAGGAAGTAGAATG 57.406 43.478 0.00 0.00 0.00 2.67
229 230 3.442076 AGGAACGGAGGAAGTAGAATGT 58.558 45.455 0.00 0.00 0.00 2.71
230 231 3.838903 AGGAACGGAGGAAGTAGAATGTT 59.161 43.478 0.00 0.00 0.00 2.71
231 232 4.286291 AGGAACGGAGGAAGTAGAATGTTT 59.714 41.667 0.00 0.00 0.00 2.83
232 233 5.001874 GGAACGGAGGAAGTAGAATGTTTT 58.998 41.667 0.00 0.00 0.00 2.43
233 234 6.013984 AGGAACGGAGGAAGTAGAATGTTTTA 60.014 38.462 0.00 0.00 0.00 1.52
234 235 6.652062 GGAACGGAGGAAGTAGAATGTTTTAA 59.348 38.462 0.00 0.00 0.00 1.52
235 236 7.148457 GGAACGGAGGAAGTAGAATGTTTTAAG 60.148 40.741 0.00 0.00 0.00 1.85
236 237 6.766429 ACGGAGGAAGTAGAATGTTTTAAGT 58.234 36.000 0.00 0.00 0.00 2.24
237 238 6.649557 ACGGAGGAAGTAGAATGTTTTAAGTG 59.350 38.462 0.00 0.00 0.00 3.16
259 260 8.225603 AGTGAATCTAAAAAGCTCAAAACTCA 57.774 30.769 0.00 0.00 0.00 3.41
262 263 8.131100 TGAATCTAAAAAGCTCAAAACTCACAG 58.869 33.333 0.00 0.00 0.00 3.66
316 317 2.347697 TGTCATCACCGAAGAAGACG 57.652 50.000 7.55 0.00 38.65 4.18
336 338 6.007703 AGACGGGAATGAATTTACAAAGGAA 58.992 36.000 0.00 0.00 0.00 3.36
368 370 9.602568 TTAACTAGTGATTACGAAAATATGGCA 57.397 29.630 0.00 0.00 0.00 4.92
369 371 7.715265 ACTAGTGATTACGAAAATATGGCAG 57.285 36.000 0.00 0.00 0.00 4.85
370 372 6.706270 ACTAGTGATTACGAAAATATGGCAGG 59.294 38.462 0.00 0.00 0.00 4.85
371 373 5.437060 AGTGATTACGAAAATATGGCAGGT 58.563 37.500 0.00 0.00 0.00 4.00
372 374 5.885912 AGTGATTACGAAAATATGGCAGGTT 59.114 36.000 0.00 0.00 0.00 3.50
373 375 6.377146 AGTGATTACGAAAATATGGCAGGTTT 59.623 34.615 0.00 0.00 0.00 3.27
374 376 7.033185 GTGATTACGAAAATATGGCAGGTTTT 58.967 34.615 11.07 11.07 0.00 2.43
375 377 7.009174 GTGATTACGAAAATATGGCAGGTTTTG 59.991 37.037 14.79 10.34 0.00 2.44
376 378 4.186856 ACGAAAATATGGCAGGTTTTGG 57.813 40.909 14.79 15.16 0.00 3.28
377 379 3.056179 ACGAAAATATGGCAGGTTTTGGG 60.056 43.478 18.85 12.61 0.00 4.12
378 380 3.056179 CGAAAATATGGCAGGTTTTGGGT 60.056 43.478 14.79 0.00 0.00 4.51
379 381 4.503910 GAAAATATGGCAGGTTTTGGGTC 58.496 43.478 14.79 0.94 0.00 4.46
380 382 3.473113 AATATGGCAGGTTTTGGGTCT 57.527 42.857 0.00 0.00 0.00 3.85
381 383 2.507407 TATGGCAGGTTTTGGGTCTC 57.493 50.000 0.00 0.00 0.00 3.36
382 384 0.251787 ATGGCAGGTTTTGGGTCTCC 60.252 55.000 0.00 0.00 0.00 3.71
383 385 1.152830 GGCAGGTTTTGGGTCTCCA 59.847 57.895 0.00 0.00 42.25 3.86
384 386 1.179174 GGCAGGTTTTGGGTCTCCAC 61.179 60.000 0.00 0.00 43.94 4.02
426 428 1.531739 TTTCATTGCGCCTTGGTCCC 61.532 55.000 4.18 0.00 0.00 4.46
454 456 2.438975 CACCGCAGCCCACATGAT 60.439 61.111 0.00 0.00 0.00 2.45
455 457 2.438975 ACCGCAGCCCACATGATG 60.439 61.111 0.00 0.00 0.00 3.07
465 467 2.118679 CCCACATGATGACAGGAGGTA 58.881 52.381 0.00 0.00 36.97 3.08
513 908 3.140814 GACCGGCCATTTCCCAGC 61.141 66.667 0.00 0.00 0.00 4.85
517 912 2.761213 GGCCATTTCCCAGCCAGG 60.761 66.667 0.00 0.00 46.34 4.45
521 916 1.693640 CATTTCCCAGCCAGGAGGT 59.306 57.895 0.00 0.00 41.22 3.85
563 3477 1.610038 CACAAATGGAAGCAGCAGACA 59.390 47.619 0.00 0.00 0.00 3.41
567 3481 1.094073 ATGGAAGCAGCAGACATCGC 61.094 55.000 0.00 0.00 0.00 4.58
578 3492 0.107800 AGACATCGCAGCAGCTTGAT 60.108 50.000 0.00 0.00 39.10 2.57
589 3503 1.202009 GCAGCTTGATTCGAAGAGCAC 60.202 52.381 24.03 15.77 38.43 4.40
598 3512 4.373116 GAAGAGCACCGCACCCGA 62.373 66.667 0.00 0.00 36.29 5.14
599 3513 3.665675 GAAGAGCACCGCACCCGAT 62.666 63.158 0.00 0.00 36.29 4.18
600 3514 3.254024 AAGAGCACCGCACCCGATT 62.254 57.895 0.00 0.00 36.29 3.34
601 3515 3.499737 GAGCACCGCACCCGATTG 61.500 66.667 0.00 0.00 36.29 2.67
605 3519 4.424711 ACCGCACCCGATTGGCAT 62.425 61.111 0.00 0.00 37.83 4.40
606 3520 3.140141 CCGCACCCGATTGGCATT 61.140 61.111 0.00 0.00 37.83 3.56
607 3521 2.709883 CCGCACCCGATTGGCATTT 61.710 57.895 0.00 0.00 37.83 2.32
664 3587 0.179111 CGCTGCGGGAAATCTGAGTA 60.179 55.000 15.40 0.00 0.00 2.59
686 3609 2.600731 CCATACGGGGCCCAATGT 59.399 61.111 26.86 20.88 0.00 2.71
723 3646 1.334992 CGACAAACGCTGACGACGAT 61.335 55.000 0.00 0.00 44.50 3.73
748 3671 4.185286 GCCCCTTCCGCCCGTTAT 62.185 66.667 0.00 0.00 0.00 1.89
749 3672 2.110420 CCCCTTCCGCCCGTTATC 59.890 66.667 0.00 0.00 0.00 1.75
750 3673 2.737881 CCCCTTCCGCCCGTTATCA 61.738 63.158 0.00 0.00 0.00 2.15
751 3674 1.450211 CCCTTCCGCCCGTTATCAT 59.550 57.895 0.00 0.00 0.00 2.45
752 3675 0.179029 CCCTTCCGCCCGTTATCATT 60.179 55.000 0.00 0.00 0.00 2.57
753 3676 0.944386 CCTTCCGCCCGTTATCATTG 59.056 55.000 0.00 0.00 0.00 2.82
754 3677 0.944386 CTTCCGCCCGTTATCATTGG 59.056 55.000 0.00 0.00 0.00 3.16
755 3678 0.253610 TTCCGCCCGTTATCATTGGT 59.746 50.000 0.00 0.00 0.00 3.67
756 3679 0.253610 TCCGCCCGTTATCATTGGTT 59.746 50.000 0.00 0.00 0.00 3.67
757 3680 0.380378 CCGCCCGTTATCATTGGTTG 59.620 55.000 0.00 0.00 0.00 3.77
828 3753 1.199789 GCAACAGCATCGGTCAATCAA 59.800 47.619 0.00 0.00 0.00 2.57
833 3772 3.949754 ACAGCATCGGTCAATCAATCATT 59.050 39.130 0.00 0.00 0.00 2.57
834 3773 4.036027 ACAGCATCGGTCAATCAATCATTC 59.964 41.667 0.00 0.00 0.00 2.67
845 3784 1.212688 TCAATCATTCCCCGTGCATCT 59.787 47.619 0.00 0.00 0.00 2.90
992 3952 3.303001 GCCTAGGATCGATATACGTACGC 60.303 52.174 16.72 0.00 43.13 4.42
1016 3984 4.950062 GATGGCATCGGCTCGCGA 62.950 66.667 12.40 9.26 40.87 5.87
1639 4610 0.107703 GGGCGAAGATGATGTCACCA 60.108 55.000 0.00 0.00 0.00 4.17
1723 4711 1.195115 ATCCACTGCAGTATCCGTGT 58.805 50.000 21.20 0.00 0.00 4.49
1732 4720 2.289547 GCAGTATCCGTGTGTTTGTTGT 59.710 45.455 0.00 0.00 0.00 3.32
1734 4722 4.024725 GCAGTATCCGTGTGTTTGTTGTTA 60.025 41.667 0.00 0.00 0.00 2.41
1751 4739 3.341823 TGTTAGTCTCTGTACCCGACTC 58.658 50.000 10.80 1.88 38.77 3.36
1752 4740 3.008813 TGTTAGTCTCTGTACCCGACTCT 59.991 47.826 10.80 1.46 38.77 3.24
1754 4742 2.713877 AGTCTCTGTACCCGACTCTTC 58.286 52.381 3.73 0.00 32.93 2.87
1767 4755 4.142447 CCCGACTCTTCTGAGATCGTTTTA 60.142 45.833 2.99 0.00 42.73 1.52
1771 4759 6.021074 CGACTCTTCTGAGATCGTTTTATGTG 60.021 42.308 0.00 0.00 42.73 3.21
1774 4762 6.925211 TCTTCTGAGATCGTTTTATGTGTCT 58.075 36.000 0.00 0.00 0.00 3.41
1775 4763 7.030165 TCTTCTGAGATCGTTTTATGTGTCTC 58.970 38.462 0.00 0.00 34.25 3.36
1776 4764 5.651530 TCTGAGATCGTTTTATGTGTCTCC 58.348 41.667 0.00 0.00 33.04 3.71
1777 4765 4.755411 TGAGATCGTTTTATGTGTCTCCC 58.245 43.478 0.00 0.00 33.04 4.30
1778 4766 3.782046 AGATCGTTTTATGTGTCTCCCG 58.218 45.455 0.00 0.00 0.00 5.14
1779 4767 3.194968 AGATCGTTTTATGTGTCTCCCGT 59.805 43.478 0.00 0.00 0.00 5.28
1780 4768 2.679450 TCGTTTTATGTGTCTCCCGTG 58.321 47.619 0.00 0.00 0.00 4.94
1781 4769 2.036217 TCGTTTTATGTGTCTCCCGTGT 59.964 45.455 0.00 0.00 0.00 4.49
1785 4773 1.471119 TATGTGTCTCCCGTGTCTCC 58.529 55.000 0.00 0.00 0.00 3.71
1786 4774 1.595993 ATGTGTCTCCCGTGTCTCCG 61.596 60.000 0.00 0.00 0.00 4.63
1787 4775 2.114625 TGTCTCCCGTGTCTCCGT 59.885 61.111 0.00 0.00 0.00 4.69
1788 4776 2.265904 TGTCTCCCGTGTCTCCGTG 61.266 63.158 0.00 0.00 0.00 4.94
1789 4777 2.114625 TCTCCCGTGTCTCCGTGT 59.885 61.111 0.00 0.00 0.00 4.49
1790 4778 2.258591 CTCCCGTGTCTCCGTGTG 59.741 66.667 0.00 0.00 0.00 3.82
1791 4779 3.916392 CTCCCGTGTCTCCGTGTGC 62.916 68.421 0.00 0.00 0.00 4.57
1795 4783 2.738521 GTGTCTCCGTGTGCGCAT 60.739 61.111 15.91 0.00 36.67 4.73
1796 4784 1.445410 GTGTCTCCGTGTGCGCATA 60.445 57.895 15.91 8.59 36.67 3.14
1797 4785 0.806102 GTGTCTCCGTGTGCGCATAT 60.806 55.000 15.91 0.00 36.67 1.78
1798 4786 0.108377 TGTCTCCGTGTGCGCATATT 60.108 50.000 15.91 0.00 36.67 1.28
1799 4787 0.577269 GTCTCCGTGTGCGCATATTC 59.423 55.000 15.91 0.00 36.67 1.75
1800 4788 0.174617 TCTCCGTGTGCGCATATTCA 59.825 50.000 15.91 3.18 36.67 2.57
1823 4811 5.063691 CACAAGAACAAGTTACGGTTGTGTA 59.936 40.000 15.03 0.00 38.17 2.90
1825 4813 5.917541 AGAACAAGTTACGGTTGTGTATG 57.082 39.130 0.64 0.00 38.17 2.39
1827 4815 5.818857 AGAACAAGTTACGGTTGTGTATGTT 59.181 36.000 0.64 0.00 38.17 2.71
1830 4818 5.175491 ACAAGTTACGGTTGTGTATGTTACG 59.825 40.000 0.00 0.00 36.76 3.18
1831 4819 5.119931 AGTTACGGTTGTGTATGTTACGA 57.880 39.130 0.00 0.00 0.00 3.43
1832 4820 5.527951 AGTTACGGTTGTGTATGTTACGAA 58.472 37.500 0.00 0.00 0.00 3.85
1833 4821 6.158598 AGTTACGGTTGTGTATGTTACGAAT 58.841 36.000 0.00 0.00 0.00 3.34
1835 4823 7.812191 AGTTACGGTTGTGTATGTTACGAATTA 59.188 33.333 0.00 0.00 0.00 1.40
1836 4824 8.431593 GTTACGGTTGTGTATGTTACGAATTAA 58.568 33.333 0.00 0.00 0.00 1.40
1837 4825 7.418840 ACGGTTGTGTATGTTACGAATTAAA 57.581 32.000 0.00 0.00 0.00 1.52
1838 4826 7.512297 ACGGTTGTGTATGTTACGAATTAAAG 58.488 34.615 0.00 0.00 0.00 1.85
1839 4827 6.957077 CGGTTGTGTATGTTACGAATTAAAGG 59.043 38.462 0.00 0.00 0.00 3.11
1840 4828 7.148606 CGGTTGTGTATGTTACGAATTAAAGGA 60.149 37.037 0.00 0.00 0.00 3.36
1842 4830 7.280730 TGTGTATGTTACGAATTAAAGGACG 57.719 36.000 0.00 0.00 0.00 4.79
1843 4831 6.867816 TGTGTATGTTACGAATTAAAGGACGT 59.132 34.615 0.00 0.00 41.66 4.34
1844 4832 7.148771 TGTGTATGTTACGAATTAAAGGACGTG 60.149 37.037 0.00 0.00 39.28 4.49
1845 4833 6.867816 TGTATGTTACGAATTAAAGGACGTGT 59.132 34.615 0.00 0.00 39.28 4.49
1846 4834 6.790285 ATGTTACGAATTAAAGGACGTGTT 57.210 33.333 0.00 0.00 39.28 3.32
1848 4836 7.887996 TGTTACGAATTAAAGGACGTGTTAT 57.112 32.000 0.00 0.00 39.28 1.89
1849 4837 8.309163 TGTTACGAATTAAAGGACGTGTTATT 57.691 30.769 0.00 0.00 39.28 1.40
1850 4838 8.222433 TGTTACGAATTAAAGGACGTGTTATTG 58.778 33.333 0.00 0.00 39.28 1.90
1851 4839 5.624292 ACGAATTAAAGGACGTGTTATTGC 58.376 37.500 0.00 0.00 37.58 3.56
1852 4840 5.025826 CGAATTAAAGGACGTGTTATTGCC 58.974 41.667 0.00 0.00 0.00 4.52
1853 4841 5.391097 CGAATTAAAGGACGTGTTATTGCCA 60.391 40.000 0.00 0.00 0.00 4.92
1854 4842 4.752661 TTAAAGGACGTGTTATTGCCAC 57.247 40.909 0.00 0.00 0.00 5.01
1855 4843 2.264005 AAGGACGTGTTATTGCCACA 57.736 45.000 0.00 0.00 33.00 4.17
1856 4844 1.519408 AGGACGTGTTATTGCCACAC 58.481 50.000 0.00 0.00 41.08 3.82
1857 4845 1.071699 AGGACGTGTTATTGCCACACT 59.928 47.619 0.00 0.00 42.13 3.55
1858 4846 1.196808 GGACGTGTTATTGCCACACTG 59.803 52.381 0.00 0.00 42.13 3.66
1859 4847 0.591170 ACGTGTTATTGCCACACTGC 59.409 50.000 0.00 0.00 42.13 4.40
1860 4848 0.590682 CGTGTTATTGCCACACTGCA 59.409 50.000 2.00 0.00 42.13 4.41
1862 4850 2.351641 CGTGTTATTGCCACACTGCATT 60.352 45.455 0.00 0.00 42.13 3.56
1863 4851 3.120025 CGTGTTATTGCCACACTGCATTA 60.120 43.478 0.00 0.00 42.13 1.90
1864 4852 4.165779 GTGTTATTGCCACACTGCATTAC 58.834 43.478 0.00 0.00 41.70 1.89
1865 4853 3.823304 TGTTATTGCCACACTGCATTACA 59.177 39.130 0.00 0.00 41.70 2.41
1921 4955 4.225942 TGTGAACAGGATTAGCCAAGAGAT 59.774 41.667 0.00 0.00 40.02 2.75
1922 4956 4.574013 GTGAACAGGATTAGCCAAGAGATG 59.426 45.833 0.00 0.00 40.02 2.90
1923 4957 4.471025 TGAACAGGATTAGCCAAGAGATGA 59.529 41.667 0.00 0.00 40.02 2.92
1924 4958 5.045651 TGAACAGGATTAGCCAAGAGATGAA 60.046 40.000 0.00 0.00 40.02 2.57
1925 4959 5.033589 ACAGGATTAGCCAAGAGATGAAG 57.966 43.478 0.00 0.00 40.02 3.02
1926 4960 4.718774 ACAGGATTAGCCAAGAGATGAAGA 59.281 41.667 0.00 0.00 40.02 2.87
1927 4961 5.163322 ACAGGATTAGCCAAGAGATGAAGAG 60.163 44.000 0.00 0.00 40.02 2.85
1928 4962 5.070180 CAGGATTAGCCAAGAGATGAAGAGA 59.930 44.000 0.00 0.00 40.02 3.10
1929 4963 5.305128 AGGATTAGCCAAGAGATGAAGAGAG 59.695 44.000 0.00 0.00 40.02 3.20
1932 4966 6.458232 TTAGCCAAGAGATGAAGAGAGTAC 57.542 41.667 0.00 0.00 0.00 2.73
1951 4985 9.235537 GAGAGTACGATTCCAACTTTATTAGAC 57.764 37.037 0.00 0.00 0.00 2.59
1989 5023 0.179936 GCATGGAAGGGAGGAGTCAG 59.820 60.000 0.00 0.00 0.00 3.51
2031 5066 5.464030 TGTCTAGGTCCTGACAAGTTAAC 57.536 43.478 16.98 0.00 39.82 2.01
2033 5068 5.010719 TGTCTAGGTCCTGACAAGTTAACAG 59.989 44.000 16.98 2.39 39.82 3.16
2076 5112 2.808543 AGAAACAAAGTGGCGACAGATC 59.191 45.455 0.00 0.00 44.46 2.75
2094 5130 6.849502 ACAGATCGACACGTAGAAATAGAAA 58.150 36.000 0.00 0.00 0.00 2.52
2096 5132 7.974501 ACAGATCGACACGTAGAAATAGAAATT 59.025 33.333 0.00 0.00 0.00 1.82
2097 5133 8.262588 CAGATCGACACGTAGAAATAGAAATTG 58.737 37.037 0.00 0.00 0.00 2.32
2099 5135 8.697846 ATCGACACGTAGAAATAGAAATTGAA 57.302 30.769 0.00 0.00 0.00 2.69
2102 5138 9.069078 CGACACGTAGAAATAGAAATTGAACTA 57.931 33.333 0.00 0.00 0.00 2.24
2106 5142 8.827677 ACGTAGAAATAGAAATTGAACTATGGC 58.172 33.333 0.00 0.00 30.98 4.40
2107 5143 9.046296 CGTAGAAATAGAAATTGAACTATGGCT 57.954 33.333 0.00 0.00 30.98 4.75
2114 5150 9.995003 ATAGAAATTGAACTATGGCTTAGAGAG 57.005 33.333 13.76 0.00 0.00 3.20
2128 5164 4.462483 GCTTAGAGAGAGATACATCAGGGG 59.538 50.000 0.00 0.00 0.00 4.79
2131 5167 0.605589 GAGAGATACATCAGGGGCGG 59.394 60.000 0.00 0.00 0.00 6.13
2132 5168 0.833834 AGAGATACATCAGGGGCGGG 60.834 60.000 0.00 0.00 0.00 6.13
2142 5178 3.758931 GGGGCGGGTTGACAATGC 61.759 66.667 0.00 0.00 0.00 3.56
2166 5204 2.969950 CGATTAGTAATCCCTGGTCCCA 59.030 50.000 15.70 0.00 34.35 4.37
2184 5222 0.037697 CAGGCTTGTACGTGCTGGTA 60.038 55.000 4.97 0.00 0.00 3.25
2503 5551 2.728817 CGATGTAGCTCCCGGTCC 59.271 66.667 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.220378 GCGATCAAGATCTTTGACAAGACTC 60.220 44.000 4.86 0.74 42.05 3.36
2 3 4.629200 GCGATCAAGATCTTTGACAAGACT 59.371 41.667 4.86 0.00 42.05 3.24
5 6 4.391216 AGTGCGATCAAGATCTTTGACAAG 59.609 41.667 4.86 0.00 35.72 3.16
7 8 3.681417 CAGTGCGATCAAGATCTTTGACA 59.319 43.478 4.86 0.00 35.72 3.58
8 9 3.681897 ACAGTGCGATCAAGATCTTTGAC 59.318 43.478 4.86 0.00 35.72 3.18
9 10 3.681417 CACAGTGCGATCAAGATCTTTGA 59.319 43.478 4.86 7.58 35.72 2.69
10 11 3.681417 TCACAGTGCGATCAAGATCTTTG 59.319 43.478 4.86 1.51 35.72 2.77
11 12 3.930336 TCACAGTGCGATCAAGATCTTT 58.070 40.909 4.86 0.00 35.72 2.52
13 14 3.257393 GTTCACAGTGCGATCAAGATCT 58.743 45.455 8.30 0.00 35.72 2.75
14 15 2.349886 GGTTCACAGTGCGATCAAGATC 59.650 50.000 0.00 0.00 34.56 2.75
15 16 2.289631 TGGTTCACAGTGCGATCAAGAT 60.290 45.455 0.00 0.00 0.00 2.40
16 17 1.069978 TGGTTCACAGTGCGATCAAGA 59.930 47.619 0.00 0.00 0.00 3.02
17 18 1.511850 TGGTTCACAGTGCGATCAAG 58.488 50.000 0.00 0.00 0.00 3.02
18 19 1.872952 CTTGGTTCACAGTGCGATCAA 59.127 47.619 0.00 0.00 0.00 2.57
19 20 1.069978 TCTTGGTTCACAGTGCGATCA 59.930 47.619 0.00 0.00 0.00 2.92
20 21 1.461127 GTCTTGGTTCACAGTGCGATC 59.539 52.381 0.00 0.00 0.00 3.69
21 22 1.512926 GTCTTGGTTCACAGTGCGAT 58.487 50.000 0.00 0.00 0.00 4.58
22 23 0.874175 CGTCTTGGTTCACAGTGCGA 60.874 55.000 0.00 0.00 0.00 5.10
23 24 1.564622 CGTCTTGGTTCACAGTGCG 59.435 57.895 0.00 0.00 0.00 5.34
24 25 1.279840 GCGTCTTGGTTCACAGTGC 59.720 57.895 0.00 0.00 0.00 4.40
25 26 0.304705 GTGCGTCTTGGTTCACAGTG 59.695 55.000 0.00 0.00 0.00 3.66
26 27 1.151777 CGTGCGTCTTGGTTCACAGT 61.152 55.000 0.00 0.00 0.00 3.55
27 28 1.564622 CGTGCGTCTTGGTTCACAG 59.435 57.895 0.00 0.00 0.00 3.66
28 29 1.885388 CCGTGCGTCTTGGTTCACA 60.885 57.895 0.00 0.00 0.00 3.58
29 30 2.935955 CCGTGCGTCTTGGTTCAC 59.064 61.111 0.00 0.00 0.00 3.18
30 31 2.933878 AAGCCGTGCGTCTTGGTTCA 62.934 55.000 0.00 0.00 0.00 3.18
31 32 0.947180 TAAGCCGTGCGTCTTGGTTC 60.947 55.000 0.00 0.00 0.00 3.62
32 33 0.949105 CTAAGCCGTGCGTCTTGGTT 60.949 55.000 0.00 0.00 0.00 3.67
33 34 1.374252 CTAAGCCGTGCGTCTTGGT 60.374 57.895 0.00 0.00 0.00 3.67
34 35 0.460284 ATCTAAGCCGTGCGTCTTGG 60.460 55.000 0.00 0.00 0.00 3.61
35 36 0.647410 CATCTAAGCCGTGCGTCTTG 59.353 55.000 0.00 0.00 0.00 3.02
36 37 0.530744 TCATCTAAGCCGTGCGTCTT 59.469 50.000 0.00 0.00 0.00 3.01
37 38 0.747255 ATCATCTAAGCCGTGCGTCT 59.253 50.000 0.00 0.00 0.00 4.18
38 39 2.052157 GTATCATCTAAGCCGTGCGTC 58.948 52.381 0.00 0.00 0.00 5.19
39 40 1.681793 AGTATCATCTAAGCCGTGCGT 59.318 47.619 0.00 0.00 0.00 5.24
40 41 2.320367 GAGTATCATCTAAGCCGTGCG 58.680 52.381 0.00 0.00 33.17 5.34
41 42 2.610727 GGGAGTATCATCTAAGCCGTGC 60.611 54.545 0.00 0.00 36.25 5.34
42 43 2.894126 AGGGAGTATCATCTAAGCCGTG 59.106 50.000 0.00 0.00 36.25 4.94
43 44 3.158676 GAGGGAGTATCATCTAAGCCGT 58.841 50.000 0.00 0.00 36.25 5.68
44 45 2.494073 GGAGGGAGTATCATCTAAGCCG 59.506 54.545 0.00 0.00 36.25 5.52
45 46 2.494073 CGGAGGGAGTATCATCTAAGCC 59.506 54.545 0.00 0.00 36.25 4.35
46 47 3.158676 ACGGAGGGAGTATCATCTAAGC 58.841 50.000 0.00 0.00 36.25 3.09
47 48 4.218852 GGAACGGAGGGAGTATCATCTAAG 59.781 50.000 0.00 0.00 36.25 2.18
48 49 4.140994 AGGAACGGAGGGAGTATCATCTAA 60.141 45.833 0.00 0.00 36.25 2.10
49 50 3.398292 AGGAACGGAGGGAGTATCATCTA 59.602 47.826 0.00 0.00 36.25 1.98
50 51 2.178106 AGGAACGGAGGGAGTATCATCT 59.822 50.000 0.00 0.00 36.25 2.90
51 52 2.599677 AGGAACGGAGGGAGTATCATC 58.400 52.381 0.00 0.00 36.25 2.92
52 53 2.777459 AGGAACGGAGGGAGTATCAT 57.223 50.000 0.00 0.00 36.25 2.45
53 54 3.675348 TTAGGAACGGAGGGAGTATCA 57.325 47.619 0.00 0.00 36.25 2.15
54 55 6.854091 ATATTTAGGAACGGAGGGAGTATC 57.146 41.667 0.00 0.00 0.00 2.24
55 56 7.628501 AAATATTTAGGAACGGAGGGAGTAT 57.371 36.000 0.00 0.00 0.00 2.12
56 57 8.731591 ATAAATATTTAGGAACGGAGGGAGTA 57.268 34.615 13.15 0.00 0.00 2.59
57 58 5.970501 AAATATTTAGGAACGGAGGGAGT 57.029 39.130 0.00 0.00 0.00 3.85
58 59 7.676947 TGATAAATATTTAGGAACGGAGGGAG 58.323 38.462 13.15 0.00 0.00 4.30
59 60 7.621006 TGATAAATATTTAGGAACGGAGGGA 57.379 36.000 13.15 0.00 0.00 4.20
60 61 8.863872 AATGATAAATATTTAGGAACGGAGGG 57.136 34.615 13.15 0.00 0.00 4.30
83 84 9.753674 TGGTAGTCCATTTGAGATCTTTAAAAT 57.246 29.630 0.00 1.60 39.03 1.82
84 85 9.010029 GTGGTAGTCCATTTGAGATCTTTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
85 86 8.160765 TGTGGTAGTCCATTTGAGATCTTTAAA 58.839 33.333 0.00 2.58 46.20 1.52
86 87 7.685481 TGTGGTAGTCCATTTGAGATCTTTAA 58.315 34.615 0.00 0.00 46.20 1.52
87 88 7.252612 TGTGGTAGTCCATTTGAGATCTTTA 57.747 36.000 0.00 0.00 46.20 1.85
88 89 6.126863 TGTGGTAGTCCATTTGAGATCTTT 57.873 37.500 0.00 0.00 46.20 2.52
89 90 5.762179 TGTGGTAGTCCATTTGAGATCTT 57.238 39.130 0.00 0.00 46.20 2.40
90 91 5.965033 ATGTGGTAGTCCATTTGAGATCT 57.035 39.130 0.00 0.00 46.20 2.75
91 92 6.480320 GTGTATGTGGTAGTCCATTTGAGATC 59.520 42.308 0.00 0.00 46.20 2.75
92 93 6.349300 GTGTATGTGGTAGTCCATTTGAGAT 58.651 40.000 0.00 0.00 46.20 2.75
93 94 5.338056 GGTGTATGTGGTAGTCCATTTGAGA 60.338 44.000 0.00 0.00 46.20 3.27
94 95 4.876107 GGTGTATGTGGTAGTCCATTTGAG 59.124 45.833 0.00 0.00 46.20 3.02
95 96 4.287326 TGGTGTATGTGGTAGTCCATTTGA 59.713 41.667 0.00 0.00 46.20 2.69
96 97 4.584874 TGGTGTATGTGGTAGTCCATTTG 58.415 43.478 0.00 0.00 46.20 2.32
97 98 4.919774 TGGTGTATGTGGTAGTCCATTT 57.080 40.909 0.00 0.00 46.20 2.32
98 99 5.452776 CGTATGGTGTATGTGGTAGTCCATT 60.453 44.000 0.00 0.00 46.20 3.16
99 100 4.038763 CGTATGGTGTATGTGGTAGTCCAT 59.961 45.833 0.00 0.00 46.20 3.41
100 101 3.382227 CGTATGGTGTATGTGGTAGTCCA 59.618 47.826 0.00 0.00 42.05 4.02
101 102 3.243636 CCGTATGGTGTATGTGGTAGTCC 60.244 52.174 0.00 0.00 0.00 3.85
102 103 3.633525 TCCGTATGGTGTATGTGGTAGTC 59.366 47.826 0.00 0.00 36.30 2.59
103 104 3.634504 TCCGTATGGTGTATGTGGTAGT 58.365 45.455 0.00 0.00 36.30 2.73
104 105 4.038763 ACATCCGTATGGTGTATGTGGTAG 59.961 45.833 6.09 0.00 37.43 3.18
105 106 3.962063 ACATCCGTATGGTGTATGTGGTA 59.038 43.478 6.09 0.00 37.43 3.25
106 107 2.769663 ACATCCGTATGGTGTATGTGGT 59.230 45.455 6.09 0.00 37.43 4.16
107 108 3.469008 ACATCCGTATGGTGTATGTGG 57.531 47.619 6.09 0.00 37.43 4.17
108 109 8.899771 TCTATATACATCCGTATGGTGTATGTG 58.100 37.037 24.62 18.07 40.04 3.21
109 110 8.900781 GTCTATATACATCCGTATGGTGTATGT 58.099 37.037 24.62 22.10 40.04 2.29
110 111 8.899771 TGTCTATATACATCCGTATGGTGTATG 58.100 37.037 24.62 15.23 40.04 2.39
111 112 9.642343 ATGTCTATATACATCCGTATGGTGTAT 57.358 33.333 22.13 22.13 41.35 2.29
113 114 7.956328 ATGTCTATATACATCCGTATGGTGT 57.044 36.000 12.09 12.09 38.79 4.16
145 146 6.486253 TGAGCAAAATGAGTGAATCTACAC 57.514 37.500 0.00 0.00 40.60 2.90
146 147 6.656270 ACATGAGCAAAATGAGTGAATCTACA 59.344 34.615 0.00 0.00 0.00 2.74
147 148 7.081526 ACATGAGCAAAATGAGTGAATCTAC 57.918 36.000 0.00 0.00 0.00 2.59
148 149 8.043113 ACTACATGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
149 150 6.883217 ACTACATGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
150 151 7.081526 ACTACATGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
151 152 6.656270 TGACTACATGAGCAAAATGAGTGAAT 59.344 34.615 0.00 0.00 0.00 2.57
152 153 5.997129 TGACTACATGAGCAAAATGAGTGAA 59.003 36.000 0.00 0.00 0.00 3.18
153 154 5.409520 GTGACTACATGAGCAAAATGAGTGA 59.590 40.000 0.00 0.00 0.00 3.41
154 155 5.410746 AGTGACTACATGAGCAAAATGAGTG 59.589 40.000 0.00 0.00 0.00 3.51
155 156 5.555017 AGTGACTACATGAGCAAAATGAGT 58.445 37.500 0.00 1.03 0.00 3.41
156 157 5.220359 CGAGTGACTACATGAGCAAAATGAG 60.220 44.000 0.00 0.00 0.00 2.90
157 158 4.627035 CGAGTGACTACATGAGCAAAATGA 59.373 41.667 0.00 0.00 0.00 2.57
158 159 4.389992 ACGAGTGACTACATGAGCAAAATG 59.610 41.667 0.00 0.00 0.00 2.32
159 160 4.569943 ACGAGTGACTACATGAGCAAAAT 58.430 39.130 0.00 0.00 0.00 1.82
160 161 3.990092 ACGAGTGACTACATGAGCAAAA 58.010 40.909 0.00 0.00 0.00 2.44
161 162 3.660501 ACGAGTGACTACATGAGCAAA 57.339 42.857 0.00 0.00 0.00 3.68
162 163 3.005367 TCAACGAGTGACTACATGAGCAA 59.995 43.478 0.00 0.00 0.00 3.91
163 164 2.556622 TCAACGAGTGACTACATGAGCA 59.443 45.455 0.00 0.00 0.00 4.26
164 165 3.175152 CTCAACGAGTGACTACATGAGC 58.825 50.000 0.00 0.00 31.13 4.26
165 166 4.427096 ACTCAACGAGTGACTACATGAG 57.573 45.455 15.28 15.28 41.76 2.90
166 167 4.848562 AACTCAACGAGTGACTACATGA 57.151 40.909 0.00 0.00 42.59 3.07
167 168 5.692204 AGAAAACTCAACGAGTGACTACATG 59.308 40.000 0.00 0.00 42.59 3.21
168 169 5.844004 AGAAAACTCAACGAGTGACTACAT 58.156 37.500 0.00 0.00 42.59 2.29
169 170 5.258456 AGAAAACTCAACGAGTGACTACA 57.742 39.130 0.00 0.00 42.59 2.74
170 171 6.666417 TCTAGAAAACTCAACGAGTGACTAC 58.334 40.000 0.00 0.00 42.59 2.73
171 172 6.872628 TCTAGAAAACTCAACGAGTGACTA 57.127 37.500 0.00 2.30 42.59 2.59
172 173 5.769484 TCTAGAAAACTCAACGAGTGACT 57.231 39.130 0.00 0.00 42.59 3.41
173 174 6.823678 TTTCTAGAAAACTCAACGAGTGAC 57.176 37.500 15.57 0.00 42.59 3.67
174 175 7.332430 TGTTTTTCTAGAAAACTCAACGAGTGA 59.668 33.333 26.47 8.04 42.59 3.41
175 176 7.461107 TGTTTTTCTAGAAAACTCAACGAGTG 58.539 34.615 26.47 0.00 42.59 3.51
176 177 7.605410 TGTTTTTCTAGAAAACTCAACGAGT 57.395 32.000 26.47 0.00 45.64 4.18
177 178 8.889849 TTTGTTTTTCTAGAAAACTCAACGAG 57.110 30.769 28.32 0.00 39.70 4.18
178 179 9.284594 CATTTGTTTTTCTAGAAAACTCAACGA 57.715 29.630 28.32 21.59 39.70 3.85
179 180 9.072294 ACATTTGTTTTTCTAGAAAACTCAACG 57.928 29.630 28.32 25.19 39.70 4.10
188 189 9.724839 CGTTCCTAAACATTTGTTTTTCTAGAA 57.275 29.630 13.40 0.00 45.07 2.10
189 190 8.347035 CCGTTCCTAAACATTTGTTTTTCTAGA 58.653 33.333 13.40 0.00 45.07 2.43
190 191 8.347035 TCCGTTCCTAAACATTTGTTTTTCTAG 58.653 33.333 13.40 5.57 45.07 2.43
191 192 8.223177 TCCGTTCCTAAACATTTGTTTTTCTA 57.777 30.769 13.40 0.00 45.07 2.10
192 193 7.102847 TCCGTTCCTAAACATTTGTTTTTCT 57.897 32.000 13.40 0.00 45.07 2.52
193 194 6.419710 CCTCCGTTCCTAAACATTTGTTTTTC 59.580 38.462 13.40 1.53 45.07 2.29
194 195 6.097129 TCCTCCGTTCCTAAACATTTGTTTTT 59.903 34.615 13.40 0.00 45.07 1.94
195 196 5.595133 TCCTCCGTTCCTAAACATTTGTTTT 59.405 36.000 13.40 0.00 45.07 2.43
197 198 4.721132 TCCTCCGTTCCTAAACATTTGTT 58.279 39.130 0.00 0.00 40.50 2.83
198 199 4.360951 TCCTCCGTTCCTAAACATTTGT 57.639 40.909 0.00 0.00 34.93 2.83
199 200 4.760204 ACTTCCTCCGTTCCTAAACATTTG 59.240 41.667 0.00 0.00 34.93 2.32
200 201 4.981812 ACTTCCTCCGTTCCTAAACATTT 58.018 39.130 0.00 0.00 34.93 2.32
201 202 4.635699 ACTTCCTCCGTTCCTAAACATT 57.364 40.909 0.00 0.00 34.93 2.71
202 203 5.021458 TCTACTTCCTCCGTTCCTAAACAT 58.979 41.667 0.00 0.00 34.93 2.71
203 204 4.410099 TCTACTTCCTCCGTTCCTAAACA 58.590 43.478 0.00 0.00 34.93 2.83
204 205 5.397142 TTCTACTTCCTCCGTTCCTAAAC 57.603 43.478 0.00 0.00 0.00 2.01
205 206 5.482878 ACATTCTACTTCCTCCGTTCCTAAA 59.517 40.000 0.00 0.00 0.00 1.85
206 207 5.021458 ACATTCTACTTCCTCCGTTCCTAA 58.979 41.667 0.00 0.00 0.00 2.69
207 208 4.607239 ACATTCTACTTCCTCCGTTCCTA 58.393 43.478 0.00 0.00 0.00 2.94
208 209 3.442076 ACATTCTACTTCCTCCGTTCCT 58.558 45.455 0.00 0.00 0.00 3.36
209 210 3.889520 ACATTCTACTTCCTCCGTTCC 57.110 47.619 0.00 0.00 0.00 3.62
210 211 7.387122 ACTTAAAACATTCTACTTCCTCCGTTC 59.613 37.037 0.00 0.00 0.00 3.95
211 212 7.172703 CACTTAAAACATTCTACTTCCTCCGTT 59.827 37.037 0.00 0.00 0.00 4.44
212 213 6.649557 CACTTAAAACATTCTACTTCCTCCGT 59.350 38.462 0.00 0.00 0.00 4.69
213 214 6.872020 TCACTTAAAACATTCTACTTCCTCCG 59.128 38.462 0.00 0.00 0.00 4.63
214 215 8.617290 TTCACTTAAAACATTCTACTTCCTCC 57.383 34.615 0.00 0.00 0.00 4.30
233 234 8.686334 TGAGTTTTGAGCTTTTTAGATTCACTT 58.314 29.630 0.00 0.00 0.00 3.16
234 235 8.131731 GTGAGTTTTGAGCTTTTTAGATTCACT 58.868 33.333 0.00 0.00 0.00 3.41
235 236 7.915397 TGTGAGTTTTGAGCTTTTTAGATTCAC 59.085 33.333 0.00 0.00 0.00 3.18
236 237 7.995289 TGTGAGTTTTGAGCTTTTTAGATTCA 58.005 30.769 0.00 0.00 0.00 2.57
237 238 8.345565 TCTGTGAGTTTTGAGCTTTTTAGATTC 58.654 33.333 0.00 0.00 0.00 2.52
259 260 3.303990 GCGTGATGTTTGTCACAATCTGT 60.304 43.478 7.67 0.00 46.89 3.41
262 263 3.266541 TGCGTGATGTTTGTCACAATC 57.733 42.857 7.67 0.00 46.89 2.67
316 317 6.993079 AGTGTTCCTTTGTAAATTCATTCCC 58.007 36.000 0.00 0.00 0.00 3.97
317 318 7.886338 AGAGTGTTCCTTTGTAAATTCATTCC 58.114 34.615 0.00 0.00 0.00 3.01
336 338 9.924650 ATTTTCGTAATCACTAGTTAAGAGTGT 57.075 29.630 14.26 2.93 43.95 3.55
346 348 6.706270 ACCTGCCATATTTTCGTAATCACTAG 59.294 38.462 0.00 0.00 0.00 2.57
363 365 0.251787 GGAGACCCAAAACCTGCCAT 60.252 55.000 0.00 0.00 0.00 4.40
365 367 1.152830 TGGAGACCCAAAACCTGCC 59.847 57.895 0.00 0.00 40.09 4.85
367 369 1.421646 AGAGTGGAGACCCAAAACCTG 59.578 52.381 0.00 0.00 45.59 4.00
368 370 1.700186 GAGAGTGGAGACCCAAAACCT 59.300 52.381 0.00 0.00 45.59 3.50
369 371 1.271434 GGAGAGTGGAGACCCAAAACC 60.271 57.143 0.00 0.00 45.59 3.27
370 372 1.420138 TGGAGAGTGGAGACCCAAAAC 59.580 52.381 0.00 0.00 45.59 2.43
371 373 1.420138 GTGGAGAGTGGAGACCCAAAA 59.580 52.381 0.00 0.00 45.59 2.44
372 374 1.056660 GTGGAGAGTGGAGACCCAAA 58.943 55.000 0.00 0.00 45.59 3.28
373 375 0.191064 AGTGGAGAGTGGAGACCCAA 59.809 55.000 0.00 0.00 45.59 4.12
374 376 0.191064 AAGTGGAGAGTGGAGACCCA 59.809 55.000 0.00 0.00 40.95 4.51
375 377 0.610687 CAAGTGGAGAGTGGAGACCC 59.389 60.000 0.00 0.00 0.00 4.46
376 378 0.610687 CCAAGTGGAGAGTGGAGACC 59.389 60.000 0.00 0.00 37.39 3.85
377 379 1.633774 TCCAAGTGGAGAGTGGAGAC 58.366 55.000 0.00 0.00 39.78 3.36
402 404 1.533756 CCAAGGCGCAATGAAATACGG 60.534 52.381 10.83 0.00 0.00 4.02
439 441 2.124612 TCATCATGTGGGCTGCGG 60.125 61.111 0.00 0.00 0.00 5.69
442 444 0.253894 TCCTGTCATCATGTGGGCTG 59.746 55.000 0.00 0.00 0.00 4.85
448 450 1.765314 GGCTACCTCCTGTCATCATGT 59.235 52.381 0.00 0.00 0.00 3.21
449 451 1.269988 CGGCTACCTCCTGTCATCATG 60.270 57.143 0.00 0.00 0.00 3.07
450 452 1.043816 CGGCTACCTCCTGTCATCAT 58.956 55.000 0.00 0.00 0.00 2.45
451 453 1.676678 GCGGCTACCTCCTGTCATCA 61.677 60.000 0.00 0.00 0.00 3.07
452 454 1.068250 GCGGCTACCTCCTGTCATC 59.932 63.158 0.00 0.00 0.00 2.92
453 455 1.685765 TGCGGCTACCTCCTGTCAT 60.686 57.895 0.00 0.00 0.00 3.06
454 456 2.283604 TGCGGCTACCTCCTGTCA 60.284 61.111 0.00 0.00 0.00 3.58
455 457 2.184579 GTGCGGCTACCTCCTGTC 59.815 66.667 0.00 0.00 0.00 3.51
465 467 0.616371 TGTTAAGTATGGGTGCGGCT 59.384 50.000 0.00 0.00 0.00 5.52
513 908 0.532862 GACACACACACACCTCCTGG 60.533 60.000 0.00 0.00 39.83 4.45
563 3477 0.460811 TCGAATCAAGCTGCTGCGAT 60.461 50.000 1.35 5.94 45.42 4.58
567 3481 1.062294 GCTCTTCGAATCAAGCTGCTG 59.938 52.381 1.35 0.00 0.00 4.41
578 3492 2.357034 GGTGCGGTGCTCTTCGAA 60.357 61.111 0.00 0.00 0.00 3.71
589 3503 2.709883 AAATGCCAATCGGGTGCGG 61.710 57.895 0.00 0.00 39.65 5.69
686 3609 1.472480 TCGCTGTCGAGATCATGACAA 59.528 47.619 17.40 4.47 43.91 3.18
713 3636 2.120232 GGCTATGTTGATCGTCGTCAG 58.880 52.381 0.00 0.00 0.00 3.51
723 3646 1.223487 GCGGAAGGGGCTATGTTGA 59.777 57.895 0.00 0.00 0.00 3.18
748 3671 1.780309 AGTGAGGAACCCAACCAATGA 59.220 47.619 0.00 0.00 0.00 2.57
749 3672 1.888512 CAGTGAGGAACCCAACCAATG 59.111 52.381 0.00 0.00 0.00 2.82
750 3673 1.203050 CCAGTGAGGAACCCAACCAAT 60.203 52.381 0.00 0.00 41.22 3.16
751 3674 0.184933 CCAGTGAGGAACCCAACCAA 59.815 55.000 0.00 0.00 41.22 3.67
752 3675 1.843421 CCAGTGAGGAACCCAACCA 59.157 57.895 0.00 0.00 41.22 3.67
753 3676 1.603739 GCCAGTGAGGAACCCAACC 60.604 63.158 0.00 0.00 41.22 3.77
754 3677 0.890996 CAGCCAGTGAGGAACCCAAC 60.891 60.000 0.00 0.00 41.22 3.77
755 3678 1.455849 CAGCCAGTGAGGAACCCAA 59.544 57.895 0.00 0.00 41.22 4.12
756 3679 3.160585 CAGCCAGTGAGGAACCCA 58.839 61.111 0.00 0.00 41.22 4.51
757 3680 2.360475 GCAGCCAGTGAGGAACCC 60.360 66.667 0.00 0.00 41.22 4.11
828 3753 0.179009 CCAGATGCACGGGGAATGAT 60.179 55.000 0.00 0.00 0.00 2.45
833 3772 2.910360 CATCCAGATGCACGGGGA 59.090 61.111 4.70 4.70 34.65 4.81
845 3784 3.798380 CGATGAACGCAGCATCCA 58.202 55.556 0.00 0.00 39.10 3.41
1086 4057 2.948720 GCAGAAGTCCTGGAGCGGT 61.949 63.158 0.00 0.00 43.13 5.68
1275 4246 2.435059 GAGAGGCCCAGCGTGTTC 60.435 66.667 0.00 0.00 0.00 3.18
1470 4441 1.016130 CGTTGAGCTGGTAGTGCTGG 61.016 60.000 0.00 0.00 41.30 4.85
1639 4610 2.159254 CGGCGAATTTGGATTTCATGGT 60.159 45.455 0.00 0.00 0.00 3.55
1723 4711 5.362263 GGGTACAGAGACTAACAACAAACA 58.638 41.667 0.00 0.00 0.00 2.83
1732 4720 3.996921 AGAGTCGGGTACAGAGACTAA 57.003 47.619 14.35 0.00 44.30 2.24
1734 4722 2.306512 AGAAGAGTCGGGTACAGAGACT 59.693 50.000 14.30 14.30 46.61 3.24
1751 4739 6.254589 GGAGACACATAAAACGATCTCAGAAG 59.745 42.308 0.00 0.00 35.36 2.85
1752 4740 6.100004 GGAGACACATAAAACGATCTCAGAA 58.900 40.000 0.00 0.00 35.36 3.02
1754 4742 4.806247 GGGAGACACATAAAACGATCTCAG 59.194 45.833 0.00 0.00 35.36 3.35
1767 4755 1.595993 CGGAGACACGGGAGACACAT 61.596 60.000 0.00 0.00 0.00 3.21
1771 4759 2.266627 ACACGGAGACACGGGAGAC 61.267 63.158 0.00 0.00 40.35 3.36
1774 4762 3.986006 GCACACGGAGACACGGGA 61.986 66.667 0.00 0.00 40.35 5.14
1778 4766 0.806102 ATATGCGCACACGGAGACAC 60.806 55.000 14.90 0.00 45.20 3.67
1779 4767 0.108377 AATATGCGCACACGGAGACA 60.108 50.000 14.90 0.00 45.20 3.41
1780 4768 0.577269 GAATATGCGCACACGGAGAC 59.423 55.000 14.90 0.00 45.20 3.36
1781 4769 0.174617 TGAATATGCGCACACGGAGA 59.825 50.000 14.90 0.00 45.20 3.71
1785 4773 1.393196 TCTTGTGAATATGCGCACACG 59.607 47.619 14.90 2.44 43.97 4.49
1786 4774 3.163594 GTTCTTGTGAATATGCGCACAC 58.836 45.455 14.90 17.46 43.97 3.82
1787 4775 2.810852 TGTTCTTGTGAATATGCGCACA 59.189 40.909 14.90 0.00 42.73 4.57
1788 4776 3.469899 TGTTCTTGTGAATATGCGCAC 57.530 42.857 14.90 0.00 34.40 5.34
1789 4777 3.501828 ACTTGTTCTTGTGAATATGCGCA 59.498 39.130 14.96 14.96 34.40 6.09
1790 4778 4.083581 ACTTGTTCTTGTGAATATGCGC 57.916 40.909 0.00 0.00 34.40 6.09
1791 4779 5.728049 CGTAACTTGTTCTTGTGAATATGCG 59.272 40.000 0.00 0.00 34.40 4.73
1792 4780 6.021596 CCGTAACTTGTTCTTGTGAATATGC 58.978 40.000 0.00 0.00 34.40 3.14
1793 4781 7.129109 ACCGTAACTTGTTCTTGTGAATATG 57.871 36.000 0.00 0.00 34.40 1.78
1794 4782 7.227910 ACAACCGTAACTTGTTCTTGTGAATAT 59.772 33.333 0.00 0.00 34.40 1.28
1795 4783 6.539464 ACAACCGTAACTTGTTCTTGTGAATA 59.461 34.615 0.00 0.00 34.40 1.75
1796 4784 5.355910 ACAACCGTAACTTGTTCTTGTGAAT 59.644 36.000 0.00 0.00 34.40 2.57
1797 4785 4.696402 ACAACCGTAACTTGTTCTTGTGAA 59.304 37.500 0.00 0.00 0.00 3.18
1798 4786 4.093703 CACAACCGTAACTTGTTCTTGTGA 59.906 41.667 14.38 0.00 39.45 3.58
1799 4787 4.142773 ACACAACCGTAACTTGTTCTTGTG 60.143 41.667 16.20 16.20 41.69 3.33
1800 4788 4.004982 ACACAACCGTAACTTGTTCTTGT 58.995 39.130 0.00 0.00 29.02 3.16
1823 4811 6.790285 AACACGTCCTTTAATTCGTAACAT 57.210 33.333 0.00 0.00 35.13 2.71
1825 4813 7.215007 GCAATAACACGTCCTTTAATTCGTAAC 59.785 37.037 0.00 0.00 35.13 2.50
1827 4815 6.183360 GGCAATAACACGTCCTTTAATTCGTA 60.183 38.462 0.00 0.00 35.13 3.43
1830 4818 5.798434 GTGGCAATAACACGTCCTTTAATTC 59.202 40.000 0.00 0.00 0.00 2.17
1831 4819 5.241949 TGTGGCAATAACACGTCCTTTAATT 59.758 36.000 0.00 0.00 41.64 1.40
1832 4820 4.762765 TGTGGCAATAACACGTCCTTTAAT 59.237 37.500 0.00 0.00 41.64 1.40
1833 4821 4.023878 GTGTGGCAATAACACGTCCTTTAA 60.024 41.667 0.00 0.00 41.64 1.52
1835 4823 2.292292 GTGTGGCAATAACACGTCCTTT 59.708 45.455 0.00 0.00 41.64 3.11
1836 4824 1.877443 GTGTGGCAATAACACGTCCTT 59.123 47.619 0.00 0.00 41.64 3.36
1837 4825 1.519408 GTGTGGCAATAACACGTCCT 58.481 50.000 0.00 0.00 41.64 3.85
1857 4845 6.934083 TGAACTTAGTCATGAACTGTAATGCA 59.066 34.615 0.00 0.00 39.11 3.96
1858 4846 7.237173 GTGAACTTAGTCATGAACTGTAATGC 58.763 38.462 0.00 0.00 39.11 3.56
1859 4847 7.387673 TGGTGAACTTAGTCATGAACTGTAATG 59.612 37.037 0.00 0.00 39.11 1.90
1860 4848 7.450074 TGGTGAACTTAGTCATGAACTGTAAT 58.550 34.615 0.00 0.00 39.11 1.89
1862 4850 6.413783 TGGTGAACTTAGTCATGAACTGTA 57.586 37.500 0.00 0.00 39.11 2.74
1863 4851 5.290493 TGGTGAACTTAGTCATGAACTGT 57.710 39.130 0.00 0.00 39.11 3.55
1864 4852 4.692625 CCTGGTGAACTTAGTCATGAACTG 59.307 45.833 0.00 0.00 39.11 3.16
1865 4853 4.593206 TCCTGGTGAACTTAGTCATGAACT 59.407 41.667 0.00 0.00 42.33 3.01
1868 4882 4.080919 CCATCCTGGTGAACTTAGTCATGA 60.081 45.833 0.00 0.00 31.35 3.07
1877 4891 1.279271 GTACTGCCATCCTGGTGAACT 59.721 52.381 0.00 0.00 40.46 3.01
1912 4946 3.378742 TCGTACTCTCTTCATCTCTTGGC 59.621 47.826 0.00 0.00 0.00 4.52
1913 4947 5.766150 ATCGTACTCTCTTCATCTCTTGG 57.234 43.478 0.00 0.00 0.00 3.61
1914 4948 6.183360 TGGAATCGTACTCTCTTCATCTCTTG 60.183 42.308 0.00 0.00 0.00 3.02
1921 4955 5.723672 AAGTTGGAATCGTACTCTCTTCA 57.276 39.130 0.00 0.00 0.00 3.02
1922 4956 8.705048 AATAAAGTTGGAATCGTACTCTCTTC 57.295 34.615 0.00 0.00 0.00 2.87
1923 4957 9.804758 CTAATAAAGTTGGAATCGTACTCTCTT 57.195 33.333 0.00 0.00 0.00 2.85
1924 4958 9.186837 TCTAATAAAGTTGGAATCGTACTCTCT 57.813 33.333 0.00 0.00 0.00 3.10
1925 4959 9.235537 GTCTAATAAAGTTGGAATCGTACTCTC 57.764 37.037 0.00 0.00 0.00 3.20
1926 4960 8.968969 AGTCTAATAAAGTTGGAATCGTACTCT 58.031 33.333 0.00 0.00 0.00 3.24
1927 4961 9.021863 CAGTCTAATAAAGTTGGAATCGTACTC 57.978 37.037 0.00 0.00 0.00 2.59
1928 4962 8.529476 ACAGTCTAATAAAGTTGGAATCGTACT 58.471 33.333 0.00 0.00 0.00 2.73
1929 4963 8.592998 CACAGTCTAATAAAGTTGGAATCGTAC 58.407 37.037 0.00 0.00 0.00 3.67
1932 4966 7.827819 TCACAGTCTAATAAAGTTGGAATCG 57.172 36.000 0.00 0.00 0.00 3.34
1951 4985 2.159448 TGCTTGTTTCCGTGTTTCACAG 60.159 45.455 1.00 0.00 33.40 3.66
2030 5065 2.936912 GCTCACCTCGTGGAGCTGT 61.937 63.158 11.17 0.00 35.49 4.40
2031 5066 1.315981 TAGCTCACCTCGTGGAGCTG 61.316 60.000 22.98 7.86 42.33 4.24
2033 5068 0.461961 ATTAGCTCACCTCGTGGAGC 59.538 55.000 11.17 9.74 37.15 4.70
2076 5112 7.950236 AGTTCAATTTCTATTTCTACGTGTCG 58.050 34.615 0.00 0.00 0.00 4.35
2090 5126 8.083828 TCTCTCTAAGCCATAGTTCAATTTCT 57.916 34.615 0.00 0.00 33.08 2.52
2091 5127 8.200792 TCTCTCTCTAAGCCATAGTTCAATTTC 58.799 37.037 0.00 0.00 33.08 2.17
2094 5130 7.854166 ATCTCTCTCTAAGCCATAGTTCAAT 57.146 36.000 0.00 0.00 33.08 2.57
2096 5132 7.290813 TGTATCTCTCTCTAAGCCATAGTTCA 58.709 38.462 0.00 0.00 33.08 3.18
2097 5133 7.753309 TGTATCTCTCTCTAAGCCATAGTTC 57.247 40.000 0.00 0.00 33.08 3.01
2099 5135 7.465960 TGATGTATCTCTCTCTAAGCCATAGT 58.534 38.462 0.00 0.00 33.08 2.12
2102 5138 5.716228 CCTGATGTATCTCTCTCTAAGCCAT 59.284 44.000 0.00 0.00 0.00 4.40
2103 5139 5.076182 CCTGATGTATCTCTCTCTAAGCCA 58.924 45.833 0.00 0.00 0.00 4.75
2104 5140 4.462483 CCCTGATGTATCTCTCTCTAAGCC 59.538 50.000 0.00 0.00 0.00 4.35
2105 5141 4.462483 CCCCTGATGTATCTCTCTCTAAGC 59.538 50.000 0.00 0.00 0.00 3.09
2106 5142 4.462483 GCCCCTGATGTATCTCTCTCTAAG 59.538 50.000 0.00 0.00 0.00 2.18
2107 5143 4.411927 GCCCCTGATGTATCTCTCTCTAA 58.588 47.826 0.00 0.00 0.00 2.10
2108 5144 3.560239 CGCCCCTGATGTATCTCTCTCTA 60.560 52.174 0.00 0.00 0.00 2.43
2109 5145 2.817463 CGCCCCTGATGTATCTCTCTCT 60.817 54.545 0.00 0.00 0.00 3.10
2110 5146 1.543802 CGCCCCTGATGTATCTCTCTC 59.456 57.143 0.00 0.00 0.00 3.20
2114 5150 1.122019 ACCCGCCCCTGATGTATCTC 61.122 60.000 0.00 0.00 0.00 2.75
2128 5164 2.258286 GTGGCATTGTCAACCCGC 59.742 61.111 0.00 2.84 0.00 6.13
2131 5167 2.747446 ACTAATCGTGGCATTGTCAACC 59.253 45.455 0.00 0.00 0.00 3.77
2132 5168 5.539582 TTACTAATCGTGGCATTGTCAAC 57.460 39.130 0.00 0.00 0.00 3.18
2142 5178 3.244112 GGACCAGGGATTACTAATCGTGG 60.244 52.174 18.86 18.86 43.34 4.94
2166 5204 0.902531 ATACCAGCACGTACAAGCCT 59.097 50.000 3.15 0.00 0.00 4.58
2184 5222 3.782443 GACGTCCCCGCCAAGGAT 61.782 66.667 3.51 0.00 45.00 3.24
2220 5258 3.467226 ACGATCGGAATGGGCGGT 61.467 61.111 20.98 0.00 0.00 5.68
2371 5419 1.464608 CCTCGTGCAGGTACATTGTTG 59.535 52.381 6.26 0.00 37.53 3.33
2483 5531 2.838225 CCGGGAGCTACATCGGGT 60.838 66.667 5.77 0.00 38.93 5.28
2523 5571 0.108329 CCCAGTACACCATCGACACC 60.108 60.000 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.