Multiple sequence alignment - TraesCS3B01G285100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G285100 chr3B 100.000 2849 0 0 1 2849 456672879 456675727 0.000000e+00 5262.0
1 TraesCS3B01G285100 chr3B 76.048 334 54 21 1260 1586 456674051 456674365 1.770000e-32 150.0
2 TraesCS3B01G285100 chr3B 76.048 334 54 21 1173 1487 456674138 456674464 1.770000e-32 150.0
3 TraesCS3B01G285100 chr3D 93.544 1487 56 26 623 2104 355704584 355706035 0.000000e+00 2178.0
4 TraesCS3B01G285100 chr3D 98.432 574 9 0 2276 2849 355706254 355706827 0.000000e+00 1011.0
5 TraesCS3B01G285100 chr3D 82.909 275 26 7 327 580 328436803 328436529 7.940000e-56 228.0
6 TraesCS3B01G285100 chr3D 76.647 334 52 20 1173 1487 355705203 355705529 8.170000e-36 161.0
7 TraesCS3B01G285100 chr3D 75.214 351 61 21 1260 1603 355705116 355705447 2.960000e-30 143.0
8 TraesCS3B01G285100 chr3A 93.350 1188 51 22 929 2104 474677192 474678363 0.000000e+00 1731.0
9 TraesCS3B01G285100 chr3A 98.432 574 9 0 2276 2849 474678582 474679155 0.000000e+00 1011.0
10 TraesCS3B01G285100 chr3A 94.737 323 15 2 632 953 474676860 474677181 4.240000e-138 501.0
11 TraesCS3B01G285100 chr3A 76.418 335 51 22 1173 1487 474677523 474677849 3.800000e-34 156.0
12 TraesCS3B01G285100 chr3A 75.783 351 59 20 1260 1603 474677436 474677767 1.370000e-33 154.0
13 TraesCS3B01G285100 chr3A 76.174 298 49 15 324 609 727989198 727989485 1.380000e-28 137.0
14 TraesCS3B01G285100 chr2D 92.131 521 41 0 2329 2849 60765030 60765550 0.000000e+00 736.0
15 TraesCS3B01G285100 chr2A 91.555 521 44 0 2329 2849 61295311 61295831 0.000000e+00 719.0
16 TraesCS3B01G285100 chr2A 84.188 234 34 3 375 606 571487631 571487863 1.030000e-54 224.0
17 TraesCS3B01G285100 chr2B 88.868 521 58 0 2329 2849 95218971 95219491 2.390000e-180 641.0
18 TraesCS3B01G285100 chr2B 77.855 289 32 15 319 577 95255657 95255943 1.770000e-32 150.0
19 TraesCS3B01G285100 chr6B 86.134 238 29 4 378 613 530508146 530507911 1.310000e-63 254.0
20 TraesCS3B01G285100 chr6B 83.465 127 7 6 327 439 64201191 64201317 3.880000e-19 106.0
21 TraesCS3B01G285100 chr6A 85.537 242 25 5 375 611 169188440 169188676 7.880000e-61 244.0
22 TraesCS3B01G285100 chr6A 84.746 236 26 6 361 587 609114215 609114449 7.940000e-56 228.0
23 TraesCS3B01G285100 chr6A 79.359 281 30 15 327 581 485326371 485326649 3.770000e-39 172.0
24 TraesCS3B01G285100 chr6A 78.947 95 15 4 1 92 544162651 544162559 3.070000e-05 60.2
25 TraesCS3B01G285100 chr6D 87.379 206 26 0 375 580 411556396 411556601 1.320000e-58 237.0
26 TraesCS3B01G285100 chr5B 85.841 226 25 3 385 609 531526640 531526421 1.710000e-57 233.0
27 TraesCS3B01G285100 chr5B 92.683 41 3 0 52 92 438801148 438801188 3.070000e-05 60.2
28 TraesCS3B01G285100 chr4A 84.746 236 33 3 375 608 585565820 585566054 1.710000e-57 233.0
29 TraesCS3B01G285100 chr4A 83.936 249 25 6 375 613 581915444 581915201 1.030000e-54 224.0
30 TraesCS3B01G285100 chr4A 88.235 51 6 0 42 92 722017420 722017470 8.520000e-06 62.1
31 TraesCS3B01G285100 chr7A 82.890 263 32 8 327 580 296587153 296586895 1.030000e-54 224.0
32 TraesCS3B01G285100 chr7A 80.935 278 32 7 323 580 213723903 213723627 1.730000e-47 200.0
33 TraesCS3B01G285100 chr7A 79.054 296 34 11 327 603 239238841 239239127 8.110000e-41 178.0
34 TraesCS3B01G285100 chr5D 78.512 242 27 10 327 543 490604328 490604087 4.950000e-28 135.0
35 TraesCS3B01G285100 chr1B 84.615 104 12 2 1515 1616 614183912 614184013 1.810000e-17 100.0
36 TraesCS3B01G285100 chr1B 87.037 54 7 0 52 105 671433284 671433337 8.520000e-06 62.1
37 TraesCS3B01G285100 chr1D 83.495 103 15 2 1515 1616 448283756 448283857 8.400000e-16 95.3
38 TraesCS3B01G285100 chr1D 86.486 74 9 1 1549 1622 332703347 332703275 2.350000e-11 80.5
39 TraesCS3B01G285100 chr1A 83.495 103 15 2 1515 1616 544177248 544177349 8.400000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G285100 chr3B 456672879 456675727 2848 False 1854.00 5262 84.03200 1 2849 3 chr3B.!!$F1 2848
1 TraesCS3B01G285100 chr3D 355704584 355706827 2243 False 873.25 2178 85.95925 623 2849 4 chr3D.!!$F1 2226
2 TraesCS3B01G285100 chr3A 474676860 474679155 2295 False 710.60 1731 87.74400 632 2849 5 chr3A.!!$F2 2217
3 TraesCS3B01G285100 chr2D 60765030 60765550 520 False 736.00 736 92.13100 2329 2849 1 chr2D.!!$F1 520
4 TraesCS3B01G285100 chr2A 61295311 61295831 520 False 719.00 719 91.55500 2329 2849 1 chr2A.!!$F1 520
5 TraesCS3B01G285100 chr2B 95218971 95219491 520 False 641.00 641 88.86800 2329 2849 1 chr2B.!!$F1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.029433 GGGCTCGATTTGGCGAATTC 59.971 55.0 0.58 0.0 40.13 2.17 F
309 310 0.035820 GTAACCGAGCCCATCACCAA 60.036 55.0 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1859 0.037697 CAGGCTTGTACGTGCTGGTA 60.038 55.0 4.97 0.00 0.00 3.25 R
2196 2293 0.174617 TCTCCGTGTGCGCATATTCA 59.825 50.0 15.91 3.18 36.67 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.867233 CTGTTCCTCGGGAATTATGCG 59.133 52.381 8.36 0.00 44.04 4.73
21 22 1.226746 GTTCCTCGGGAATTATGCGG 58.773 55.000 8.36 0.00 44.04 5.69
22 23 0.107831 TTCCTCGGGAATTATGCGGG 59.892 55.000 1.68 0.00 36.71 6.13
23 24 1.966451 CCTCGGGAATTATGCGGGC 60.966 63.158 0.00 0.00 0.00 6.13
24 25 1.227823 CTCGGGAATTATGCGGGCA 60.228 57.895 0.00 0.00 0.00 5.36
25 26 0.817634 CTCGGGAATTATGCGGGCAA 60.818 55.000 0.00 0.00 0.00 4.52
26 27 0.394488 TCGGGAATTATGCGGGCAAA 60.394 50.000 0.00 0.00 0.00 3.68
27 28 0.457851 CGGGAATTATGCGGGCAAAA 59.542 50.000 0.00 0.00 0.00 2.44
28 29 1.068434 CGGGAATTATGCGGGCAAAAT 59.932 47.619 0.00 0.00 0.00 1.82
29 30 2.482839 CGGGAATTATGCGGGCAAAATT 60.483 45.455 0.00 0.00 0.00 1.82
30 31 2.871633 GGGAATTATGCGGGCAAAATTG 59.128 45.455 0.00 0.00 0.00 2.32
31 32 3.530535 GGAATTATGCGGGCAAAATTGT 58.469 40.909 0.00 0.00 0.00 2.71
32 33 3.938334 GGAATTATGCGGGCAAAATTGTT 59.062 39.130 0.00 0.00 0.00 2.83
33 34 4.394610 GGAATTATGCGGGCAAAATTGTTT 59.605 37.500 0.00 0.00 0.00 2.83
34 35 5.106357 GGAATTATGCGGGCAAAATTGTTTT 60.106 36.000 0.00 0.00 0.00 2.43
35 36 4.999751 TTATGCGGGCAAAATTGTTTTC 57.000 36.364 0.00 0.00 0.00 2.29
36 37 2.315925 TGCGGGCAAAATTGTTTTCA 57.684 40.000 0.00 0.00 0.00 2.69
37 38 2.632377 TGCGGGCAAAATTGTTTTCAA 58.368 38.095 0.00 0.00 44.33 2.69
61 62 9.081997 CAATCTATTCGATATCACTTTAGAGGC 57.918 37.037 3.12 0.00 0.00 4.70
62 63 8.588290 ATCTATTCGATATCACTTTAGAGGCT 57.412 34.615 3.12 0.00 0.00 4.58
63 64 9.688091 ATCTATTCGATATCACTTTAGAGGCTA 57.312 33.333 3.12 0.00 0.00 3.93
64 65 9.688091 TCTATTCGATATCACTTTAGAGGCTAT 57.312 33.333 3.12 0.00 0.00 2.97
95 96 8.986477 ATAAAACATTGCAAAGACTTATGGAC 57.014 30.769 8.96 0.00 0.00 4.02
96 97 5.391312 AACATTGCAAAGACTTATGGACC 57.609 39.130 8.96 0.00 0.00 4.46
97 98 4.406456 ACATTGCAAAGACTTATGGACCA 58.594 39.130 8.96 0.00 0.00 4.02
98 99 4.832266 ACATTGCAAAGACTTATGGACCAA 59.168 37.500 8.96 0.00 0.00 3.67
99 100 5.304101 ACATTGCAAAGACTTATGGACCAAA 59.696 36.000 8.96 0.00 0.00 3.28
100 101 5.860941 TTGCAAAGACTTATGGACCAAAA 57.139 34.783 0.00 0.00 0.00 2.44
101 102 6.418057 TTGCAAAGACTTATGGACCAAAAT 57.582 33.333 0.00 0.00 0.00 1.82
102 103 6.418057 TGCAAAGACTTATGGACCAAAATT 57.582 33.333 0.00 0.00 0.00 1.82
103 104 6.222389 TGCAAAGACTTATGGACCAAAATTG 58.778 36.000 0.00 0.00 0.00 2.32
104 105 6.041409 TGCAAAGACTTATGGACCAAAATTGA 59.959 34.615 0.00 0.00 0.00 2.57
105 106 6.928492 GCAAAGACTTATGGACCAAAATTGAA 59.072 34.615 0.00 0.00 0.00 2.69
106 107 7.116805 GCAAAGACTTATGGACCAAAATTGAAG 59.883 37.037 0.00 0.00 0.00 3.02
107 108 6.272822 AGACTTATGGACCAAAATTGAAGC 57.727 37.500 0.00 0.00 0.00 3.86
108 109 5.774690 AGACTTATGGACCAAAATTGAAGCA 59.225 36.000 0.00 0.00 0.00 3.91
109 110 6.438425 AGACTTATGGACCAAAATTGAAGCAT 59.562 34.615 0.00 0.00 0.00 3.79
110 111 7.615365 AGACTTATGGACCAAAATTGAAGCATA 59.385 33.333 0.00 0.00 0.00 3.14
111 112 8.133024 ACTTATGGACCAAAATTGAAGCATAA 57.867 30.769 0.00 0.00 0.00 1.90
112 113 8.761689 ACTTATGGACCAAAATTGAAGCATAAT 58.238 29.630 0.00 0.00 0.00 1.28
113 114 9.603921 CTTATGGACCAAAATTGAAGCATAATT 57.396 29.630 0.00 0.00 0.00 1.40
114 115 7.852971 ATGGACCAAAATTGAAGCATAATTG 57.147 32.000 0.00 0.00 0.00 2.32
115 116 6.767456 TGGACCAAAATTGAAGCATAATTGT 58.233 32.000 0.00 0.00 0.00 2.71
116 117 7.222872 TGGACCAAAATTGAAGCATAATTGTT 58.777 30.769 0.00 0.00 0.00 2.83
117 118 7.718753 TGGACCAAAATTGAAGCATAATTGTTT 59.281 29.630 0.00 0.00 0.00 2.83
118 119 8.567104 GGACCAAAATTGAAGCATAATTGTTTT 58.433 29.630 0.00 0.00 0.00 2.43
119 120 9.597999 GACCAAAATTGAAGCATAATTGTTTTC 57.402 29.630 0.00 0.00 0.00 2.29
120 121 9.118300 ACCAAAATTGAAGCATAATTGTTTTCA 57.882 25.926 0.00 0.00 31.31 2.69
121 122 9.947669 CCAAAATTGAAGCATAATTGTTTTCAA 57.052 25.926 11.53 11.53 44.33 2.69
134 135 6.770746 ATTGTTTTCAATCTCTCTCCATGG 57.229 37.500 4.97 4.97 46.18 3.66
135 136 4.012374 TGTTTTCAATCTCTCTCCATGGC 58.988 43.478 6.96 0.00 0.00 4.40
136 137 4.263639 TGTTTTCAATCTCTCTCCATGGCT 60.264 41.667 6.96 0.00 0.00 4.75
137 138 3.555527 TTCAATCTCTCTCCATGGCTG 57.444 47.619 6.96 2.21 0.00 4.85
138 139 1.140452 TCAATCTCTCTCCATGGCTGC 59.860 52.381 6.96 0.00 0.00 5.25
139 140 1.141254 CAATCTCTCTCCATGGCTGCT 59.859 52.381 6.96 0.00 0.00 4.24
140 141 0.759959 ATCTCTCTCCATGGCTGCTG 59.240 55.000 6.96 0.00 0.00 4.41
141 142 1.146485 CTCTCTCCATGGCTGCTGG 59.854 63.158 6.96 0.00 34.93 4.85
142 143 1.614525 TCTCTCCATGGCTGCTGGT 60.615 57.895 6.96 0.00 35.19 4.00
143 144 1.153208 CTCTCCATGGCTGCTGGTC 60.153 63.158 6.96 0.00 35.19 4.02
144 145 2.513204 CTCCATGGCTGCTGGTCG 60.513 66.667 6.96 0.00 35.19 4.79
145 146 4.100084 TCCATGGCTGCTGGTCGG 62.100 66.667 6.96 0.00 35.19 4.79
152 153 3.200593 CTGCTGGTCGGCATGCTC 61.201 66.667 18.92 6.88 41.63 4.26
153 154 3.677284 CTGCTGGTCGGCATGCTCT 62.677 63.158 18.92 0.00 41.63 4.09
154 155 2.302199 CTGCTGGTCGGCATGCTCTA 62.302 60.000 18.92 5.87 41.63 2.43
155 156 1.593750 GCTGGTCGGCATGCTCTAG 60.594 63.158 18.92 15.49 0.00 2.43
156 157 1.068753 CTGGTCGGCATGCTCTAGG 59.931 63.158 18.92 2.41 0.00 3.02
157 158 2.280457 GGTCGGCATGCTCTAGGC 60.280 66.667 18.92 8.26 42.22 3.93
163 164 1.732308 GCATGCTCTAGGCCAAAGC 59.268 57.895 11.37 11.48 40.92 3.51
167 168 2.332063 TGCTCTAGGCCAAAGCATAC 57.668 50.000 19.26 2.35 40.91 2.39
168 169 1.221414 GCTCTAGGCCAAAGCATACG 58.779 55.000 16.51 0.00 42.56 3.06
169 170 1.221414 CTCTAGGCCAAAGCATACGC 58.779 55.000 5.01 0.00 42.56 4.42
170 171 0.539518 TCTAGGCCAAAGCATACGCA 59.460 50.000 5.01 0.00 42.56 5.24
171 172 1.065782 TCTAGGCCAAAGCATACGCAA 60.066 47.619 5.01 0.00 42.56 4.85
172 173 1.742831 CTAGGCCAAAGCATACGCAAA 59.257 47.619 5.01 0.00 42.56 3.68
173 174 0.527565 AGGCCAAAGCATACGCAAAG 59.472 50.000 5.01 0.00 42.56 2.77
174 175 1.078201 GGCCAAAGCATACGCAAAGC 61.078 55.000 0.00 0.00 42.56 3.51
175 176 1.078201 GCCAAAGCATACGCAAAGCC 61.078 55.000 0.00 0.00 42.27 4.35
176 177 0.458370 CCAAAGCATACGCAAAGCCC 60.458 55.000 0.00 0.00 42.27 5.19
177 178 0.243365 CAAAGCATACGCAAAGCCCA 59.757 50.000 0.00 0.00 42.27 5.36
178 179 0.965439 AAAGCATACGCAAAGCCCAA 59.035 45.000 0.00 0.00 42.27 4.12
179 180 0.527565 AAGCATACGCAAAGCCCAAG 59.472 50.000 0.00 0.00 42.27 3.61
180 181 0.322456 AGCATACGCAAAGCCCAAGA 60.322 50.000 0.00 0.00 42.27 3.02
181 182 0.525761 GCATACGCAAAGCCCAAGAA 59.474 50.000 0.00 0.00 38.36 2.52
182 183 1.468054 GCATACGCAAAGCCCAAGAAG 60.468 52.381 0.00 0.00 38.36 2.85
183 184 1.133025 CATACGCAAAGCCCAAGAAGG 59.867 52.381 0.00 0.00 37.03 3.46
191 192 4.296265 CCCAAGAAGGCCACGTAC 57.704 61.111 5.01 0.00 35.39 3.67
192 193 1.740296 CCCAAGAAGGCCACGTACG 60.740 63.158 15.01 15.01 35.39 3.67
193 194 1.290955 CCAAGAAGGCCACGTACGA 59.709 57.895 24.41 0.00 0.00 3.43
194 195 0.736325 CCAAGAAGGCCACGTACGAG 60.736 60.000 24.41 14.76 0.00 4.18
195 196 1.080025 AAGAAGGCCACGTACGAGC 60.080 57.895 24.41 22.56 0.00 5.03
200 201 4.367023 GCCACGTACGAGCCACCA 62.367 66.667 24.41 0.00 0.00 4.17
201 202 2.340809 CCACGTACGAGCCACCAA 59.659 61.111 24.41 0.00 0.00 3.67
202 203 2.025418 CCACGTACGAGCCACCAAC 61.025 63.158 24.41 0.00 0.00 3.77
203 204 2.025418 CACGTACGAGCCACCAACC 61.025 63.158 24.41 0.00 0.00 3.77
204 205 2.340809 CGTACGAGCCACCAACCA 59.659 61.111 10.44 0.00 0.00 3.67
205 206 2.025418 CGTACGAGCCACCAACCAC 61.025 63.158 10.44 0.00 0.00 4.16
206 207 1.070105 GTACGAGCCACCAACCACA 59.930 57.895 0.00 0.00 0.00 4.17
207 208 1.070105 TACGAGCCACCAACCACAC 59.930 57.895 0.00 0.00 0.00 3.82
208 209 2.702751 TACGAGCCACCAACCACACG 62.703 60.000 0.00 0.00 0.00 4.49
209 210 3.660111 GAGCCACCAACCACACGC 61.660 66.667 0.00 0.00 0.00 5.34
212 213 4.885270 CCACCAACCACACGCCCA 62.885 66.667 0.00 0.00 0.00 5.36
213 214 2.597217 CACCAACCACACGCCCAT 60.597 61.111 0.00 0.00 0.00 4.00
214 215 2.282180 ACCAACCACACGCCCATC 60.282 61.111 0.00 0.00 0.00 3.51
215 216 2.282110 CCAACCACACGCCCATCA 60.282 61.111 0.00 0.00 0.00 3.07
216 217 2.625823 CCAACCACACGCCCATCAC 61.626 63.158 0.00 0.00 0.00 3.06
217 218 2.282180 AACCACACGCCCATCACC 60.282 61.111 0.00 0.00 0.00 4.02
218 219 2.829384 AACCACACGCCCATCACCT 61.829 57.895 0.00 0.00 0.00 4.00
219 220 1.485294 AACCACACGCCCATCACCTA 61.485 55.000 0.00 0.00 0.00 3.08
220 221 1.298340 CCACACGCCCATCACCTAA 59.702 57.895 0.00 0.00 0.00 2.69
221 222 0.322098 CCACACGCCCATCACCTAAA 60.322 55.000 0.00 0.00 0.00 1.85
222 223 1.529226 CACACGCCCATCACCTAAAA 58.471 50.000 0.00 0.00 0.00 1.52
223 224 1.883275 CACACGCCCATCACCTAAAAA 59.117 47.619 0.00 0.00 0.00 1.94
240 241 2.697819 AAAAACCCGACCACACTCG 58.302 52.632 0.00 0.00 0.00 4.18
241 242 0.178533 AAAAACCCGACCACACTCGA 59.821 50.000 0.00 0.00 35.58 4.04
242 243 0.249741 AAAACCCGACCACACTCGAG 60.250 55.000 11.84 11.84 35.58 4.04
243 244 1.397390 AAACCCGACCACACTCGAGT 61.397 55.000 13.58 13.58 35.58 4.18
257 258 3.996480 ACTCGAGTGAAGGAAGAAAAGG 58.004 45.455 19.30 0.00 0.00 3.11
258 259 3.244249 ACTCGAGTGAAGGAAGAAAAGGG 60.244 47.826 19.30 0.00 0.00 3.95
259 260 1.807142 CGAGTGAAGGAAGAAAAGGGC 59.193 52.381 0.00 0.00 0.00 5.19
260 261 2.551071 CGAGTGAAGGAAGAAAAGGGCT 60.551 50.000 0.00 0.00 0.00 5.19
261 262 3.078097 GAGTGAAGGAAGAAAAGGGCTC 58.922 50.000 0.00 0.00 0.00 4.70
262 263 1.807142 GTGAAGGAAGAAAAGGGCTCG 59.193 52.381 0.00 0.00 0.00 5.03
263 264 1.697432 TGAAGGAAGAAAAGGGCTCGA 59.303 47.619 0.00 0.00 0.00 4.04
264 265 2.305927 TGAAGGAAGAAAAGGGCTCGAT 59.694 45.455 0.00 0.00 0.00 3.59
265 266 3.244911 TGAAGGAAGAAAAGGGCTCGATT 60.245 43.478 0.00 0.00 0.00 3.34
266 267 3.441500 AGGAAGAAAAGGGCTCGATTT 57.558 42.857 0.00 0.00 0.00 2.17
267 268 3.084786 AGGAAGAAAAGGGCTCGATTTG 58.915 45.455 0.00 0.00 0.00 2.32
268 269 2.164422 GGAAGAAAAGGGCTCGATTTGG 59.836 50.000 0.00 0.00 0.00 3.28
269 270 1.177401 AGAAAAGGGCTCGATTTGGC 58.823 50.000 0.00 0.00 0.00 4.52
270 271 0.179163 GAAAAGGGCTCGATTTGGCG 60.179 55.000 0.00 0.00 0.00 5.69
271 272 0.608035 AAAAGGGCTCGATTTGGCGA 60.608 50.000 0.00 0.00 38.74 5.54
272 273 0.608035 AAAGGGCTCGATTTGGCGAA 60.608 50.000 0.00 0.00 40.13 4.70
273 274 0.394352 AAGGGCTCGATTTGGCGAAT 60.394 50.000 0.00 0.00 40.13 3.34
274 275 0.394352 AGGGCTCGATTTGGCGAATT 60.394 50.000 0.58 0.00 40.13 2.17
275 276 0.029433 GGGCTCGATTTGGCGAATTC 59.971 55.000 0.58 0.00 40.13 2.17
276 277 1.017387 GGCTCGATTTGGCGAATTCT 58.983 50.000 3.52 0.00 40.13 2.40
277 278 1.003438 GGCTCGATTTGGCGAATTCTC 60.003 52.381 3.52 0.00 40.13 2.87
278 279 1.665679 GCTCGATTTGGCGAATTCTCA 59.334 47.619 3.52 0.00 40.13 3.27
279 280 2.286067 GCTCGATTTGGCGAATTCTCAG 60.286 50.000 3.52 0.00 40.13 3.35
280 281 1.665679 TCGATTTGGCGAATTCTCAGC 59.334 47.619 3.52 0.00 37.35 4.26
285 286 3.188786 GCGAATTCTCAGCCGCGT 61.189 61.111 4.92 0.00 38.27 6.01
286 287 1.876714 GCGAATTCTCAGCCGCGTA 60.877 57.895 4.92 0.00 38.27 4.42
287 288 1.418342 GCGAATTCTCAGCCGCGTAA 61.418 55.000 4.92 0.00 38.27 3.18
288 289 0.996462 CGAATTCTCAGCCGCGTAAA 59.004 50.000 4.92 0.00 0.00 2.01
289 290 1.392168 CGAATTCTCAGCCGCGTAAAA 59.608 47.619 4.92 0.00 0.00 1.52
290 291 2.534939 CGAATTCTCAGCCGCGTAAAAG 60.535 50.000 4.92 0.00 0.00 2.27
291 292 2.094762 ATTCTCAGCCGCGTAAAAGT 57.905 45.000 4.92 0.00 0.00 2.66
292 293 2.728690 TTCTCAGCCGCGTAAAAGTA 57.271 45.000 4.92 0.00 0.00 2.24
293 294 2.728690 TCTCAGCCGCGTAAAAGTAA 57.271 45.000 4.92 0.00 0.00 2.24
294 295 2.331194 TCTCAGCCGCGTAAAAGTAAC 58.669 47.619 4.92 0.00 0.00 2.50
295 296 1.392510 CTCAGCCGCGTAAAAGTAACC 59.607 52.381 4.92 0.00 0.00 2.85
296 297 0.094046 CAGCCGCGTAAAAGTAACCG 59.906 55.000 4.92 0.00 0.00 4.44
297 298 0.038343 AGCCGCGTAAAAGTAACCGA 60.038 50.000 4.92 0.00 0.00 4.69
298 299 0.367887 GCCGCGTAAAAGTAACCGAG 59.632 55.000 4.92 0.00 0.00 4.63
299 300 0.367887 CCGCGTAAAAGTAACCGAGC 59.632 55.000 4.92 0.00 0.00 5.03
300 301 0.367887 CGCGTAAAAGTAACCGAGCC 59.632 55.000 0.00 0.00 0.00 4.70
301 302 0.723414 GCGTAAAAGTAACCGAGCCC 59.277 55.000 0.00 0.00 0.00 5.19
302 303 1.940752 GCGTAAAAGTAACCGAGCCCA 60.941 52.381 0.00 0.00 0.00 5.36
303 304 2.624636 CGTAAAAGTAACCGAGCCCAT 58.375 47.619 0.00 0.00 0.00 4.00
304 305 2.606272 CGTAAAAGTAACCGAGCCCATC 59.394 50.000 0.00 0.00 0.00 3.51
305 306 2.871096 AAAAGTAACCGAGCCCATCA 57.129 45.000 0.00 0.00 0.00 3.07
306 307 2.109425 AAAGTAACCGAGCCCATCAC 57.891 50.000 0.00 0.00 0.00 3.06
307 308 0.252197 AAGTAACCGAGCCCATCACC 59.748 55.000 0.00 0.00 0.00 4.02
308 309 0.907704 AGTAACCGAGCCCATCACCA 60.908 55.000 0.00 0.00 0.00 4.17
309 310 0.035820 GTAACCGAGCCCATCACCAA 60.036 55.000 0.00 0.00 0.00 3.67
310 311 0.251916 TAACCGAGCCCATCACCAAG 59.748 55.000 0.00 0.00 0.00 3.61
311 312 1.488705 AACCGAGCCCATCACCAAGA 61.489 55.000 0.00 0.00 0.00 3.02
312 313 1.153289 CCGAGCCCATCACCAAGAG 60.153 63.158 0.00 0.00 0.00 2.85
313 314 1.817099 CGAGCCCATCACCAAGAGC 60.817 63.158 0.00 0.00 0.00 4.09
314 315 1.817099 GAGCCCATCACCAAGAGCG 60.817 63.158 0.00 0.00 0.00 5.03
315 316 2.045926 GCCCATCACCAAGAGCGT 60.046 61.111 0.00 0.00 0.00 5.07
316 317 1.675641 GCCCATCACCAAGAGCGTT 60.676 57.895 0.00 0.00 0.00 4.84
317 318 1.926511 GCCCATCACCAAGAGCGTTG 61.927 60.000 0.00 0.00 0.00 4.10
318 319 1.308069 CCCATCACCAAGAGCGTTGG 61.308 60.000 16.84 16.84 44.91 3.77
319 320 1.308069 CCATCACCAAGAGCGTTGGG 61.308 60.000 20.96 12.17 43.71 4.12
320 321 1.675641 ATCACCAAGAGCGTTGGGC 60.676 57.895 20.96 0.00 43.71 5.36
330 331 3.845625 GCGTTGGGCAGCAATATAC 57.154 52.632 0.00 0.00 42.87 1.47
331 332 0.310854 GCGTTGGGCAGCAATATACC 59.689 55.000 0.00 0.00 42.87 2.73
332 333 1.967319 CGTTGGGCAGCAATATACCT 58.033 50.000 0.00 0.00 0.00 3.08
333 334 2.808933 GCGTTGGGCAGCAATATACCTA 60.809 50.000 0.00 0.00 42.87 3.08
334 335 3.067106 CGTTGGGCAGCAATATACCTAG 58.933 50.000 0.00 0.00 0.00 3.02
335 336 2.814336 GTTGGGCAGCAATATACCTAGC 59.186 50.000 0.00 0.00 0.00 3.42
336 337 1.351017 TGGGCAGCAATATACCTAGCC 59.649 52.381 0.00 0.00 39.86 3.93
337 338 1.351017 GGGCAGCAATATACCTAGCCA 59.649 52.381 0.00 0.00 42.26 4.75
338 339 2.025887 GGGCAGCAATATACCTAGCCAT 60.026 50.000 0.00 0.00 42.26 4.40
339 340 3.199946 GGGCAGCAATATACCTAGCCATA 59.800 47.826 0.00 0.00 42.26 2.74
340 341 4.192317 GGCAGCAATATACCTAGCCATAC 58.808 47.826 0.00 0.00 40.29 2.39
341 342 4.192317 GCAGCAATATACCTAGCCATACC 58.808 47.826 0.00 0.00 0.00 2.73
342 343 4.080863 GCAGCAATATACCTAGCCATACCT 60.081 45.833 0.00 0.00 0.00 3.08
343 344 5.665459 CAGCAATATACCTAGCCATACCTC 58.335 45.833 0.00 0.00 0.00 3.85
344 345 4.402793 AGCAATATACCTAGCCATACCTCG 59.597 45.833 0.00 0.00 0.00 4.63
345 346 4.441634 GCAATATACCTAGCCATACCTCGG 60.442 50.000 0.00 0.00 0.00 4.63
346 347 4.875578 ATATACCTAGCCATACCTCGGA 57.124 45.455 0.00 0.00 0.00 4.55
347 348 2.283145 TACCTAGCCATACCTCGGAC 57.717 55.000 0.00 0.00 0.00 4.79
348 349 0.469518 ACCTAGCCATACCTCGGACC 60.470 60.000 0.00 0.00 0.00 4.46
349 350 1.524863 CCTAGCCATACCTCGGACCG 61.525 65.000 7.84 7.84 0.00 4.79
350 351 1.524863 CTAGCCATACCTCGGACCGG 61.525 65.000 15.25 0.00 0.00 5.28
351 352 2.989173 TAGCCATACCTCGGACCGGG 62.989 65.000 15.25 11.29 0.00 5.73
352 353 3.925090 CCATACCTCGGACCGGGC 61.925 72.222 15.25 0.21 0.00 6.13
353 354 3.925090 CATACCTCGGACCGGGCC 61.925 72.222 19.81 19.81 0.00 5.80
354 355 4.468769 ATACCTCGGACCGGGCCA 62.469 66.667 30.17 13.18 0.00 5.36
416 417 4.868195 GCCATCGTGCCTGTTTTC 57.132 55.556 0.00 0.00 0.00 2.29
417 418 2.257353 GCCATCGTGCCTGTTTTCT 58.743 52.632 0.00 0.00 0.00 2.52
418 419 0.109597 GCCATCGTGCCTGTTTTCTG 60.110 55.000 0.00 0.00 0.00 3.02
419 420 0.523072 CCATCGTGCCTGTTTTCTGG 59.477 55.000 0.00 0.00 41.11 3.86
420 421 0.523072 CATCGTGCCTGTTTTCTGGG 59.477 55.000 0.00 0.00 39.00 4.45
421 422 1.244019 ATCGTGCCTGTTTTCTGGGC 61.244 55.000 0.00 0.00 45.45 5.36
422 423 2.919494 CGTGCCTGTTTTCTGGGCC 61.919 63.158 0.00 0.00 44.71 5.80
423 424 2.203625 TGCCTGTTTTCTGGGCCC 60.204 61.111 17.59 17.59 44.71 5.80
424 425 2.203625 GCCTGTTTTCTGGGCCCA 60.204 61.111 26.67 26.67 39.96 5.36
425 426 1.836604 GCCTGTTTTCTGGGCCCAA 60.837 57.895 28.29 14.38 39.96 4.12
426 427 1.820010 GCCTGTTTTCTGGGCCCAAG 61.820 60.000 28.29 18.95 39.96 3.61
427 428 1.667722 CTGTTTTCTGGGCCCAAGC 59.332 57.895 28.29 14.22 38.76 4.01
443 444 4.382320 GCCCGGCCTGAACGTGTA 62.382 66.667 0.00 0.00 0.00 2.90
444 445 2.344500 CCCGGCCTGAACGTGTAA 59.656 61.111 0.00 0.00 0.00 2.41
445 446 1.301874 CCCGGCCTGAACGTGTAAA 60.302 57.895 0.00 0.00 0.00 2.01
446 447 0.885596 CCCGGCCTGAACGTGTAAAA 60.886 55.000 0.00 0.00 0.00 1.52
447 448 0.945813 CCGGCCTGAACGTGTAAAAA 59.054 50.000 0.00 0.00 0.00 1.94
448 449 1.334329 CCGGCCTGAACGTGTAAAAAC 60.334 52.381 0.00 0.00 0.00 2.43
449 450 1.334329 CGGCCTGAACGTGTAAAAACC 60.334 52.381 0.00 0.00 0.00 3.27
450 451 1.001048 GGCCTGAACGTGTAAAAACCC 60.001 52.381 0.00 0.00 0.00 4.11
451 452 1.334329 GCCTGAACGTGTAAAAACCCG 60.334 52.381 0.00 0.00 0.00 5.28
452 453 1.941975 CCTGAACGTGTAAAAACCCGT 59.058 47.619 0.00 0.00 34.56 5.28
453 454 2.032636 CCTGAACGTGTAAAAACCCGTC 60.033 50.000 0.00 0.00 32.30 4.79
454 455 1.592081 TGAACGTGTAAAAACCCGTCG 59.408 47.619 0.00 0.00 32.30 5.12
455 456 0.936600 AACGTGTAAAAACCCGTCGG 59.063 50.000 3.60 3.60 32.30 4.79
486 487 3.702048 CCGGCCCGACCTTCAGAA 61.702 66.667 3.71 0.00 35.61 3.02
487 488 2.345991 CGGCCCGACCTTCAGAAA 59.654 61.111 0.00 0.00 35.61 2.52
488 489 1.302192 CGGCCCGACCTTCAGAAAA 60.302 57.895 0.00 0.00 35.61 2.29
489 490 0.887387 CGGCCCGACCTTCAGAAAAA 60.887 55.000 0.00 0.00 35.61 1.94
490 491 1.545841 GGCCCGACCTTCAGAAAAAT 58.454 50.000 0.00 0.00 34.51 1.82
491 492 1.202348 GGCCCGACCTTCAGAAAAATG 59.798 52.381 0.00 0.00 34.51 2.32
492 493 1.402852 GCCCGACCTTCAGAAAAATGC 60.403 52.381 0.00 0.00 0.00 3.56
493 494 1.885887 CCCGACCTTCAGAAAAATGCA 59.114 47.619 0.00 0.00 0.00 3.96
494 495 2.295909 CCCGACCTTCAGAAAAATGCAA 59.704 45.455 0.00 0.00 0.00 4.08
495 496 3.243704 CCCGACCTTCAGAAAAATGCAAA 60.244 43.478 0.00 0.00 0.00 3.68
496 497 4.367450 CCGACCTTCAGAAAAATGCAAAA 58.633 39.130 0.00 0.00 0.00 2.44
497 498 4.808364 CCGACCTTCAGAAAAATGCAAAAA 59.192 37.500 0.00 0.00 0.00 1.94
498 499 5.276820 CCGACCTTCAGAAAAATGCAAAAAC 60.277 40.000 0.00 0.00 0.00 2.43
499 500 5.290643 CGACCTTCAGAAAAATGCAAAAACA 59.709 36.000 0.00 0.00 0.00 2.83
500 501 6.183360 CGACCTTCAGAAAAATGCAAAAACAA 60.183 34.615 0.00 0.00 0.00 2.83
501 502 6.841119 ACCTTCAGAAAAATGCAAAAACAAC 58.159 32.000 0.00 0.00 0.00 3.32
502 503 5.958949 CCTTCAGAAAAATGCAAAAACAACG 59.041 36.000 0.00 0.00 0.00 4.10
503 504 5.462034 TCAGAAAAATGCAAAAACAACGG 57.538 34.783 0.00 0.00 0.00 4.44
504 505 4.331168 TCAGAAAAATGCAAAAACAACGGG 59.669 37.500 0.00 0.00 0.00 5.28
505 506 3.064682 AGAAAAATGCAAAAACAACGGGC 59.935 39.130 0.00 0.00 0.00 6.13
506 507 2.029838 AAATGCAAAAACAACGGGCA 57.970 40.000 0.00 0.00 39.03 5.36
507 508 1.294857 AATGCAAAAACAACGGGCAC 58.705 45.000 0.00 0.00 37.30 5.01
508 509 0.176680 ATGCAAAAACAACGGGCACA 59.823 45.000 0.00 0.00 37.30 4.57
509 510 0.459237 TGCAAAAACAACGGGCACAG 60.459 50.000 0.00 0.00 0.00 3.66
510 511 1.151172 GCAAAAACAACGGGCACAGG 61.151 55.000 0.00 0.00 0.00 4.00
511 512 1.142965 AAAAACAACGGGCACAGGC 59.857 52.632 0.00 0.00 40.13 4.85
512 513 1.326951 AAAAACAACGGGCACAGGCT 61.327 50.000 0.00 0.00 40.87 4.58
513 514 1.734388 AAAACAACGGGCACAGGCTC 61.734 55.000 0.00 0.00 40.87 4.70
526 527 4.899239 GGCTCGGCCTGACCATCG 62.899 72.222 0.00 0.00 46.69 3.84
527 528 4.899239 GCTCGGCCTGACCATCGG 62.899 72.222 0.00 0.00 39.03 4.18
528 529 4.227134 CTCGGCCTGACCATCGGG 62.227 72.222 0.00 0.00 45.82 5.14
533 534 2.989639 CCTGACCATCGGGCTCAA 59.010 61.111 0.00 0.00 35.89 3.02
534 535 1.299648 CCTGACCATCGGGCTCAAA 59.700 57.895 0.00 0.00 35.89 2.69
535 536 0.322456 CCTGACCATCGGGCTCAAAA 60.322 55.000 0.00 0.00 35.89 2.44
536 537 1.683011 CCTGACCATCGGGCTCAAAAT 60.683 52.381 0.00 0.00 35.89 1.82
537 538 1.672881 CTGACCATCGGGCTCAAAATC 59.327 52.381 0.00 0.00 37.90 2.17
538 539 1.281867 TGACCATCGGGCTCAAAATCT 59.718 47.619 0.00 0.00 37.90 2.40
539 540 2.503765 TGACCATCGGGCTCAAAATCTA 59.496 45.455 0.00 0.00 37.90 1.98
540 541 3.134458 GACCATCGGGCTCAAAATCTAG 58.866 50.000 0.00 0.00 37.90 2.43
541 542 2.158755 ACCATCGGGCTCAAAATCTAGG 60.159 50.000 0.00 0.00 37.90 3.02
542 543 1.876156 CATCGGGCTCAAAATCTAGGC 59.124 52.381 0.00 0.00 37.55 3.93
545 546 2.707902 GGCTCAAAATCTAGGCCCG 58.292 57.895 0.00 0.00 37.12 6.13
546 547 0.180406 GGCTCAAAATCTAGGCCCGA 59.820 55.000 0.00 0.00 37.12 5.14
547 548 1.587547 GCTCAAAATCTAGGCCCGAG 58.412 55.000 0.00 0.00 0.00 4.63
548 549 1.587547 CTCAAAATCTAGGCCCGAGC 58.412 55.000 0.00 0.00 38.76 5.03
567 568 4.821589 CGGCCCAGAGGAAGCGTC 62.822 72.222 0.00 0.00 33.47 5.19
568 569 4.821589 GGCCCAGAGGAAGCGTCG 62.822 72.222 0.00 0.00 33.47 5.12
569 570 4.821589 GCCCAGAGGAAGCGTCGG 62.822 72.222 0.00 0.00 33.47 4.79
570 571 4.148825 CCCAGAGGAAGCGTCGGG 62.149 72.222 0.00 0.00 34.39 5.14
571 572 4.821589 CCAGAGGAAGCGTCGGGC 62.822 72.222 0.00 0.00 44.05 6.13
572 573 4.821589 CAGAGGAAGCGTCGGGCC 62.822 72.222 0.00 0.00 45.17 5.80
598 599 4.201951 CGTTCCGGACTTCCCATG 57.798 61.111 1.83 0.00 34.14 3.66
599 600 1.449601 CGTTCCGGACTTCCCATGG 60.450 63.158 1.83 4.14 34.14 3.66
600 601 1.749258 GTTCCGGACTTCCCATGGC 60.749 63.158 1.83 0.00 34.14 4.40
601 602 2.978946 TTCCGGACTTCCCATGGCC 61.979 63.158 1.83 0.00 34.14 5.36
602 603 3.727258 CCGGACTTCCCATGGCCA 61.727 66.667 8.56 8.56 34.14 5.36
603 604 2.124570 CGGACTTCCCATGGCCAG 60.125 66.667 13.05 6.54 34.14 4.85
604 605 2.276740 GGACTTCCCATGGCCAGG 59.723 66.667 13.05 12.17 34.14 4.45
605 606 2.616458 GGACTTCCCATGGCCAGGT 61.616 63.158 17.55 0.73 34.14 4.00
606 607 1.279025 GGACTTCCCATGGCCAGGTA 61.279 60.000 17.55 3.27 34.14 3.08
607 608 0.846693 GACTTCCCATGGCCAGGTAT 59.153 55.000 17.55 0.00 0.00 2.73
608 609 2.054799 GACTTCCCATGGCCAGGTATA 58.945 52.381 17.55 0.00 0.00 1.47
609 610 2.039084 GACTTCCCATGGCCAGGTATAG 59.961 54.545 17.55 11.93 0.00 1.31
610 611 1.352352 CTTCCCATGGCCAGGTATAGG 59.648 57.143 17.55 10.41 0.00 2.57
617 618 4.787871 CCAGGTATAGGCAGCAGC 57.212 61.111 0.00 0.00 41.10 5.25
618 619 1.832219 CCAGGTATAGGCAGCAGCA 59.168 57.895 2.65 0.00 44.61 4.41
619 620 0.399454 CCAGGTATAGGCAGCAGCAT 59.601 55.000 2.65 0.00 44.61 3.79
620 621 1.625315 CCAGGTATAGGCAGCAGCATA 59.375 52.381 2.65 0.00 44.61 3.14
716 717 1.177401 ATTTCTTTTCTCCCGCTGCC 58.823 50.000 0.00 0.00 0.00 4.85
915 916 0.598065 AGCATCGCCAACTTCCAAAC 59.402 50.000 0.00 0.00 0.00 2.93
976 1012 3.449227 TTCGTGCCGCTCGATCCT 61.449 61.111 17.39 0.00 37.18 3.24
1473 1510 0.108329 CCCAGTACACCATCGACACC 60.108 60.000 0.00 0.00 0.00 4.16
1513 1550 2.838225 CCGGGAGCTACATCGGGT 60.838 66.667 5.77 0.00 38.93 5.28
1625 1662 1.464608 CCTCGTGCAGGTACATTGTTG 59.535 52.381 6.26 0.00 37.53 3.33
1776 1823 3.467226 ACGATCGGAATGGGCGGT 61.467 61.111 20.98 0.00 0.00 5.68
1812 1859 3.782443 GACGTCCCCGCCAAGGAT 61.782 66.667 3.51 0.00 45.00 3.24
1830 1877 0.902531 ATACCAGCACGTACAAGCCT 59.097 50.000 3.15 0.00 0.00 4.58
1854 1901 3.244112 GGACCAGGGATTACTAATCGTGG 60.244 52.174 18.86 18.86 43.34 4.94
1864 1913 5.539582 TTACTAATCGTGGCATTGTCAAC 57.460 39.130 0.00 0.00 0.00 3.18
1865 1914 2.747446 ACTAATCGTGGCATTGTCAACC 59.253 45.455 0.00 0.00 0.00 3.77
1868 1917 2.258286 GTGGCATTGTCAACCCGC 59.742 61.111 0.00 2.84 0.00 6.13
1882 1931 1.122019 ACCCGCCCCTGATGTATCTC 61.122 60.000 0.00 0.00 0.00 2.75
1886 1935 1.543802 CGCCCCTGATGTATCTCTCTC 59.456 57.143 0.00 0.00 0.00 3.20
1887 1936 2.817463 CGCCCCTGATGTATCTCTCTCT 60.817 54.545 0.00 0.00 0.00 3.10
1888 1937 3.560239 CGCCCCTGATGTATCTCTCTCTA 60.560 52.174 0.00 0.00 0.00 2.43
1889 1938 4.411927 GCCCCTGATGTATCTCTCTCTAA 58.588 47.826 0.00 0.00 0.00 2.10
1890 1939 4.462483 GCCCCTGATGTATCTCTCTCTAAG 59.538 50.000 0.00 0.00 0.00 2.18
1891 1940 4.462483 CCCCTGATGTATCTCTCTCTAAGC 59.538 50.000 0.00 0.00 0.00 3.09
1892 1941 4.462483 CCCTGATGTATCTCTCTCTAAGCC 59.538 50.000 0.00 0.00 0.00 4.35
1894 1943 5.716228 CCTGATGTATCTCTCTCTAAGCCAT 59.284 44.000 0.00 0.00 0.00 4.40
1895 1944 6.889177 CCTGATGTATCTCTCTCTAAGCCATA 59.111 42.308 0.00 0.00 0.00 2.74
1896 1945 7.067372 CCTGATGTATCTCTCTCTAAGCCATAG 59.933 44.444 0.00 0.00 0.00 2.23
1898 1947 7.947332 TGATGTATCTCTCTCTAAGCCATAGTT 59.053 37.037 0.00 0.00 33.08 2.24
1899 1948 7.753309 TGTATCTCTCTCTAAGCCATAGTTC 57.247 40.000 0.00 0.00 33.08 3.01
1900 1949 7.290813 TGTATCTCTCTCTAAGCCATAGTTCA 58.709 38.462 0.00 0.00 33.08 3.18
1901 1950 7.780271 TGTATCTCTCTCTAAGCCATAGTTCAA 59.220 37.037 0.00 0.00 33.08 2.69
1902 1951 7.854166 ATCTCTCTCTAAGCCATAGTTCAAT 57.146 36.000 0.00 0.00 33.08 2.57
1903 1952 7.667575 TCTCTCTCTAAGCCATAGTTCAATT 57.332 36.000 0.00 0.00 33.08 2.32
1904 1953 8.083828 TCTCTCTCTAAGCCATAGTTCAATTT 57.916 34.615 0.00 0.00 33.08 1.82
1905 1954 8.200792 TCTCTCTCTAAGCCATAGTTCAATTTC 58.799 37.037 0.00 0.00 33.08 2.17
1906 1955 8.083828 TCTCTCTAAGCCATAGTTCAATTTCT 57.916 34.615 0.00 0.00 33.08 2.52
1920 1969 7.950236 AGTTCAATTTCTATTTCTACGTGTCG 58.050 34.615 0.00 0.00 0.00 4.35
1963 2013 0.461961 ATTAGCTCACCTCGTGGAGC 59.538 55.000 11.17 9.74 37.15 4.70
1965 2015 1.315981 TAGCTCACCTCGTGGAGCTG 61.316 60.000 22.98 7.86 42.33 4.24
1966 2016 2.936912 GCTCACCTCGTGGAGCTGT 61.937 63.158 11.17 0.00 35.49 4.40
2045 2096 2.159448 TGCTTGTTTCCGTGTTTCACAG 60.159 45.455 1.00 0.00 33.40 3.66
2064 2115 7.827819 TCACAGTCTAATAAAGTTGGAATCG 57.172 36.000 0.00 0.00 0.00 3.34
2067 2118 8.592998 CACAGTCTAATAAAGTTGGAATCGTAC 58.407 37.037 0.00 0.00 0.00 3.67
2069 2120 9.021863 CAGTCTAATAAAGTTGGAATCGTACTC 57.978 37.037 0.00 0.00 0.00 2.59
2070 2121 8.968969 AGTCTAATAAAGTTGGAATCGTACTCT 58.031 33.333 0.00 0.00 0.00 3.24
2071 2122 9.235537 GTCTAATAAAGTTGGAATCGTACTCTC 57.764 37.037 0.00 0.00 0.00 3.20
2072 2123 9.186837 TCTAATAAAGTTGGAATCGTACTCTCT 57.813 33.333 0.00 0.00 0.00 3.10
2073 2124 9.804758 CTAATAAAGTTGGAATCGTACTCTCTT 57.195 33.333 0.00 0.00 0.00 2.85
2074 2125 8.705048 AATAAAGTTGGAATCGTACTCTCTTC 57.295 34.615 0.00 0.00 0.00 2.87
2075 2126 5.723672 AAGTTGGAATCGTACTCTCTTCA 57.276 39.130 0.00 0.00 0.00 3.02
2082 2133 6.183360 TGGAATCGTACTCTCTTCATCTCTTG 60.183 42.308 0.00 0.00 0.00 3.02
2083 2134 5.766150 ATCGTACTCTCTTCATCTCTTGG 57.234 43.478 0.00 0.00 0.00 3.61
2084 2135 3.378742 TCGTACTCTCTTCATCTCTTGGC 59.621 47.826 0.00 0.00 0.00 4.52
2119 2190 1.279271 GTACTGCCATCCTGGTGAACT 59.721 52.381 0.00 0.00 40.46 3.01
2128 2199 4.080919 CCATCCTGGTGAACTTAGTCATGA 60.081 45.833 0.00 0.00 31.35 3.07
2131 2202 4.593206 TCCTGGTGAACTTAGTCATGAACT 59.407 41.667 0.00 0.00 42.33 3.01
2132 2203 4.692625 CCTGGTGAACTTAGTCATGAACTG 59.307 45.833 0.00 0.00 39.11 3.16
2133 2204 5.290493 TGGTGAACTTAGTCATGAACTGT 57.710 39.130 0.00 0.00 39.11 3.55
2134 2205 6.413783 TGGTGAACTTAGTCATGAACTGTA 57.586 37.500 0.00 0.00 39.11 2.74
2136 2207 7.450074 TGGTGAACTTAGTCATGAACTGTAAT 58.550 34.615 0.00 0.00 39.11 1.89
2137 2208 7.387673 TGGTGAACTTAGTCATGAACTGTAATG 59.612 37.037 0.00 0.00 39.11 1.90
2159 2230 1.519408 GTGTGGCAATAACACGTCCT 58.481 50.000 0.00 0.00 41.64 3.85
2160 2231 1.877443 GTGTGGCAATAACACGTCCTT 59.123 47.619 0.00 0.00 41.64 3.36
2161 2232 2.292292 GTGTGGCAATAACACGTCCTTT 59.708 45.455 0.00 0.00 41.64 3.11
2164 2235 4.762765 TGTGGCAATAACACGTCCTTTAAT 59.237 37.500 0.00 0.00 41.64 1.40
2165 2236 5.241949 TGTGGCAATAACACGTCCTTTAATT 59.758 36.000 0.00 0.00 41.64 1.40
2166 2237 5.798434 GTGGCAATAACACGTCCTTTAATTC 59.202 40.000 0.00 0.00 0.00 2.17
2167 2238 5.025826 GGCAATAACACGTCCTTTAATTCG 58.974 41.667 0.00 0.00 0.00 3.34
2168 2239 5.391203 GGCAATAACACGTCCTTTAATTCGT 60.391 40.000 0.00 0.00 36.99 3.85
2169 2240 6.183360 GGCAATAACACGTCCTTTAATTCGTA 60.183 38.462 0.00 0.00 35.13 3.43
2173 2244 6.790285 AACACGTCCTTTAATTCGTAACAT 57.210 33.333 0.00 0.00 35.13 2.71
2196 2293 4.004982 ACACAACCGTAACTTGTTCTTGT 58.995 39.130 0.00 0.00 29.02 3.16
2199 2296 4.696402 ACAACCGTAACTTGTTCTTGTGAA 59.304 37.500 0.00 0.00 0.00 3.18
2201 2298 6.539464 ACAACCGTAACTTGTTCTTGTGAATA 59.461 34.615 0.00 0.00 34.40 1.75
2202 2299 7.227910 ACAACCGTAACTTGTTCTTGTGAATAT 59.772 33.333 0.00 0.00 34.40 1.28
2203 2300 7.129109 ACCGTAACTTGTTCTTGTGAATATG 57.871 36.000 0.00 0.00 34.40 1.78
2204 2301 6.021596 CCGTAACTTGTTCTTGTGAATATGC 58.978 40.000 0.00 0.00 34.40 3.14
2222 2319 3.986006 GCACACGGAGACACGGGA 61.986 66.667 0.00 0.00 40.35 5.14
2223 2320 2.258591 CACACGGAGACACGGGAG 59.741 66.667 0.00 0.00 40.35 4.30
2224 2321 2.114625 ACACGGAGACACGGGAGA 59.885 61.111 0.00 0.00 40.35 3.71
2225 2322 2.266627 ACACGGAGACACGGGAGAC 61.267 63.158 0.00 0.00 40.35 3.36
2226 2323 2.114625 ACGGAGACACGGGAGACA 59.885 61.111 0.00 0.00 38.39 3.41
2227 2324 2.266627 ACGGAGACACGGGAGACAC 61.267 63.158 0.00 0.00 38.39 3.67
2228 2325 2.265904 CGGAGACACGGGAGACACA 61.266 63.158 0.00 0.00 0.00 3.72
2229 2326 1.595993 CGGAGACACGGGAGACACAT 61.596 60.000 0.00 0.00 0.00 3.21
2242 2339 4.806247 GGGAGACACATAAAACGATCTCAG 59.194 45.833 0.00 0.00 35.36 3.35
2244 2341 6.100004 GGAGACACATAAAACGATCTCAGAA 58.900 40.000 0.00 0.00 35.36 3.02
2245 2342 6.254589 GGAGACACATAAAACGATCTCAGAAG 59.745 42.308 0.00 0.00 35.36 2.85
2262 2359 2.306512 AGAAGAGTCGGGTACAGAGACT 59.693 50.000 14.30 14.30 46.61 3.24
2263 2360 3.518705 AGAAGAGTCGGGTACAGAGACTA 59.481 47.826 14.35 0.00 44.30 2.59
2264 2361 3.996921 AGAGTCGGGTACAGAGACTAA 57.003 47.619 14.35 0.00 44.30 2.24
2273 2370 5.362263 GGGTACAGAGACTAACAACAAACA 58.638 41.667 0.00 0.00 0.00 2.83
2357 2471 2.159254 CGGCGAATTTGGATTTCATGGT 60.159 45.455 0.00 0.00 0.00 3.55
2526 2640 1.016130 CGTTGAGCTGGTAGTGCTGG 61.016 60.000 0.00 0.00 41.30 4.85
2721 2835 2.435059 GAGAGGCCCAGCGTGTTC 60.435 66.667 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.867233 CGCATAATTCCCGAGGAACAG 59.133 52.381 7.42 1.08 45.07 3.16
1 2 1.474320 CCGCATAATTCCCGAGGAACA 60.474 52.381 7.42 0.70 45.07 3.18
2 3 1.226746 CCGCATAATTCCCGAGGAAC 58.773 55.000 7.42 0.00 45.07 3.62
3 4 0.107831 CCCGCATAATTCCCGAGGAA 59.892 55.000 7.67 7.67 46.39 3.36
4 5 1.752198 CCCGCATAATTCCCGAGGA 59.248 57.895 0.00 0.00 0.00 3.71
5 6 1.966451 GCCCGCATAATTCCCGAGG 60.966 63.158 0.00 0.00 0.00 4.63
6 7 0.817634 TTGCCCGCATAATTCCCGAG 60.818 55.000 0.00 0.00 0.00 4.63
7 8 0.394488 TTTGCCCGCATAATTCCCGA 60.394 50.000 0.00 0.00 0.00 5.14
8 9 0.457851 TTTTGCCCGCATAATTCCCG 59.542 50.000 0.00 0.00 0.00 5.14
9 10 2.871633 CAATTTTGCCCGCATAATTCCC 59.128 45.455 13.10 0.00 36.14 3.97
10 11 3.530535 ACAATTTTGCCCGCATAATTCC 58.469 40.909 13.10 0.00 36.14 3.01
11 12 5.544136 AAACAATTTTGCCCGCATAATTC 57.456 34.783 13.10 0.00 36.14 2.17
12 13 5.471456 TGAAAACAATTTTGCCCGCATAATT 59.529 32.000 10.97 10.97 37.82 1.40
13 14 4.999950 TGAAAACAATTTTGCCCGCATAAT 59.000 33.333 0.22 0.22 31.94 1.28
14 15 4.380531 TGAAAACAATTTTGCCCGCATAA 58.619 34.783 0.00 0.00 31.94 1.90
15 16 3.995199 TGAAAACAATTTTGCCCGCATA 58.005 36.364 0.00 0.00 31.94 3.14
16 17 2.843701 TGAAAACAATTTTGCCCGCAT 58.156 38.095 0.00 0.00 31.94 4.73
17 18 2.315925 TGAAAACAATTTTGCCCGCA 57.684 40.000 0.00 0.00 31.94 5.69
18 19 3.498018 AGATTGAAAACAATTTTGCCCGC 59.502 39.130 0.00 0.00 31.94 6.13
19 20 6.966435 ATAGATTGAAAACAATTTTGCCCG 57.034 33.333 0.00 0.00 31.94 6.13
20 21 7.330700 TCGAATAGATTGAAAACAATTTTGCCC 59.669 33.333 0.00 0.00 31.94 5.36
21 22 8.238481 TCGAATAGATTGAAAACAATTTTGCC 57.762 30.769 0.00 0.00 31.94 4.52
35 36 9.081997 GCCTCTAAAGTGATATCGAATAGATTG 57.918 37.037 0.00 0.99 40.66 2.67
36 37 9.030452 AGCCTCTAAAGTGATATCGAATAGATT 57.970 33.333 0.00 0.00 40.66 2.40
37 38 8.588290 AGCCTCTAAAGTGATATCGAATAGAT 57.412 34.615 0.00 0.00 43.19 1.98
38 39 9.688091 ATAGCCTCTAAAGTGATATCGAATAGA 57.312 33.333 0.00 3.34 0.00 1.98
70 71 8.034804 GGTCCATAAGTCTTTGCAATGTTTTAT 58.965 33.333 11.67 12.62 0.00 1.40
71 72 7.014711 TGGTCCATAAGTCTTTGCAATGTTTTA 59.985 33.333 11.67 11.23 0.00 1.52
72 73 6.183360 TGGTCCATAAGTCTTTGCAATGTTTT 60.183 34.615 11.67 9.71 0.00 2.43
73 74 5.304101 TGGTCCATAAGTCTTTGCAATGTTT 59.696 36.000 11.67 10.00 0.00 2.83
74 75 4.832266 TGGTCCATAAGTCTTTGCAATGTT 59.168 37.500 11.67 3.38 0.00 2.71
75 76 4.406456 TGGTCCATAAGTCTTTGCAATGT 58.594 39.130 11.67 0.00 0.00 2.71
76 77 5.389859 TTGGTCCATAAGTCTTTGCAATG 57.610 39.130 0.00 2.27 0.00 2.82
77 78 6.418057 TTTTGGTCCATAAGTCTTTGCAAT 57.582 33.333 0.00 0.00 0.00 3.56
78 79 5.860941 TTTTGGTCCATAAGTCTTTGCAA 57.139 34.783 0.00 0.00 0.00 4.08
79 80 6.041409 TCAATTTTGGTCCATAAGTCTTTGCA 59.959 34.615 0.00 0.00 0.00 4.08
80 81 6.454795 TCAATTTTGGTCCATAAGTCTTTGC 58.545 36.000 0.00 0.00 0.00 3.68
81 82 7.116805 GCTTCAATTTTGGTCCATAAGTCTTTG 59.883 37.037 0.00 0.00 0.00 2.77
82 83 7.154656 GCTTCAATTTTGGTCCATAAGTCTTT 58.845 34.615 0.00 0.00 0.00 2.52
83 84 6.267471 TGCTTCAATTTTGGTCCATAAGTCTT 59.733 34.615 0.00 0.00 0.00 3.01
84 85 5.774690 TGCTTCAATTTTGGTCCATAAGTCT 59.225 36.000 0.00 0.00 0.00 3.24
85 86 6.024552 TGCTTCAATTTTGGTCCATAAGTC 57.975 37.500 0.00 0.00 0.00 3.01
86 87 6.610075 ATGCTTCAATTTTGGTCCATAAGT 57.390 33.333 0.00 0.00 0.00 2.24
87 88 9.603921 AATTATGCTTCAATTTTGGTCCATAAG 57.396 29.630 0.00 0.00 31.77 1.73
88 89 9.381033 CAATTATGCTTCAATTTTGGTCCATAA 57.619 29.630 0.00 0.00 32.24 1.90
89 90 8.538701 ACAATTATGCTTCAATTTTGGTCCATA 58.461 29.630 0.00 0.00 0.00 2.74
90 91 7.396418 ACAATTATGCTTCAATTTTGGTCCAT 58.604 30.769 0.00 0.00 0.00 3.41
91 92 6.767456 ACAATTATGCTTCAATTTTGGTCCA 58.233 32.000 0.00 0.00 0.00 4.02
92 93 7.671495 AACAATTATGCTTCAATTTTGGTCC 57.329 32.000 0.00 0.00 0.00 4.46
93 94 9.597999 GAAAACAATTATGCTTCAATTTTGGTC 57.402 29.630 0.00 0.00 0.00 4.02
94 95 9.118300 TGAAAACAATTATGCTTCAATTTTGGT 57.882 25.926 0.00 0.00 32.01 3.67
95 96 9.947669 TTGAAAACAATTATGCTTCAATTTTGG 57.052 25.926 0.00 0.00 37.04 3.28
101 102 9.630098 GAGAGATTGAAAACAATTATGCTTCAA 57.370 29.630 8.31 8.31 41.80 2.69
102 103 9.017509 AGAGAGATTGAAAACAATTATGCTTCA 57.982 29.630 0.00 0.00 32.68 3.02
103 104 9.500864 GAGAGAGATTGAAAACAATTATGCTTC 57.499 33.333 0.00 0.00 0.00 3.86
104 105 8.465201 GGAGAGAGATTGAAAACAATTATGCTT 58.535 33.333 0.00 0.00 0.00 3.91
105 106 7.613022 TGGAGAGAGATTGAAAACAATTATGCT 59.387 33.333 0.00 0.00 0.00 3.79
106 107 7.765307 TGGAGAGAGATTGAAAACAATTATGC 58.235 34.615 0.00 0.00 0.00 3.14
107 108 9.731819 CATGGAGAGAGATTGAAAACAATTATG 57.268 33.333 0.00 0.00 0.00 1.90
108 109 8.910944 CCATGGAGAGAGATTGAAAACAATTAT 58.089 33.333 5.56 0.00 0.00 1.28
109 110 7.148018 GCCATGGAGAGAGATTGAAAACAATTA 60.148 37.037 18.40 0.00 0.00 1.40
110 111 6.350780 GCCATGGAGAGAGATTGAAAACAATT 60.351 38.462 18.40 0.00 0.00 2.32
111 112 5.126707 GCCATGGAGAGAGATTGAAAACAAT 59.873 40.000 18.40 0.00 0.00 2.71
112 113 4.460382 GCCATGGAGAGAGATTGAAAACAA 59.540 41.667 18.40 0.00 0.00 2.83
113 114 4.012374 GCCATGGAGAGAGATTGAAAACA 58.988 43.478 18.40 0.00 0.00 2.83
114 115 4.096081 CAGCCATGGAGAGAGATTGAAAAC 59.904 45.833 18.40 0.00 0.00 2.43
115 116 4.267536 CAGCCATGGAGAGAGATTGAAAA 58.732 43.478 18.40 0.00 0.00 2.29
116 117 3.882444 CAGCCATGGAGAGAGATTGAAA 58.118 45.455 18.40 0.00 0.00 2.69
117 118 2.421107 GCAGCCATGGAGAGAGATTGAA 60.421 50.000 18.40 0.00 0.00 2.69
118 119 1.140452 GCAGCCATGGAGAGAGATTGA 59.860 52.381 18.40 0.00 0.00 2.57
119 120 1.141254 AGCAGCCATGGAGAGAGATTG 59.859 52.381 18.40 1.06 0.00 2.67
120 121 1.141254 CAGCAGCCATGGAGAGAGATT 59.859 52.381 18.40 0.00 0.00 2.40
121 122 0.759959 CAGCAGCCATGGAGAGAGAT 59.240 55.000 18.40 0.00 0.00 2.75
122 123 1.335882 CCAGCAGCCATGGAGAGAGA 61.336 60.000 18.40 0.00 40.51 3.10
123 124 1.146485 CCAGCAGCCATGGAGAGAG 59.854 63.158 18.40 1.05 40.51 3.20
124 125 1.614525 ACCAGCAGCCATGGAGAGA 60.615 57.895 18.40 0.00 40.51 3.10
125 126 1.153208 GACCAGCAGCCATGGAGAG 60.153 63.158 18.40 4.92 40.51 3.20
126 127 2.993008 GACCAGCAGCCATGGAGA 59.007 61.111 18.40 0.00 40.51 3.71
127 128 2.513204 CGACCAGCAGCCATGGAG 60.513 66.667 18.40 8.23 40.51 3.86
128 129 4.100084 CCGACCAGCAGCCATGGA 62.100 66.667 18.40 0.00 40.51 3.41
137 138 1.593750 CTAGAGCATGCCGACCAGC 60.594 63.158 15.66 0.00 0.00 4.85
138 139 1.068753 CCTAGAGCATGCCGACCAG 59.931 63.158 15.66 4.92 0.00 4.00
139 140 3.094062 GCCTAGAGCATGCCGACCA 62.094 63.158 15.66 0.00 42.97 4.02
140 141 2.280457 GCCTAGAGCATGCCGACC 60.280 66.667 15.66 1.19 42.97 4.79
141 142 2.280457 GGCCTAGAGCATGCCGAC 60.280 66.667 15.66 6.55 46.50 4.79
144 145 1.732417 GCTTTGGCCTAGAGCATGCC 61.732 60.000 15.66 6.03 46.50 4.40
145 146 1.033746 TGCTTTGGCCTAGAGCATGC 61.034 55.000 19.69 10.51 46.50 4.06
146 147 3.179925 TGCTTTGGCCTAGAGCATG 57.820 52.632 19.69 0.00 46.50 4.06
149 150 1.221414 CGTATGCTTTGGCCTAGAGC 58.779 55.000 15.71 15.71 42.60 4.09
150 151 1.221414 GCGTATGCTTTGGCCTAGAG 58.779 55.000 3.32 0.00 38.39 2.43
151 152 0.539518 TGCGTATGCTTTGGCCTAGA 59.460 50.000 3.32 0.00 43.34 2.43
152 153 1.378531 TTGCGTATGCTTTGGCCTAG 58.621 50.000 3.32 2.21 43.34 3.02
153 154 1.742831 CTTTGCGTATGCTTTGGCCTA 59.257 47.619 3.32 0.00 43.34 3.93
154 155 0.527565 CTTTGCGTATGCTTTGGCCT 59.472 50.000 3.32 0.00 43.34 5.19
155 156 1.078201 GCTTTGCGTATGCTTTGGCC 61.078 55.000 8.69 0.00 43.34 5.36
156 157 1.078201 GGCTTTGCGTATGCTTTGGC 61.078 55.000 8.69 6.47 43.34 4.52
157 158 0.458370 GGGCTTTGCGTATGCTTTGG 60.458 55.000 8.69 0.00 43.34 3.28
158 159 0.243365 TGGGCTTTGCGTATGCTTTG 59.757 50.000 8.69 0.00 43.34 2.77
159 160 0.965439 TTGGGCTTTGCGTATGCTTT 59.035 45.000 8.69 0.00 43.34 3.51
160 161 0.527565 CTTGGGCTTTGCGTATGCTT 59.472 50.000 8.69 0.00 43.34 3.91
161 162 0.322456 TCTTGGGCTTTGCGTATGCT 60.322 50.000 8.69 0.00 43.34 3.79
162 163 0.525761 TTCTTGGGCTTTGCGTATGC 59.474 50.000 0.00 0.00 43.20 3.14
163 164 1.133025 CCTTCTTGGGCTTTGCGTATG 59.867 52.381 0.00 0.00 0.00 2.39
164 165 1.463674 CCTTCTTGGGCTTTGCGTAT 58.536 50.000 0.00 0.00 0.00 3.06
165 166 2.941210 CCTTCTTGGGCTTTGCGTA 58.059 52.632 0.00 0.00 0.00 4.42
166 167 3.763671 CCTTCTTGGGCTTTGCGT 58.236 55.556 0.00 0.00 0.00 5.24
174 175 1.740296 CGTACGTGGCCTTCTTGGG 60.740 63.158 7.22 0.00 36.00 4.12
175 176 0.736325 CTCGTACGTGGCCTTCTTGG 60.736 60.000 16.05 0.00 39.35 3.61
176 177 1.352156 GCTCGTACGTGGCCTTCTTG 61.352 60.000 16.05 0.00 0.00 3.02
177 178 1.080025 GCTCGTACGTGGCCTTCTT 60.080 57.895 16.05 0.00 0.00 2.52
178 179 2.572284 GCTCGTACGTGGCCTTCT 59.428 61.111 16.05 0.00 0.00 2.85
179 180 2.508663 GGCTCGTACGTGGCCTTC 60.509 66.667 31.48 16.14 42.31 3.46
180 181 3.307906 TGGCTCGTACGTGGCCTT 61.308 61.111 34.81 0.00 45.45 4.35
181 182 4.065281 GTGGCTCGTACGTGGCCT 62.065 66.667 34.81 0.00 45.45 5.19
183 184 3.869473 TTGGTGGCTCGTACGTGGC 62.869 63.158 29.89 29.89 35.24 5.01
184 185 2.025418 GTTGGTGGCTCGTACGTGG 61.025 63.158 16.05 10.57 0.00 4.94
185 186 2.025418 GGTTGGTGGCTCGTACGTG 61.025 63.158 16.05 14.31 0.00 4.49
186 187 2.341176 GGTTGGTGGCTCGTACGT 59.659 61.111 16.05 0.00 0.00 3.57
187 188 2.025418 GTGGTTGGTGGCTCGTACG 61.025 63.158 9.53 9.53 0.00 3.67
188 189 1.070105 TGTGGTTGGTGGCTCGTAC 59.930 57.895 0.00 0.00 0.00 3.67
189 190 1.070105 GTGTGGTTGGTGGCTCGTA 59.930 57.895 0.00 0.00 0.00 3.43
190 191 2.203153 GTGTGGTTGGTGGCTCGT 60.203 61.111 0.00 0.00 0.00 4.18
191 192 3.345808 CGTGTGGTTGGTGGCTCG 61.346 66.667 0.00 0.00 0.00 5.03
192 193 3.660111 GCGTGTGGTTGGTGGCTC 61.660 66.667 0.00 0.00 0.00 4.70
195 196 4.885270 TGGGCGTGTGGTTGGTGG 62.885 66.667 0.00 0.00 0.00 4.61
196 197 2.597217 ATGGGCGTGTGGTTGGTG 60.597 61.111 0.00 0.00 0.00 4.17
197 198 2.282180 GATGGGCGTGTGGTTGGT 60.282 61.111 0.00 0.00 0.00 3.67
198 199 2.282110 TGATGGGCGTGTGGTTGG 60.282 61.111 0.00 0.00 0.00 3.77
199 200 2.625823 GGTGATGGGCGTGTGGTTG 61.626 63.158 0.00 0.00 0.00 3.77
200 201 1.485294 TAGGTGATGGGCGTGTGGTT 61.485 55.000 0.00 0.00 0.00 3.67
201 202 1.485294 TTAGGTGATGGGCGTGTGGT 61.485 55.000 0.00 0.00 0.00 4.16
202 203 0.322098 TTTAGGTGATGGGCGTGTGG 60.322 55.000 0.00 0.00 0.00 4.17
203 204 1.529226 TTTTAGGTGATGGGCGTGTG 58.471 50.000 0.00 0.00 0.00 3.82
204 205 2.279935 TTTTTAGGTGATGGGCGTGT 57.720 45.000 0.00 0.00 0.00 4.49
222 223 0.178533 TCGAGTGTGGTCGGGTTTTT 59.821 50.000 0.00 0.00 40.49 1.94
223 224 0.249741 CTCGAGTGTGGTCGGGTTTT 60.250 55.000 3.62 0.00 40.49 2.43
224 225 1.366366 CTCGAGTGTGGTCGGGTTT 59.634 57.895 3.62 0.00 40.49 3.27
225 226 3.048602 CTCGAGTGTGGTCGGGTT 58.951 61.111 3.62 0.00 40.49 4.11
227 228 1.802337 TTCACTCGAGTGTGGTCGGG 61.802 60.000 37.21 15.88 46.42 5.14
228 229 0.387367 CTTCACTCGAGTGTGGTCGG 60.387 60.000 37.21 20.69 45.76 4.79
229 230 0.387367 CCTTCACTCGAGTGTGGTCG 60.387 60.000 37.21 23.20 45.76 4.79
230 231 0.959553 TCCTTCACTCGAGTGTGGTC 59.040 55.000 35.33 0.00 45.76 4.02
231 232 1.341531 CTTCCTTCACTCGAGTGTGGT 59.658 52.381 35.33 12.72 45.76 4.16
232 233 1.613925 TCTTCCTTCACTCGAGTGTGG 59.386 52.381 37.21 35.11 45.76 4.17
233 234 3.371102 TTCTTCCTTCACTCGAGTGTG 57.629 47.619 37.21 29.84 45.76 3.82
234 235 4.372656 CTTTTCTTCCTTCACTCGAGTGT 58.627 43.478 37.21 8.55 45.76 3.55
235 236 3.743396 CCTTTTCTTCCTTCACTCGAGTG 59.257 47.826 34.76 34.76 46.91 3.51
236 237 3.244249 CCCTTTTCTTCCTTCACTCGAGT 60.244 47.826 13.58 13.58 0.00 4.18
237 238 3.330267 CCCTTTTCTTCCTTCACTCGAG 58.670 50.000 11.84 11.84 0.00 4.04
238 239 2.550208 GCCCTTTTCTTCCTTCACTCGA 60.550 50.000 0.00 0.00 0.00 4.04
239 240 1.807142 GCCCTTTTCTTCCTTCACTCG 59.193 52.381 0.00 0.00 0.00 4.18
240 241 3.078097 GAGCCCTTTTCTTCCTTCACTC 58.922 50.000 0.00 0.00 0.00 3.51
241 242 2.551071 CGAGCCCTTTTCTTCCTTCACT 60.551 50.000 0.00 0.00 0.00 3.41
242 243 1.807142 CGAGCCCTTTTCTTCCTTCAC 59.193 52.381 0.00 0.00 0.00 3.18
243 244 1.697432 TCGAGCCCTTTTCTTCCTTCA 59.303 47.619 0.00 0.00 0.00 3.02
244 245 2.474410 TCGAGCCCTTTTCTTCCTTC 57.526 50.000 0.00 0.00 0.00 3.46
245 246 3.441500 AATCGAGCCCTTTTCTTCCTT 57.558 42.857 0.00 0.00 0.00 3.36
246 247 3.084786 CAAATCGAGCCCTTTTCTTCCT 58.915 45.455 0.00 0.00 0.00 3.36
247 248 2.164422 CCAAATCGAGCCCTTTTCTTCC 59.836 50.000 0.00 0.00 0.00 3.46
248 249 2.416027 GCCAAATCGAGCCCTTTTCTTC 60.416 50.000 0.00 0.00 0.00 2.87
249 250 1.546029 GCCAAATCGAGCCCTTTTCTT 59.454 47.619 0.00 0.00 0.00 2.52
250 251 1.177401 GCCAAATCGAGCCCTTTTCT 58.823 50.000 0.00 0.00 0.00 2.52
251 252 0.179163 CGCCAAATCGAGCCCTTTTC 60.179 55.000 0.00 0.00 0.00 2.29
252 253 0.608035 TCGCCAAATCGAGCCCTTTT 60.608 50.000 0.00 0.00 34.09 2.27
253 254 0.608035 TTCGCCAAATCGAGCCCTTT 60.608 50.000 0.00 0.00 39.82 3.11
254 255 0.394352 ATTCGCCAAATCGAGCCCTT 60.394 50.000 0.00 0.00 39.82 3.95
255 256 0.394352 AATTCGCCAAATCGAGCCCT 60.394 50.000 0.00 0.00 39.82 5.19
256 257 0.029433 GAATTCGCCAAATCGAGCCC 59.971 55.000 0.00 0.00 39.82 5.19
257 258 1.003438 GAGAATTCGCCAAATCGAGCC 60.003 52.381 0.00 0.00 39.82 4.70
258 259 1.665679 TGAGAATTCGCCAAATCGAGC 59.334 47.619 6.73 0.00 39.82 5.03
259 260 2.286067 GCTGAGAATTCGCCAAATCGAG 60.286 50.000 6.73 0.00 39.82 4.04
260 261 1.665679 GCTGAGAATTCGCCAAATCGA 59.334 47.619 6.73 0.00 36.60 3.59
261 262 1.268234 GGCTGAGAATTCGCCAAATCG 60.268 52.381 15.55 2.13 40.44 3.34
262 263 1.268234 CGGCTGAGAATTCGCCAAATC 60.268 52.381 19.04 3.93 40.62 2.17
263 264 0.734889 CGGCTGAGAATTCGCCAAAT 59.265 50.000 19.04 0.00 40.62 2.32
264 265 1.922135 GCGGCTGAGAATTCGCCAAA 61.922 55.000 19.04 0.00 40.62 3.28
265 266 2.398554 GCGGCTGAGAATTCGCCAA 61.399 57.895 19.04 0.00 40.62 4.52
266 267 2.819595 GCGGCTGAGAATTCGCCA 60.820 61.111 19.04 11.89 40.62 5.69
267 268 3.929948 CGCGGCTGAGAATTCGCC 61.930 66.667 11.62 11.62 44.56 5.54
268 269 1.418342 TTACGCGGCTGAGAATTCGC 61.418 55.000 12.47 1.74 44.04 4.70
269 270 0.996462 TTTACGCGGCTGAGAATTCG 59.004 50.000 12.47 0.00 0.00 3.34
270 271 2.415512 ACTTTTACGCGGCTGAGAATTC 59.584 45.455 12.47 0.00 0.00 2.17
271 272 2.423577 ACTTTTACGCGGCTGAGAATT 58.576 42.857 12.47 0.00 0.00 2.17
272 273 2.094762 ACTTTTACGCGGCTGAGAAT 57.905 45.000 12.47 0.00 0.00 2.40
273 274 2.728690 TACTTTTACGCGGCTGAGAA 57.271 45.000 12.47 0.00 0.00 2.87
274 275 2.331194 GTTACTTTTACGCGGCTGAGA 58.669 47.619 12.47 0.00 0.00 3.27
275 276 1.392510 GGTTACTTTTACGCGGCTGAG 59.607 52.381 12.47 5.63 0.00 3.35
276 277 1.431496 GGTTACTTTTACGCGGCTGA 58.569 50.000 12.47 0.00 0.00 4.26
277 278 0.094046 CGGTTACTTTTACGCGGCTG 59.906 55.000 12.47 0.00 0.00 4.85
278 279 0.038343 TCGGTTACTTTTACGCGGCT 60.038 50.000 12.47 0.00 0.00 5.52
279 280 0.367887 CTCGGTTACTTTTACGCGGC 59.632 55.000 12.47 0.00 0.00 6.53
280 281 0.367887 GCTCGGTTACTTTTACGCGG 59.632 55.000 12.47 0.00 0.00 6.46
281 282 0.367887 GGCTCGGTTACTTTTACGCG 59.632 55.000 3.53 3.53 0.00 6.01
282 283 0.723414 GGGCTCGGTTACTTTTACGC 59.277 55.000 0.00 0.00 0.00 4.42
283 284 2.083167 TGGGCTCGGTTACTTTTACG 57.917 50.000 0.00 0.00 0.00 3.18
284 285 3.373130 GTGATGGGCTCGGTTACTTTTAC 59.627 47.826 0.00 0.00 0.00 2.01
285 286 3.602483 GTGATGGGCTCGGTTACTTTTA 58.398 45.455 0.00 0.00 0.00 1.52
286 287 2.433436 GTGATGGGCTCGGTTACTTTT 58.567 47.619 0.00 0.00 0.00 2.27
287 288 1.339727 GGTGATGGGCTCGGTTACTTT 60.340 52.381 0.00 0.00 0.00 2.66
288 289 0.252197 GGTGATGGGCTCGGTTACTT 59.748 55.000 0.00 0.00 0.00 2.24
289 290 0.907704 TGGTGATGGGCTCGGTTACT 60.908 55.000 0.00 0.00 0.00 2.24
290 291 0.035820 TTGGTGATGGGCTCGGTTAC 60.036 55.000 0.00 0.00 0.00 2.50
291 292 0.251916 CTTGGTGATGGGCTCGGTTA 59.748 55.000 0.00 0.00 0.00 2.85
292 293 1.002134 CTTGGTGATGGGCTCGGTT 60.002 57.895 0.00 0.00 0.00 4.44
293 294 1.903877 CTCTTGGTGATGGGCTCGGT 61.904 60.000 0.00 0.00 0.00 4.69
294 295 1.153289 CTCTTGGTGATGGGCTCGG 60.153 63.158 0.00 0.00 0.00 4.63
295 296 1.817099 GCTCTTGGTGATGGGCTCG 60.817 63.158 0.00 0.00 0.00 5.03
296 297 1.817099 CGCTCTTGGTGATGGGCTC 60.817 63.158 0.00 0.00 0.00 4.70
297 298 2.129555 AACGCTCTTGGTGATGGGCT 62.130 55.000 0.00 0.00 0.00 5.19
298 299 1.675641 AACGCTCTTGGTGATGGGC 60.676 57.895 0.00 0.00 0.00 5.36
299 300 1.308069 CCAACGCTCTTGGTGATGGG 61.308 60.000 2.50 0.00 42.36 4.00
300 301 1.308069 CCCAACGCTCTTGGTGATGG 61.308 60.000 8.72 0.00 44.63 3.51
301 302 1.926511 GCCCAACGCTCTTGGTGATG 61.927 60.000 8.72 0.00 37.88 3.07
302 303 1.675641 GCCCAACGCTCTTGGTGAT 60.676 57.895 8.72 0.00 37.88 3.06
303 304 2.281484 GCCCAACGCTCTTGGTGA 60.281 61.111 8.72 0.00 37.88 4.02
304 305 2.594303 TGCCCAACGCTCTTGGTG 60.594 61.111 8.72 2.99 37.88 4.17
305 306 2.281761 CTGCCCAACGCTCTTGGT 60.282 61.111 8.72 0.00 37.88 3.67
306 307 3.741476 GCTGCCCAACGCTCTTGG 61.741 66.667 3.52 3.52 38.78 3.61
307 308 1.870055 ATTGCTGCCCAACGCTCTTG 61.870 55.000 0.00 0.00 35.99 3.02
308 309 0.322456 TATTGCTGCCCAACGCTCTT 60.322 50.000 0.00 0.00 35.99 2.85
309 310 0.107017 ATATTGCTGCCCAACGCTCT 60.107 50.000 0.00 0.00 35.99 4.09
310 311 1.264288 GTATATTGCTGCCCAACGCTC 59.736 52.381 0.00 0.00 35.99 5.03
311 312 1.308998 GTATATTGCTGCCCAACGCT 58.691 50.000 0.00 0.00 35.99 5.07
312 313 0.310854 GGTATATTGCTGCCCAACGC 59.689 55.000 0.00 0.00 35.99 4.84
313 314 1.967319 AGGTATATTGCTGCCCAACG 58.033 50.000 0.00 0.00 35.99 4.10
314 315 2.814336 GCTAGGTATATTGCTGCCCAAC 59.186 50.000 0.00 0.00 35.99 3.77
315 316 2.224769 GGCTAGGTATATTGCTGCCCAA 60.225 50.000 0.00 0.00 37.94 4.12
316 317 1.351017 GGCTAGGTATATTGCTGCCCA 59.649 52.381 0.00 0.00 33.45 5.36
317 318 1.351017 TGGCTAGGTATATTGCTGCCC 59.649 52.381 0.00 0.00 38.23 5.36
318 319 2.859165 TGGCTAGGTATATTGCTGCC 57.141 50.000 0.00 0.00 39.33 4.85
319 320 4.080863 AGGTATGGCTAGGTATATTGCTGC 60.081 45.833 0.00 0.00 0.00 5.25
320 321 5.665459 GAGGTATGGCTAGGTATATTGCTG 58.335 45.833 0.00 0.00 0.00 4.41
321 322 4.402793 CGAGGTATGGCTAGGTATATTGCT 59.597 45.833 0.00 0.00 0.00 3.91
322 323 4.441634 CCGAGGTATGGCTAGGTATATTGC 60.442 50.000 0.00 0.00 0.00 3.56
323 324 4.954202 TCCGAGGTATGGCTAGGTATATTG 59.046 45.833 0.00 0.00 0.00 1.90
324 325 4.954826 GTCCGAGGTATGGCTAGGTATATT 59.045 45.833 0.00 0.00 0.00 1.28
325 326 4.534797 GTCCGAGGTATGGCTAGGTATAT 58.465 47.826 0.00 0.00 0.00 0.86
326 327 3.308688 GGTCCGAGGTATGGCTAGGTATA 60.309 52.174 0.00 0.00 0.00 1.47
327 328 2.557005 GGTCCGAGGTATGGCTAGGTAT 60.557 54.545 0.00 0.00 0.00 2.73
328 329 1.202976 GGTCCGAGGTATGGCTAGGTA 60.203 57.143 0.00 0.00 0.00 3.08
329 330 0.469518 GGTCCGAGGTATGGCTAGGT 60.470 60.000 0.00 0.00 0.00 3.08
330 331 1.524863 CGGTCCGAGGTATGGCTAGG 61.525 65.000 4.91 0.00 0.00 3.02
331 332 1.524863 CCGGTCCGAGGTATGGCTAG 61.525 65.000 14.39 0.00 0.00 3.42
332 333 1.529948 CCGGTCCGAGGTATGGCTA 60.530 63.158 14.39 0.00 0.00 3.93
333 334 2.838225 CCGGTCCGAGGTATGGCT 60.838 66.667 14.39 0.00 0.00 4.75
334 335 3.925090 CCCGGTCCGAGGTATGGC 61.925 72.222 14.39 0.00 0.00 4.40
335 336 3.925090 GCCCGGTCCGAGGTATGG 61.925 72.222 14.39 5.13 0.00 2.74
336 337 3.925090 GGCCCGGTCCGAGGTATG 61.925 72.222 14.39 0.00 0.00 2.39
337 338 4.468769 TGGCCCGGTCCGAGGTAT 62.469 66.667 14.39 0.00 0.00 2.73
399 400 0.109597 CAGAAAACAGGCACGATGGC 60.110 55.000 0.00 0.00 44.10 4.40
400 401 0.523072 CCAGAAAACAGGCACGATGG 59.477 55.000 0.00 0.00 0.00 3.51
401 402 0.523072 CCCAGAAAACAGGCACGATG 59.477 55.000 0.00 0.00 0.00 3.84
402 403 1.244019 GCCCAGAAAACAGGCACGAT 61.244 55.000 0.00 0.00 46.34 3.73
403 404 1.896660 GCCCAGAAAACAGGCACGA 60.897 57.895 0.00 0.00 46.34 4.35
404 405 2.644992 GCCCAGAAAACAGGCACG 59.355 61.111 0.00 0.00 46.34 5.34
407 408 1.820010 CTTGGGCCCAGAAAACAGGC 61.820 60.000 26.87 0.00 46.37 4.85
408 409 1.820010 GCTTGGGCCCAGAAAACAGG 61.820 60.000 26.87 2.12 0.00 4.00
409 410 1.667722 GCTTGGGCCCAGAAAACAG 59.332 57.895 26.87 19.53 0.00 3.16
410 411 3.869481 GCTTGGGCCCAGAAAACA 58.131 55.556 26.87 8.19 0.00 2.83
426 427 3.887335 TTACACGTTCAGGCCGGGC 62.887 63.158 22.67 22.67 30.04 6.13
427 428 0.885596 TTTTACACGTTCAGGCCGGG 60.886 55.000 2.18 0.00 34.16 5.73
428 429 0.945813 TTTTTACACGTTCAGGCCGG 59.054 50.000 0.00 0.00 0.00 6.13
429 430 1.334329 GGTTTTTACACGTTCAGGCCG 60.334 52.381 0.00 0.00 0.00 6.13
430 431 1.001048 GGGTTTTTACACGTTCAGGCC 60.001 52.381 0.00 0.00 0.00 5.19
431 432 1.334329 CGGGTTTTTACACGTTCAGGC 60.334 52.381 0.00 0.00 0.00 4.85
432 433 2.673976 CGGGTTTTTACACGTTCAGG 57.326 50.000 0.00 0.00 0.00 3.86
438 439 1.861440 CCCGACGGGTTTTTACACG 59.139 57.895 25.54 0.00 43.05 4.49
439 440 0.886043 AGCCCGACGGGTTTTTACAC 60.886 55.000 32.76 14.32 46.51 2.90
440 441 0.603439 GAGCCCGACGGGTTTTTACA 60.603 55.000 32.76 0.00 46.51 2.41
441 442 1.300971 GGAGCCCGACGGGTTTTTAC 61.301 60.000 32.76 15.53 46.51 2.01
442 443 1.003476 GGAGCCCGACGGGTTTTTA 60.003 57.895 32.76 0.00 46.51 1.52
443 444 2.281970 GGAGCCCGACGGGTTTTT 60.282 61.111 32.76 16.77 46.51 1.94
469 470 2.741486 TTTTCTGAAGGTCGGGCCGG 62.741 60.000 27.98 8.04 43.70 6.13
470 471 0.887387 TTTTTCTGAAGGTCGGGCCG 60.887 55.000 22.51 22.51 43.70 6.13
471 472 1.202348 CATTTTTCTGAAGGTCGGGCC 59.798 52.381 0.00 0.00 37.58 5.80
472 473 1.402852 GCATTTTTCTGAAGGTCGGGC 60.403 52.381 0.00 0.00 0.00 6.13
473 474 1.885887 TGCATTTTTCTGAAGGTCGGG 59.114 47.619 0.00 0.00 0.00 5.14
474 475 3.641437 TTGCATTTTTCTGAAGGTCGG 57.359 42.857 0.00 0.00 0.00 4.79
475 476 5.290643 TGTTTTTGCATTTTTCTGAAGGTCG 59.709 36.000 0.00 0.00 0.00 4.79
476 477 6.660887 TGTTTTTGCATTTTTCTGAAGGTC 57.339 33.333 0.00 0.00 0.00 3.85
477 478 6.402011 CGTTGTTTTTGCATTTTTCTGAAGGT 60.402 34.615 0.00 0.00 0.00 3.50
478 479 5.958949 CGTTGTTTTTGCATTTTTCTGAAGG 59.041 36.000 0.00 0.00 0.00 3.46
479 480 5.958949 CCGTTGTTTTTGCATTTTTCTGAAG 59.041 36.000 0.00 0.00 0.00 3.02
480 481 5.163814 CCCGTTGTTTTTGCATTTTTCTGAA 60.164 36.000 0.00 0.00 0.00 3.02
481 482 4.331168 CCCGTTGTTTTTGCATTTTTCTGA 59.669 37.500 0.00 0.00 0.00 3.27
482 483 4.586334 CCCGTTGTTTTTGCATTTTTCTG 58.414 39.130 0.00 0.00 0.00 3.02
483 484 3.064682 GCCCGTTGTTTTTGCATTTTTCT 59.935 39.130 0.00 0.00 0.00 2.52
484 485 3.181506 TGCCCGTTGTTTTTGCATTTTTC 60.182 39.130 0.00 0.00 0.00 2.29
485 486 2.749621 TGCCCGTTGTTTTTGCATTTTT 59.250 36.364 0.00 0.00 0.00 1.94
486 487 2.096657 GTGCCCGTTGTTTTTGCATTTT 59.903 40.909 0.00 0.00 34.04 1.82
487 488 1.668237 GTGCCCGTTGTTTTTGCATTT 59.332 42.857 0.00 0.00 34.04 2.32
488 489 1.294857 GTGCCCGTTGTTTTTGCATT 58.705 45.000 0.00 0.00 34.04 3.56
489 490 0.176680 TGTGCCCGTTGTTTTTGCAT 59.823 45.000 0.00 0.00 34.04 3.96
490 491 0.459237 CTGTGCCCGTTGTTTTTGCA 60.459 50.000 0.00 0.00 0.00 4.08
491 492 1.151172 CCTGTGCCCGTTGTTTTTGC 61.151 55.000 0.00 0.00 0.00 3.68
492 493 1.151172 GCCTGTGCCCGTTGTTTTTG 61.151 55.000 0.00 0.00 0.00 2.44
493 494 1.142965 GCCTGTGCCCGTTGTTTTT 59.857 52.632 0.00 0.00 0.00 1.94
494 495 1.734388 GAGCCTGTGCCCGTTGTTTT 61.734 55.000 0.00 0.00 38.69 2.43
495 496 2.123897 AGCCTGTGCCCGTTGTTT 60.124 55.556 0.00 0.00 38.69 2.83
496 497 2.594592 GAGCCTGTGCCCGTTGTT 60.595 61.111 0.00 0.00 38.69 2.83
497 498 4.988598 CGAGCCTGTGCCCGTTGT 62.989 66.667 0.00 0.00 38.69 3.32
510 511 4.899239 CCGATGGTCAGGCCGAGC 62.899 72.222 16.53 16.53 42.75 5.03
511 512 4.227134 CCCGATGGTCAGGCCGAG 62.227 72.222 0.00 0.00 41.21 4.63
515 516 3.785859 TGAGCCCGATGGTCAGGC 61.786 66.667 3.17 0.00 46.14 4.85
519 520 2.044123 AGATTTTGAGCCCGATGGTC 57.956 50.000 0.00 0.00 41.96 4.02
520 521 2.158755 CCTAGATTTTGAGCCCGATGGT 60.159 50.000 0.00 0.00 0.00 3.55
521 522 2.498167 CCTAGATTTTGAGCCCGATGG 58.502 52.381 0.00 0.00 0.00 3.51
522 523 1.876156 GCCTAGATTTTGAGCCCGATG 59.124 52.381 0.00 0.00 0.00 3.84
523 524 1.202818 GGCCTAGATTTTGAGCCCGAT 60.203 52.381 0.00 0.00 37.66 4.18
524 525 0.180406 GGCCTAGATTTTGAGCCCGA 59.820 55.000 0.00 0.00 37.66 5.14
525 526 2.707902 GGCCTAGATTTTGAGCCCG 58.292 57.895 0.00 0.00 37.66 6.13
527 528 0.180406 TCGGGCCTAGATTTTGAGCC 59.820 55.000 0.84 0.00 43.09 4.70
528 529 1.587547 CTCGGGCCTAGATTTTGAGC 58.412 55.000 0.84 0.00 0.00 4.26
529 530 1.587547 GCTCGGGCCTAGATTTTGAG 58.412 55.000 9.63 2.79 0.00 3.02
530 531 3.780624 GCTCGGGCCTAGATTTTGA 57.219 52.632 9.63 0.00 0.00 2.69
550 551 4.821589 GACGCTTCCTCTGGGCCG 62.822 72.222 0.00 0.00 0.00 6.13
551 552 4.821589 CGACGCTTCCTCTGGGCC 62.822 72.222 0.00 0.00 0.00 5.80
552 553 4.821589 CCGACGCTTCCTCTGGGC 62.822 72.222 0.00 0.00 0.00 5.36
553 554 4.148825 CCCGACGCTTCCTCTGGG 62.149 72.222 0.00 0.00 0.00 4.45
554 555 4.821589 GCCCGACGCTTCCTCTGG 62.822 72.222 0.00 0.00 0.00 3.86
555 556 4.821589 GGCCCGACGCTTCCTCTG 62.822 72.222 0.00 0.00 37.74 3.35
582 583 1.749258 GCCATGGGAAGTCCGGAAC 60.749 63.158 15.13 0.00 38.76 3.62
583 584 2.674754 GCCATGGGAAGTCCGGAA 59.325 61.111 15.13 0.00 38.76 4.30
584 585 3.407967 GGCCATGGGAAGTCCGGA 61.408 66.667 15.13 0.00 38.76 5.14
585 586 3.704231 CTGGCCATGGGAAGTCCGG 62.704 68.421 15.13 6.83 38.76 5.14
586 587 2.124570 CTGGCCATGGGAAGTCCG 60.125 66.667 15.13 0.00 38.76 4.79
587 588 1.279025 TACCTGGCCATGGGAAGTCC 61.279 60.000 17.65 6.10 0.00 3.85
588 589 0.846693 ATACCTGGCCATGGGAAGTC 59.153 55.000 17.65 0.00 0.00 3.01
589 590 2.057922 CTATACCTGGCCATGGGAAGT 58.942 52.381 17.65 6.05 0.00 3.01
590 591 1.352352 CCTATACCTGGCCATGGGAAG 59.648 57.143 17.65 13.07 0.00 3.46
591 592 1.444933 CCTATACCTGGCCATGGGAA 58.555 55.000 17.65 9.02 0.00 3.97
592 593 1.133809 GCCTATACCTGGCCATGGGA 61.134 60.000 17.65 12.89 44.32 4.37
593 594 1.380302 GCCTATACCTGGCCATGGG 59.620 63.158 20.97 16.10 44.32 4.00
600 601 0.399454 ATGCTGCTGCCTATACCTGG 59.601 55.000 13.47 0.00 38.71 4.45
601 602 3.623906 ATATGCTGCTGCCTATACCTG 57.376 47.619 13.47 0.00 38.71 4.00
602 603 5.215069 AGATATATGCTGCTGCCTATACCT 58.785 41.667 18.21 13.47 35.92 3.08
603 604 5.069648 TGAGATATATGCTGCTGCCTATACC 59.930 44.000 18.21 11.76 35.92 2.73
604 605 5.982516 GTGAGATATATGCTGCTGCCTATAC 59.017 44.000 18.21 13.46 35.92 1.47
605 606 5.221126 CGTGAGATATATGCTGCTGCCTATA 60.221 44.000 18.17 18.17 36.93 1.31
606 607 4.441217 CGTGAGATATATGCTGCTGCCTAT 60.441 45.833 13.47 14.69 38.71 2.57
607 608 3.119352 CGTGAGATATATGCTGCTGCCTA 60.119 47.826 13.47 8.07 38.71 3.93
608 609 2.353505 CGTGAGATATATGCTGCTGCCT 60.354 50.000 13.47 5.83 38.71 4.75
609 610 1.998315 CGTGAGATATATGCTGCTGCC 59.002 52.381 13.47 0.00 38.71 4.85
610 611 1.392853 GCGTGAGATATATGCTGCTGC 59.607 52.381 8.89 8.89 40.20 5.25
611 612 1.652619 CGCGTGAGATATATGCTGCTG 59.347 52.381 0.00 0.00 0.00 4.41
612 613 1.988063 CGCGTGAGATATATGCTGCT 58.012 50.000 0.00 0.00 0.00 4.24
613 614 0.368227 GCGCGTGAGATATATGCTGC 59.632 55.000 8.43 0.00 0.00 5.25
614 615 1.388093 GTGCGCGTGAGATATATGCTG 59.612 52.381 8.43 0.00 0.00 4.41
615 616 1.670087 GGTGCGCGTGAGATATATGCT 60.670 52.381 8.43 0.00 0.00 3.79
616 617 0.716108 GGTGCGCGTGAGATATATGC 59.284 55.000 8.43 0.00 0.00 3.14
617 618 2.354109 AGGTGCGCGTGAGATATATG 57.646 50.000 8.43 0.00 0.00 1.78
618 619 3.082548 AGTAGGTGCGCGTGAGATATAT 58.917 45.455 8.43 0.00 0.00 0.86
619 620 2.483106 GAGTAGGTGCGCGTGAGATATA 59.517 50.000 8.43 0.00 0.00 0.86
620 621 1.267261 GAGTAGGTGCGCGTGAGATAT 59.733 52.381 8.43 0.00 0.00 1.63
621 622 0.661552 GAGTAGGTGCGCGTGAGATA 59.338 55.000 8.43 0.00 0.00 1.98
624 625 1.801913 GTGAGTAGGTGCGCGTGAG 60.802 63.158 8.43 0.00 0.00 3.51
693 694 4.321675 GGCAGCGGGAGAAAAGAAATAAAA 60.322 41.667 0.00 0.00 0.00 1.52
694 695 3.192633 GGCAGCGGGAGAAAAGAAATAAA 59.807 43.478 0.00 0.00 0.00 1.40
695 696 2.752903 GGCAGCGGGAGAAAAGAAATAA 59.247 45.455 0.00 0.00 0.00 1.40
696 697 2.026262 AGGCAGCGGGAGAAAAGAAATA 60.026 45.455 0.00 0.00 0.00 1.40
698 699 0.110486 AGGCAGCGGGAGAAAAGAAA 59.890 50.000 0.00 0.00 0.00 2.52
716 717 3.645884 CATTTGCCTGGTTCAAACTGAG 58.354 45.455 2.21 0.00 36.40 3.35
823 824 2.042025 GAGCTGGGAGAGAGGCCT 60.042 66.667 3.86 3.86 0.00 5.19
827 828 1.515020 CGGTTGAGCTGGGAGAGAG 59.485 63.158 0.00 0.00 0.00 3.20
976 1012 4.037684 GTCTTCGCAAGCTAAGGTAGGATA 59.962 45.833 6.50 0.00 37.18 2.59
1183 1220 4.760047 CGTGTCCTTGGCCTCCCG 62.760 72.222 3.32 0.00 0.00 5.14
1493 1530 2.728817 CGATGTAGCTCCCGGTCC 59.271 66.667 0.00 0.00 0.00 4.46
1812 1859 0.037697 CAGGCTTGTACGTGCTGGTA 60.038 55.000 4.97 0.00 0.00 3.25
1830 1877 2.969950 CGATTAGTAATCCCTGGTCCCA 59.030 50.000 15.70 0.00 34.35 4.37
1854 1901 3.758931 GGGGCGGGTTGACAATGC 61.759 66.667 0.00 0.00 0.00 3.56
1864 1913 0.833834 AGAGATACATCAGGGGCGGG 60.834 60.000 0.00 0.00 0.00 6.13
1865 1914 0.605589 GAGAGATACATCAGGGGCGG 59.394 60.000 0.00 0.00 0.00 6.13
1868 1917 4.462483 GCTTAGAGAGAGATACATCAGGGG 59.538 50.000 0.00 0.00 0.00 4.79
1882 1931 9.995003 ATAGAAATTGAACTATGGCTTAGAGAG 57.005 33.333 13.76 0.00 0.00 3.20
1889 1938 9.046296 CGTAGAAATAGAAATTGAACTATGGCT 57.954 33.333 0.00 0.00 30.98 4.75
1890 1939 8.827677 ACGTAGAAATAGAAATTGAACTATGGC 58.172 33.333 0.00 0.00 30.98 4.40
1894 1943 9.069078 CGACACGTAGAAATAGAAATTGAACTA 57.931 33.333 0.00 0.00 0.00 2.24
1895 1944 7.811236 TCGACACGTAGAAATAGAAATTGAACT 59.189 33.333 0.00 0.00 0.00 3.01
1896 1945 7.946043 TCGACACGTAGAAATAGAAATTGAAC 58.054 34.615 0.00 0.00 0.00 3.18
1898 1947 8.188799 AGATCGACACGTAGAAATAGAAATTGA 58.811 33.333 0.00 0.00 0.00 2.57
1899 1948 8.262588 CAGATCGACACGTAGAAATAGAAATTG 58.737 37.037 0.00 0.00 0.00 2.32
1900 1949 7.974501 ACAGATCGACACGTAGAAATAGAAATT 59.025 33.333 0.00 0.00 0.00 1.82
1901 1950 7.481642 ACAGATCGACACGTAGAAATAGAAAT 58.518 34.615 0.00 0.00 0.00 2.17
1902 1951 6.849502 ACAGATCGACACGTAGAAATAGAAA 58.150 36.000 0.00 0.00 0.00 2.52
1903 1952 6.432607 ACAGATCGACACGTAGAAATAGAA 57.567 37.500 0.00 0.00 0.00 2.10
1904 1953 6.045698 GACAGATCGACACGTAGAAATAGA 57.954 41.667 0.00 0.00 0.00 1.98
1920 1969 2.808543 AGAAACAAAGTGGCGACAGATC 59.191 45.455 0.00 0.00 44.46 2.75
1963 2013 5.010719 TGTCTAGGTCCTGACAAGTTAACAG 59.989 44.000 16.98 2.39 39.82 3.16
1965 2015 5.464030 TGTCTAGGTCCTGACAAGTTAAC 57.536 43.478 16.98 0.00 39.82 2.01
2007 2058 0.179936 GCATGGAAGGGAGGAGTCAG 59.820 60.000 0.00 0.00 0.00 3.51
2045 2096 9.235537 GAGAGTACGATTCCAACTTTATTAGAC 57.764 37.037 0.00 0.00 0.00 2.59
2064 2115 6.458232 TTAGCCAAGAGATGAAGAGAGTAC 57.542 41.667 0.00 0.00 0.00 2.73
2067 2118 5.305128 AGGATTAGCCAAGAGATGAAGAGAG 59.695 44.000 0.00 0.00 40.02 3.20
2069 2120 5.163322 ACAGGATTAGCCAAGAGATGAAGAG 60.163 44.000 0.00 0.00 40.02 2.85
2070 2121 4.718774 ACAGGATTAGCCAAGAGATGAAGA 59.281 41.667 0.00 0.00 40.02 2.87
2071 2122 5.033589 ACAGGATTAGCCAAGAGATGAAG 57.966 43.478 0.00 0.00 40.02 3.02
2072 2123 5.045651 TGAACAGGATTAGCCAAGAGATGAA 60.046 40.000 0.00 0.00 40.02 2.57
2073 2124 4.471025 TGAACAGGATTAGCCAAGAGATGA 59.529 41.667 0.00 0.00 40.02 2.92
2074 2125 4.574013 GTGAACAGGATTAGCCAAGAGATG 59.426 45.833 0.00 0.00 40.02 2.90
2075 2126 4.225942 TGTGAACAGGATTAGCCAAGAGAT 59.774 41.667 0.00 0.00 40.02 2.75
2131 2202 3.823304 TGTTATTGCCACACTGCATTACA 59.177 39.130 0.00 0.00 41.70 2.41
2132 2203 4.165779 GTGTTATTGCCACACTGCATTAC 58.834 43.478 0.00 0.00 41.70 1.89
2133 2204 3.120025 CGTGTTATTGCCACACTGCATTA 60.120 43.478 0.00 0.00 42.13 1.90
2134 2205 2.351641 CGTGTTATTGCCACACTGCATT 60.352 45.455 0.00 0.00 42.13 3.56
2136 2207 0.590682 CGTGTTATTGCCACACTGCA 59.409 50.000 2.00 0.00 42.13 4.41
2137 2208 0.591170 ACGTGTTATTGCCACACTGC 59.409 50.000 0.00 0.00 42.13 4.40
2140 2211 1.519408 AGGACGTGTTATTGCCACAC 58.481 50.000 0.00 0.00 41.08 3.82
2141 2212 2.264005 AAGGACGTGTTATTGCCACA 57.736 45.000 0.00 0.00 33.00 4.17
2142 2213 4.752661 TTAAAGGACGTGTTATTGCCAC 57.247 40.909 0.00 0.00 0.00 5.01
2143 2214 5.391097 CGAATTAAAGGACGTGTTATTGCCA 60.391 40.000 0.00 0.00 0.00 4.92
2144 2215 5.025826 CGAATTAAAGGACGTGTTATTGCC 58.974 41.667 0.00 0.00 0.00 4.52
2145 2216 5.624292 ACGAATTAAAGGACGTGTTATTGC 58.376 37.500 0.00 0.00 37.58 3.56
2146 2217 8.222433 TGTTACGAATTAAAGGACGTGTTATTG 58.778 33.333 0.00 0.00 39.28 1.90
2147 2218 8.309163 TGTTACGAATTAAAGGACGTGTTATT 57.691 30.769 0.00 0.00 39.28 1.40
2148 2219 7.887996 TGTTACGAATTAAAGGACGTGTTAT 57.112 32.000 0.00 0.00 39.28 1.89
2149 2220 7.887996 ATGTTACGAATTAAAGGACGTGTTA 57.112 32.000 0.00 0.00 39.28 2.41
2150 2221 6.790285 ATGTTACGAATTAAAGGACGTGTT 57.210 33.333 0.00 0.00 39.28 3.32
2151 2222 6.867816 TGTATGTTACGAATTAAAGGACGTGT 59.132 34.615 0.00 0.00 39.28 4.49
2152 2223 7.148771 TGTGTATGTTACGAATTAAAGGACGTG 60.149 37.037 0.00 0.00 39.28 4.49
2153 2224 6.867816 TGTGTATGTTACGAATTAAAGGACGT 59.132 34.615 0.00 0.00 41.66 4.34
2154 2225 7.280730 TGTGTATGTTACGAATTAAAGGACG 57.719 36.000 0.00 0.00 0.00 4.79
2155 2226 7.959109 GGTTGTGTATGTTACGAATTAAAGGAC 59.041 37.037 0.00 0.00 0.00 3.85
2156 2227 7.148606 CGGTTGTGTATGTTACGAATTAAAGGA 60.149 37.037 0.00 0.00 0.00 3.36
2157 2228 6.957077 CGGTTGTGTATGTTACGAATTAAAGG 59.043 38.462 0.00 0.00 0.00 3.11
2158 2229 7.512297 ACGGTTGTGTATGTTACGAATTAAAG 58.488 34.615 0.00 0.00 0.00 1.85
2159 2230 7.418840 ACGGTTGTGTATGTTACGAATTAAA 57.581 32.000 0.00 0.00 0.00 1.52
2160 2231 8.431593 GTTACGGTTGTGTATGTTACGAATTAA 58.568 33.333 0.00 0.00 0.00 1.40
2161 2232 7.812191 AGTTACGGTTGTGTATGTTACGAATTA 59.188 33.333 0.00 0.00 0.00 1.40
2164 2235 5.527951 AGTTACGGTTGTGTATGTTACGAA 58.472 37.500 0.00 0.00 0.00 3.85
2165 2236 5.119931 AGTTACGGTTGTGTATGTTACGA 57.880 39.130 0.00 0.00 0.00 3.43
2166 2237 5.175491 ACAAGTTACGGTTGTGTATGTTACG 59.825 40.000 0.00 0.00 36.76 3.18
2167 2238 6.529463 ACAAGTTACGGTTGTGTATGTTAC 57.471 37.500 0.00 0.00 36.76 2.50
2168 2239 6.985645 AGAACAAGTTACGGTTGTGTATGTTA 59.014 34.615 0.64 0.00 38.17 2.41
2169 2240 5.818857 AGAACAAGTTACGGTTGTGTATGTT 59.181 36.000 0.64 0.00 38.17 2.71
2173 2244 5.063691 CACAAGAACAAGTTACGGTTGTGTA 59.936 40.000 15.03 0.00 38.17 2.90
2196 2293 0.174617 TCTCCGTGTGCGCATATTCA 59.825 50.000 15.91 3.18 36.67 2.57
2199 2296 0.806102 GTGTCTCCGTGTGCGCATAT 60.806 55.000 15.91 0.00 36.67 1.78
2201 2298 2.738521 GTGTCTCCGTGTGCGCAT 60.739 61.111 15.91 0.00 36.67 4.73
2219 2316 4.755411 TGAGATCGTTTTATGTGTCTCCC 58.245 43.478 0.00 0.00 33.04 4.30
2220 2317 5.651530 TCTGAGATCGTTTTATGTGTCTCC 58.348 41.667 0.00 0.00 33.04 3.71
2221 2318 7.030165 TCTTCTGAGATCGTTTTATGTGTCTC 58.970 38.462 0.00 0.00 34.25 3.36
2222 2319 6.925211 TCTTCTGAGATCGTTTTATGTGTCT 58.075 36.000 0.00 0.00 0.00 3.41
2223 2320 6.809196 ACTCTTCTGAGATCGTTTTATGTGTC 59.191 38.462 0.00 0.00 42.73 3.67
2224 2321 6.692486 ACTCTTCTGAGATCGTTTTATGTGT 58.308 36.000 0.00 0.00 42.73 3.72
2225 2322 6.021074 CGACTCTTCTGAGATCGTTTTATGTG 60.021 42.308 0.00 0.00 42.73 3.21
2226 2323 6.030849 CGACTCTTCTGAGATCGTTTTATGT 58.969 40.000 0.00 0.00 42.73 2.29
2227 2324 5.457148 CCGACTCTTCTGAGATCGTTTTATG 59.543 44.000 2.99 0.00 42.73 1.90
2228 2325 5.450688 CCCGACTCTTCTGAGATCGTTTTAT 60.451 44.000 2.99 0.00 42.73 1.40
2229 2326 4.142447 CCCGACTCTTCTGAGATCGTTTTA 60.142 45.833 2.99 0.00 42.73 1.52
2242 2339 2.713877 AGTCTCTGTACCCGACTCTTC 58.286 52.381 3.73 0.00 32.93 2.87
2244 2341 3.008813 TGTTAGTCTCTGTACCCGACTCT 59.991 47.826 10.80 1.46 38.77 3.24
2245 2342 3.341823 TGTTAGTCTCTGTACCCGACTC 58.658 50.000 10.80 1.88 38.77 3.36
2262 2359 4.024725 GCAGTATCCGTGTGTTTGTTGTTA 60.025 41.667 0.00 0.00 0.00 2.41
2263 2360 3.242936 GCAGTATCCGTGTGTTTGTTGTT 60.243 43.478 0.00 0.00 0.00 2.83
2264 2361 2.289547 GCAGTATCCGTGTGTTTGTTGT 59.710 45.455 0.00 0.00 0.00 3.32
2273 2370 1.195115 ATCCACTGCAGTATCCGTGT 58.805 50.000 21.20 0.00 0.00 4.49
2357 2471 0.107703 GGGCGAAGATGATGTCACCA 60.108 55.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.