Multiple sequence alignment - TraesCS3B01G284900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G284900 chr3B 100.000 7799 0 0 1 7799 456550765 456558563 0.000000e+00 14403.0
1 TraesCS3B01G284900 chr3B 94.578 166 9 0 3419 3584 372838441 372838606 2.790000e-64 257.0
2 TraesCS3B01G284900 chr3B 94.578 166 9 0 3419 3584 755167395 755167560 2.790000e-64 257.0
3 TraesCS3B01G284900 chr3B 90.643 171 15 1 3415 3584 68900219 68900049 7.870000e-55 226.0
4 TraesCS3B01G284900 chr3B 87.778 180 18 4 3406 3584 428703861 428704037 2.850000e-49 207.0
5 TraesCS3B01G284900 chr3B 85.638 188 24 3 3410 3597 172057496 172057312 2.220000e-45 195.0
6 TraesCS3B01G284900 chr3B 86.517 178 23 1 3407 3584 288336155 288336331 2.220000e-45 195.0
7 TraesCS3B01G284900 chr3B 85.955 178 24 1 3412 3588 115237254 115237077 1.030000e-43 189.0
8 TraesCS3B01G284900 chr3B 85.632 174 23 2 3412 3585 719878840 719878669 1.730000e-41 182.0
9 TraesCS3B01G284900 chr3B 85.475 179 19 6 3410 3584 765314407 765314582 6.220000e-41 180.0
10 TraesCS3B01G284900 chr3B 88.079 151 16 2 3410 3560 172174850 172174702 2.240000e-40 178.0
11 TraesCS3B01G284900 chr3B 76.177 361 60 15 7244 7588 691382817 691382467 4.840000e-37 167.0
12 TraesCS3B01G284900 chr3B 82.143 196 28 7 3404 3598 1230187 1229998 2.250000e-35 161.0
13 TraesCS3B01G284900 chr3B 92.222 90 7 0 3601 3690 181288810 181288899 2.280000e-25 128.0
14 TraesCS3B01G284900 chr3D 97.124 2921 61 8 522 3421 355627888 355630806 0.000000e+00 4907.0
15 TraesCS3B01G284900 chr3D 93.181 3285 152 23 3684 6927 355630823 355634076 0.000000e+00 4759.0
16 TraesCS3B01G284900 chr3D 95.686 510 20 2 1 509 355627392 355627900 0.000000e+00 819.0
17 TraesCS3B01G284900 chr3D 80.339 295 42 7 7308 7586 306518837 306519131 7.930000e-50 209.0
18 TraesCS3B01G284900 chr3D 92.222 90 7 0 3601 3690 126949045 126949134 2.280000e-25 128.0
19 TraesCS3B01G284900 chr3A 94.040 3020 123 18 3684 6666 474435828 474438827 0.000000e+00 4527.0
20 TraesCS3B01G284900 chr3A 94.865 2921 88 25 522 3414 474432793 474435679 0.000000e+00 4506.0
21 TraesCS3B01G284900 chr3A 94.706 510 22 4 1 509 474432300 474432805 0.000000e+00 787.0
22 TraesCS3B01G284900 chr3A 79.839 372 55 18 7224 7586 49502006 49501646 3.610000e-63 254.0
23 TraesCS3B01G284900 chr3A 91.111 90 8 0 3601 3690 137579559 137579648 1.060000e-23 122.0
24 TraesCS3B01G284900 chr3A 84.404 109 12 4 6681 6786 474441564 474441670 1.380000e-17 102.0
25 TraesCS3B01G284900 chr4D 78.462 1040 146 48 6790 7789 66509250 66510251 6.690000e-170 608.0
26 TraesCS3B01G284900 chr4D 79.812 639 78 29 6979 7579 419319534 419320159 1.210000e-112 418.0
27 TraesCS3B01G284900 chr4D 78.297 364 41 21 7225 7582 343408636 343408967 4.770000e-47 200.0
28 TraesCS3B01G284900 chr5D 79.859 854 152 14 6955 7792 41441455 41440606 2.410000e-169 606.0
29 TraesCS3B01G284900 chr5D 80.217 829 111 29 6790 7579 192260449 192261263 2.440000e-159 573.0
30 TraesCS3B01G284900 chr5D 78.546 839 118 34 6790 7586 265900868 265900050 5.440000e-136 496.0
31 TraesCS3B01G284900 chr5D 76.777 999 158 44 6790 7736 320418041 320419017 7.030000e-135 492.0
32 TraesCS3B01G284900 chr5D 77.102 904 131 51 6742 7586 445049828 445048942 3.320000e-123 453.0
33 TraesCS3B01G284900 chr5D 89.412 85 8 1 3601 3685 441390762 441390845 1.070000e-18 106.0
34 TraesCS3B01G284900 chr5D 88.608 79 7 2 3608 3685 478164187 478164264 2.320000e-15 95.3
35 TraesCS3B01G284900 chr2D 80.072 828 114 31 6790 7579 568132747 568133561 1.140000e-157 568.0
36 TraesCS3B01G284900 chr2D 79.426 836 117 33 6790 7586 200258412 200257593 2.480000e-149 540.0
37 TraesCS3B01G284900 chr2D 76.517 1005 156 52 6790 7742 389284290 389283314 7.080000e-130 475.0
38 TraesCS3B01G284900 chr2D 77.752 436 66 16 6728 7140 616208403 616207976 1.010000e-58 239.0
39 TraesCS3B01G284900 chr1D 79.236 838 119 33 6790 7588 366479223 366478402 4.140000e-147 532.0
40 TraesCS3B01G284900 chr1D 78.204 835 129 37 6790 7586 453606792 453607611 1.180000e-132 484.0
41 TraesCS3B01G284900 chr1D 78.188 839 123 41 6790 7586 415185413 415184593 1.520000e-131 481.0
42 TraesCS3B01G284900 chr2B 76.731 1040 162 49 6790 7789 731735364 731736363 2.510000e-139 507.0
43 TraesCS3B01G284900 chr2B 80.000 440 55 17 6728 7140 750056028 750055595 2.130000e-75 294.0
44 TraesCS3B01G284900 chr7D 78.410 843 119 40 6790 7588 365487064 365486241 2.530000e-134 490.0
45 TraesCS3B01G284900 chr7D 82.921 404 61 4 6742 7140 104590861 104591261 2.680000e-94 357.0
46 TraesCS3B01G284900 chr7D 79.182 269 52 4 7505 7772 635664382 635664117 4.810000e-42 183.0
47 TraesCS3B01G284900 chr7D 85.556 90 9 3 3600 3686 237415079 237415167 3.000000e-14 91.6
48 TraesCS3B01G284900 chr2A 76.036 1110 170 58 6742 7789 394764111 394763036 9.100000e-134 488.0
49 TraesCS3B01G284900 chr2A 75.954 1127 171 59 6726 7789 406446065 406447154 9.100000e-134 488.0
50 TraesCS3B01G284900 chr2A 75.710 317 61 15 7297 7601 681206575 681206887 2.270000e-30 145.0
51 TraesCS3B01G284900 chr2A 85.897 78 5 5 6726 6801 406445853 406445926 2.330000e-10 78.7
52 TraesCS3B01G284900 chr7B 76.414 1043 155 55 6790 7789 706167692 706168686 5.470000e-131 479.0
53 TraesCS3B01G284900 chr7B 84.615 91 9 4 3600 3686 214074868 214074957 1.390000e-12 86.1
54 TraesCS3B01G284900 chr6D 76.969 838 133 36 6790 7586 160963726 160964544 2.600000e-114 424.0
55 TraesCS3B01G284900 chr6D 94.118 170 9 1 3416 3584 153869234 153869403 2.790000e-64 257.0
56 TraesCS3B01G284900 chr6B 78.464 664 109 22 6790 7428 630875985 630876639 3.390000e-108 403.0
57 TraesCS3B01G284900 chr6B 95.758 165 7 0 3420 3584 147089604 147089440 4.640000e-67 267.0
58 TraesCS3B01G284900 chr6A 75.712 737 156 20 6790 7510 322722129 322722858 1.610000e-91 348.0
59 TraesCS3B01G284900 chr4A 96.386 166 6 0 3419 3584 665604287 665604122 2.770000e-69 274.0
60 TraesCS3B01G284900 chr4A 93.605 172 10 1 3420 3590 642589412 642589583 1.000000e-63 255.0
61 TraesCS3B01G284900 chr1A 95.152 165 8 0 3420 3584 11628172 11628336 2.160000e-65 261.0
62 TraesCS3B01G284900 chr4B 94.578 166 9 0 3419 3584 9545289 9545124 2.790000e-64 257.0
63 TraesCS3B01G284900 chr4B 94.118 170 9 1 3420 3588 429242084 429241915 2.790000e-64 257.0
64 TraesCS3B01G284900 chr5A 89.655 87 6 3 3601 3685 558163542 558163627 2.980000e-19 108.0
65 TraesCS3B01G284900 chrUn 89.189 74 6 2 6730 6801 115094500 115094573 3.000000e-14 91.6
66 TraesCS3B01G284900 chr5B 83.908 87 10 4 3601 3685 585752800 585752884 6.490000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G284900 chr3B 456550765 456558563 7798 False 14403.00 14403 100.000000 1 7799 1 chr3B.!!$F5 7798
1 TraesCS3B01G284900 chr3D 355627392 355634076 6684 False 3495.00 4907 95.330333 1 6927 3 chr3D.!!$F3 6926
2 TraesCS3B01G284900 chr3A 474432300 474441670 9370 False 2480.50 4527 92.003750 1 6786 4 chr3A.!!$F2 6785
3 TraesCS3B01G284900 chr4D 66509250 66510251 1001 False 608.00 608 78.462000 6790 7789 1 chr4D.!!$F1 999
4 TraesCS3B01G284900 chr4D 419319534 419320159 625 False 418.00 418 79.812000 6979 7579 1 chr4D.!!$F3 600
5 TraesCS3B01G284900 chr5D 41440606 41441455 849 True 606.00 606 79.859000 6955 7792 1 chr5D.!!$R1 837
6 TraesCS3B01G284900 chr5D 192260449 192261263 814 False 573.00 573 80.217000 6790 7579 1 chr5D.!!$F1 789
7 TraesCS3B01G284900 chr5D 265900050 265900868 818 True 496.00 496 78.546000 6790 7586 1 chr5D.!!$R2 796
8 TraesCS3B01G284900 chr5D 320418041 320419017 976 False 492.00 492 76.777000 6790 7736 1 chr5D.!!$F2 946
9 TraesCS3B01G284900 chr5D 445048942 445049828 886 True 453.00 453 77.102000 6742 7586 1 chr5D.!!$R3 844
10 TraesCS3B01G284900 chr2D 568132747 568133561 814 False 568.00 568 80.072000 6790 7579 1 chr2D.!!$F1 789
11 TraesCS3B01G284900 chr2D 200257593 200258412 819 True 540.00 540 79.426000 6790 7586 1 chr2D.!!$R1 796
12 TraesCS3B01G284900 chr2D 389283314 389284290 976 True 475.00 475 76.517000 6790 7742 1 chr2D.!!$R2 952
13 TraesCS3B01G284900 chr1D 366478402 366479223 821 True 532.00 532 79.236000 6790 7588 1 chr1D.!!$R1 798
14 TraesCS3B01G284900 chr1D 453606792 453607611 819 False 484.00 484 78.204000 6790 7586 1 chr1D.!!$F1 796
15 TraesCS3B01G284900 chr1D 415184593 415185413 820 True 481.00 481 78.188000 6790 7586 1 chr1D.!!$R2 796
16 TraesCS3B01G284900 chr2B 731735364 731736363 999 False 507.00 507 76.731000 6790 7789 1 chr2B.!!$F1 999
17 TraesCS3B01G284900 chr7D 365486241 365487064 823 True 490.00 490 78.410000 6790 7588 1 chr7D.!!$R1 798
18 TraesCS3B01G284900 chr2A 394763036 394764111 1075 True 488.00 488 76.036000 6742 7789 1 chr2A.!!$R1 1047
19 TraesCS3B01G284900 chr2A 406445853 406447154 1301 False 283.35 488 80.925500 6726 7789 2 chr2A.!!$F2 1063
20 TraesCS3B01G284900 chr7B 706167692 706168686 994 False 479.00 479 76.414000 6790 7789 1 chr7B.!!$F2 999
21 TraesCS3B01G284900 chr6D 160963726 160964544 818 False 424.00 424 76.969000 6790 7586 1 chr6D.!!$F2 796
22 TraesCS3B01G284900 chr6B 630875985 630876639 654 False 403.00 403 78.464000 6790 7428 1 chr6B.!!$F1 638
23 TraesCS3B01G284900 chr6A 322722129 322722858 729 False 348.00 348 75.712000 6790 7510 1 chr6A.!!$F1 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 836 0.033228 TGCGTTTCCCCAGCATTTTG 59.967 50.000 0.00 0.00 35.81 2.44 F
932 936 1.275666 TATATGGGTGCCATCCCTCG 58.724 55.000 9.56 0.00 40.74 4.63 F
2275 2292 1.797046 CGTCATAGTGGCATCATGCTC 59.203 52.381 10.11 3.42 44.28 4.26 F
3435 3594 0.038744 AAGTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55 F
3436 3595 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30 F
4580 4742 0.328258 ACCACCCACTATCAACTGGC 59.672 55.000 0.00 0.00 0.00 4.85 F
5539 5707 0.182775 ACTCCAGGAAAAAGCGTGGT 59.817 50.000 0.00 0.00 42.77 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2520 2537 1.229975 CGGTCACTGAGCACATGCAA 61.230 55.0 6.64 0.0 45.16 4.08 R
2928 2960 1.171308 TAGTCTAGCCGCGTGAAGTT 58.829 50.0 4.92 0.0 0.00 2.66 R
4027 4188 0.543749 AGGGGCAGAGACACAATAGC 59.456 55.0 0.00 0.0 0.00 2.97 R
4887 5049 0.034089 AGGAGCAGGTAAATGGGCAC 60.034 55.0 0.00 0.0 0.00 5.01 R
5071 5233 0.535102 CCCTCACAGGTCACAACACC 60.535 60.0 0.00 0.0 36.58 4.16 R
6382 6606 0.905357 ACAGGCTACCTTCGCTTCAT 59.095 50.0 0.00 0.0 0.00 2.57 R
7238 10477 0.314302 CTTCTTCCACGACGTGTCCT 59.686 55.0 25.18 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
496 498 8.894409 ATGATGACATATTTTACACACGTTTG 57.106 30.769 0.00 0.00 34.71 2.93
497 499 7.301789 TGATGACATATTTTACACACGTTTGG 58.698 34.615 6.66 0.00 0.00 3.28
498 500 6.003234 TGACATATTTTACACACGTTTGGG 57.997 37.500 6.66 0.00 0.00 4.12
499 501 4.800784 ACATATTTTACACACGTTTGGGC 58.199 39.130 6.66 0.00 0.00 5.36
500 502 4.521256 ACATATTTTACACACGTTTGGGCT 59.479 37.500 6.66 0.00 0.00 5.19
501 503 3.636282 ATTTTACACACGTTTGGGCTC 57.364 42.857 6.66 0.00 0.00 4.70
502 504 2.335316 TTTACACACGTTTGGGCTCT 57.665 45.000 6.66 0.00 0.00 4.09
503 505 2.335316 TTACACACGTTTGGGCTCTT 57.665 45.000 6.66 0.00 0.00 2.85
504 506 1.588674 TACACACGTTTGGGCTCTTG 58.411 50.000 6.66 0.00 0.00 3.02
505 507 0.393808 ACACACGTTTGGGCTCTTGT 60.394 50.000 6.66 0.00 0.00 3.16
506 508 0.738389 CACACGTTTGGGCTCTTGTT 59.262 50.000 0.00 0.00 0.00 2.83
507 509 1.134175 CACACGTTTGGGCTCTTGTTT 59.866 47.619 0.00 0.00 0.00 2.83
508 510 1.822371 ACACGTTTGGGCTCTTGTTTT 59.178 42.857 0.00 0.00 0.00 2.43
509 511 2.232696 ACACGTTTGGGCTCTTGTTTTT 59.767 40.909 0.00 0.00 0.00 1.94
599 601 7.502226 TCACCAAAGAGTTACAATGATCAAGTT 59.498 33.333 0.00 0.00 0.00 2.66
631 633 0.958382 CCGAGTTTGGGGCGAATTCA 60.958 55.000 6.22 0.00 0.00 2.57
640 643 2.757868 TGGGGCGAATTCAAATAGTTGG 59.242 45.455 6.22 0.00 35.29 3.77
832 836 0.033228 TGCGTTTCCCCAGCATTTTG 59.967 50.000 0.00 0.00 35.81 2.44
844 848 1.573932 CATTTTGACGCACGGAGCA 59.426 52.632 3.06 0.00 46.13 4.26
932 936 1.275666 TATATGGGTGCCATCCCTCG 58.724 55.000 9.56 0.00 40.74 4.63
2058 2073 7.525526 GCTGCCTTCTTTTCCTTTTAGGTAAAT 60.526 37.037 0.00 0.00 34.74 1.40
2125 2140 2.289820 CAGGTATGCAAGCAGCTGTATG 59.710 50.000 16.64 15.26 45.94 2.39
2275 2292 1.797046 CGTCATAGTGGCATCATGCTC 59.203 52.381 10.11 3.42 44.28 4.26
2290 2307 4.158786 TCATGCTCAAAAATCCCCTTTCA 58.841 39.130 0.00 0.00 0.00 2.69
2821 2847 6.917217 AGAACAAAACAGAAGAGAACAGAG 57.083 37.500 0.00 0.00 0.00 3.35
2855 2881 8.338259 AGCTCACAAGAAATTATTATAACTGCG 58.662 33.333 0.00 0.00 0.00 5.18
2928 2960 3.213206 AGTGCCAATGAACAAGTCTCA 57.787 42.857 0.00 0.00 0.00 3.27
2959 2991 4.142204 GCGGCTAGACTATTTAGGGGATAC 60.142 50.000 0.00 0.00 0.00 2.24
2974 3006 8.899427 TTAGGGGATACGAGTAATATCTATCG 57.101 38.462 0.00 0.00 40.86 2.92
3095 3129 6.156256 TGCTTTCATAGTAATACCTCCACACT 59.844 38.462 0.00 0.00 0.00 3.55
3114 3148 3.688185 CACTGTCATATGCAGGGATATGC 59.312 47.826 22.64 10.43 46.68 3.14
3128 3162 3.181458 GGGATATGCACGAAGGGTCTTAA 60.181 47.826 0.00 0.00 0.00 1.85
3181 3215 2.507058 TGGATCATGCCTAGAGTTTGCT 59.493 45.455 0.00 0.00 0.00 3.91
3287 3321 9.241317 CATGGAATTAAGCATATGAGTGAAAAC 57.759 33.333 6.97 0.00 0.00 2.43
3344 3378 9.764363 TCGATTTGAAGCATAAACTGTAGATAT 57.236 29.630 0.00 0.00 0.00 1.63
3388 3422 4.335594 AGTTGTCTAGCAAAAGTGACCAAC 59.664 41.667 1.86 0.00 39.03 3.77
3389 3423 3.211045 TGTCTAGCAAAAGTGACCAACC 58.789 45.455 0.00 0.00 0.00 3.77
3394 3428 3.219281 AGCAAAAGTGACCAACCGTTAT 58.781 40.909 0.00 0.00 0.00 1.89
3421 3580 9.438228 AGGAAAACATAAAGAGCTAGAAAGTAC 57.562 33.333 0.00 0.00 0.00 2.73
3422 3581 9.438228 GGAAAACATAAAGAGCTAGAAAGTACT 57.562 33.333 0.00 0.00 0.00 2.73
3424 3583 9.438228 AAAACATAAAGAGCTAGAAAGTACTCC 57.562 33.333 0.00 0.00 0.00 3.85
3425 3584 7.114866 ACATAAAGAGCTAGAAAGTACTCCC 57.885 40.000 0.00 0.00 0.00 4.30
3426 3585 6.898521 ACATAAAGAGCTAGAAAGTACTCCCT 59.101 38.462 0.00 0.00 0.00 4.20
3427 3586 5.925506 AAAGAGCTAGAAAGTACTCCCTC 57.074 43.478 0.00 0.00 0.00 4.30
3428 3587 3.905968 AGAGCTAGAAAGTACTCCCTCC 58.094 50.000 0.00 0.00 0.00 4.30
3429 3588 2.619646 GAGCTAGAAAGTACTCCCTCCG 59.380 54.545 0.00 0.00 0.00 4.63
3430 3589 2.025131 AGCTAGAAAGTACTCCCTCCGT 60.025 50.000 0.00 0.00 0.00 4.69
3431 3590 2.759535 GCTAGAAAGTACTCCCTCCGTT 59.240 50.000 0.00 0.00 0.00 4.44
3432 3591 3.181488 GCTAGAAAGTACTCCCTCCGTTC 60.181 52.174 0.00 0.00 0.00 3.95
3433 3592 2.177734 AGAAAGTACTCCCTCCGTTCC 58.822 52.381 0.00 0.00 0.00 3.62
3434 3593 0.893447 AAAGTACTCCCTCCGTTCCG 59.107 55.000 0.00 0.00 0.00 4.30
3435 3594 0.038744 AAGTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
3436 3595 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
3437 3596 0.890683 GTACTCCCTCCGTTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
3438 3597 1.479730 GTACTCCCTCCGTTCCGAAAT 59.520 52.381 0.00 0.00 0.00 2.17
3439 3598 1.856629 ACTCCCTCCGTTCCGAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3440 3599 2.395619 ACTCCCTCCGTTCCGAAATAT 58.604 47.619 0.00 0.00 0.00 1.28
3441 3600 2.770232 ACTCCCTCCGTTCCGAAATATT 59.230 45.455 0.00 0.00 0.00 1.28
3442 3601 3.962718 ACTCCCTCCGTTCCGAAATATTA 59.037 43.478 0.00 0.00 0.00 0.98
3443 3602 4.038883 ACTCCCTCCGTTCCGAAATATTAG 59.961 45.833 0.00 0.00 0.00 1.73
3444 3603 3.962718 TCCCTCCGTTCCGAAATATTAGT 59.037 43.478 0.00 0.00 0.00 2.24
3445 3604 4.038402 TCCCTCCGTTCCGAAATATTAGTC 59.962 45.833 0.00 0.00 0.00 2.59
3446 3605 4.038883 CCCTCCGTTCCGAAATATTAGTCT 59.961 45.833 0.00 0.00 0.00 3.24
3447 3606 5.452917 CCCTCCGTTCCGAAATATTAGTCTT 60.453 44.000 0.00 0.00 0.00 3.01
3448 3607 6.047231 CCTCCGTTCCGAAATATTAGTCTTT 58.953 40.000 0.00 0.00 0.00 2.52
3449 3608 6.537660 CCTCCGTTCCGAAATATTAGTCTTTT 59.462 38.462 0.00 0.00 0.00 2.27
3450 3609 7.065443 CCTCCGTTCCGAAATATTAGTCTTTTT 59.935 37.037 0.00 0.00 0.00 1.94
3451 3610 9.090692 CTCCGTTCCGAAATATTAGTCTTTTTA 57.909 33.333 0.00 0.00 0.00 1.52
3452 3611 9.090692 TCCGTTCCGAAATATTAGTCTTTTTAG 57.909 33.333 0.00 0.00 0.00 1.85
3453 3612 9.090692 CCGTTCCGAAATATTAGTCTTTTTAGA 57.909 33.333 0.00 0.00 0.00 2.10
3467 3626 8.171164 AGTCTTTTTAGAGATTTCAACAAGGG 57.829 34.615 0.00 0.00 0.00 3.95
3468 3627 7.998964 AGTCTTTTTAGAGATTTCAACAAGGGA 59.001 33.333 0.00 0.00 0.00 4.20
3469 3628 8.076781 GTCTTTTTAGAGATTTCAACAAGGGAC 58.923 37.037 0.00 0.00 0.00 4.46
3471 3630 9.284968 CTTTTTAGAGATTTCAACAAGGGACTA 57.715 33.333 0.00 0.00 38.49 2.59
3472 3631 8.617290 TTTTAGAGATTTCAACAAGGGACTAC 57.383 34.615 0.00 0.00 38.49 2.73
3473 3632 5.825593 AGAGATTTCAACAAGGGACTACA 57.174 39.130 0.00 0.00 38.49 2.74
3474 3633 6.380079 AGAGATTTCAACAAGGGACTACAT 57.620 37.500 0.00 0.00 38.49 2.29
3475 3634 7.496346 AGAGATTTCAACAAGGGACTACATA 57.504 36.000 0.00 0.00 38.49 2.29
3476 3635 8.095452 AGAGATTTCAACAAGGGACTACATAT 57.905 34.615 0.00 0.00 38.49 1.78
3477 3636 7.989741 AGAGATTTCAACAAGGGACTACATATG 59.010 37.037 0.00 0.00 38.49 1.78
3478 3637 7.056635 AGATTTCAACAAGGGACTACATATGG 58.943 38.462 7.80 0.00 38.49 2.74
3479 3638 4.771114 TCAACAAGGGACTACATATGGG 57.229 45.455 7.80 2.11 38.49 4.00
3480 3639 3.458118 TCAACAAGGGACTACATATGGGG 59.542 47.826 7.80 1.74 38.49 4.96
3481 3640 1.774856 ACAAGGGACTACATATGGGGC 59.225 52.381 7.80 1.38 38.49 5.80
3482 3641 1.774254 CAAGGGACTACATATGGGGCA 59.226 52.381 7.80 0.00 38.49 5.36
3483 3642 2.174639 CAAGGGACTACATATGGGGCAA 59.825 50.000 7.80 0.00 38.49 4.52
3484 3643 2.498441 AGGGACTACATATGGGGCAAA 58.502 47.619 7.80 0.00 36.02 3.68
3485 3644 2.856231 AGGGACTACATATGGGGCAAAA 59.144 45.455 7.80 0.00 36.02 2.44
3486 3645 3.467103 AGGGACTACATATGGGGCAAAAT 59.533 43.478 7.80 0.00 36.02 1.82
3487 3646 3.573967 GGGACTACATATGGGGCAAAATG 59.426 47.826 7.80 0.00 0.00 2.32
3488 3647 4.469657 GGACTACATATGGGGCAAAATGA 58.530 43.478 7.80 0.00 0.00 2.57
3489 3648 4.520492 GGACTACATATGGGGCAAAATGAG 59.480 45.833 7.80 0.00 0.00 2.90
3490 3649 5.129368 ACTACATATGGGGCAAAATGAGT 57.871 39.130 7.80 0.00 0.00 3.41
3491 3650 4.889409 ACTACATATGGGGCAAAATGAGTG 59.111 41.667 7.80 0.00 0.00 3.51
3492 3651 3.979911 ACATATGGGGCAAAATGAGTGA 58.020 40.909 7.80 0.00 0.00 3.41
3493 3652 4.352009 ACATATGGGGCAAAATGAGTGAA 58.648 39.130 7.80 0.00 0.00 3.18
3494 3653 4.964262 ACATATGGGGCAAAATGAGTGAAT 59.036 37.500 7.80 0.00 0.00 2.57
3495 3654 5.069516 ACATATGGGGCAAAATGAGTGAATC 59.930 40.000 7.80 0.00 0.00 2.52
3496 3655 3.173953 TGGGGCAAAATGAGTGAATCT 57.826 42.857 0.00 0.00 0.00 2.40
3497 3656 4.314522 TGGGGCAAAATGAGTGAATCTA 57.685 40.909 0.00 0.00 0.00 1.98
3498 3657 4.016444 TGGGGCAAAATGAGTGAATCTAC 58.984 43.478 0.00 0.00 0.00 2.59
3499 3658 4.016444 GGGGCAAAATGAGTGAATCTACA 58.984 43.478 0.00 0.00 0.00 2.74
3500 3659 4.142381 GGGGCAAAATGAGTGAATCTACAC 60.142 45.833 0.00 0.00 40.60 2.90
3536 3695 9.511272 TGTCTATATACATCCGTATGTTGTAGT 57.489 33.333 0.00 0.00 44.07 2.73
3542 3701 8.958119 ATACATCCGTATGTTGTAGTTCAATT 57.042 30.769 0.00 0.00 44.07 2.32
3543 3702 7.072177 ACATCCGTATGTTGTAGTTCAATTG 57.928 36.000 0.00 0.00 44.07 2.32
3544 3703 6.876789 ACATCCGTATGTTGTAGTTCAATTGA 59.123 34.615 3.38 3.38 44.07 2.57
3545 3704 7.389330 ACATCCGTATGTTGTAGTTCAATTGAA 59.611 33.333 16.91 16.91 44.07 2.69
3546 3705 7.731882 TCCGTATGTTGTAGTTCAATTGAAA 57.268 32.000 22.07 5.45 38.38 2.69
3547 3706 7.577979 TCCGTATGTTGTAGTTCAATTGAAAC 58.422 34.615 22.07 17.37 38.38 2.78
3548 3707 6.799925 CCGTATGTTGTAGTTCAATTGAAACC 59.200 38.462 22.07 11.16 38.38 3.27
3549 3708 7.308348 CCGTATGTTGTAGTTCAATTGAAACCT 60.308 37.037 22.07 17.39 38.38 3.50
3550 3709 7.744715 CGTATGTTGTAGTTCAATTGAAACCTC 59.255 37.037 22.07 10.10 38.38 3.85
3551 3710 7.823745 ATGTTGTAGTTCAATTGAAACCTCT 57.176 32.000 22.07 16.40 38.38 3.69
3552 3711 8.918202 ATGTTGTAGTTCAATTGAAACCTCTA 57.082 30.769 22.07 15.46 38.38 2.43
3553 3712 8.740123 TGTTGTAGTTCAATTGAAACCTCTAA 57.260 30.769 22.07 11.41 38.38 2.10
3554 3713 9.179909 TGTTGTAGTTCAATTGAAACCTCTAAA 57.820 29.630 22.07 11.47 38.38 1.85
3560 3719 9.190317 AGTTCAATTGAAACCTCTAAAAAGACT 57.810 29.630 22.07 8.00 35.58 3.24
3561 3720 9.803315 GTTCAATTGAAACCTCTAAAAAGACTT 57.197 29.630 22.07 0.00 35.58 3.01
3578 3737 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3579 3738 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3580 3739 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3581 3740 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3582 3741 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3583 3742 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3588 3747 3.684408 AGGAACGGAGGGAGTATTAGT 57.316 47.619 0.00 0.00 0.00 2.24
3592 3751 4.892345 GGAACGGAGGGAGTATTAGTTAGT 59.108 45.833 0.00 0.00 0.00 2.24
3602 3761 9.571816 AGGGAGTATTAGTTAGTACTCACATAC 57.428 37.037 19.76 9.07 45.77 2.39
3603 3762 9.571816 GGGAGTATTAGTTAGTACTCACATACT 57.428 37.037 15.11 15.11 43.98 2.12
3667 3826 8.715191 TTTGAACTGCAAAAATGTCTTACATT 57.285 26.923 0.00 0.00 43.18 2.71
3668 3827 9.809096 TTTGAACTGCAAAAATGTCTTACATTA 57.191 25.926 5.75 0.00 42.59 1.90
3681 3840 7.786046 TGTCTTACATTAGTTTACAGAGGGA 57.214 36.000 0.00 0.00 0.00 4.20
3682 3841 7.837863 TGTCTTACATTAGTTTACAGAGGGAG 58.162 38.462 0.00 0.00 0.00 4.30
3683 3842 7.453752 TGTCTTACATTAGTTTACAGAGGGAGT 59.546 37.037 0.00 0.00 0.00 3.85
3684 3843 8.964772 GTCTTACATTAGTTTACAGAGGGAGTA 58.035 37.037 0.00 0.00 0.00 2.59
3793 3952 4.270008 CTTTATGAACTTCGGGGGAACAT 58.730 43.478 0.00 0.00 0.00 2.71
3807 3966 5.278957 CGGGGGAACATCATTATCAATTTCC 60.279 44.000 0.00 0.00 0.00 3.13
3901 4061 4.082245 CCGGGAAGAACAAATAGCAAACAT 60.082 41.667 0.00 0.00 0.00 2.71
3952 4112 4.585955 TTAGAAGGATGATGGCGAGTAC 57.414 45.455 0.00 0.00 0.00 2.73
3953 4113 2.388735 AGAAGGATGATGGCGAGTACA 58.611 47.619 0.00 0.00 0.00 2.90
3962 4122 0.470766 TGGCGAGTACAAAAGTGGGT 59.529 50.000 0.00 0.00 0.00 4.51
3980 4140 3.181434 TGGGTTTAGGCATGTTGTTCTCT 60.181 43.478 0.00 0.00 0.00 3.10
3991 4151 1.731160 GTTGTTCTCTGCTAGCTGCTG 59.269 52.381 17.23 11.46 43.37 4.41
4027 4188 1.339055 TGGAGGATTGTTGGCGAGAAG 60.339 52.381 0.00 0.00 0.00 2.85
4040 4201 3.157932 GCGAGAAGCTATTGTGTCTCT 57.842 47.619 8.75 0.00 44.04 3.10
4053 4214 4.216411 TGTGTCTCTGCCCCTTTTATAC 57.784 45.455 0.00 0.00 0.00 1.47
4057 4219 2.777692 TCTCTGCCCCTTTTATACTGGG 59.222 50.000 0.00 0.00 41.23 4.45
4134 4296 3.888930 ACCAGTAATGGTTGTTCAACAGG 59.111 43.478 9.55 8.66 39.57 4.00
4137 4299 5.943416 CCAGTAATGGTTGTTCAACAGGATA 59.057 40.000 15.89 2.98 0.00 2.59
4204 4366 6.481643 TGGCTCAAGCTACTTTAAAACCTAT 58.518 36.000 1.46 0.00 41.70 2.57
4211 4373 5.123979 AGCTACTTTAAAACCTATGCTGTGC 59.876 40.000 0.00 0.00 0.00 4.57
4226 4388 4.597079 TGCTGTGCGTTCTTCTTTTAAAG 58.403 39.130 0.00 0.00 0.00 1.85
4227 4389 3.422217 GCTGTGCGTTCTTCTTTTAAAGC 59.578 43.478 0.00 0.00 0.00 3.51
4230 4392 5.587289 TGTGCGTTCTTCTTTTAAAGCATT 58.413 33.333 0.00 0.00 41.05 3.56
4244 4406 7.829378 TTTAAAGCATTTTTGTGTTAACCGT 57.171 28.000 2.48 0.00 40.09 4.83
4245 4407 5.710613 AAAGCATTTTTGTGTTAACCGTG 57.289 34.783 2.48 0.00 31.62 4.94
4254 4416 2.237643 TGTGTTAACCGTGCCATATCCT 59.762 45.455 2.48 0.00 0.00 3.24
4256 4418 3.064820 GTGTTAACCGTGCCATATCCTTG 59.935 47.826 2.48 0.00 0.00 3.61
4257 4419 3.275999 GTTAACCGTGCCATATCCTTGT 58.724 45.455 0.00 0.00 0.00 3.16
4258 4420 2.038387 AACCGTGCCATATCCTTGTC 57.962 50.000 0.00 0.00 0.00 3.18
4259 4421 0.908910 ACCGTGCCATATCCTTGTCA 59.091 50.000 0.00 0.00 0.00 3.58
4260 4422 1.490490 ACCGTGCCATATCCTTGTCAT 59.510 47.619 0.00 0.00 0.00 3.06
4261 4423 2.703536 ACCGTGCCATATCCTTGTCATA 59.296 45.455 0.00 0.00 0.00 2.15
4262 4424 3.327757 ACCGTGCCATATCCTTGTCATAT 59.672 43.478 0.00 0.00 0.00 1.78
4263 4425 4.202461 ACCGTGCCATATCCTTGTCATATT 60.202 41.667 0.00 0.00 0.00 1.28
4264 4426 4.154737 CCGTGCCATATCCTTGTCATATTG 59.845 45.833 0.00 0.00 0.00 1.90
4265 4427 4.154737 CGTGCCATATCCTTGTCATATTGG 59.845 45.833 0.00 0.00 0.00 3.16
4356 4518 2.158856 TCTTGGTCAGCTATGCATGGAG 60.159 50.000 15.09 2.86 0.00 3.86
4368 4530 2.646930 TGCATGGAGTGATGGCTTTAG 58.353 47.619 0.00 0.00 0.00 1.85
4387 4549 6.142958 GCTTTAGTCTGCAAAAAGATTGTCAC 59.857 38.462 12.25 0.00 33.05 3.67
4413 4575 9.512588 CAATTAGATTATGTCCTAGCCATTTCT 57.487 33.333 0.00 5.32 0.00 2.52
4427 4589 5.259632 AGCCATTTCTTGAGCTGAGTATTT 58.740 37.500 0.00 0.00 32.66 1.40
4436 4598 8.846943 TCTTGAGCTGAGTATTTCACAAAATA 57.153 30.769 0.00 0.00 36.49 1.40
4471 4633 3.069300 TGATGACAAGGCTCTATCTCTGC 59.931 47.826 0.00 0.00 0.00 4.26
4503 4665 3.257873 TGGTGCCTGTTTGGTGAAATATG 59.742 43.478 0.00 0.00 38.35 1.78
4532 4694 8.143835 ACCTTTAATGTTGAAGGAGTGAAAATG 58.856 33.333 19.48 0.00 44.27 2.32
4533 4695 8.143835 CCTTTAATGTTGAAGGAGTGAAAATGT 58.856 33.333 9.95 0.00 44.27 2.71
4538 4700 8.585471 ATGTTGAAGGAGTGAAAATGTATCAT 57.415 30.769 0.00 0.00 0.00 2.45
4539 4701 8.408043 TGTTGAAGGAGTGAAAATGTATCATT 57.592 30.769 0.00 0.00 0.00 2.57
4544 4706 9.788960 GAAGGAGTGAAAATGTATCATTTAACC 57.211 33.333 7.91 7.56 0.00 2.85
4580 4742 0.328258 ACCACCCACTATCAACTGGC 59.672 55.000 0.00 0.00 0.00 4.85
4681 4843 7.453393 AGAGTGGAGTGAGAAAAATACAATGA 58.547 34.615 0.00 0.00 0.00 2.57
4687 4849 9.696917 GGAGTGAGAAAAATACAATGAAAATGT 57.303 29.630 0.00 0.00 34.81 2.71
4741 4903 1.038280 ACTAACGGATCCATCGGTCC 58.962 55.000 13.41 0.00 39.09 4.46
4800 4962 6.173339 GGATCACATTTGAGACCTTCACTAA 58.827 40.000 0.00 0.00 34.94 2.24
4805 4967 5.071788 ACATTTGAGACCTTCACTAACTGGA 59.928 40.000 0.00 0.00 34.94 3.86
4866 5028 2.236766 GATTTGCCCTGCTATGCATCT 58.763 47.619 0.19 0.00 38.13 2.90
4887 5049 3.272574 ACCATGTCCTTCTGCTACATG 57.727 47.619 7.52 7.52 46.44 3.21
4900 5062 2.025416 TGCTACATGTGCCCATTTACCT 60.025 45.455 9.11 0.00 0.00 3.08
4907 5069 1.211949 GTGCCCATTTACCTGCTCCTA 59.788 52.381 0.00 0.00 0.00 2.94
4952 5114 2.093288 CCACTCACATATCCACTGTGCT 60.093 50.000 1.29 0.00 42.93 4.40
4972 5134 4.082787 TGCTACTAGCTTTGCAAATTGACC 60.083 41.667 13.23 0.00 42.97 4.02
5071 5233 1.592081 CCATGTGTTTGTTGGTTTGCG 59.408 47.619 0.00 0.00 0.00 4.85
5072 5234 1.592081 CATGTGTTTGTTGGTTTGCGG 59.408 47.619 0.00 0.00 0.00 5.69
5101 5263 1.685803 CCTGTGAGGGCCAAATGCATA 60.686 52.381 6.18 0.00 43.89 3.14
5163 5325 3.182152 ACCATAGACCAGCCACTACTTT 58.818 45.455 0.00 0.00 0.00 2.66
5169 5331 3.389983 AGACCAGCCACTACTTTGTTACA 59.610 43.478 0.00 0.00 0.00 2.41
5257 5419 5.400485 CAGCACATACAAAAGTCTTTCTTGC 59.600 40.000 0.00 2.30 36.40 4.01
5266 5428 6.091169 ACAAAAGTCTTTCTTGCAACAACATG 59.909 34.615 0.00 0.00 36.40 3.21
5275 5437 3.961477 TGCAACAACATGACTACACAC 57.039 42.857 0.00 0.00 0.00 3.82
5288 5450 6.263516 TGACTACACACGTAAAGAAGCTAT 57.736 37.500 0.00 0.00 0.00 2.97
5384 5552 5.105513 TGCACGGAGATGATTTAGTAGTCAA 60.106 40.000 0.00 0.00 0.00 3.18
5387 5555 6.473778 CACGGAGATGATTTAGTAGTCAACAG 59.526 42.308 0.00 0.00 0.00 3.16
5414 5582 5.335976 GGTCCAATTTGAACTAGAAGCCTTG 60.336 44.000 0.00 0.00 0.00 3.61
5415 5583 5.473504 GTCCAATTTGAACTAGAAGCCTTGA 59.526 40.000 0.00 0.00 0.00 3.02
5451 5619 2.673368 CCTTAGCACAGCCTTTTAGTCG 59.327 50.000 0.00 0.00 0.00 4.18
5497 5665 2.308690 GAGGGAATACGGTGCTAGAGT 58.691 52.381 0.00 0.00 0.00 3.24
5502 5670 4.989168 GGGAATACGGTGCTAGAGTAAATG 59.011 45.833 0.00 0.00 0.00 2.32
5509 5677 5.163301 ACGGTGCTAGAGTAAATGGATTCAT 60.163 40.000 0.00 0.00 34.56 2.57
5535 5703 7.650104 TGTTATTTTTAACTCCAGGAAAAAGCG 59.350 33.333 3.68 0.00 35.98 4.68
5539 5707 0.182775 ACTCCAGGAAAAAGCGTGGT 59.817 50.000 0.00 0.00 42.77 4.16
5788 6007 3.190327 TGTTCACTGGTTTGTCTTGTGTG 59.810 43.478 0.00 0.00 0.00 3.82
5797 6016 4.212214 GGTTTGTCTTGTGTGATCTCTGTC 59.788 45.833 0.00 0.00 0.00 3.51
5881 6100 7.667635 TGGTTGTGATATAACACCTTTTGATGA 59.332 33.333 10.31 0.00 39.69 2.92
5886 6105 9.353999 GTGATATAACACCTTTTGATGAAAACC 57.646 33.333 1.79 0.00 35.07 3.27
6074 6295 9.829507 TTTTTCTTATTTGAGGCAATCTTTTCA 57.170 25.926 0.00 0.00 0.00 2.69
6076 6297 9.643693 TTTCTTATTTGAGGCAATCTTTTCATC 57.356 29.630 0.00 0.00 0.00 2.92
6101 6322 4.580167 TCAAGAAATCACTGGGTGAAGTTG 59.420 41.667 4.46 6.45 45.96 3.16
6126 6347 4.751060 CAAGCAACATCATTAAGGCACAT 58.249 39.130 0.00 0.00 0.00 3.21
6146 6367 6.380995 CACATTGCATGCTTAAGTTCTAACA 58.619 36.000 20.33 0.00 0.00 2.41
6223 6444 4.803426 GGAGCGGTCTGGTCTGCG 62.803 72.222 15.18 0.00 44.62 5.18
6361 6585 2.089980 CTCTGAAGATTTGCACCCAGG 58.910 52.381 0.00 0.00 0.00 4.45
6382 6606 6.013725 CCAGGCCTCCATGTTAGTATATAACA 60.014 42.308 0.00 3.18 41.05 2.41
6567 6792 2.102070 TTGATTAACACGGGCGTCAT 57.898 45.000 0.00 0.00 0.00 3.06
6630 6857 7.121315 GGTTCATTACATAACAAGAGAAAGGCT 59.879 37.037 0.00 0.00 0.00 4.58
6667 6894 5.645497 ACAGAGATGCAATTTTCAGGAGTAC 59.355 40.000 0.00 0.00 0.00 2.73
6698 9647 4.019174 GCATGGGATTCTTCAGAAGGAAA 58.981 43.478 10.42 0.00 37.48 3.13
6701 9650 4.860022 TGGGATTCTTCAGAAGGAAATCC 58.140 43.478 23.91 23.91 39.44 3.01
6706 9655 7.112779 GGATTCTTCAGAAGGAAATCCAGTAA 58.887 38.462 25.59 7.19 39.71 2.24
6716 9667 4.086457 GGAAATCCAGTAAGCTTTTCCCA 58.914 43.478 3.20 0.00 39.48 4.37
6718 9669 2.178912 TCCAGTAAGCTTTTCCCACG 57.821 50.000 3.20 0.00 0.00 4.94
6722 9673 2.223377 CAGTAAGCTTTTCCCACGTGTC 59.777 50.000 15.65 0.00 0.00 3.67
6725 9676 0.535102 AGCTTTTCCCACGTGTCAGG 60.535 55.000 15.65 8.95 0.00 3.86
6735 9686 2.483714 CCACGTGTCAGGGGAATAGATG 60.484 54.545 15.65 0.00 36.61 2.90
6736 9687 1.762957 ACGTGTCAGGGGAATAGATGG 59.237 52.381 0.00 0.00 0.00 3.51
6740 9691 1.981495 GTCAGGGGAATAGATGGGAGG 59.019 57.143 0.00 0.00 0.00 4.30
6862 10050 5.819991 ACAATCACAATACTCAACATCCCT 58.180 37.500 0.00 0.00 0.00 4.20
6863 10051 6.248433 ACAATCACAATACTCAACATCCCTT 58.752 36.000 0.00 0.00 0.00 3.95
6928 10127 2.178912 TCCAAAGGTTGTAAGCCGAG 57.821 50.000 0.00 0.00 0.00 4.63
6942 10148 1.917336 GCCGAGGAACATACCCCCAA 61.917 60.000 0.00 0.00 0.00 4.12
6951 10167 5.015817 AGGAACATACCCCCAAAGTCATAAA 59.984 40.000 0.00 0.00 0.00 1.40
6977 10193 0.672889 TGCATCGCAAATGTTGTGGT 59.327 45.000 2.00 0.00 41.37 4.16
6991 10207 1.507140 TGTGGTTGGAGTGGAAGTCT 58.493 50.000 0.00 0.00 36.25 3.24
7069 10289 1.077086 TAGGGTGTAGCCGTGGTCA 59.923 57.895 0.00 0.00 38.44 4.02
7075 10295 1.001181 GTGTAGCCGTGGTCAAGGTAA 59.999 52.381 4.97 0.00 32.29 2.85
7116 10337 2.185310 GATGTCGACTTGGGGTGGCT 62.185 60.000 17.92 0.00 0.00 4.75
7123 10344 3.099841 TTGGGGTGGCTGGTGTCA 61.100 61.111 0.00 0.00 0.00 3.58
7144 10365 2.758327 TAGTCGCCGTGGAGCCAT 60.758 61.111 0.00 0.00 0.00 4.40
7171 10393 2.813908 GGGCGCTGTGTTAGTCGG 60.814 66.667 7.64 0.00 0.00 4.79
7208 10447 0.326618 AGGATGAAGACGGGGTGGAT 60.327 55.000 0.00 0.00 0.00 3.41
7213 10452 1.229529 AAGACGGGGTGGATGAGGT 60.230 57.895 0.00 0.00 0.00 3.85
7216 10455 3.402681 CGGGGTGGATGAGGTGCT 61.403 66.667 0.00 0.00 0.00 4.40
7253 10492 2.640989 CGAGGACACGTCGTGGAA 59.359 61.111 27.77 0.00 37.94 3.53
7298 10539 1.078918 CCGAGCATGCTGGACAGAA 60.079 57.895 28.94 0.00 0.00 3.02
7301 10542 1.654317 GAGCATGCTGGACAGAAGAG 58.346 55.000 28.27 0.00 0.00 2.85
7431 10676 1.066858 AGTTGTACGCCATGTCAGAGG 60.067 52.381 0.00 0.00 0.00 3.69
7434 10679 2.731571 TACGCCATGTCAGAGGGGC 61.732 63.158 10.10 0.00 41.17 5.80
7439 10697 1.340399 CCATGTCAGAGGGGCTAGCA 61.340 60.000 18.24 0.00 0.00 3.49
7442 10700 0.031716 TGTCAGAGGGGCTAGCAGAT 60.032 55.000 18.24 0.05 0.00 2.90
7446 10704 0.762461 AGAGGGGCTAGCAGATGACC 60.762 60.000 18.24 6.99 0.00 4.02
7481 10748 1.226262 GCCAATCGGTGTGGGGTAT 59.774 57.895 2.75 0.00 36.58 2.73
7484 10751 2.488347 GCCAATCGGTGTGGGGTATAAT 60.488 50.000 2.75 0.00 36.58 1.28
7488 10755 1.134340 TCGGTGTGGGGTATAATGTGC 60.134 52.381 0.00 0.00 0.00 4.57
7489 10756 1.407575 CGGTGTGGGGTATAATGTGCA 60.408 52.381 0.00 0.00 0.00 4.57
7493 10760 4.202419 GGTGTGGGGTATAATGTGCAGATA 60.202 45.833 0.00 0.00 0.00 1.98
7527 10794 3.260884 GGTTGGAGTAGATGAAGTGGTCA 59.739 47.826 0.00 0.00 41.67 4.02
7579 10847 0.039437 GTGCTGGACGAAGACGAAGA 60.039 55.000 0.00 0.00 42.66 2.87
7586 10855 1.473278 GACGAAGACGAAGAGGTGGAT 59.527 52.381 0.00 0.00 42.66 3.41
7587 10856 1.202582 ACGAAGACGAAGAGGTGGATG 59.797 52.381 0.00 0.00 42.66 3.51
7588 10857 1.472878 CGAAGACGAAGAGGTGGATGA 59.527 52.381 0.00 0.00 42.66 2.92
7590 10859 1.187087 AGACGAAGAGGTGGATGACC 58.813 55.000 0.00 0.00 46.58 4.02
7674 10992 1.292223 GTGGTGCTCGAAGTAGGCA 59.708 57.895 0.00 0.00 0.00 4.75
7681 10999 1.204941 GCTCGAAGTAGGCAAGGAAGA 59.795 52.381 0.00 0.00 0.00 2.87
7691 11009 1.460273 GCAAGGAAGAAACCCGGCAA 61.460 55.000 0.00 0.00 32.30 4.52
7736 11054 2.444256 GGCATTCCCGCTCCTAGGT 61.444 63.158 9.08 0.00 0.00 3.08
7742 11060 2.518825 CCGCTCCTAGGTAGGCGT 60.519 66.667 28.96 0.00 45.11 5.68
7744 11062 1.359475 CGCTCCTAGGTAGGCGTTC 59.641 63.158 25.91 5.89 43.31 3.95
7745 11063 1.102222 CGCTCCTAGGTAGGCGTTCT 61.102 60.000 25.91 0.00 43.31 3.01
7753 11071 1.090052 GGTAGGCGTTCTGGTGCATC 61.090 60.000 0.00 0.00 0.00 3.91
7779 11100 3.562779 GAAGTCGACGCGTGGGGAA 62.563 63.158 20.70 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
349 350 7.941919 ACCTATTTTCAAAGGACACTCTTTTC 58.058 34.615 0.00 0.00 35.04 2.29
474 476 6.616947 CCCAAACGTGTGTAAAATATGTCAT 58.383 36.000 4.73 0.00 0.00 3.06
475 477 5.563085 GCCCAAACGTGTGTAAAATATGTCA 60.563 40.000 4.73 0.00 0.00 3.58
509 511 0.467290 AAGAGCCTCACCCGCAAAAA 60.467 50.000 0.00 0.00 0.00 1.94
510 512 1.150536 AAGAGCCTCACCCGCAAAA 59.849 52.632 0.00 0.00 0.00 2.44
511 513 1.600636 CAAGAGCCTCACCCGCAAA 60.601 57.895 0.00 0.00 0.00 3.68
512 514 2.032528 CAAGAGCCTCACCCGCAA 59.967 61.111 0.00 0.00 0.00 4.85
513 515 2.337879 AAACAAGAGCCTCACCCGCA 62.338 55.000 0.00 0.00 0.00 5.69
514 516 1.172812 AAAACAAGAGCCTCACCCGC 61.173 55.000 0.00 0.00 0.00 6.13
515 517 0.593128 CAAAACAAGAGCCTCACCCG 59.407 55.000 0.00 0.00 0.00 5.28
516 518 0.315251 GCAAAACAAGAGCCTCACCC 59.685 55.000 0.00 0.00 0.00 4.61
517 519 1.032014 TGCAAAACAAGAGCCTCACC 58.968 50.000 0.00 0.00 0.00 4.02
518 520 2.869233 TTGCAAAACAAGAGCCTCAC 57.131 45.000 0.00 0.00 33.24 3.51
631 633 3.845109 ATTGTCCACCCCCAACTATTT 57.155 42.857 0.00 0.00 0.00 1.40
832 836 3.499737 CCCAATGCTCCGTGCGTC 61.500 66.667 0.00 0.00 46.63 5.19
844 848 0.628668 ATTGGAGGAGAGCCCCCAAT 60.629 55.000 5.03 5.03 44.04 3.16
2058 2073 2.355444 CAGTGCTGAACATGTGACACAA 59.645 45.455 13.23 0.00 0.00 3.33
2125 2140 8.126074 TGTCTATGTAAACAACAAATGTGTGAC 58.874 33.333 0.00 0.00 42.99 3.67
2520 2537 1.229975 CGGTCACTGAGCACATGCAA 61.230 55.000 6.64 0.00 45.16 4.08
2661 2678 6.611613 AATTGGAGAGTGAGTTGTGAGATA 57.388 37.500 0.00 0.00 0.00 1.98
2724 2741 5.982356 AGCACACTCATCACATATACAACT 58.018 37.500 0.00 0.00 0.00 3.16
2796 2822 7.076842 TCTGTTCTCTTCTGTTTTGTTCTTG 57.923 36.000 0.00 0.00 0.00 3.02
2797 2823 6.183360 GCTCTGTTCTCTTCTGTTTTGTTCTT 60.183 38.462 0.00 0.00 0.00 2.52
2928 2960 1.171308 TAGTCTAGCCGCGTGAAGTT 58.829 50.000 4.92 0.00 0.00 2.66
2959 2991 4.269123 AGAGAGCGCGATAGATATTACTCG 59.731 45.833 12.10 0.00 39.76 4.18
2974 3006 3.377346 TCCAAATAGATCAGAGAGCGC 57.623 47.619 0.00 0.00 0.00 5.92
3048 3080 3.460857 GTCATATGAGGGACCAGTCAC 57.539 52.381 5.42 0.00 0.00 3.67
3070 3102 6.156256 AGTGTGGAGGTATTACTATGAAAGCA 59.844 38.462 0.00 0.00 0.00 3.91
3114 3148 4.439016 GCTAGAGAGTTAAGACCCTTCGTG 60.439 50.000 0.00 0.00 0.00 4.35
3128 3162 1.755977 CGGGAGGAATGGCTAGAGAGT 60.756 57.143 0.00 0.00 0.00 3.24
3181 3215 5.403558 TTCAGGACTATGACTATGGAGGA 57.596 43.478 0.00 0.00 0.00 3.71
3243 3277 6.012658 TCCATGTATTCTTGTTCTTTGTGC 57.987 37.500 0.00 0.00 0.00 4.57
3277 3311 7.919690 CAGAATAACACTTCTGTTTTCACTCA 58.080 34.615 5.81 0.00 44.60 3.41
3306 3340 4.676196 GCTTCAAATCGACAAATGCCAGAT 60.676 41.667 0.00 0.00 0.00 2.90
3354 3388 4.893608 TGCTAGACAACTTATGCTTCACA 58.106 39.130 0.00 0.00 0.00 3.58
3369 3403 2.223377 CGGTTGGTCACTTTTGCTAGAC 59.777 50.000 0.00 0.00 0.00 2.59
3388 3422 7.787725 AGCTCTTTATGTTTTCCTATAACGG 57.212 36.000 0.00 0.00 0.00 4.44
3389 3423 9.745880 TCTAGCTCTTTATGTTTTCCTATAACG 57.254 33.333 0.00 0.00 0.00 3.18
3441 3600 9.284968 CCCTTGTTGAAATCTCTAAAAAGACTA 57.715 33.333 0.00 0.00 0.00 2.59
3442 3601 7.998964 TCCCTTGTTGAAATCTCTAAAAAGACT 59.001 33.333 0.00 0.00 0.00 3.24
3443 3602 8.076781 GTCCCTTGTTGAAATCTCTAAAAAGAC 58.923 37.037 0.00 0.00 0.00 3.01
3444 3603 7.998964 AGTCCCTTGTTGAAATCTCTAAAAAGA 59.001 33.333 0.00 0.00 0.00 2.52
3445 3604 8.171164 AGTCCCTTGTTGAAATCTCTAAAAAG 57.829 34.615 0.00 0.00 0.00 2.27
3446 3605 9.063615 GTAGTCCCTTGTTGAAATCTCTAAAAA 57.936 33.333 0.00 0.00 0.00 1.94
3447 3606 8.215050 TGTAGTCCCTTGTTGAAATCTCTAAAA 58.785 33.333 0.00 0.00 0.00 1.52
3448 3607 7.741785 TGTAGTCCCTTGTTGAAATCTCTAAA 58.258 34.615 0.00 0.00 0.00 1.85
3449 3608 7.311092 TGTAGTCCCTTGTTGAAATCTCTAA 57.689 36.000 0.00 0.00 0.00 2.10
3450 3609 6.928348 TGTAGTCCCTTGTTGAAATCTCTA 57.072 37.500 0.00 0.00 0.00 2.43
3451 3610 5.825593 TGTAGTCCCTTGTTGAAATCTCT 57.174 39.130 0.00 0.00 0.00 3.10
3452 3611 7.227512 CCATATGTAGTCCCTTGTTGAAATCTC 59.772 40.741 1.24 0.00 0.00 2.75
3453 3612 7.056635 CCATATGTAGTCCCTTGTTGAAATCT 58.943 38.462 1.24 0.00 0.00 2.40
3454 3613 6.263168 CCCATATGTAGTCCCTTGTTGAAATC 59.737 42.308 1.24 0.00 0.00 2.17
3455 3614 6.129179 CCCATATGTAGTCCCTTGTTGAAAT 58.871 40.000 1.24 0.00 0.00 2.17
3456 3615 5.505780 CCCATATGTAGTCCCTTGTTGAAA 58.494 41.667 1.24 0.00 0.00 2.69
3457 3616 4.080015 CCCCATATGTAGTCCCTTGTTGAA 60.080 45.833 1.24 0.00 0.00 2.69
3458 3617 3.458118 CCCCATATGTAGTCCCTTGTTGA 59.542 47.826 1.24 0.00 0.00 3.18
3459 3618 3.820557 CCCCATATGTAGTCCCTTGTTG 58.179 50.000 1.24 0.00 0.00 3.33
3460 3619 2.174854 GCCCCATATGTAGTCCCTTGTT 59.825 50.000 1.24 0.00 0.00 2.83
3461 3620 1.774856 GCCCCATATGTAGTCCCTTGT 59.225 52.381 1.24 0.00 0.00 3.16
3462 3621 1.774254 TGCCCCATATGTAGTCCCTTG 59.226 52.381 1.24 0.00 0.00 3.61
3463 3622 2.206322 TGCCCCATATGTAGTCCCTT 57.794 50.000 1.24 0.00 0.00 3.95
3464 3623 2.206322 TTGCCCCATATGTAGTCCCT 57.794 50.000 1.24 0.00 0.00 4.20
3465 3624 3.306472 TTTTGCCCCATATGTAGTCCC 57.694 47.619 1.24 0.00 0.00 4.46
3466 3625 4.469657 TCATTTTGCCCCATATGTAGTCC 58.530 43.478 1.24 0.00 0.00 3.85
3467 3626 5.009010 CACTCATTTTGCCCCATATGTAGTC 59.991 44.000 1.24 0.00 0.00 2.59
3468 3627 4.889409 CACTCATTTTGCCCCATATGTAGT 59.111 41.667 1.24 0.00 0.00 2.73
3469 3628 5.132502 TCACTCATTTTGCCCCATATGTAG 58.867 41.667 1.24 0.00 0.00 2.74
3470 3629 5.122707 TCACTCATTTTGCCCCATATGTA 57.877 39.130 1.24 0.00 0.00 2.29
3471 3630 3.979911 TCACTCATTTTGCCCCATATGT 58.020 40.909 1.24 0.00 0.00 2.29
3472 3631 5.303589 AGATTCACTCATTTTGCCCCATATG 59.696 40.000 0.00 0.00 0.00 1.78
3473 3632 5.461327 AGATTCACTCATTTTGCCCCATAT 58.539 37.500 0.00 0.00 0.00 1.78
3474 3633 4.870636 AGATTCACTCATTTTGCCCCATA 58.129 39.130 0.00 0.00 0.00 2.74
3475 3634 3.716431 AGATTCACTCATTTTGCCCCAT 58.284 40.909 0.00 0.00 0.00 4.00
3476 3635 3.173953 AGATTCACTCATTTTGCCCCA 57.826 42.857 0.00 0.00 0.00 4.96
3477 3636 4.016444 TGTAGATTCACTCATTTTGCCCC 58.984 43.478 0.00 0.00 0.00 5.80
3478 3637 4.702131 AGTGTAGATTCACTCATTTTGCCC 59.298 41.667 0.00 0.00 44.07 5.36
3479 3638 5.886960 AGTGTAGATTCACTCATTTTGCC 57.113 39.130 0.00 0.00 44.07 4.52
3510 3669 9.511272 ACTACAACATACGGATGTATATAGACA 57.489 33.333 23.06 2.07 45.93 3.41
3517 3676 8.826710 CAATTGAACTACAACATACGGATGTAT 58.173 33.333 15.10 8.21 45.93 2.29
3518 3677 8.035984 TCAATTGAACTACAACATACGGATGTA 58.964 33.333 15.10 0.00 45.93 2.29
3520 3679 7.302350 TCAATTGAACTACAACATACGGATG 57.698 36.000 5.94 5.94 41.52 3.51
3521 3680 7.915293 TTCAATTGAACTACAACATACGGAT 57.085 32.000 16.91 0.00 41.52 4.18
3522 3681 7.308109 GGTTTCAATTGAACTACAACATACGGA 60.308 37.037 20.35 0.00 41.52 4.69
3523 3682 6.799925 GGTTTCAATTGAACTACAACATACGG 59.200 38.462 20.35 0.00 41.52 4.02
3524 3683 7.581476 AGGTTTCAATTGAACTACAACATACG 58.419 34.615 20.35 0.00 41.52 3.06
3525 3684 8.784043 AGAGGTTTCAATTGAACTACAACATAC 58.216 33.333 20.35 11.95 41.52 2.39
3526 3685 8.918202 AGAGGTTTCAATTGAACTACAACATA 57.082 30.769 20.35 0.00 41.52 2.29
3527 3686 7.823745 AGAGGTTTCAATTGAACTACAACAT 57.176 32.000 20.35 12.90 41.52 2.71
3528 3687 8.740123 TTAGAGGTTTCAATTGAACTACAACA 57.260 30.769 20.35 1.32 41.52 3.33
3534 3693 9.190317 AGTCTTTTTAGAGGTTTCAATTGAACT 57.810 29.630 20.35 14.82 33.13 3.01
3535 3694 9.803315 AAGTCTTTTTAGAGGTTTCAATTGAAC 57.197 29.630 20.35 14.54 33.13 3.18
3552 3711 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3553 3712 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3554 3713 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3555 3714 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3556 3715 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3557 3716 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3558 3717 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3559 3718 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3560 3719 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
3561 3720 9.471702 CTAATACTCCCTCCGTTCCTAAATATA 57.528 37.037 0.00 0.00 0.00 0.86
3562 3721 7.954620 ACTAATACTCCCTCCGTTCCTAAATAT 59.045 37.037 0.00 0.00 0.00 1.28
3563 3722 7.300658 ACTAATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
3564 3723 6.141790 ACTAATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
3565 3724 5.522641 ACTAATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
3566 3725 5.134725 ACTAATACTCCCTCCGTTCCTAA 57.865 43.478 0.00 0.00 0.00 2.69
3567 3726 4.803329 ACTAATACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
3568 3727 3.684408 ACTAATACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
3569 3728 4.892345 ACTAACTAATACTCCCTCCGTTCC 59.108 45.833 0.00 0.00 0.00 3.62
3570 3729 6.770303 AGTACTAACTAATACTCCCTCCGTTC 59.230 42.308 0.00 0.00 32.84 3.95
3571 3730 6.667661 AGTACTAACTAATACTCCCTCCGTT 58.332 40.000 0.00 0.00 32.84 4.44
3572 3731 6.126652 TGAGTACTAACTAATACTCCCTCCGT 60.127 42.308 0.00 0.00 44.50 4.69
3573 3732 6.204495 GTGAGTACTAACTAATACTCCCTCCG 59.796 46.154 2.77 0.00 44.50 4.63
3574 3733 7.059156 TGTGAGTACTAACTAATACTCCCTCC 58.941 42.308 11.79 0.00 44.50 4.30
3575 3734 8.694581 ATGTGAGTACTAACTAATACTCCCTC 57.305 38.462 11.79 0.00 44.50 4.30
3576 3735 9.571816 GTATGTGAGTACTAACTAATACTCCCT 57.428 37.037 11.79 0.00 44.50 4.20
3577 3736 9.571816 AGTATGTGAGTACTAACTAATACTCCC 57.428 37.037 13.93 0.00 44.50 4.30
3637 3796 7.846644 AGACATTTTTGCAGTTCAAATTGAA 57.153 28.000 4.03 4.03 43.53 2.69
3638 3797 7.846644 AAGACATTTTTGCAGTTCAAATTGA 57.153 28.000 9.36 0.00 43.53 2.57
3639 3798 8.602328 TGTAAGACATTTTTGCAGTTCAAATTG 58.398 29.630 0.00 0.00 43.53 2.32
3640 3799 8.715191 TGTAAGACATTTTTGCAGTTCAAATT 57.285 26.923 0.00 0.00 43.53 1.82
3641 3800 8.891671 ATGTAAGACATTTTTGCAGTTCAAAT 57.108 26.923 0.00 0.00 36.22 2.32
3642 3801 8.715191 AATGTAAGACATTTTTGCAGTTCAAA 57.285 26.923 0.00 0.00 45.80 2.69
3643 3802 9.462174 CTAATGTAAGACATTTTTGCAGTTCAA 57.538 29.630 9.92 0.00 45.80 2.69
3644 3803 8.629158 ACTAATGTAAGACATTTTTGCAGTTCA 58.371 29.630 9.92 0.00 45.80 3.18
3645 3804 9.463443 AACTAATGTAAGACATTTTTGCAGTTC 57.537 29.630 9.92 0.00 45.80 3.01
3646 3805 9.816354 AAACTAATGTAAGACATTTTTGCAGTT 57.184 25.926 9.92 9.89 45.80 3.16
3654 3813 9.449719 CCCTCTGTAAACTAATGTAAGACATTT 57.550 33.333 9.92 0.00 45.80 2.32
3656 3815 8.375493 TCCCTCTGTAAACTAATGTAAGACAT 57.625 34.615 0.00 0.00 41.31 3.06
3657 3816 7.453752 ACTCCCTCTGTAAACTAATGTAAGACA 59.546 37.037 0.00 0.00 0.00 3.41
3658 3817 7.838884 ACTCCCTCTGTAAACTAATGTAAGAC 58.161 38.462 0.00 0.00 0.00 3.01
3659 3818 9.710818 ATACTCCCTCTGTAAACTAATGTAAGA 57.289 33.333 0.00 0.00 0.00 2.10
3663 3822 9.435570 ACATATACTCCCTCTGTAAACTAATGT 57.564 33.333 0.00 0.00 0.00 2.71
3664 3823 9.915629 GACATATACTCCCTCTGTAAACTAATG 57.084 37.037 0.00 0.00 0.00 1.90
3665 3824 9.884814 AGACATATACTCCCTCTGTAAACTAAT 57.115 33.333 0.00 0.00 0.00 1.73
3668 3827 9.303116 CATAGACATATACTCCCTCTGTAAACT 57.697 37.037 0.00 0.00 0.00 2.66
3669 3828 8.524487 CCATAGACATATACTCCCTCTGTAAAC 58.476 40.741 0.00 0.00 0.00 2.01
3670 3829 8.453681 TCCATAGACATATACTCCCTCTGTAAA 58.546 37.037 0.00 0.00 0.00 2.01
3671 3830 7.996788 TCCATAGACATATACTCCCTCTGTAA 58.003 38.462 0.00 0.00 0.00 2.41
3672 3831 7.584396 TCCATAGACATATACTCCCTCTGTA 57.416 40.000 0.00 0.00 0.00 2.74
3673 3832 6.470456 TCCATAGACATATACTCCCTCTGT 57.530 41.667 0.00 0.00 0.00 3.41
3674 3833 7.147759 CCATTCCATAGACATATACTCCCTCTG 60.148 44.444 0.00 0.00 0.00 3.35
3675 3834 6.900186 CCATTCCATAGACATATACTCCCTCT 59.100 42.308 0.00 0.00 0.00 3.69
3676 3835 6.897966 TCCATTCCATAGACATATACTCCCTC 59.102 42.308 0.00 0.00 0.00 4.30
3677 3836 6.815880 TCCATTCCATAGACATATACTCCCT 58.184 40.000 0.00 0.00 0.00 4.20
3678 3837 7.496346 TTCCATTCCATAGACATATACTCCC 57.504 40.000 0.00 0.00 0.00 4.30
3793 3952 7.822161 CCATAGTGGTGGAAATTGATAATGA 57.178 36.000 0.00 0.00 42.02 2.57
3856 4015 7.656948 CCCGGTATTTTACTCCGTCATTATTAA 59.343 37.037 0.00 0.00 42.30 1.40
3859 4018 5.305128 TCCCGGTATTTTACTCCGTCATTAT 59.695 40.000 0.00 0.00 42.30 1.28
3861 4020 3.451902 TCCCGGTATTTTACTCCGTCATT 59.548 43.478 0.00 0.00 42.30 2.57
3869 4028 7.066645 GCTATTTGTTCTTCCCGGTATTTTACT 59.933 37.037 0.00 0.00 0.00 2.24
3879 4038 4.497473 TGTTTGCTATTTGTTCTTCCCG 57.503 40.909 0.00 0.00 0.00 5.14
3918 4078 6.580788 TCATCCTTCTAATTGCTCTCTTCAG 58.419 40.000 0.00 0.00 0.00 3.02
3952 4112 4.057432 CAACATGCCTAAACCCACTTTTG 58.943 43.478 0.00 0.00 0.00 2.44
3953 4113 3.709141 ACAACATGCCTAAACCCACTTTT 59.291 39.130 0.00 0.00 0.00 2.27
3962 4122 3.754965 AGCAGAGAACAACATGCCTAAA 58.245 40.909 0.00 0.00 39.51 1.85
3991 4151 2.553247 CCTCCAGGGAAAACACTCCTTC 60.553 54.545 0.00 0.00 37.23 3.46
4027 4188 0.543749 AGGGGCAGAGACACAATAGC 59.456 55.000 0.00 0.00 0.00 2.97
4035 4196 3.433740 CCCAGTATAAAAGGGGCAGAGAC 60.434 52.174 0.00 0.00 38.98 3.36
4053 4214 0.679002 CAGCTTGACCCATCACCCAG 60.679 60.000 0.00 0.00 33.38 4.45
4057 4219 1.555075 TCCTACAGCTTGACCCATCAC 59.445 52.381 0.00 0.00 33.38 3.06
4122 4284 5.627499 TCAGCATTATCCTGTTGAACAAC 57.373 39.130 10.28 10.28 41.50 3.32
4134 4296 7.229306 TGTGGGATATCAAGTTTCAGCATTATC 59.771 37.037 4.83 0.00 0.00 1.75
4137 4299 5.263599 TGTGGGATATCAAGTTTCAGCATT 58.736 37.500 4.83 0.00 0.00 3.56
4204 4366 4.597079 CTTTAAAAGAAGAACGCACAGCA 58.403 39.130 0.00 0.00 0.00 4.41
4211 4373 8.379902 ACACAAAAATGCTTTAAAAGAAGAACG 58.620 29.630 0.00 0.00 0.00 3.95
4226 4388 2.219903 GGCACGGTTAACACAAAAATGC 59.780 45.455 8.10 5.80 0.00 3.56
4227 4389 3.448686 TGGCACGGTTAACACAAAAATG 58.551 40.909 8.10 0.00 0.00 2.32
4230 4392 4.082679 GGATATGGCACGGTTAACACAAAA 60.083 41.667 8.10 0.00 0.00 2.44
4242 4404 4.154737 CCAATATGACAAGGATATGGCACG 59.845 45.833 0.00 0.00 42.20 5.34
4244 4406 5.581350 TCCAATATGACAAGGATATGGCA 57.419 39.130 0.00 0.00 43.89 4.92
4245 4407 6.182627 TCATCCAATATGACAAGGATATGGC 58.817 40.000 0.00 0.00 38.77 4.40
4254 4416 7.700022 TGTGACATTTCATCCAATATGACAA 57.300 32.000 0.00 0.00 33.11 3.18
4258 4420 9.999009 GCTATATGTGACATTTCATCCAATATG 57.001 33.333 2.29 0.00 33.11 1.78
4259 4421 9.970553 AGCTATATGTGACATTTCATCCAATAT 57.029 29.630 2.29 0.00 33.11 1.28
4260 4422 9.797642 AAGCTATATGTGACATTTCATCCAATA 57.202 29.630 2.29 0.00 33.11 1.90
4261 4423 8.701908 AAGCTATATGTGACATTTCATCCAAT 57.298 30.769 2.29 0.00 33.11 3.16
4262 4424 7.041848 CGAAGCTATATGTGACATTTCATCCAA 60.042 37.037 2.29 0.00 33.11 3.53
4263 4425 6.424812 CGAAGCTATATGTGACATTTCATCCA 59.575 38.462 2.29 0.00 33.11 3.41
4264 4426 6.646653 TCGAAGCTATATGTGACATTTCATCC 59.353 38.462 2.29 0.00 33.11 3.51
4265 4427 7.643528 TCGAAGCTATATGTGACATTTCATC 57.356 36.000 2.29 0.00 33.11 2.92
4356 4518 4.503741 TTTTGCAGACTAAAGCCATCAC 57.496 40.909 0.00 0.00 0.00 3.06
4368 4530 6.833342 AATTGTGACAATCTTTTTGCAGAC 57.167 33.333 11.70 0.00 0.00 3.51
4387 4549 9.512588 AGAAATGGCTAGGACATAATCTAATTG 57.487 33.333 0.00 0.00 29.42 2.32
4427 4589 5.948758 TCACTATGCCATTGGTATTTTGTGA 59.051 36.000 21.07 21.07 33.39 3.58
4436 4598 3.650281 TGTCATCACTATGCCATTGGT 57.350 42.857 4.26 0.00 32.76 3.67
4460 4622 7.064371 GCACCATTATAACATGCAGAGATAGAG 59.936 40.741 10.90 0.00 36.30 2.43
4471 4633 5.105392 ACCAAACAGGCACCATTATAACATG 60.105 40.000 0.00 0.00 43.14 3.21
4503 4665 7.272037 TCACTCCTTCAACATTAAAGGTTTC 57.728 36.000 1.41 0.00 42.28 2.78
4534 4696 8.028938 GCACTGTATCAACTTTGGTTAAATGAT 58.971 33.333 0.00 0.00 32.86 2.45
4536 4698 7.114811 GTGCACTGTATCAACTTTGGTTAAATG 59.885 37.037 10.32 0.00 33.88 2.32
4538 4700 6.460399 GGTGCACTGTATCAACTTTGGTTAAA 60.460 38.462 17.98 0.00 33.88 1.52
4539 4701 5.009210 GGTGCACTGTATCAACTTTGGTTAA 59.991 40.000 17.98 0.00 33.88 2.01
4542 4704 2.884639 GGTGCACTGTATCAACTTTGGT 59.115 45.455 17.98 0.00 0.00 3.67
4543 4705 2.884012 TGGTGCACTGTATCAACTTTGG 59.116 45.455 17.98 0.00 0.00 3.28
4544 4706 3.304659 GGTGGTGCACTGTATCAACTTTG 60.305 47.826 17.98 0.00 34.40 2.77
4548 4710 1.165270 GGGTGGTGCACTGTATCAAC 58.835 55.000 17.98 8.20 34.40 3.18
4580 4742 1.651240 CCCCATTCGCTCAGCAGTTG 61.651 60.000 0.00 0.00 0.00 3.16
4681 4843 3.005791 GCACTTGCAGTTCCCTACATTTT 59.994 43.478 0.00 0.00 41.59 1.82
4800 4962 5.163622 CGCCAATCTTATGAACATTTCCAGT 60.164 40.000 0.00 0.00 0.00 4.00
4805 4967 6.208644 GCATACGCCAATCTTATGAACATTT 58.791 36.000 0.00 0.00 30.80 2.32
4854 5016 3.007723 AGGACATGGTAGATGCATAGCAG 59.992 47.826 0.00 0.00 43.65 4.24
4866 5028 4.406648 CATGTAGCAGAAGGACATGGTA 57.593 45.455 0.00 0.00 44.34 3.25
4887 5049 0.034089 AGGAGCAGGTAAATGGGCAC 60.034 55.000 0.00 0.00 0.00 5.01
4900 5062 4.227300 ACAGAACCAACCATAATAGGAGCA 59.773 41.667 0.00 0.00 0.00 4.26
4907 5069 4.657814 AGGTCACAGAACCAACCATAAT 57.342 40.909 0.00 0.00 42.12 1.28
4952 5114 3.438781 CCGGTCAATTTGCAAAGCTAGTA 59.561 43.478 18.19 0.00 0.00 1.82
4972 5134 3.101209 CATGTTGGCCGTGATCCG 58.899 61.111 0.00 0.00 31.20 4.18
5071 5233 0.535102 CCCTCACAGGTCACAACACC 60.535 60.000 0.00 0.00 36.58 4.16
5072 5234 1.166531 GCCCTCACAGGTCACAACAC 61.167 60.000 0.00 0.00 31.93 3.32
5101 5263 1.884579 CTGCAATTGCTCTCCTGTTGT 59.115 47.619 29.37 0.00 42.66 3.32
5163 5325 1.488812 ACTGCACTTGGGACTGTAACA 59.511 47.619 0.00 0.00 0.00 2.41
5169 5331 1.958288 ATCCTACTGCACTTGGGACT 58.042 50.000 0.00 0.00 0.00 3.85
5243 5405 6.311200 GTCATGTTGTTGCAAGAAAGACTTTT 59.689 34.615 20.79 0.00 36.61 2.27
5257 5419 5.644902 TTACGTGTGTAGTCATGTTGTTG 57.355 39.130 0.00 0.00 38.35 3.33
5266 5428 5.515626 CCATAGCTTCTTTACGTGTGTAGTC 59.484 44.000 0.00 0.00 0.00 2.59
5275 5437 3.248602 GGTCATGCCATAGCTTCTTTACG 59.751 47.826 0.00 0.00 40.80 3.18
5384 5552 6.187727 TCTAGTTCAAATTGGACCTTCTGT 57.812 37.500 0.00 0.00 0.00 3.41
5387 5555 5.106118 GGCTTCTAGTTCAAATTGGACCTTC 60.106 44.000 0.00 0.00 0.00 3.46
5414 5582 6.016610 TGTGCTAAGGTACAAGAATTTTGGTC 60.017 38.462 0.00 0.00 35.26 4.02
5415 5583 5.830991 TGTGCTAAGGTACAAGAATTTTGGT 59.169 36.000 0.00 0.00 35.26 3.67
5451 5619 5.576447 TGTTTCAGAGTTTCTTGTTTCCC 57.424 39.130 0.00 0.00 0.00 3.97
5502 5670 8.966868 TCCTGGAGTTAAAAATAACATGAATCC 58.033 33.333 0.00 0.00 32.63 3.01
5509 5677 7.650104 CGCTTTTTCCTGGAGTTAAAAATAACA 59.350 33.333 0.00 0.00 33.13 2.41
5535 5703 8.383318 ACAGTAAGCATATGAAATATCACCAC 57.617 34.615 6.97 0.00 37.44 4.16
5539 5707 8.344831 GTGCAACAGTAAGCATATGAAATATCA 58.655 33.333 6.97 0.00 43.44 2.15
5632 5800 4.201950 GCCAACGAATCACTGATAATGCTT 60.202 41.667 0.00 0.00 0.00 3.91
5788 6007 6.258287 CCTGTGATTCTTGATTGACAGAGATC 59.742 42.308 11.61 0.00 33.49 2.75
6074 6295 5.183530 TCACCCAGTGATTTCTTGATGAT 57.816 39.130 0.00 0.00 37.67 2.45
6076 6297 4.763793 ACTTCACCCAGTGATTTCTTGATG 59.236 41.667 0.00 0.00 42.40 3.07
6101 6322 3.119388 TGCCTTAATGATGTTGCTTGCTC 60.119 43.478 0.00 0.00 0.00 4.26
6126 6347 7.656412 TGAAATGTTAGAACTTAAGCATGCAA 58.344 30.769 21.98 5.27 0.00 4.08
6146 6367 7.043565 GGTCCTGCAAAATGTAATGATGAAAT 58.956 34.615 0.00 0.00 0.00 2.17
6223 6444 3.156288 ACAAGAAAAACTAGGAGCCCC 57.844 47.619 0.00 0.00 0.00 5.80
6382 6606 0.905357 ACAGGCTACCTTCGCTTCAT 59.095 50.000 0.00 0.00 0.00 2.57
6545 6770 2.617308 TGACGCCCGTGTTAATCAAAAA 59.383 40.909 0.00 0.00 0.00 1.94
6549 6774 1.647346 GATGACGCCCGTGTTAATCA 58.353 50.000 0.00 0.00 0.00 2.57
6567 6792 1.580066 AATGAAATGGAGCCCGGGGA 61.580 55.000 25.28 0.00 0.00 4.81
6630 6857 1.979155 CTCTGTCCGGTGGCTGAGA 60.979 63.158 17.85 5.88 34.11 3.27
6632 6859 1.305297 ATCTCTGTCCGGTGGCTGA 60.305 57.895 0.00 2.30 0.00 4.26
6667 6894 2.632377 AGAATCCCATGCTACGTTGTG 58.368 47.619 0.00 0.00 0.00 3.33
6698 9647 2.039879 ACGTGGGAAAAGCTTACTGGAT 59.960 45.455 0.00 0.00 0.00 3.41
6701 9650 2.218603 ACACGTGGGAAAAGCTTACTG 58.781 47.619 21.57 0.00 0.00 2.74
6706 9655 0.535102 CCTGACACGTGGGAAAAGCT 60.535 55.000 21.57 0.00 0.00 3.74
6716 9667 1.762957 CCATCTATTCCCCTGACACGT 59.237 52.381 0.00 0.00 0.00 4.49
6718 9669 2.370189 CTCCCATCTATTCCCCTGACAC 59.630 54.545 0.00 0.00 0.00 3.67
6722 9673 2.107204 CAACCTCCCATCTATTCCCCTG 59.893 54.545 0.00 0.00 0.00 4.45
6725 9676 2.136026 ACCAACCTCCCATCTATTCCC 58.864 52.381 0.00 0.00 0.00 3.97
6735 9686 2.102578 CATCAATTCCACCAACCTCCC 58.897 52.381 0.00 0.00 0.00 4.30
6736 9687 3.085952 TCATCAATTCCACCAACCTCC 57.914 47.619 0.00 0.00 0.00 4.30
6740 9691 5.750067 GCAATACATCATCAATTCCACCAAC 59.250 40.000 0.00 0.00 0.00 3.77
6862 10050 0.941542 GCTACCGTTGTGACTGCAAA 59.058 50.000 0.00 0.00 0.00 3.68
6863 10051 1.218875 CGCTACCGTTGTGACTGCAA 61.219 55.000 0.00 0.00 0.00 4.08
6928 10127 2.891191 TGACTTTGGGGGTATGTTCC 57.109 50.000 0.00 0.00 0.00 3.62
6966 10182 3.025322 TCCACTCCAACCACAACATTT 57.975 42.857 0.00 0.00 0.00 2.32
6967 10183 2.746279 TCCACTCCAACCACAACATT 57.254 45.000 0.00 0.00 0.00 2.71
6969 10185 1.283613 ACTTCCACTCCAACCACAACA 59.716 47.619 0.00 0.00 0.00 3.33
6977 10193 2.168496 CCTCGTAGACTTCCACTCCAA 58.832 52.381 0.00 0.00 0.00 3.53
7010 10226 3.799755 GCACAAAGGGCTACCGCG 61.800 66.667 0.00 0.00 43.47 6.46
7069 10289 1.538687 CGTCCCTCCACGGTTACCTT 61.539 60.000 0.00 0.00 36.07 3.50
7116 10337 1.669440 GGCGACTACCTTGACACCA 59.331 57.895 0.00 0.00 0.00 4.17
7123 10344 3.003113 GCTCCACGGCGACTACCTT 62.003 63.158 16.62 0.00 0.00 3.50
7162 10384 1.839747 ACTGCACCCCCGACTAACA 60.840 57.895 0.00 0.00 0.00 2.41
7216 10455 3.283684 CTTGGCAAACCCGACGCA 61.284 61.111 0.00 0.00 35.87 5.24
7238 10477 0.314302 CTTCTTCCACGACGTGTCCT 59.686 55.000 25.18 0.00 0.00 3.85
7253 10492 3.036084 CAACGACGCGTGCCTTCT 61.036 61.111 20.70 0.00 39.99 2.85
7291 10531 2.231478 TCAACATCGACCTCTTCTGTCC 59.769 50.000 0.00 0.00 0.00 4.02
7298 10539 2.167281 CACCTCATCAACATCGACCTCT 59.833 50.000 0.00 0.00 0.00 3.69
7301 10542 2.271800 GACACCTCATCAACATCGACC 58.728 52.381 0.00 0.00 0.00 4.79
7364 10605 2.258897 TGGCAACATCGACGCGTA 59.741 55.556 13.97 0.00 46.17 4.42
7393 10634 1.297664 CTCGTACTGGTCCCTCTACG 58.702 60.000 6.91 6.91 34.59 3.51
7394 10635 2.416680 ACTCGTACTGGTCCCTCTAC 57.583 55.000 0.00 0.00 0.00 2.59
7395 10636 2.040813 ACAACTCGTACTGGTCCCTCTA 59.959 50.000 0.00 0.00 0.00 2.43
7396 10637 1.203025 ACAACTCGTACTGGTCCCTCT 60.203 52.381 0.00 0.00 0.00 3.69
7431 10676 1.476007 ATCGGGTCATCTGCTAGCCC 61.476 60.000 13.29 4.45 36.08 5.19
7434 10679 1.335415 CGTCATCGGGTCATCTGCTAG 60.335 57.143 0.00 0.00 0.00 3.42
7458 10716 2.431771 CACACCGATTGGCGTCGA 60.432 61.111 12.80 0.00 44.06 4.20
7461 10719 4.715523 CCCCACACCGATTGGCGT 62.716 66.667 0.00 0.00 39.70 5.68
7481 10748 1.939381 GCGGGCGATATCTGCACATTA 60.939 52.381 17.73 0.00 34.71 1.90
7484 10751 2.280119 GCGGGCGATATCTGCACA 60.280 61.111 17.73 0.00 34.71 4.57
7488 10755 2.734723 CACCGCGGGCGATATCTG 60.735 66.667 31.76 12.25 42.83 2.90
7489 10756 3.991051 CCACCGCGGGCGATATCT 61.991 66.667 31.76 1.49 42.83 1.98
7527 10794 1.801332 CGTCGTCGTCATCTTCCCT 59.199 57.895 0.00 0.00 0.00 4.20
7590 10859 3.124921 GGTTCCGCCGACCACATG 61.125 66.667 0.00 0.00 37.14 3.21
7655 10973 1.292223 GCCTACTTCGAGCACCACA 59.708 57.895 0.00 0.00 0.00 4.17
7657 10975 0.037326 CTTGCCTACTTCGAGCACCA 60.037 55.000 0.00 0.00 35.96 4.17
7674 10992 1.170290 CGTTGCCGGGTTTCTTCCTT 61.170 55.000 2.18 0.00 0.00 3.36
7736 11054 1.220749 GGATGCACCAGAACGCCTA 59.779 57.895 0.00 0.00 38.79 3.93
7742 11060 0.249120 CTACGTGGGATGCACCAGAA 59.751 55.000 0.00 0.00 42.20 3.02
7744 11062 0.249120 TTCTACGTGGGATGCACCAG 59.751 55.000 0.00 0.00 42.20 4.00
7745 11063 0.249120 CTTCTACGTGGGATGCACCA 59.751 55.000 0.00 0.00 41.20 4.17
7753 11071 1.513586 GCGTCGACTTCTACGTGGG 60.514 63.158 14.70 0.00 41.10 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.