Multiple sequence alignment - TraesCS3B01G284800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G284800 chr3B 100.000 3791 0 0 1 3791 456325920 456322130 0.000000e+00 7001.0
1 TraesCS3B01G284800 chr3B 91.382 1845 68 28 929 2763 463203000 463204763 0.000000e+00 2442.0
2 TraesCS3B01G284800 chr3B 90.000 330 16 11 3156 3480 463211323 463211640 9.800000e-111 411.0
3 TraesCS3B01G284800 chr3B 93.361 241 8 6 2767 3001 463210830 463211068 2.170000e-92 350.0
4 TraesCS3B01G284800 chr3B 89.669 242 10 7 698 925 463201321 463201561 1.030000e-75 294.0
5 TraesCS3B01G284800 chr3B 93.820 178 8 1 164 338 463200946 463201123 8.070000e-67 265.0
6 TraesCS3B01G284800 chr3B 92.350 183 9 5 490 667 709400401 709400219 4.860000e-64 255.0
7 TraesCS3B01G284800 chr3B 92.737 179 9 3 491 666 817585439 817585616 4.860000e-64 255.0
8 TraesCS3B01G284800 chr3B 91.758 182 11 3 490 667 236494726 236494907 2.260000e-62 250.0
9 TraesCS3B01G284800 chr3B 93.333 165 2 3 1 165 463200676 463200831 6.330000e-58 235.0
10 TraesCS3B01G284800 chr3B 95.489 133 2 4 3472 3603 732440945 732441074 3.840000e-50 209.0
11 TraesCS3B01G284800 chr3B 89.080 174 7 4 3012 3173 463211132 463211305 4.960000e-49 206.0
12 TraesCS3B01G284800 chr3B 85.714 168 14 7 323 482 463201136 463201301 6.510000e-38 169.0
13 TraesCS3B01G284800 chr3D 91.794 2547 87 36 690 3173 355320527 355318040 0.000000e+00 3434.0
14 TraesCS3B01G284800 chr3D 90.541 444 19 8 1 440 355320979 355320555 1.980000e-157 566.0
15 TraesCS3B01G284800 chr3D 87.611 339 10 6 3170 3480 355318007 355317673 7.740000e-97 364.0
16 TraesCS3B01G284800 chr3D 91.729 133 7 4 3479 3609 46259479 46259349 8.370000e-42 182.0
17 TraesCS3B01G284800 chr3A 91.751 1782 71 31 928 2700 474210712 474208998 0.000000e+00 2407.0
18 TraesCS3B01G284800 chr3A 89.571 489 23 10 1 480 474211428 474210959 2.520000e-166 595.0
19 TraesCS3B01G284800 chr3A 87.891 512 21 8 2691 3170 474208979 474208477 7.110000e-157 564.0
20 TraesCS3B01G284800 chr3A 83.465 254 13 11 3189 3428 474208411 474208173 3.840000e-50 209.0
21 TraesCS3B01G284800 chr3A 89.362 141 14 1 3477 3617 619645982 619645843 3.890000e-40 176.0
22 TraesCS3B01G284800 chr3A 90.756 119 4 4 813 925 474210867 474210750 6.560000e-33 152.0
23 TraesCS3B01G284800 chr3A 94.872 78 3 1 690 766 474210951 474210874 1.850000e-23 121.0
24 TraesCS3B01G284800 chr3A 95.161 62 3 0 3419 3480 474208133 474208072 8.670000e-17 99.0
25 TraesCS3B01G284800 chr7D 89.815 216 21 1 1173 1388 234656763 234656977 3.730000e-70 276.0
26 TraesCS3B01G284800 chr7D 89.404 151 15 1 1469 1619 234656974 234657123 5.000000e-44 189.0
27 TraesCS3B01G284800 chr1B 91.371 197 17 0 2056 2252 376072616 376072812 1.740000e-68 270.0
28 TraesCS3B01G284800 chr7B 93.855 179 8 3 491 666 117022170 117022348 2.250000e-67 267.0
29 TraesCS3B01G284800 chr1D 90.863 197 18 0 2056 2252 277094382 277094578 8.070000e-67 265.0
30 TraesCS3B01G284800 chr2B 92.857 182 9 4 490 667 64891594 64891775 1.040000e-65 261.0
31 TraesCS3B01G284800 chr2B 91.935 186 11 3 485 667 170394655 170394471 1.350000e-64 257.0
32 TraesCS3B01G284800 chr2B 91.351 185 13 3 491 672 494876684 494876868 2.260000e-62 250.0
33 TraesCS3B01G284800 chr1A 90.355 197 19 0 2056 2252 349360255 349360451 3.760000e-65 259.0
34 TraesCS3B01G284800 chr5B 93.182 176 10 2 493 666 532890468 532890293 1.350000e-64 257.0
35 TraesCS3B01G284800 chr5B 94.355 124 6 1 3478 3601 79817993 79817871 5.000000e-44 189.0
36 TraesCS3B01G284800 chr4B 92.179 179 12 2 490 666 666696784 666696962 6.290000e-63 252.0
37 TraesCS3B01G284800 chr6D 95.161 124 5 1 3473 3596 430998586 430998464 1.070000e-45 195.0
38 TraesCS3B01G284800 chr6B 94.444 126 6 1 3478 3603 267021891 267021767 3.860000e-45 193.0
39 TraesCS3B01G284800 chr6B 93.750 128 6 2 3473 3600 128924765 128924890 1.390000e-44 191.0
40 TraesCS3B01G284800 chr4D 95.082 122 5 1 3475 3596 234179262 234179142 1.390000e-44 191.0
41 TraesCS3B01G284800 chr5D 93.701 127 6 2 3474 3600 420228162 420228286 5.000000e-44 189.0
42 TraesCS3B01G284800 chr2D 87.234 47 6 0 2102 2148 477238231 477238277 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G284800 chr3B 456322130 456325920 3790 True 7001.000000 7001 100.000000 1 3791 1 chr3B.!!$R1 3790
1 TraesCS3B01G284800 chr3B 463200676 463204763 4087 False 681.000000 2442 90.783600 1 2763 5 chr3B.!!$F4 2762
2 TraesCS3B01G284800 chr3B 463210830 463211640 810 False 322.333333 411 90.813667 2767 3480 3 chr3B.!!$F5 713
3 TraesCS3B01G284800 chr3D 355317673 355320979 3306 True 1454.666667 3434 89.982000 1 3480 3 chr3D.!!$R2 3479
4 TraesCS3B01G284800 chr3A 474208072 474211428 3356 True 592.428571 2407 90.495286 1 3480 7 chr3A.!!$R2 3479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 653 0.036765 TTCCCACGTACAGCACCATC 60.037 55.000 0.0 0.0 0.00 3.51 F
610 775 0.251916 CCCGCTCACCTATTGACCAA 59.748 55.000 0.0 0.0 0.00 3.67 F
687 852 0.530650 ACCATCGCATCGTGTGGATC 60.531 55.000 15.8 0.0 37.25 3.36 F
2027 3665 1.005215 ACCATAAGCTTCAGCAAGGCT 59.995 47.619 0.0 0.0 45.16 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1707 3345 0.984230 TTGCAAGGGAGGAAGACGAT 59.016 50.000 0.00 0.0 0.00 3.73 R
2328 3975 1.003355 CCACCTCGTCCTGCATTGT 60.003 57.895 0.00 0.0 0.00 2.71 R
2651 4316 0.461516 ATGCAGTCACGAGGAGCATG 60.462 55.000 0.00 0.0 43.60 4.06 R
3575 5499 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.0 44.66 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 35 2.673200 GGGCATGGTCCAGAGCAGA 61.673 63.158 17.92 0.00 42.52 4.26
31 36 1.153208 GGCATGGTCCAGAGCAGAG 60.153 63.158 17.92 2.27 42.52 3.35
32 37 1.818785 GCATGGTCCAGAGCAGAGC 60.819 63.158 12.85 8.22 42.52 4.09
33 38 1.600638 CATGGTCCAGAGCAGAGCA 59.399 57.895 5.70 0.00 45.03 4.26
34 39 0.462225 CATGGTCCAGAGCAGAGCAG 60.462 60.000 5.70 0.00 44.25 4.24
48 53 1.574702 GAGCAGTTGCCAACGTACCC 61.575 60.000 1.20 0.00 43.38 3.69
54 59 1.532437 GTTGCCAACGTACCCAACTAC 59.468 52.381 14.25 0.00 35.80 2.73
126 131 0.671781 CGTCTTCAGCTCCTGGGTTG 60.672 60.000 0.00 0.00 31.51 3.77
127 132 0.322008 GTCTTCAGCTCCTGGGTTGG 60.322 60.000 0.00 0.00 31.51 3.77
128 133 0.768221 TCTTCAGCTCCTGGGTTGGT 60.768 55.000 0.00 0.00 31.51 3.67
129 134 0.111253 CTTCAGCTCCTGGGTTGGTT 59.889 55.000 0.00 0.00 31.51 3.67
141 146 1.965643 GGGTTGGTTAACTTGGGAACC 59.034 52.381 5.42 9.70 44.60 3.62
142 147 2.425247 GGGTTGGTTAACTTGGGAACCT 60.425 50.000 5.42 0.00 44.63 3.50
143 148 3.181430 GGGTTGGTTAACTTGGGAACCTA 60.181 47.826 5.42 0.00 44.63 3.08
281 405 1.079405 CGGTTTGCGCCCTCTTCTA 60.079 57.895 4.18 0.00 0.00 2.10
292 416 1.063266 CCCTCTTCTACCCAGCTCTCT 60.063 57.143 0.00 0.00 0.00 3.10
352 504 3.548587 CGTCCGTATATACACCGAACTG 58.451 50.000 13.22 0.00 0.00 3.16
353 505 3.303406 GTCCGTATATACACCGAACTGC 58.697 50.000 13.22 0.00 0.00 4.40
355 507 3.251729 TCCGTATATACACCGAACTGCTC 59.748 47.826 13.22 0.00 0.00 4.26
356 508 3.004002 CCGTATATACACCGAACTGCTCA 59.996 47.826 13.22 0.00 0.00 4.26
360 512 5.796350 ATATACACCGAACTGCTCAAAAC 57.204 39.130 0.00 0.00 0.00 2.43
362 514 0.041312 CACCGAACTGCTCAAAACGG 60.041 55.000 0.00 0.00 44.77 4.44
364 516 0.661020 CCGAACTGCTCAAAACGGTT 59.339 50.000 0.00 0.00 39.31 4.44
369 521 2.851195 ACTGCTCAAAACGGTTCATCT 58.149 42.857 0.00 0.00 0.00 2.90
375 527 4.391830 GCTCAAAACGGTTCATCTGATGTA 59.608 41.667 16.66 5.21 0.00 2.29
377 529 5.547465 TCAAAACGGTTCATCTGATGTAGT 58.453 37.500 16.66 9.95 0.00 2.73
386 538 6.147164 GGTTCATCTGATGTAGTCGAACAAAA 59.853 38.462 16.66 0.00 38.87 2.44
388 540 5.869344 TCATCTGATGTAGTCGAACAAAAGG 59.131 40.000 16.66 0.00 32.02 3.11
389 541 5.209818 TCTGATGTAGTCGAACAAAAGGT 57.790 39.130 0.00 0.00 32.02 3.50
390 542 6.335471 TCTGATGTAGTCGAACAAAAGGTA 57.665 37.500 0.00 0.00 32.02 3.08
391 543 6.154445 TCTGATGTAGTCGAACAAAAGGTAC 58.846 40.000 0.00 0.00 32.02 3.34
392 544 4.919168 TGATGTAGTCGAACAAAAGGTACG 59.081 41.667 0.00 0.00 32.02 3.67
394 546 2.159327 AGTCGAACAAAAGGTACGGG 57.841 50.000 0.00 0.00 0.00 5.28
408 560 0.534877 TACGGGGATGCATGCATGTC 60.535 55.000 36.73 25.74 36.70 3.06
445 610 3.701542 TCTCGGCATCTAGAACAGATTGT 59.298 43.478 0.00 0.00 41.49 2.71
473 638 0.398098 TCACCCTACTCCCGATTCCC 60.398 60.000 0.00 0.00 0.00 3.97
476 641 1.740285 CCTACTCCCGATTCCCACG 59.260 63.158 0.00 0.00 0.00 4.94
482 647 1.520787 CCCGATTCCCACGTACAGC 60.521 63.158 0.00 0.00 0.00 4.40
484 649 1.082117 CCGATTCCCACGTACAGCAC 61.082 60.000 0.00 0.00 0.00 4.40
485 650 1.082117 CGATTCCCACGTACAGCACC 61.082 60.000 0.00 0.00 0.00 5.01
487 652 0.618458 ATTCCCACGTACAGCACCAT 59.382 50.000 0.00 0.00 0.00 3.55
488 653 0.036765 TTCCCACGTACAGCACCATC 60.037 55.000 0.00 0.00 0.00 3.51
489 654 1.809619 CCCACGTACAGCACCATCG 60.810 63.158 0.00 0.00 0.00 3.84
490 655 2.452813 CCACGTACAGCACCATCGC 61.453 63.158 0.00 0.00 0.00 4.58
491 656 1.736282 CACGTACAGCACCATCGCA 60.736 57.895 0.00 0.00 0.00 5.10
492 657 1.005512 ACGTACAGCACCATCGCAA 60.006 52.632 0.00 0.00 0.00 4.85
493 658 0.601576 ACGTACAGCACCATCGCAAA 60.602 50.000 0.00 0.00 0.00 3.68
494 659 0.515127 CGTACAGCACCATCGCAAAA 59.485 50.000 0.00 0.00 0.00 2.44
495 660 1.069568 CGTACAGCACCATCGCAAAAA 60.070 47.619 0.00 0.00 0.00 1.94
496 661 2.414029 CGTACAGCACCATCGCAAAAAT 60.414 45.455 0.00 0.00 0.00 1.82
497 662 2.068837 ACAGCACCATCGCAAAAATG 57.931 45.000 0.00 0.00 0.00 2.32
498 663 0.717224 CAGCACCATCGCAAAAATGC 59.283 50.000 0.00 0.00 0.00 3.56
499 664 0.604578 AGCACCATCGCAAAAATGCT 59.395 45.000 0.00 0.00 38.55 3.79
500 665 1.818060 AGCACCATCGCAAAAATGCTA 59.182 42.857 0.28 0.00 41.45 3.49
501 666 2.428171 AGCACCATCGCAAAAATGCTAT 59.572 40.909 0.28 0.00 41.45 2.97
502 667 3.631686 AGCACCATCGCAAAAATGCTATA 59.368 39.130 0.28 0.00 41.45 1.31
503 668 3.730715 GCACCATCGCAAAAATGCTATAC 59.269 43.478 0.00 0.00 0.00 1.47
504 669 4.733230 GCACCATCGCAAAAATGCTATACA 60.733 41.667 0.00 0.00 0.00 2.29
505 670 5.522456 CACCATCGCAAAAATGCTATACAT 58.478 37.500 0.00 0.00 42.30 2.29
506 671 6.667370 CACCATCGCAAAAATGCTATACATA 58.333 36.000 0.00 0.00 38.34 2.29
507 672 6.578545 CACCATCGCAAAAATGCTATACATAC 59.421 38.462 0.00 0.00 38.34 2.39
508 673 6.262049 ACCATCGCAAAAATGCTATACATACA 59.738 34.615 0.00 0.00 38.34 2.29
509 674 7.138081 CCATCGCAAAAATGCTATACATACAA 58.862 34.615 0.00 0.00 38.34 2.41
510 675 7.647318 CCATCGCAAAAATGCTATACATACAAA 59.353 33.333 0.00 0.00 38.34 2.83
511 676 9.018716 CATCGCAAAAATGCTATACATACAAAA 57.981 29.630 0.00 0.00 38.34 2.44
512 677 8.972262 TCGCAAAAATGCTATACATACAAAAA 57.028 26.923 0.00 0.00 38.34 1.94
513 678 8.855279 TCGCAAAAATGCTATACATACAAAAAC 58.145 29.630 0.00 0.00 38.34 2.43
514 679 8.859156 CGCAAAAATGCTATACATACAAAAACT 58.141 29.630 0.00 0.00 38.34 2.66
520 685 9.982291 AATGCTATACATACAAAAACTTACACG 57.018 29.630 0.00 0.00 38.34 4.49
521 686 7.457868 TGCTATACATACAAAAACTTACACGC 58.542 34.615 0.00 0.00 0.00 5.34
522 687 7.332430 TGCTATACATACAAAAACTTACACGCT 59.668 33.333 0.00 0.00 0.00 5.07
523 688 8.173130 GCTATACATACAAAAACTTACACGCTT 58.827 33.333 0.00 0.00 0.00 4.68
527 692 8.551122 ACATACAAAAACTTACACGCTTTTAC 57.449 30.769 0.00 0.00 0.00 2.01
528 693 8.182881 ACATACAAAAACTTACACGCTTTTACA 58.817 29.630 0.00 0.00 0.00 2.41
529 694 9.176181 CATACAAAAACTTACACGCTTTTACAT 57.824 29.630 0.00 0.00 0.00 2.29
530 695 7.444558 ACAAAAACTTACACGCTTTTACATG 57.555 32.000 0.00 0.00 0.00 3.21
531 696 6.020201 ACAAAAACTTACACGCTTTTACATGC 60.020 34.615 0.00 0.00 0.00 4.06
532 697 5.432885 AAACTTACACGCTTTTACATGCT 57.567 34.783 0.00 0.00 0.00 3.79
533 698 4.663636 ACTTACACGCTTTTACATGCTC 57.336 40.909 0.00 0.00 0.00 4.26
534 699 3.435671 ACTTACACGCTTTTACATGCTCC 59.564 43.478 0.00 0.00 0.00 4.70
535 700 2.185004 ACACGCTTTTACATGCTCCT 57.815 45.000 0.00 0.00 0.00 3.69
536 701 2.504367 ACACGCTTTTACATGCTCCTT 58.496 42.857 0.00 0.00 0.00 3.36
537 702 2.884639 ACACGCTTTTACATGCTCCTTT 59.115 40.909 0.00 0.00 0.00 3.11
538 703 3.058224 ACACGCTTTTACATGCTCCTTTC 60.058 43.478 0.00 0.00 0.00 2.62
539 704 3.058293 CACGCTTTTACATGCTCCTTTCA 60.058 43.478 0.00 0.00 0.00 2.69
540 705 3.758554 ACGCTTTTACATGCTCCTTTCAT 59.241 39.130 0.00 0.00 0.00 2.57
541 706 4.142600 ACGCTTTTACATGCTCCTTTCATC 60.143 41.667 0.00 0.00 0.00 2.92
542 707 4.095483 CGCTTTTACATGCTCCTTTCATCT 59.905 41.667 0.00 0.00 0.00 2.90
543 708 5.294306 CGCTTTTACATGCTCCTTTCATCTA 59.706 40.000 0.00 0.00 0.00 1.98
544 709 6.183360 CGCTTTTACATGCTCCTTTCATCTAA 60.183 38.462 0.00 0.00 0.00 2.10
545 710 6.969473 GCTTTTACATGCTCCTTTCATCTAAC 59.031 38.462 0.00 0.00 0.00 2.34
546 711 7.362056 GCTTTTACATGCTCCTTTCATCTAACA 60.362 37.037 0.00 0.00 0.00 2.41
547 712 7.994425 TTTACATGCTCCTTTCATCTAACAA 57.006 32.000 0.00 0.00 0.00 2.83
548 713 8.579850 TTTACATGCTCCTTTCATCTAACAAT 57.420 30.769 0.00 0.00 0.00 2.71
549 714 6.690194 ACATGCTCCTTTCATCTAACAATC 57.310 37.500 0.00 0.00 0.00 2.67
550 715 6.182627 ACATGCTCCTTTCATCTAACAATCA 58.817 36.000 0.00 0.00 0.00 2.57
551 716 6.660521 ACATGCTCCTTTCATCTAACAATCAA 59.339 34.615 0.00 0.00 0.00 2.57
552 717 7.341256 ACATGCTCCTTTCATCTAACAATCAAT 59.659 33.333 0.00 0.00 0.00 2.57
553 718 7.325660 TGCTCCTTTCATCTAACAATCAATC 57.674 36.000 0.00 0.00 0.00 2.67
554 719 6.885918 TGCTCCTTTCATCTAACAATCAATCA 59.114 34.615 0.00 0.00 0.00 2.57
555 720 7.148188 TGCTCCTTTCATCTAACAATCAATCAC 60.148 37.037 0.00 0.00 0.00 3.06
556 721 7.148188 GCTCCTTTCATCTAACAATCAATCACA 60.148 37.037 0.00 0.00 0.00 3.58
557 722 8.634335 TCCTTTCATCTAACAATCAATCACAA 57.366 30.769 0.00 0.00 0.00 3.33
558 723 9.076781 TCCTTTCATCTAACAATCAATCACAAA 57.923 29.630 0.00 0.00 0.00 2.83
559 724 9.132521 CCTTTCATCTAACAATCAATCACAAAC 57.867 33.333 0.00 0.00 0.00 2.93
560 725 9.132521 CTTTCATCTAACAATCAATCACAAACC 57.867 33.333 0.00 0.00 0.00 3.27
561 726 8.408043 TTCATCTAACAATCAATCACAAACCT 57.592 30.769 0.00 0.00 0.00 3.50
562 727 8.044060 TCATCTAACAATCAATCACAAACCTC 57.956 34.615 0.00 0.00 0.00 3.85
563 728 7.884877 TCATCTAACAATCAATCACAAACCTCT 59.115 33.333 0.00 0.00 0.00 3.69
564 729 7.672983 TCTAACAATCAATCACAAACCTCTC 57.327 36.000 0.00 0.00 0.00 3.20
565 730 5.712152 AACAATCAATCACAAACCTCTCC 57.288 39.130 0.00 0.00 0.00 3.71
566 731 4.990526 ACAATCAATCACAAACCTCTCCT 58.009 39.130 0.00 0.00 0.00 3.69
567 732 5.006386 ACAATCAATCACAAACCTCTCCTC 58.994 41.667 0.00 0.00 0.00 3.71
568 733 3.703001 TCAATCACAAACCTCTCCTCC 57.297 47.619 0.00 0.00 0.00 4.30
569 734 2.305927 TCAATCACAAACCTCTCCTCCC 59.694 50.000 0.00 0.00 0.00 4.30
570 735 2.307098 CAATCACAAACCTCTCCTCCCT 59.693 50.000 0.00 0.00 0.00 4.20
571 736 1.352083 TCACAAACCTCTCCTCCCTG 58.648 55.000 0.00 0.00 0.00 4.45
572 737 1.132849 TCACAAACCTCTCCTCCCTGA 60.133 52.381 0.00 0.00 0.00 3.86
573 738 1.912043 CACAAACCTCTCCTCCCTGAT 59.088 52.381 0.00 0.00 0.00 2.90
574 739 2.307098 CACAAACCTCTCCTCCCTGATT 59.693 50.000 0.00 0.00 0.00 2.57
575 740 2.989571 ACAAACCTCTCCTCCCTGATTT 59.010 45.455 0.00 0.00 0.00 2.17
576 741 3.399305 ACAAACCTCTCCTCCCTGATTTT 59.601 43.478 0.00 0.00 0.00 1.82
577 742 4.013050 CAAACCTCTCCTCCCTGATTTTC 58.987 47.826 0.00 0.00 0.00 2.29
578 743 2.921221 ACCTCTCCTCCCTGATTTTCA 58.079 47.619 0.00 0.00 0.00 2.69
579 744 2.843113 ACCTCTCCTCCCTGATTTTCAG 59.157 50.000 0.00 0.00 43.91 3.02
589 754 2.350522 CTGATTTTCAGGAGTGGACCG 58.649 52.381 0.00 0.00 40.71 4.79
590 755 1.087501 GATTTTCAGGAGTGGACCGC 58.912 55.000 0.00 0.00 34.73 5.68
591 756 0.322546 ATTTTCAGGAGTGGACCGCC 60.323 55.000 0.08 0.00 34.73 6.13
592 757 2.406002 TTTTCAGGAGTGGACCGCCC 62.406 60.000 0.08 2.90 34.73 6.13
604 769 3.861797 CCGCCCCGCTCACCTATT 61.862 66.667 0.00 0.00 0.00 1.73
605 770 2.588877 CGCCCCGCTCACCTATTG 60.589 66.667 0.00 0.00 0.00 1.90
606 771 2.908015 GCCCCGCTCACCTATTGA 59.092 61.111 0.00 0.00 0.00 2.57
607 772 1.523938 GCCCCGCTCACCTATTGAC 60.524 63.158 0.00 0.00 0.00 3.18
608 773 1.146263 CCCCGCTCACCTATTGACC 59.854 63.158 0.00 0.00 0.00 4.02
609 774 1.622607 CCCCGCTCACCTATTGACCA 61.623 60.000 0.00 0.00 0.00 4.02
610 775 0.251916 CCCGCTCACCTATTGACCAA 59.748 55.000 0.00 0.00 0.00 3.67
611 776 1.134098 CCCGCTCACCTATTGACCAAT 60.134 52.381 0.64 0.64 34.93 3.16
612 777 2.213499 CCGCTCACCTATTGACCAATC 58.787 52.381 0.00 0.00 32.50 2.67
613 778 2.419990 CCGCTCACCTATTGACCAATCA 60.420 50.000 0.00 0.00 32.50 2.57
645 810 8.161699 ACCATCTTGTAAAAACTGTAAATCGT 57.838 30.769 0.00 0.00 0.00 3.73
646 811 8.626526 ACCATCTTGTAAAAACTGTAAATCGTT 58.373 29.630 0.00 0.00 0.00 3.85
647 812 9.458374 CCATCTTGTAAAAACTGTAAATCGTTT 57.542 29.630 0.00 0.00 35.04 3.60
652 817 8.750626 TGTAAAAACTGTAAATCGTTTGTACG 57.249 30.769 9.40 0.00 42.56 3.67
663 828 2.492001 CGTTTGTACGTGTAGCATTGC 58.508 47.619 0.00 0.00 42.72 3.56
664 829 2.723618 CGTTTGTACGTGTAGCATTGCC 60.724 50.000 4.70 0.00 42.72 4.52
665 830 1.072391 TTGTACGTGTAGCATTGCCG 58.928 50.000 4.70 4.23 0.00 5.69
666 831 0.738063 TGTACGTGTAGCATTGCCGG 60.738 55.000 4.70 0.00 0.00 6.13
667 832 1.812093 TACGTGTAGCATTGCCGGC 60.812 57.895 22.73 22.73 0.00 6.13
668 833 2.508586 TACGTGTAGCATTGCCGGCA 62.509 55.000 29.03 29.03 0.00 5.69
669 834 2.485122 GTGTAGCATTGCCGGCAC 59.515 61.111 32.95 19.07 0.00 5.01
670 835 2.749839 TGTAGCATTGCCGGCACC 60.750 61.111 32.95 20.55 0.00 5.01
671 836 2.749839 GTAGCATTGCCGGCACCA 60.750 61.111 32.95 17.67 0.00 4.17
672 837 2.120909 GTAGCATTGCCGGCACCAT 61.121 57.895 32.95 19.47 0.00 3.55
673 838 1.823470 TAGCATTGCCGGCACCATC 60.823 57.895 32.95 18.43 0.00 3.51
674 839 4.557605 GCATTGCCGGCACCATCG 62.558 66.667 32.95 16.72 0.00 3.84
675 840 4.557605 CATTGCCGGCACCATCGC 62.558 66.667 32.95 0.00 0.00 4.58
681 846 3.928769 CGGCACCATCGCATCGTG 61.929 66.667 0.00 0.00 0.00 4.35
682 847 2.819595 GGCACCATCGCATCGTGT 60.820 61.111 0.00 0.00 0.00 4.49
683 848 2.400798 GCACCATCGCATCGTGTG 59.599 61.111 0.00 0.00 0.00 3.82
684 849 3.092403 CACCATCGCATCGTGTGG 58.908 61.111 10.18 10.18 38.70 4.17
685 850 1.447663 CACCATCGCATCGTGTGGA 60.448 57.895 15.80 0.00 37.25 4.02
686 851 0.811219 CACCATCGCATCGTGTGGAT 60.811 55.000 15.80 3.31 37.25 3.41
687 852 0.530650 ACCATCGCATCGTGTGGATC 60.531 55.000 15.80 0.00 37.25 3.36
688 853 1.224069 CCATCGCATCGTGTGGATCC 61.224 60.000 4.20 4.20 36.45 3.36
692 857 1.148157 CGCATCGTGTGGATCCTGAC 61.148 60.000 14.23 8.41 31.28 3.51
872 1053 1.672356 GGCGCATCCACTCAACAGT 60.672 57.895 10.83 0.00 34.01 3.55
897 1082 5.163854 CCACAGCACAGTTATTACTTGTAGC 60.164 44.000 0.00 0.00 30.26 3.58
898 1083 5.639506 CACAGCACAGTTATTACTTGTAGCT 59.360 40.000 0.00 0.00 30.26 3.32
899 1084 6.147821 CACAGCACAGTTATTACTTGTAGCTT 59.852 38.462 0.00 0.00 30.26 3.74
900 1085 6.147821 ACAGCACAGTTATTACTTGTAGCTTG 59.852 38.462 0.00 0.00 30.26 4.01
901 1086 6.147821 CAGCACAGTTATTACTTGTAGCTTGT 59.852 38.462 0.00 0.00 30.26 3.16
902 1087 7.330946 CAGCACAGTTATTACTTGTAGCTTGTA 59.669 37.037 0.00 0.00 30.26 2.41
903 1088 7.545965 AGCACAGTTATTACTTGTAGCTTGTAG 59.454 37.037 0.00 0.00 30.26 2.74
925 1111 3.039011 ACTTGTAGTCCAGTGACCAACT 58.961 45.455 0.00 0.00 42.81 3.16
943 2565 7.032377 ACCAACTGAGAAAATCAACTTCTTC 57.968 36.000 0.00 0.00 37.52 2.87
977 2605 1.221523 TCCTCTGTCATATCCAGGGCT 59.778 52.381 0.00 0.00 0.00 5.19
1015 2647 5.054477 GCTCGGCTCTATATAAAACCACAA 58.946 41.667 0.00 0.00 0.00 3.33
1018 2650 6.646267 TCGGCTCTATATAAAACCACAAACT 58.354 36.000 0.00 0.00 0.00 2.66
1046 2679 2.185350 CAAGCCGACCGAGAGCAT 59.815 61.111 0.00 0.00 0.00 3.79
1050 2683 2.050895 CCGACCGAGAGCATAGCG 60.051 66.667 0.00 0.00 0.00 4.26
1051 2684 2.543802 CCGACCGAGAGCATAGCGA 61.544 63.158 0.00 0.00 0.00 4.93
1052 2685 1.369448 CGACCGAGAGCATAGCGAC 60.369 63.158 0.00 0.00 0.00 5.19
1053 2686 1.008309 GACCGAGAGCATAGCGACC 60.008 63.158 0.00 0.00 0.00 4.79
1054 2687 1.448922 GACCGAGAGCATAGCGACCT 61.449 60.000 0.00 0.00 0.00 3.85
1055 2688 1.038130 ACCGAGAGCATAGCGACCTT 61.038 55.000 0.00 0.00 0.00 3.50
1334 2972 3.075005 TACTGGCAGGAGTCCCGC 61.075 66.667 20.34 9.05 37.58 6.13
1508 3146 3.580193 GACTACGCGCTCCGGCTA 61.580 66.667 5.73 0.00 42.52 3.93
1564 3202 2.094906 CGTCCATGTACTTCTCGTTCCA 60.095 50.000 0.00 0.00 0.00 3.53
2024 3662 3.128242 CCAAGACCATAAGCTTCAGCAAG 59.872 47.826 0.00 0.00 45.16 4.01
2027 3665 1.005215 ACCATAAGCTTCAGCAAGGCT 59.995 47.619 0.00 0.00 45.16 4.58
2036 3683 4.299547 AGCAAGGCTGTCGACGCA 62.300 61.111 25.67 5.29 37.57 5.24
2328 3975 2.273179 CCGTCCGTGGAGGTGAAGA 61.273 63.158 7.73 0.00 41.99 2.87
2423 4070 2.681778 CGGGACTCCCAGCTGAGT 60.682 66.667 17.39 11.99 45.83 3.41
2646 4311 6.804677 TGTCAACCGTTAGTGTAAGTTTAGA 58.195 36.000 0.00 0.00 0.00 2.10
2650 4315 7.811236 TCAACCGTTAGTGTAAGTTTAGATGAG 59.189 37.037 0.00 0.00 0.00 2.90
2651 4316 6.098017 ACCGTTAGTGTAAGTTTAGATGAGC 58.902 40.000 0.00 0.00 0.00 4.26
2652 4317 6.097356 CCGTTAGTGTAAGTTTAGATGAGCA 58.903 40.000 0.00 0.00 0.00 4.26
2653 4318 6.757010 CCGTTAGTGTAAGTTTAGATGAGCAT 59.243 38.462 0.00 0.00 0.00 3.79
2654 4319 7.254117 CCGTTAGTGTAAGTTTAGATGAGCATG 60.254 40.741 0.00 0.00 0.00 4.06
2655 4320 7.402640 GTTAGTGTAAGTTTAGATGAGCATGC 58.597 38.462 10.51 10.51 0.00 4.06
2656 4321 5.738909 AGTGTAAGTTTAGATGAGCATGCT 58.261 37.500 22.92 22.92 0.00 3.79
2657 4322 5.814705 AGTGTAAGTTTAGATGAGCATGCTC 59.185 40.000 35.76 35.76 43.01 4.26
2658 4323 5.007136 GTGTAAGTTTAGATGAGCATGCTCC 59.993 44.000 37.92 26.09 42.09 4.70
2659 4324 4.500499 AAGTTTAGATGAGCATGCTCCT 57.500 40.909 37.92 31.07 42.09 3.69
2660 4325 4.070630 AGTTTAGATGAGCATGCTCCTC 57.929 45.455 37.92 35.49 42.09 3.71
2661 4326 2.799412 GTTTAGATGAGCATGCTCCTCG 59.201 50.000 37.92 0.00 40.85 4.63
2662 4327 1.697284 TAGATGAGCATGCTCCTCGT 58.303 50.000 37.92 27.47 40.85 4.18
2663 4328 0.104487 AGATGAGCATGCTCCTCGTG 59.896 55.000 37.92 0.00 40.85 4.35
2664 4329 0.103755 GATGAGCATGCTCCTCGTGA 59.896 55.000 37.92 22.72 42.09 4.35
2665 4330 0.179089 ATGAGCATGCTCCTCGTGAC 60.179 55.000 37.92 17.14 42.09 3.67
2666 4331 1.253593 TGAGCATGCTCCTCGTGACT 61.254 55.000 37.92 6.86 42.09 3.41
2783 4504 5.047660 GGTTATCAATTTGCACCCAGTACAA 60.048 40.000 0.00 0.00 0.00 2.41
2843 4567 6.069731 AGGAAGATGAAGTAATTCTCAGCCTT 60.070 38.462 4.35 1.10 0.00 4.35
2884 4608 3.005897 TCTTTGAAGAAGAGACCGTGGAG 59.994 47.826 0.00 0.00 30.73 3.86
2897 4621 1.954146 GTGGAGTTTGAGCGCGTCA 60.954 57.895 8.43 7.68 0.00 4.35
2899 4623 0.245266 TGGAGTTTGAGCGCGTCATA 59.755 50.000 8.43 2.89 34.17 2.15
2918 4642 2.357446 GTGGCGGTGGGGGTTTAT 59.643 61.111 0.00 0.00 0.00 1.40
3102 4887 1.746760 GTTGCTTGCGACTTTGTGAG 58.253 50.000 5.78 0.00 0.00 3.51
3107 4892 2.348966 GCTTGCGACTTTGTGAGAACTC 60.349 50.000 0.00 0.00 0.00 3.01
3159 4951 2.683933 CACCTCTGGTAGCCCGGT 60.684 66.667 0.00 0.00 38.38 5.28
3160 4952 2.683933 ACCTCTGGTAGCCCGGTG 60.684 66.667 0.00 0.00 38.38 4.94
3165 5002 3.352338 CTGGTAGCCCGGTGTCGTC 62.352 68.421 0.00 0.00 31.86 4.20
3166 5003 4.487412 GGTAGCCCGGTGTCGTCG 62.487 72.222 0.00 0.00 33.95 5.12
3344 5204 0.036732 GTTCAGGACCTGATGTGCCA 59.963 55.000 24.85 6.10 40.39 4.92
3480 5404 4.576463 CCATCCAGTGCCATTAAGAAGTAC 59.424 45.833 0.00 0.00 0.00 2.73
3481 5405 5.431765 CATCCAGTGCCATTAAGAAGTACT 58.568 41.667 0.00 0.00 0.00 2.73
3482 5406 5.086104 TCCAGTGCCATTAAGAAGTACTC 57.914 43.478 0.00 0.00 0.00 2.59
3483 5407 4.081087 TCCAGTGCCATTAAGAAGTACTCC 60.081 45.833 0.00 0.00 0.00 3.85
3484 5408 4.192317 CAGTGCCATTAAGAAGTACTCCC 58.808 47.826 0.00 0.00 0.00 4.30
3485 5409 4.080863 CAGTGCCATTAAGAAGTACTCCCT 60.081 45.833 0.00 0.00 0.00 4.20
3486 5410 4.162509 AGTGCCATTAAGAAGTACTCCCTC 59.837 45.833 0.00 0.00 0.00 4.30
3487 5411 3.454812 TGCCATTAAGAAGTACTCCCTCC 59.545 47.826 0.00 0.00 0.00 4.30
3488 5412 3.492829 GCCATTAAGAAGTACTCCCTCCG 60.493 52.174 0.00 0.00 0.00 4.63
3489 5413 3.705072 CCATTAAGAAGTACTCCCTCCGT 59.295 47.826 0.00 0.00 0.00 4.69
3490 5414 4.202131 CCATTAAGAAGTACTCCCTCCGTC 60.202 50.000 0.00 0.00 0.00 4.79
3491 5415 1.849977 AAGAAGTACTCCCTCCGTCC 58.150 55.000 0.00 0.00 0.00 4.79
3492 5416 1.001282 AGAAGTACTCCCTCCGTCCT 58.999 55.000 0.00 0.00 0.00 3.85
3493 5417 2.203584 AGAAGTACTCCCTCCGTCCTA 58.796 52.381 0.00 0.00 0.00 2.94
3494 5418 2.579860 AGAAGTACTCCCTCCGTCCTAA 59.420 50.000 0.00 0.00 0.00 2.69
3495 5419 3.011032 AGAAGTACTCCCTCCGTCCTAAA 59.989 47.826 0.00 0.00 0.00 1.85
3496 5420 3.463048 AGTACTCCCTCCGTCCTAAAA 57.537 47.619 0.00 0.00 0.00 1.52
3497 5421 3.991683 AGTACTCCCTCCGTCCTAAAAT 58.008 45.455 0.00 0.00 0.00 1.82
3498 5422 5.134725 AGTACTCCCTCCGTCCTAAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3499 5423 4.892345 AGTACTCCCTCCGTCCTAAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
3500 5424 3.991683 ACTCCCTCCGTCCTAAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3501 5425 4.359996 ACTCCCTCCGTCCTAAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3502 5426 4.161754 ACTCCCTCCGTCCTAAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3503 5427 4.098894 TCCCTCCGTCCTAAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3504 5428 4.161001 TCCCTCCGTCCTAAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3505 5429 4.110482 CCTCCGTCCTAAAATACTTGTCG 58.890 47.826 0.00 0.00 0.00 4.35
3506 5430 4.142315 CCTCCGTCCTAAAATACTTGTCGA 60.142 45.833 0.00 0.00 0.00 4.20
3507 5431 5.389859 TCCGTCCTAAAATACTTGTCGAA 57.610 39.130 0.00 0.00 0.00 3.71
3508 5432 5.404946 TCCGTCCTAAAATACTTGTCGAAG 58.595 41.667 0.00 0.00 35.07 3.79
3509 5433 5.183713 TCCGTCCTAAAATACTTGTCGAAGA 59.816 40.000 0.00 0.00 32.98 2.87
3510 5434 5.865552 CCGTCCTAAAATACTTGTCGAAGAA 59.134 40.000 0.00 0.00 39.69 2.52
3511 5435 6.366877 CCGTCCTAAAATACTTGTCGAAGAAA 59.633 38.462 0.00 0.00 39.69 2.52
3512 5436 7.064253 CCGTCCTAAAATACTTGTCGAAGAAAT 59.936 37.037 0.00 0.00 39.69 2.17
3513 5437 7.898309 CGTCCTAAAATACTTGTCGAAGAAATG 59.102 37.037 0.00 0.00 39.69 2.32
3514 5438 7.692705 GTCCTAAAATACTTGTCGAAGAAATGC 59.307 37.037 0.00 0.00 39.69 3.56
3515 5439 7.389330 TCCTAAAATACTTGTCGAAGAAATGCA 59.611 33.333 0.00 0.00 39.69 3.96
3516 5440 8.184192 CCTAAAATACTTGTCGAAGAAATGCAT 58.816 33.333 0.00 0.00 39.69 3.96
3519 5443 9.906660 AAAATACTTGTCGAAGAAATGCATAAA 57.093 25.926 0.00 0.00 39.69 1.40
3520 5444 9.906660 AAATACTTGTCGAAGAAATGCATAAAA 57.093 25.926 0.00 0.00 39.69 1.52
3521 5445 9.906660 AATACTTGTCGAAGAAATGCATAAAAA 57.093 25.926 0.00 0.00 39.69 1.94
3569 5493 7.397892 ACATCTAGATACATTCATACCTCCG 57.602 40.000 4.54 0.00 0.00 4.63
3570 5494 7.175797 ACATCTAGATACATTCATACCTCCGA 58.824 38.462 4.54 0.00 0.00 4.55
3571 5495 7.121463 ACATCTAGATACATTCATACCTCCGAC 59.879 40.741 4.54 0.00 0.00 4.79
3572 5496 4.768130 AGATACATTCATACCTCCGACG 57.232 45.455 0.00 0.00 0.00 5.12
3573 5497 4.395625 AGATACATTCATACCTCCGACGA 58.604 43.478 0.00 0.00 0.00 4.20
3574 5498 4.825634 AGATACATTCATACCTCCGACGAA 59.174 41.667 0.00 0.00 0.00 3.85
3575 5499 5.477291 AGATACATTCATACCTCCGACGAAT 59.523 40.000 0.00 0.00 0.00 3.34
3576 5500 6.657966 AGATACATTCATACCTCCGACGAATA 59.342 38.462 0.00 0.00 0.00 1.75
3577 5501 5.723672 ACATTCATACCTCCGACGAATAT 57.276 39.130 0.00 0.00 0.00 1.28
3578 5502 6.097915 ACATTCATACCTCCGACGAATATT 57.902 37.500 0.00 0.00 0.00 1.28
3579 5503 6.522054 ACATTCATACCTCCGACGAATATTT 58.478 36.000 0.00 0.00 0.00 1.40
3580 5504 6.645415 ACATTCATACCTCCGACGAATATTTC 59.355 38.462 0.00 0.00 0.00 2.17
3581 5505 5.130292 TCATACCTCCGACGAATATTTCC 57.870 43.478 0.00 0.00 0.00 3.13
3582 5506 2.503920 ACCTCCGACGAATATTTCCG 57.496 50.000 0.00 0.00 0.00 4.30
3583 5507 1.068127 ACCTCCGACGAATATTTCCGG 59.932 52.381 14.21 14.21 41.36 5.14
3584 5508 1.338973 CCTCCGACGAATATTTCCGGA 59.661 52.381 18.96 18.96 45.74 5.14
3585 5509 2.391879 CTCCGACGAATATTTCCGGAC 58.608 52.381 1.83 0.00 43.47 4.79
3586 5510 1.126079 CCGACGAATATTTCCGGACG 58.874 55.000 1.83 5.89 42.49 4.79
3587 5511 1.126079 CGACGAATATTTCCGGACGG 58.874 55.000 1.83 3.96 0.00 4.79
3588 5512 1.268692 CGACGAATATTTCCGGACGGA 60.269 52.381 1.83 9.76 43.52 4.69
3589 5513 2.391879 GACGAATATTTCCGGACGGAG 58.608 52.381 13.64 3.15 46.06 4.63
3590 5514 1.068127 ACGAATATTTCCGGACGGAGG 59.932 52.381 13.64 0.00 46.06 4.30
3591 5515 1.604693 CGAATATTTCCGGACGGAGGG 60.605 57.143 13.64 0.00 46.06 4.30
3592 5516 1.690352 GAATATTTCCGGACGGAGGGA 59.310 52.381 13.64 4.95 46.06 4.20
3593 5517 1.339097 ATATTTCCGGACGGAGGGAG 58.661 55.000 13.64 0.00 46.06 4.30
3594 5518 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3595 5519 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3596 5520 0.251742 TTTCCGGACGGAGGGAGTAA 60.252 55.000 13.64 1.47 46.06 2.24
3597 5521 0.967380 TTCCGGACGGAGGGAGTAAC 60.967 60.000 13.64 0.00 46.06 2.50
3598 5522 1.379576 CCGGACGGAGGGAGTAACT 60.380 63.158 4.40 0.00 37.50 2.24
3599 5523 0.107017 CCGGACGGAGGGAGTAACTA 60.107 60.000 4.40 0.00 37.50 2.24
3600 5524 1.683011 CCGGACGGAGGGAGTAACTAA 60.683 57.143 4.40 0.00 37.50 2.24
3601 5525 2.094675 CGGACGGAGGGAGTAACTAAA 58.905 52.381 0.00 0.00 0.00 1.85
3602 5526 2.493278 CGGACGGAGGGAGTAACTAAAA 59.507 50.000 0.00 0.00 0.00 1.52
3603 5527 3.428589 CGGACGGAGGGAGTAACTAAAAG 60.429 52.174 0.00 0.00 0.00 2.27
3604 5528 3.519579 GACGGAGGGAGTAACTAAAAGC 58.480 50.000 0.00 0.00 0.00 3.51
3605 5529 2.901839 ACGGAGGGAGTAACTAAAAGCA 59.098 45.455 0.00 0.00 0.00 3.91
3606 5530 3.259902 CGGAGGGAGTAACTAAAAGCAC 58.740 50.000 0.00 0.00 0.00 4.40
3607 5531 3.306502 CGGAGGGAGTAACTAAAAGCACA 60.307 47.826 0.00 0.00 0.00 4.57
3608 5532 4.254492 GGAGGGAGTAACTAAAAGCACAG 58.746 47.826 0.00 0.00 0.00 3.66
3609 5533 4.262938 GGAGGGAGTAACTAAAAGCACAGT 60.263 45.833 0.00 0.00 0.00 3.55
3610 5534 4.642429 AGGGAGTAACTAAAAGCACAGTG 58.358 43.478 0.00 0.00 0.00 3.66
3611 5535 3.751698 GGGAGTAACTAAAAGCACAGTGG 59.248 47.826 1.84 0.00 0.00 4.00
3612 5536 3.188667 GGAGTAACTAAAAGCACAGTGGC 59.811 47.826 1.84 0.00 0.00 5.01
3613 5537 2.806244 AGTAACTAAAAGCACAGTGGCG 59.194 45.455 1.84 0.00 39.27 5.69
3614 5538 0.951558 AACTAAAAGCACAGTGGCGG 59.048 50.000 1.84 0.00 39.27 6.13
3615 5539 1.210155 CTAAAAGCACAGTGGCGGC 59.790 57.895 0.00 0.00 39.27 6.53
3616 5540 1.514678 CTAAAAGCACAGTGGCGGCA 61.515 55.000 7.97 7.97 39.27 5.69
3617 5541 1.514678 TAAAAGCACAGTGGCGGCAG 61.515 55.000 13.91 3.83 39.27 4.85
3618 5542 4.569180 AAGCACAGTGGCGGCAGT 62.569 61.111 13.91 14.22 39.27 4.40
3619 5543 2.674563 AAAGCACAGTGGCGGCAGTA 62.675 55.000 20.00 0.00 39.27 2.74
3620 5544 3.121030 GCACAGTGGCGGCAGTAG 61.121 66.667 20.00 15.55 0.00 2.57
3621 5545 2.343758 CACAGTGGCGGCAGTAGT 59.656 61.111 20.00 16.09 0.00 2.73
3622 5546 2.029288 CACAGTGGCGGCAGTAGTG 61.029 63.158 20.00 22.54 0.00 2.74
3623 5547 2.207229 ACAGTGGCGGCAGTAGTGA 61.207 57.895 20.00 0.00 0.00 3.41
3624 5548 1.219124 CAGTGGCGGCAGTAGTGAT 59.781 57.895 20.00 0.00 0.00 3.06
3625 5549 0.807667 CAGTGGCGGCAGTAGTGATC 60.808 60.000 20.00 0.93 0.00 2.92
3626 5550 1.878522 GTGGCGGCAGTAGTGATCG 60.879 63.158 13.91 5.61 0.00 3.69
3627 5551 2.348104 TGGCGGCAGTAGTGATCGT 61.348 57.895 7.97 0.00 0.00 3.73
3628 5552 1.589196 GGCGGCAGTAGTGATCGTC 60.589 63.158 3.07 2.19 0.00 4.20
3629 5553 1.433879 GCGGCAGTAGTGATCGTCT 59.566 57.895 0.42 0.00 0.00 4.18
3630 5554 0.867753 GCGGCAGTAGTGATCGTCTG 60.868 60.000 0.42 2.28 0.00 3.51
3631 5555 0.248661 CGGCAGTAGTGATCGTCTGG 60.249 60.000 0.42 0.00 0.00 3.86
3632 5556 0.818296 GGCAGTAGTGATCGTCTGGT 59.182 55.000 0.42 0.00 0.00 4.00
3633 5557 1.202313 GGCAGTAGTGATCGTCTGGTC 60.202 57.143 0.42 0.00 0.00 4.02
3634 5558 1.472878 GCAGTAGTGATCGTCTGGTCA 59.527 52.381 0.42 0.00 0.00 4.02
3635 5559 2.099921 GCAGTAGTGATCGTCTGGTCAT 59.900 50.000 0.42 0.00 0.00 3.06
3636 5560 3.700154 CAGTAGTGATCGTCTGGTCATG 58.300 50.000 0.00 0.00 0.00 3.07
3637 5561 3.378427 CAGTAGTGATCGTCTGGTCATGA 59.622 47.826 0.00 0.00 0.00 3.07
3638 5562 4.017126 AGTAGTGATCGTCTGGTCATGAA 58.983 43.478 0.00 0.00 0.00 2.57
3639 5563 3.961480 AGTGATCGTCTGGTCATGAAA 57.039 42.857 0.00 0.00 0.00 2.69
3640 5564 4.478206 AGTGATCGTCTGGTCATGAAAT 57.522 40.909 0.00 0.00 0.00 2.17
3641 5565 4.437239 AGTGATCGTCTGGTCATGAAATC 58.563 43.478 0.00 0.00 0.00 2.17
3642 5566 4.161189 AGTGATCGTCTGGTCATGAAATCT 59.839 41.667 0.00 0.00 0.00 2.40
3643 5567 4.505922 GTGATCGTCTGGTCATGAAATCTC 59.494 45.833 0.00 0.00 0.00 2.75
3644 5568 3.150848 TCGTCTGGTCATGAAATCTCG 57.849 47.619 0.00 0.69 0.00 4.04
3645 5569 2.752903 TCGTCTGGTCATGAAATCTCGA 59.247 45.455 0.00 3.26 0.00 4.04
3646 5570 3.381590 TCGTCTGGTCATGAAATCTCGAT 59.618 43.478 0.00 0.00 0.00 3.59
3647 5571 4.578928 TCGTCTGGTCATGAAATCTCGATA 59.421 41.667 0.00 0.00 0.00 2.92
3648 5572 4.677378 CGTCTGGTCATGAAATCTCGATAC 59.323 45.833 0.00 0.00 0.00 2.24
3649 5573 5.592054 GTCTGGTCATGAAATCTCGATACA 58.408 41.667 0.00 0.00 0.00 2.29
3650 5574 6.042777 GTCTGGTCATGAAATCTCGATACAA 58.957 40.000 0.00 0.00 0.00 2.41
3651 5575 6.019479 GTCTGGTCATGAAATCTCGATACAAC 60.019 42.308 0.00 0.00 0.00 3.32
3652 5576 5.977635 TGGTCATGAAATCTCGATACAACT 58.022 37.500 0.00 0.00 0.00 3.16
3653 5577 6.406370 TGGTCATGAAATCTCGATACAACTT 58.594 36.000 0.00 0.00 0.00 2.66
3654 5578 6.535150 TGGTCATGAAATCTCGATACAACTTC 59.465 38.462 0.00 0.00 0.00 3.01
3655 5579 6.758886 GGTCATGAAATCTCGATACAACTTCT 59.241 38.462 0.00 0.00 0.00 2.85
3656 5580 7.921214 GGTCATGAAATCTCGATACAACTTCTA 59.079 37.037 0.00 0.00 0.00 2.10
3657 5581 9.469807 GTCATGAAATCTCGATACAACTTCTAT 57.530 33.333 0.00 0.00 0.00 1.98
3658 5582 9.684448 TCATGAAATCTCGATACAACTTCTATC 57.316 33.333 0.00 0.00 0.00 2.08
3659 5583 9.468532 CATGAAATCTCGATACAACTTCTATCA 57.531 33.333 0.00 0.00 0.00 2.15
3663 5587 9.613957 AAATCTCGATACAACTTCTATCATACG 57.386 33.333 0.00 0.00 0.00 3.06
3664 5588 7.958053 TCTCGATACAACTTCTATCATACGA 57.042 36.000 0.00 0.00 0.00 3.43
3665 5589 8.019769 TCTCGATACAACTTCTATCATACGAG 57.980 38.462 0.00 0.00 41.92 4.18
3666 5590 7.656542 TCTCGATACAACTTCTATCATACGAGT 59.343 37.037 0.00 0.00 41.51 4.18
3667 5591 8.822652 TCGATACAACTTCTATCATACGAGTA 57.177 34.615 0.00 0.00 0.00 2.59
3668 5592 9.433153 TCGATACAACTTCTATCATACGAGTAT 57.567 33.333 0.00 0.00 0.00 2.12
3673 5597 9.737427 ACAACTTCTATCATACGAGTATTTGAG 57.263 33.333 0.00 0.49 0.00 3.02
3674 5598 9.952188 CAACTTCTATCATACGAGTATTTGAGA 57.048 33.333 0.00 0.00 0.00 3.27
3677 5601 8.972262 TTCTATCATACGAGTATTTGAGATGC 57.028 34.615 0.00 0.00 0.00 3.91
3678 5602 7.539436 TCTATCATACGAGTATTTGAGATGCC 58.461 38.462 0.00 0.00 0.00 4.40
3679 5603 5.791336 TCATACGAGTATTTGAGATGCCT 57.209 39.130 0.00 0.00 0.00 4.75
3680 5604 6.161855 TCATACGAGTATTTGAGATGCCTT 57.838 37.500 0.00 0.00 0.00 4.35
3681 5605 5.985530 TCATACGAGTATTTGAGATGCCTTG 59.014 40.000 0.00 0.00 0.00 3.61
3682 5606 4.207891 ACGAGTATTTGAGATGCCTTGT 57.792 40.909 0.00 0.00 0.00 3.16
3683 5607 3.935203 ACGAGTATTTGAGATGCCTTGTG 59.065 43.478 0.00 0.00 0.00 3.33
3684 5608 3.935203 CGAGTATTTGAGATGCCTTGTGT 59.065 43.478 0.00 0.00 0.00 3.72
3685 5609 4.393062 CGAGTATTTGAGATGCCTTGTGTT 59.607 41.667 0.00 0.00 0.00 3.32
3686 5610 5.106555 CGAGTATTTGAGATGCCTTGTGTTT 60.107 40.000 0.00 0.00 0.00 2.83
3687 5611 6.092122 CGAGTATTTGAGATGCCTTGTGTTTA 59.908 38.462 0.00 0.00 0.00 2.01
3688 5612 7.360861 CGAGTATTTGAGATGCCTTGTGTTTAA 60.361 37.037 0.00 0.00 0.00 1.52
3689 5613 8.353423 AGTATTTGAGATGCCTTGTGTTTAAT 57.647 30.769 0.00 0.00 0.00 1.40
3690 5614 9.461312 AGTATTTGAGATGCCTTGTGTTTAATA 57.539 29.630 0.00 0.00 0.00 0.98
3692 5616 8.986477 ATTTGAGATGCCTTGTGTTTAATAAC 57.014 30.769 0.00 0.00 34.75 1.89
3693 5617 6.509418 TGAGATGCCTTGTGTTTAATAACC 57.491 37.500 0.00 0.00 33.15 2.85
3694 5618 6.245408 TGAGATGCCTTGTGTTTAATAACCT 58.755 36.000 0.00 0.00 33.15 3.50
3695 5619 7.398829 TGAGATGCCTTGTGTTTAATAACCTA 58.601 34.615 0.00 0.00 33.15 3.08
3696 5620 7.552687 TGAGATGCCTTGTGTTTAATAACCTAG 59.447 37.037 0.00 0.00 33.15 3.02
3697 5621 7.402862 AGATGCCTTGTGTTTAATAACCTAGT 58.597 34.615 0.00 0.00 33.15 2.57
3698 5622 6.811253 TGCCTTGTGTTTAATAACCTAGTG 57.189 37.500 0.00 0.00 33.15 2.74
3699 5623 5.182380 TGCCTTGTGTTTAATAACCTAGTGC 59.818 40.000 0.00 0.00 33.15 4.40
3700 5624 5.392703 GCCTTGTGTTTAATAACCTAGTGCC 60.393 44.000 0.00 0.00 33.15 5.01
3701 5625 5.944007 CCTTGTGTTTAATAACCTAGTGCCT 59.056 40.000 0.00 0.00 33.15 4.75
3702 5626 7.107542 CCTTGTGTTTAATAACCTAGTGCCTA 58.892 38.462 0.00 0.00 33.15 3.93
3703 5627 7.608761 CCTTGTGTTTAATAACCTAGTGCCTAA 59.391 37.037 0.00 0.00 33.15 2.69
3704 5628 9.174166 CTTGTGTTTAATAACCTAGTGCCTAAT 57.826 33.333 0.00 0.00 33.15 1.73
3705 5629 8.726870 TGTGTTTAATAACCTAGTGCCTAATC 57.273 34.615 0.00 0.00 33.15 1.75
3706 5630 7.493320 TGTGTTTAATAACCTAGTGCCTAATCG 59.507 37.037 0.00 0.00 33.15 3.34
3707 5631 7.707893 GTGTTTAATAACCTAGTGCCTAATCGA 59.292 37.037 0.00 0.00 33.15 3.59
3708 5632 8.426489 TGTTTAATAACCTAGTGCCTAATCGAT 58.574 33.333 0.00 0.00 33.15 3.59
3709 5633 9.918630 GTTTAATAACCTAGTGCCTAATCGATA 57.081 33.333 0.00 0.00 0.00 2.92
3730 5654 9.869757 TCGATAGAATTTGTTGTCAGATAAAGA 57.130 29.630 0.00 0.00 46.15 2.52
3735 5659 8.457261 AGAATTTGTTGTCAGATAAAGAGATGC 58.543 33.333 0.00 0.00 0.00 3.91
3736 5660 7.934855 ATTTGTTGTCAGATAAAGAGATGCT 57.065 32.000 0.00 0.00 0.00 3.79
3737 5661 6.732531 TTGTTGTCAGATAAAGAGATGCTG 57.267 37.500 0.00 0.00 0.00 4.41
3738 5662 6.041423 TGTTGTCAGATAAAGAGATGCTGA 57.959 37.500 0.00 0.00 33.58 4.26
3739 5663 6.647229 TGTTGTCAGATAAAGAGATGCTGAT 58.353 36.000 0.00 0.00 37.84 2.90
3740 5664 7.785033 TGTTGTCAGATAAAGAGATGCTGATA 58.215 34.615 0.00 0.00 37.84 2.15
3741 5665 7.924947 TGTTGTCAGATAAAGAGATGCTGATAG 59.075 37.037 0.00 0.00 37.84 2.08
3742 5666 7.830099 TGTCAGATAAAGAGATGCTGATAGA 57.170 36.000 0.00 0.00 37.84 1.98
3743 5667 8.242729 TGTCAGATAAAGAGATGCTGATAGAA 57.757 34.615 0.00 0.00 37.84 2.10
3744 5668 8.699130 TGTCAGATAAAGAGATGCTGATAGAAA 58.301 33.333 0.00 0.00 37.84 2.52
3745 5669 9.539825 GTCAGATAAAGAGATGCTGATAGAAAA 57.460 33.333 0.00 0.00 37.84 2.29
3769 5693 7.992180 AAAGAGTTGCTGTGATAAACTTTTG 57.008 32.000 0.00 0.00 34.37 2.44
3770 5694 6.699575 AGAGTTGCTGTGATAAACTTTTGT 57.300 33.333 0.00 0.00 34.37 2.83
3771 5695 7.801716 AGAGTTGCTGTGATAAACTTTTGTA 57.198 32.000 0.00 0.00 34.37 2.41
3772 5696 8.220755 AGAGTTGCTGTGATAAACTTTTGTAA 57.779 30.769 0.00 0.00 34.37 2.41
3773 5697 8.682710 AGAGTTGCTGTGATAAACTTTTGTAAA 58.317 29.630 0.00 0.00 34.37 2.01
3774 5698 9.296400 GAGTTGCTGTGATAAACTTTTGTAAAA 57.704 29.630 0.00 0.00 34.37 1.52
3776 5700 9.296400 GTTGCTGTGATAAACTTTTGTAAAAGA 57.704 29.630 20.48 2.54 46.39 2.52
3778 5702 9.677567 TGCTGTGATAAACTTTTGTAAAAGATC 57.322 29.630 20.48 14.01 46.39 2.75
3779 5703 9.129209 GCTGTGATAAACTTTTGTAAAAGATCC 57.871 33.333 20.48 9.68 46.39 3.36
3780 5704 9.329913 CTGTGATAAACTTTTGTAAAAGATCCG 57.670 33.333 20.48 0.00 46.39 4.18
3781 5705 9.058174 TGTGATAAACTTTTGTAAAAGATCCGA 57.942 29.630 20.48 4.88 46.39 4.55
3784 5708 9.717892 GATAAACTTTTGTAAAAGATCCGATCC 57.282 33.333 20.48 0.00 46.39 3.36
3785 5709 7.761038 AAACTTTTGTAAAAGATCCGATCCT 57.239 32.000 20.48 0.00 46.39 3.24
3786 5710 7.761038 AACTTTTGTAAAAGATCCGATCCTT 57.239 32.000 20.48 2.21 46.39 3.36
3787 5711 7.761038 ACTTTTGTAAAAGATCCGATCCTTT 57.239 32.000 20.48 9.42 46.39 3.11
3788 5712 8.178313 ACTTTTGTAAAAGATCCGATCCTTTT 57.822 30.769 20.48 13.60 46.39 2.27
3789 5713 8.297426 ACTTTTGTAAAAGATCCGATCCTTTTC 58.703 33.333 20.48 6.30 46.39 2.29
3790 5714 7.753309 TTTGTAAAAGATCCGATCCTTTTCA 57.247 32.000 9.70 8.45 41.30 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 35 1.599797 GGGTACGTTGGCAACTGCT 60.600 57.895 26.26 12.08 41.70 4.24
31 36 1.448922 TTGGGTACGTTGGCAACTGC 61.449 55.000 26.26 16.43 41.14 4.40
32 37 0.309612 GTTGGGTACGTTGGCAACTG 59.690 55.000 26.26 20.99 37.61 3.16
33 38 0.181824 AGTTGGGTACGTTGGCAACT 59.818 50.000 26.26 16.12 37.61 3.16
34 39 1.532437 GTAGTTGGGTACGTTGGCAAC 59.468 52.381 20.27 20.27 0.00 4.17
48 53 0.892755 TACACGGCTGGGAGTAGTTG 59.107 55.000 0.00 0.00 0.00 3.16
54 59 2.185350 CTGCTACACGGCTGGGAG 59.815 66.667 0.00 0.00 0.00 4.30
126 131 3.715638 AGCTAGGTTCCCAAGTTAACC 57.284 47.619 0.88 0.00 44.59 2.85
127 132 5.672421 TCTAGCTAGGTTCCCAAGTTAAC 57.328 43.478 20.58 0.00 0.00 2.01
128 133 6.886178 ATTCTAGCTAGGTTCCCAAGTTAA 57.114 37.500 20.58 3.44 0.00 2.01
129 134 6.886178 AATTCTAGCTAGGTTCCCAAGTTA 57.114 37.500 20.58 0.00 0.00 2.24
141 146 9.935241 TCATATTAGCTCCAAAATTCTAGCTAG 57.065 33.333 15.01 15.01 45.49 3.42
142 147 9.935241 CTCATATTAGCTCCAAAATTCTAGCTA 57.065 33.333 0.00 0.00 43.29 3.32
143 148 7.390162 GCTCATATTAGCTCCAAAATTCTAGCT 59.610 37.037 1.47 0.00 46.58 3.32
144 149 7.525759 GCTCATATTAGCTCCAAAATTCTAGC 58.474 38.462 1.47 0.00 39.50 3.42
250 374 1.300542 AAACCGCACGCAAAATGGG 60.301 52.632 0.00 0.00 36.28 4.00
281 405 1.661463 TGATTTGGAGAGAGCTGGGT 58.339 50.000 0.00 0.00 0.00 4.51
292 416 1.948104 CCGGCGAGTAATGATTTGGA 58.052 50.000 9.30 0.00 0.00 3.53
352 504 3.189287 ACATCAGATGAACCGTTTTGAGC 59.811 43.478 17.81 0.00 0.00 4.26
353 505 5.639506 ACTACATCAGATGAACCGTTTTGAG 59.360 40.000 17.81 1.57 0.00 3.02
355 507 5.444613 CGACTACATCAGATGAACCGTTTTG 60.445 44.000 17.81 0.00 0.00 2.44
356 508 4.625742 CGACTACATCAGATGAACCGTTTT 59.374 41.667 17.81 0.00 0.00 2.43
360 512 3.692791 TCGACTACATCAGATGAACCG 57.307 47.619 17.81 13.38 0.00 4.44
362 514 6.706055 TTTGTTCGACTACATCAGATGAAC 57.294 37.500 17.81 9.93 39.84 3.18
364 516 5.869344 CCTTTTGTTCGACTACATCAGATGA 59.131 40.000 17.81 0.22 0.00 2.92
369 521 4.919168 CGTACCTTTTGTTCGACTACATCA 59.081 41.667 0.00 0.00 39.81 3.07
375 527 1.270465 CCCCGTACCTTTTGTTCGACT 60.270 52.381 0.00 0.00 39.81 4.18
377 529 1.047002 TCCCCGTACCTTTTGTTCGA 58.953 50.000 0.00 0.00 39.81 3.71
386 538 1.708993 ATGCATGCATCCCCGTACCT 61.709 55.000 27.46 1.89 29.42 3.08
388 540 0.819259 ACATGCATGCATCCCCGTAC 60.819 55.000 30.07 0.00 33.90 3.67
389 541 0.534877 GACATGCATGCATCCCCGTA 60.535 55.000 30.07 0.61 33.90 4.02
390 542 1.825191 GACATGCATGCATCCCCGT 60.825 57.895 30.07 23.57 33.90 5.28
391 543 2.900167 CGACATGCATGCATCCCCG 61.900 63.158 30.07 25.64 33.90 5.73
392 544 3.036577 CGACATGCATGCATCCCC 58.963 61.111 30.07 19.21 33.90 4.81
408 560 2.667536 AGAACCTGCTGTGCTGCG 60.668 61.111 0.00 0.00 28.67 5.18
445 610 1.617263 GGAGTAGGGTGAGCTGTCAGA 60.617 57.143 3.32 0.00 31.53 3.27
473 638 1.288419 TTGCGATGGTGCTGTACGTG 61.288 55.000 0.00 0.00 35.36 4.49
476 641 2.697431 TTTTTGCGATGGTGCTGTAC 57.303 45.000 0.00 0.00 35.36 2.90
482 647 4.919206 TGTATAGCATTTTTGCGATGGTG 58.081 39.130 4.17 0.00 40.27 4.17
484 649 6.667370 TGTATGTATAGCATTTTTGCGATGG 58.333 36.000 4.17 0.00 38.94 3.51
485 650 8.559222 TTTGTATGTATAGCATTTTTGCGATG 57.441 30.769 4.17 0.00 38.94 3.84
487 652 8.855279 GTTTTTGTATGTATAGCATTTTTGCGA 58.145 29.630 0.00 0.00 38.94 5.10
488 653 8.859156 AGTTTTTGTATGTATAGCATTTTTGCG 58.141 29.630 0.00 0.00 38.94 4.85
494 659 9.982291 CGTGTAAGTTTTTGTATGTATAGCATT 57.018 29.630 0.00 0.00 38.94 3.56
495 660 8.120465 GCGTGTAAGTTTTTGTATGTATAGCAT 58.880 33.333 0.00 0.00 41.42 3.79
496 661 7.332430 AGCGTGTAAGTTTTTGTATGTATAGCA 59.668 33.333 0.00 0.00 0.00 3.49
497 662 7.681903 AGCGTGTAAGTTTTTGTATGTATAGC 58.318 34.615 0.00 0.00 0.00 2.97
501 666 9.649024 GTAAAAGCGTGTAAGTTTTTGTATGTA 57.351 29.630 3.50 0.00 35.76 2.29
502 667 8.182881 TGTAAAAGCGTGTAAGTTTTTGTATGT 58.817 29.630 3.50 0.00 35.76 2.29
503 668 8.549777 TGTAAAAGCGTGTAAGTTTTTGTATG 57.450 30.769 3.50 0.00 35.76 2.39
504 669 9.176181 CATGTAAAAGCGTGTAAGTTTTTGTAT 57.824 29.630 3.50 0.00 35.76 2.29
505 670 7.166142 GCATGTAAAAGCGTGTAAGTTTTTGTA 59.834 33.333 0.00 0.00 35.76 2.41
506 671 6.020201 GCATGTAAAAGCGTGTAAGTTTTTGT 60.020 34.615 0.00 0.00 35.76 2.83
507 672 6.198216 AGCATGTAAAAGCGTGTAAGTTTTTG 59.802 34.615 0.00 0.00 35.76 2.44
508 673 6.270064 AGCATGTAAAAGCGTGTAAGTTTTT 58.730 32.000 0.00 0.00 37.99 1.94
509 674 5.827666 AGCATGTAAAAGCGTGTAAGTTTT 58.172 33.333 0.00 0.00 35.48 2.43
510 675 5.432885 AGCATGTAAAAGCGTGTAAGTTT 57.567 34.783 0.00 0.00 35.48 2.66
511 676 4.083484 GGAGCATGTAAAAGCGTGTAAGTT 60.083 41.667 0.00 0.00 35.48 2.66
512 677 3.435671 GGAGCATGTAAAAGCGTGTAAGT 59.564 43.478 0.00 0.00 35.48 2.24
513 678 3.684788 AGGAGCATGTAAAAGCGTGTAAG 59.315 43.478 0.00 0.00 35.48 2.34
514 679 3.670625 AGGAGCATGTAAAAGCGTGTAA 58.329 40.909 0.00 0.00 35.48 2.41
515 680 3.328382 AGGAGCATGTAAAAGCGTGTA 57.672 42.857 0.00 0.00 35.48 2.90
516 681 2.185004 AGGAGCATGTAAAAGCGTGT 57.815 45.000 0.00 0.00 35.48 4.49
517 682 3.058293 TGAAAGGAGCATGTAAAAGCGTG 60.058 43.478 0.00 0.00 35.48 5.34
518 683 3.146066 TGAAAGGAGCATGTAAAAGCGT 58.854 40.909 0.00 0.00 35.48 5.07
519 684 3.829886 TGAAAGGAGCATGTAAAAGCG 57.170 42.857 0.00 0.00 35.48 4.68
520 685 5.573337 AGATGAAAGGAGCATGTAAAAGC 57.427 39.130 0.00 0.00 0.00 3.51
521 686 8.044060 TGTTAGATGAAAGGAGCATGTAAAAG 57.956 34.615 0.00 0.00 34.56 2.27
522 687 7.994425 TGTTAGATGAAAGGAGCATGTAAAA 57.006 32.000 0.00 0.00 34.56 1.52
523 688 7.994425 TTGTTAGATGAAAGGAGCATGTAAA 57.006 32.000 0.00 0.00 34.56 2.01
524 689 7.828717 TGATTGTTAGATGAAAGGAGCATGTAA 59.171 33.333 0.00 0.00 31.54 2.41
525 690 7.337938 TGATTGTTAGATGAAAGGAGCATGTA 58.662 34.615 0.00 0.00 0.00 2.29
526 691 6.182627 TGATTGTTAGATGAAAGGAGCATGT 58.817 36.000 0.00 0.00 0.00 3.21
527 692 6.688637 TGATTGTTAGATGAAAGGAGCATG 57.311 37.500 0.00 0.00 0.00 4.06
528 693 7.558807 TGATTGATTGTTAGATGAAAGGAGCAT 59.441 33.333 0.00 0.00 0.00 3.79
529 694 6.885918 TGATTGATTGTTAGATGAAAGGAGCA 59.114 34.615 0.00 0.00 0.00 4.26
530 695 7.148188 TGTGATTGATTGTTAGATGAAAGGAGC 60.148 37.037 0.00 0.00 0.00 4.70
531 696 8.272545 TGTGATTGATTGTTAGATGAAAGGAG 57.727 34.615 0.00 0.00 0.00 3.69
532 697 8.634335 TTGTGATTGATTGTTAGATGAAAGGA 57.366 30.769 0.00 0.00 0.00 3.36
533 698 9.132521 GTTTGTGATTGATTGTTAGATGAAAGG 57.867 33.333 0.00 0.00 0.00 3.11
534 699 9.132521 GGTTTGTGATTGATTGTTAGATGAAAG 57.867 33.333 0.00 0.00 0.00 2.62
535 700 8.859090 AGGTTTGTGATTGATTGTTAGATGAAA 58.141 29.630 0.00 0.00 0.00 2.69
536 701 8.408043 AGGTTTGTGATTGATTGTTAGATGAA 57.592 30.769 0.00 0.00 0.00 2.57
537 702 7.884877 AGAGGTTTGTGATTGATTGTTAGATGA 59.115 33.333 0.00 0.00 0.00 2.92
538 703 8.048534 AGAGGTTTGTGATTGATTGTTAGATG 57.951 34.615 0.00 0.00 0.00 2.90
539 704 7.337942 GGAGAGGTTTGTGATTGATTGTTAGAT 59.662 37.037 0.00 0.00 0.00 1.98
540 705 6.655003 GGAGAGGTTTGTGATTGATTGTTAGA 59.345 38.462 0.00 0.00 0.00 2.10
541 706 6.656693 AGGAGAGGTTTGTGATTGATTGTTAG 59.343 38.462 0.00 0.00 0.00 2.34
542 707 6.542821 AGGAGAGGTTTGTGATTGATTGTTA 58.457 36.000 0.00 0.00 0.00 2.41
543 708 5.388654 AGGAGAGGTTTGTGATTGATTGTT 58.611 37.500 0.00 0.00 0.00 2.83
544 709 4.990526 AGGAGAGGTTTGTGATTGATTGT 58.009 39.130 0.00 0.00 0.00 2.71
545 710 4.397417 GGAGGAGAGGTTTGTGATTGATTG 59.603 45.833 0.00 0.00 0.00 2.67
546 711 4.568592 GGGAGGAGAGGTTTGTGATTGATT 60.569 45.833 0.00 0.00 0.00 2.57
547 712 3.054065 GGGAGGAGAGGTTTGTGATTGAT 60.054 47.826 0.00 0.00 0.00 2.57
548 713 2.305927 GGGAGGAGAGGTTTGTGATTGA 59.694 50.000 0.00 0.00 0.00 2.57
549 714 2.307098 AGGGAGGAGAGGTTTGTGATTG 59.693 50.000 0.00 0.00 0.00 2.67
550 715 2.307098 CAGGGAGGAGAGGTTTGTGATT 59.693 50.000 0.00 0.00 0.00 2.57
551 716 1.912043 CAGGGAGGAGAGGTTTGTGAT 59.088 52.381 0.00 0.00 0.00 3.06
552 717 1.132849 TCAGGGAGGAGAGGTTTGTGA 60.133 52.381 0.00 0.00 0.00 3.58
553 718 1.352083 TCAGGGAGGAGAGGTTTGTG 58.648 55.000 0.00 0.00 0.00 3.33
554 719 2.350863 ATCAGGGAGGAGAGGTTTGT 57.649 50.000 0.00 0.00 0.00 2.83
555 720 3.728385 AAATCAGGGAGGAGAGGTTTG 57.272 47.619 0.00 0.00 0.00 2.93
556 721 3.657727 TGAAAATCAGGGAGGAGAGGTTT 59.342 43.478 0.00 0.00 0.00 3.27
557 722 3.260205 TGAAAATCAGGGAGGAGAGGTT 58.740 45.455 0.00 0.00 0.00 3.50
558 723 2.843113 CTGAAAATCAGGGAGGAGAGGT 59.157 50.000 0.00 0.00 40.71 3.85
559 724 3.557228 CTGAAAATCAGGGAGGAGAGG 57.443 52.381 0.00 0.00 40.71 3.69
569 734 2.350522 CGGTCCACTCCTGAAAATCAG 58.649 52.381 0.32 0.32 43.91 2.90
570 735 1.610624 GCGGTCCACTCCTGAAAATCA 60.611 52.381 0.00 0.00 0.00 2.57
571 736 1.087501 GCGGTCCACTCCTGAAAATC 58.912 55.000 0.00 0.00 0.00 2.17
572 737 0.322546 GGCGGTCCACTCCTGAAAAT 60.323 55.000 0.00 0.00 0.00 1.82
573 738 1.072505 GGCGGTCCACTCCTGAAAA 59.927 57.895 0.00 0.00 0.00 2.29
574 739 2.747686 GGCGGTCCACTCCTGAAA 59.252 61.111 0.00 0.00 0.00 2.69
575 740 3.319198 GGGCGGTCCACTCCTGAA 61.319 66.667 0.00 0.00 35.00 3.02
587 752 3.861797 AATAGGTGAGCGGGGCGG 61.862 66.667 0.00 0.00 0.00 6.13
588 753 2.588877 CAATAGGTGAGCGGGGCG 60.589 66.667 0.00 0.00 0.00 6.13
589 754 1.523938 GTCAATAGGTGAGCGGGGC 60.524 63.158 0.00 0.00 36.74 5.80
590 755 1.146263 GGTCAATAGGTGAGCGGGG 59.854 63.158 0.00 0.00 44.38 5.73
591 756 4.857251 GGTCAATAGGTGAGCGGG 57.143 61.111 0.00 0.00 44.38 6.13
595 760 8.616076 GTTAATCTTGATTGGTCAATAGGTGAG 58.384 37.037 6.15 0.00 43.08 3.51
596 761 7.556275 GGTTAATCTTGATTGGTCAATAGGTGA 59.444 37.037 6.15 0.00 43.08 4.02
597 762 7.339212 TGGTTAATCTTGATTGGTCAATAGGTG 59.661 37.037 6.15 0.00 43.08 4.00
598 763 7.410174 TGGTTAATCTTGATTGGTCAATAGGT 58.590 34.615 6.15 0.00 43.08 3.08
599 764 7.880160 TGGTTAATCTTGATTGGTCAATAGG 57.120 36.000 6.15 0.00 43.08 2.57
600 765 9.347240 AGATGGTTAATCTTGATTGGTCAATAG 57.653 33.333 6.15 0.00 43.52 1.73
619 784 8.626526 ACGATTTACAGTTTTTACAAGATGGTT 58.373 29.630 0.00 0.00 0.00 3.67
620 785 8.161699 ACGATTTACAGTTTTTACAAGATGGT 57.838 30.769 0.00 0.00 0.00 3.55
621 786 9.458374 AAACGATTTACAGTTTTTACAAGATGG 57.542 29.630 0.00 0.00 37.27 3.51
644 809 2.723618 CGGCAATGCTACACGTACAAAC 60.724 50.000 4.82 0.00 0.00 2.93
645 810 1.461512 CGGCAATGCTACACGTACAAA 59.538 47.619 4.82 0.00 0.00 2.83
646 811 1.072391 CGGCAATGCTACACGTACAA 58.928 50.000 4.82 0.00 0.00 2.41
647 812 0.738063 CCGGCAATGCTACACGTACA 60.738 55.000 4.82 0.00 0.00 2.90
648 813 2.003672 CCGGCAATGCTACACGTAC 58.996 57.895 4.82 0.00 0.00 3.67
649 814 1.812093 GCCGGCAATGCTACACGTA 60.812 57.895 24.80 0.00 0.00 3.57
650 815 3.124921 GCCGGCAATGCTACACGT 61.125 61.111 24.80 0.00 0.00 4.49
651 816 3.124270 TGCCGGCAATGCTACACG 61.124 61.111 30.74 0.00 0.00 4.49
652 817 2.485122 GTGCCGGCAATGCTACAC 59.515 61.111 34.66 12.82 0.00 2.90
653 818 2.749839 GGTGCCGGCAATGCTACA 60.750 61.111 34.66 1.55 0.00 2.74
654 819 2.063541 GATGGTGCCGGCAATGCTAC 62.064 60.000 34.66 18.03 0.00 3.58
655 820 1.823470 GATGGTGCCGGCAATGCTA 60.823 57.895 34.66 18.16 0.00 3.49
656 821 3.142838 GATGGTGCCGGCAATGCT 61.143 61.111 34.66 16.61 0.00 3.79
657 822 4.557605 CGATGGTGCCGGCAATGC 62.558 66.667 34.66 19.74 0.00 3.56
658 823 4.557605 GCGATGGTGCCGGCAATG 62.558 66.667 34.66 19.66 0.00 2.82
664 829 3.928769 CACGATGCGATGGTGCCG 61.929 66.667 0.00 0.00 32.37 5.69
665 830 2.819595 ACACGATGCGATGGTGCC 60.820 61.111 9.85 0.00 41.93 5.01
666 831 2.400798 CACACGATGCGATGGTGC 59.599 61.111 9.85 0.00 41.93 5.01
667 832 0.811219 ATCCACACGATGCGATGGTG 60.811 55.000 12.16 8.82 43.52 4.17
668 833 0.530650 GATCCACACGATGCGATGGT 60.531 55.000 12.16 3.68 37.68 3.55
669 834 1.224069 GGATCCACACGATGCGATGG 61.224 60.000 6.95 0.00 37.75 3.51
670 835 0.249615 AGGATCCACACGATGCGATG 60.250 55.000 15.82 0.00 43.76 3.84
671 836 0.249615 CAGGATCCACACGATGCGAT 60.250 55.000 15.82 0.00 43.76 4.58
672 837 1.141665 CAGGATCCACACGATGCGA 59.858 57.895 15.82 0.00 43.76 5.10
673 838 1.141665 TCAGGATCCACACGATGCG 59.858 57.895 15.82 0.00 43.76 4.73
674 839 0.108186 TGTCAGGATCCACACGATGC 60.108 55.000 15.82 0.00 39.54 3.91
675 840 2.102084 AGATGTCAGGATCCACACGATG 59.898 50.000 15.82 1.89 0.00 3.84
676 841 2.392662 AGATGTCAGGATCCACACGAT 58.607 47.619 15.82 6.20 0.00 3.73
677 842 1.852633 AGATGTCAGGATCCACACGA 58.147 50.000 15.82 1.58 0.00 4.35
678 843 2.094026 TGAAGATGTCAGGATCCACACG 60.094 50.000 15.82 0.00 0.00 4.49
679 844 3.055530 AGTGAAGATGTCAGGATCCACAC 60.056 47.826 15.82 10.31 36.74 3.82
680 845 3.176411 AGTGAAGATGTCAGGATCCACA 58.824 45.455 15.82 11.13 36.74 4.17
681 846 3.736433 CGAGTGAAGATGTCAGGATCCAC 60.736 52.174 15.82 4.74 36.74 4.02
682 847 2.428530 CGAGTGAAGATGTCAGGATCCA 59.571 50.000 15.82 0.00 36.74 3.41
683 848 2.801342 GCGAGTGAAGATGTCAGGATCC 60.801 54.545 2.48 2.48 36.74 3.36
684 849 2.100584 AGCGAGTGAAGATGTCAGGATC 59.899 50.000 0.00 0.00 36.74 3.36
685 850 2.106566 AGCGAGTGAAGATGTCAGGAT 58.893 47.619 0.00 0.00 36.74 3.24
686 851 1.203287 CAGCGAGTGAAGATGTCAGGA 59.797 52.381 0.00 0.00 36.74 3.86
687 852 1.638133 CAGCGAGTGAAGATGTCAGG 58.362 55.000 0.00 0.00 36.74 3.86
688 853 0.997932 GCAGCGAGTGAAGATGTCAG 59.002 55.000 0.00 0.00 36.74 3.51
692 857 1.279152 CTGAGCAGCGAGTGAAGATG 58.721 55.000 0.00 0.00 0.00 2.90
751 925 0.392193 ATTTGCCGAGAGAGCACTGG 60.392 55.000 0.00 0.00 40.69 4.00
753 927 0.459237 CGATTTGCCGAGAGAGCACT 60.459 55.000 0.00 0.00 40.69 4.40
754 928 0.737715 ACGATTTGCCGAGAGAGCAC 60.738 55.000 0.00 0.00 40.69 4.40
755 929 0.458543 GACGATTTGCCGAGAGAGCA 60.459 55.000 0.00 0.00 38.81 4.26
795 972 2.808206 GGTACGGGAGCCAGATGGG 61.808 68.421 0.12 0.00 40.85 4.00
799 976 1.684734 GGAAGGTACGGGAGCCAGA 60.685 63.158 0.00 0.00 0.00 3.86
867 1048 3.492102 ATAACTGTGCTGTGGACTGTT 57.508 42.857 15.58 15.58 38.54 3.16
872 1053 4.968259 ACAAGTAATAACTGTGCTGTGGA 58.032 39.130 0.00 0.00 35.62 4.02
897 1082 5.462405 GTCACTGGACTACAAGTCTACAAG 58.538 45.833 6.99 3.51 44.46 3.16
898 1083 4.280174 GGTCACTGGACTACAAGTCTACAA 59.720 45.833 6.99 0.00 44.46 2.41
899 1084 3.825014 GGTCACTGGACTACAAGTCTACA 59.175 47.826 6.99 0.00 44.46 2.74
900 1085 3.825014 TGGTCACTGGACTACAAGTCTAC 59.175 47.826 6.99 0.00 44.46 2.59
901 1086 4.108501 TGGTCACTGGACTACAAGTCTA 57.891 45.455 6.99 0.28 44.46 2.59
902 1087 2.958818 TGGTCACTGGACTACAAGTCT 58.041 47.619 6.99 0.00 44.46 3.24
903 1088 3.069729 AGTTGGTCACTGGACTACAAGTC 59.930 47.826 0.00 0.00 44.32 3.01
925 1111 3.363970 GCGCGAAGAAGTTGATTTTCTCA 60.364 43.478 12.10 0.00 33.92 3.27
926 1112 3.156753 GCGCGAAGAAGTTGATTTTCTC 58.843 45.455 12.10 0.00 33.92 2.87
1015 2647 1.111277 GGCTTGGTGGTTTCACAGTT 58.889 50.000 0.00 0.00 45.32 3.16
1018 2650 1.098712 GTCGGCTTGGTGGTTTCACA 61.099 55.000 0.00 0.00 45.32 3.58
1028 2661 2.016393 TATGCTCTCGGTCGGCTTGG 62.016 60.000 0.00 0.00 0.00 3.61
1053 2686 1.503542 CTGCGCTGCCTTTGGTAAG 59.496 57.895 9.73 0.00 0.00 2.34
1054 2687 2.625823 GCTGCGCTGCCTTTGGTAA 61.626 57.895 26.86 0.00 0.00 2.85
1055 2688 3.055719 GCTGCGCTGCCTTTGGTA 61.056 61.111 26.86 0.00 0.00 3.25
1079 2712 1.152440 AAATGGACCCGGCCAACAA 60.152 52.632 2.24 0.00 42.16 2.83
1081 2714 0.898326 AAGAAATGGACCCGGCCAAC 60.898 55.000 2.24 0.98 42.16 3.77
1135 2773 4.617520 ACCACGACATGCGGTGCA 62.618 61.111 10.41 0.00 46.49 4.57
1407 3045 4.436998 GCTCCTGTCCGTGACCCG 62.437 72.222 2.23 0.00 0.00 5.28
1411 3049 2.997315 CCAGGCTCCTGTCCGTGA 60.997 66.667 14.27 0.00 42.15 4.35
1505 3143 2.893398 CCAGTGACCCGGTCTAGC 59.107 66.667 18.54 8.81 33.15 3.42
1620 3258 3.075005 CAGGTGGGGATCGACGGT 61.075 66.667 0.00 0.00 0.00 4.83
1653 3291 4.139234 GACGTACCACCCGGGAGC 62.139 72.222 32.02 10.87 41.15 4.70
1654 3292 3.455469 GGACGTACCACCCGGGAG 61.455 72.222 32.02 21.47 41.15 4.30
1707 3345 0.984230 TTGCAAGGGAGGAAGACGAT 59.016 50.000 0.00 0.00 0.00 3.73
1966 3604 3.758973 TTCGGTTTGACTGCCGCCA 62.759 57.895 0.00 0.00 46.79 5.69
2024 3662 2.355837 TTCTGTGCGTCGACAGCC 60.356 61.111 23.01 16.60 42.74 4.85
2027 3665 1.661509 CTGCTTCTGTGCGTCGACA 60.662 57.895 17.16 0.00 35.36 4.35
2328 3975 1.003355 CCACCTCGTCCTGCATTGT 60.003 57.895 0.00 0.00 0.00 2.71
2423 4070 4.002506 ATGCTCGACGCCACCACA 62.003 61.111 4.73 0.00 38.05 4.17
2541 4188 1.228063 GGGTGGCGCTCATCATCAT 60.228 57.895 7.64 0.00 0.00 2.45
2650 4315 2.459442 GCAGTCACGAGGAGCATGC 61.459 63.158 10.51 10.51 0.00 4.06
2651 4316 0.461516 ATGCAGTCACGAGGAGCATG 60.462 55.000 0.00 0.00 43.60 4.06
2652 4317 0.461516 CATGCAGTCACGAGGAGCAT 60.462 55.000 0.00 0.00 45.92 3.79
2653 4318 1.079612 CATGCAGTCACGAGGAGCA 60.080 57.895 0.00 0.00 39.79 4.26
2654 4319 2.459442 GCATGCAGTCACGAGGAGC 61.459 63.158 14.21 0.00 0.00 4.70
2655 4320 1.812922 GGCATGCAGTCACGAGGAG 60.813 63.158 21.36 0.00 0.00 3.69
2656 4321 2.265739 GGCATGCAGTCACGAGGA 59.734 61.111 21.36 0.00 0.00 3.71
2657 4322 2.046988 TGGCATGCAGTCACGAGG 60.047 61.111 21.36 0.00 0.00 4.63
2658 4323 3.171987 GTGGCATGCAGTCACGAG 58.828 61.111 21.36 0.00 43.90 4.18
2662 4327 2.669229 CCACGTGGCATGCAGTCA 60.669 61.111 24.02 5.42 0.00 3.41
2827 4548 4.985538 TCCACAAAGGCTGAGAATTACTT 58.014 39.130 0.00 0.00 37.29 2.24
2884 4608 4.925786 CGTATGACGCGCTCAAAC 57.074 55.556 5.73 0.00 33.65 2.93
2918 4642 3.641986 GCGTGCGGTCGGTCAAAA 61.642 61.111 0.00 0.00 0.00 2.44
3022 4761 2.142357 CTGTCAAGTCCAGACGCGGA 62.142 60.000 12.47 0.00 38.83 5.54
3102 4887 3.491652 GCGCCGCAAGAGGAGTTC 61.492 66.667 3.15 0.00 43.02 3.01
3159 4951 2.084101 GCGTGTACATGCGACGACA 61.084 57.895 23.44 0.00 35.05 4.35
3160 4952 2.687436 GCGTGTACATGCGACGAC 59.313 61.111 23.44 3.40 35.05 4.34
3165 5002 2.954020 ATCGGAGGCGTGTACATGCG 62.954 60.000 28.82 16.36 44.00 4.73
3166 5003 1.215655 GATCGGAGGCGTGTACATGC 61.216 60.000 28.38 28.38 42.40 4.06
3168 5005 1.099295 TCGATCGGAGGCGTGTACAT 61.099 55.000 16.41 0.00 0.00 2.29
3274 5131 0.462789 GTAACGTCGGTCCCATCCAT 59.537 55.000 0.00 0.00 0.00 3.41
3275 5132 1.892338 GTAACGTCGGTCCCATCCA 59.108 57.895 0.00 0.00 0.00 3.41
3276 5133 1.226773 CGTAACGTCGGTCCCATCC 60.227 63.158 0.00 0.00 0.00 3.51
3277 5134 1.875364 GCGTAACGTCGGTCCCATC 60.875 63.158 0.00 0.00 0.00 3.51
3370 5230 1.192534 GTGAGTTCACGAAAAGGCGAG 59.807 52.381 0.00 0.00 37.10 5.03
3371 5231 1.214367 GTGAGTTCACGAAAAGGCGA 58.786 50.000 0.00 0.00 37.10 5.54
3480 5404 4.161754 ACAAGTATTTTAGGACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3481 5405 4.098894 ACAAGTATTTTAGGACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3482 5406 4.439968 GACAAGTATTTTAGGACGGAGGG 58.560 47.826 0.00 0.00 0.00 4.30
3483 5407 4.110482 CGACAAGTATTTTAGGACGGAGG 58.890 47.826 0.00 0.00 0.00 4.30
3484 5408 4.990257 TCGACAAGTATTTTAGGACGGAG 58.010 43.478 0.00 0.00 0.00 4.63
3485 5409 5.183713 TCTTCGACAAGTATTTTAGGACGGA 59.816 40.000 0.00 0.00 0.00 4.69
3486 5410 5.404946 TCTTCGACAAGTATTTTAGGACGG 58.595 41.667 0.00 0.00 0.00 4.79
3487 5411 6.939551 TTCTTCGACAAGTATTTTAGGACG 57.060 37.500 0.00 0.00 0.00 4.79
3488 5412 7.692705 GCATTTCTTCGACAAGTATTTTAGGAC 59.307 37.037 0.00 0.00 0.00 3.85
3489 5413 7.389330 TGCATTTCTTCGACAAGTATTTTAGGA 59.611 33.333 0.00 0.00 0.00 2.94
3490 5414 7.526608 TGCATTTCTTCGACAAGTATTTTAGG 58.473 34.615 0.00 0.00 0.00 2.69
3493 5417 9.906660 TTTATGCATTTCTTCGACAAGTATTTT 57.093 25.926 3.54 0.00 0.00 1.82
3494 5418 9.906660 TTTTATGCATTTCTTCGACAAGTATTT 57.093 25.926 3.54 0.00 0.00 1.40
3495 5419 9.906660 TTTTTATGCATTTCTTCGACAAGTATT 57.093 25.926 3.54 0.00 0.00 1.89
3543 5467 9.126151 CGGAGGTATGAATGTATCTAGATGTAT 57.874 37.037 15.79 6.61 0.00 2.29
3544 5468 8.326529 TCGGAGGTATGAATGTATCTAGATGTA 58.673 37.037 15.79 4.44 0.00 2.29
3545 5469 7.121463 GTCGGAGGTATGAATGTATCTAGATGT 59.879 40.741 15.79 0.00 0.00 3.06
3546 5470 7.476667 GTCGGAGGTATGAATGTATCTAGATG 58.523 42.308 15.79 0.00 0.00 2.90
3547 5471 6.316640 CGTCGGAGGTATGAATGTATCTAGAT 59.683 42.308 10.73 10.73 0.00 1.98
3548 5472 5.642491 CGTCGGAGGTATGAATGTATCTAGA 59.358 44.000 0.00 0.00 0.00 2.43
3549 5473 5.642491 TCGTCGGAGGTATGAATGTATCTAG 59.358 44.000 0.00 0.00 0.00 2.43
3550 5474 5.554070 TCGTCGGAGGTATGAATGTATCTA 58.446 41.667 0.00 0.00 0.00 1.98
3551 5475 4.395625 TCGTCGGAGGTATGAATGTATCT 58.604 43.478 0.00 0.00 0.00 1.98
3552 5476 4.761235 TCGTCGGAGGTATGAATGTATC 57.239 45.455 0.00 0.00 0.00 2.24
3553 5477 5.723672 ATTCGTCGGAGGTATGAATGTAT 57.276 39.130 0.00 0.00 0.00 2.29
3554 5478 6.829229 ATATTCGTCGGAGGTATGAATGTA 57.171 37.500 0.00 0.00 32.07 2.29
3555 5479 5.723672 ATATTCGTCGGAGGTATGAATGT 57.276 39.130 0.00 0.00 32.07 2.71
3556 5480 6.090898 GGAAATATTCGTCGGAGGTATGAATG 59.909 42.308 0.00 0.00 32.07 2.67
3557 5481 6.164176 GGAAATATTCGTCGGAGGTATGAAT 58.836 40.000 0.00 0.00 34.03 2.57
3558 5482 5.535333 GGAAATATTCGTCGGAGGTATGAA 58.465 41.667 0.00 0.00 0.00 2.57
3559 5483 4.320714 CGGAAATATTCGTCGGAGGTATGA 60.321 45.833 0.00 0.00 0.00 2.15
3560 5484 3.918591 CGGAAATATTCGTCGGAGGTATG 59.081 47.826 0.00 0.00 0.00 2.39
3561 5485 3.057033 CCGGAAATATTCGTCGGAGGTAT 60.057 47.826 14.89 0.00 42.94 2.73
3562 5486 2.294233 CCGGAAATATTCGTCGGAGGTA 59.706 50.000 14.89 0.00 42.94 3.08
3563 5487 1.068127 CCGGAAATATTCGTCGGAGGT 59.932 52.381 14.89 0.00 42.94 3.85
3564 5488 1.338973 TCCGGAAATATTCGTCGGAGG 59.661 52.381 17.28 5.94 43.84 4.30
3565 5489 2.787601 TCCGGAAATATTCGTCGGAG 57.212 50.000 17.28 1.97 43.84 4.63
3566 5490 1.268692 CGTCCGGAAATATTCGTCGGA 60.269 52.381 5.23 17.28 46.06 4.55
3567 5491 1.126079 CGTCCGGAAATATTCGTCGG 58.874 55.000 5.23 14.22 41.80 4.79
3568 5492 1.126079 CCGTCCGGAAATATTCGTCG 58.874 55.000 5.23 1.25 37.50 5.12
3569 5493 2.391879 CTCCGTCCGGAAATATTCGTC 58.608 52.381 5.23 0.00 44.66 4.20
3570 5494 1.068127 CCTCCGTCCGGAAATATTCGT 59.932 52.381 5.23 0.00 44.66 3.85
3571 5495 1.604693 CCCTCCGTCCGGAAATATTCG 60.605 57.143 5.23 3.90 44.66 3.34
3572 5496 1.690352 TCCCTCCGTCCGGAAATATTC 59.310 52.381 5.23 0.00 44.66 1.75
3573 5497 1.692519 CTCCCTCCGTCCGGAAATATT 59.307 52.381 5.23 0.00 44.66 1.28
3574 5498 1.339097 CTCCCTCCGTCCGGAAATAT 58.661 55.000 5.23 0.00 44.66 1.28
3575 5499 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3576 5500 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3577 5501 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
3578 5502 0.967380 GTTACTCCCTCCGTCCGGAA 60.967 60.000 5.23 0.00 44.66 4.30
3579 5503 1.379044 GTTACTCCCTCCGTCCGGA 60.379 63.158 0.00 0.00 42.90 5.14
3580 5504 0.107017 TAGTTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
3581 5505 1.755179 TTAGTTACTCCCTCCGTCCG 58.245 55.000 0.00 0.00 0.00 4.79
3582 5506 3.678252 GCTTTTAGTTACTCCCTCCGTCC 60.678 52.174 0.00 0.00 0.00 4.79
3583 5507 3.056322 TGCTTTTAGTTACTCCCTCCGTC 60.056 47.826 0.00 0.00 0.00 4.79
3584 5508 2.901839 TGCTTTTAGTTACTCCCTCCGT 59.098 45.455 0.00 0.00 0.00 4.69
3585 5509 3.259902 GTGCTTTTAGTTACTCCCTCCG 58.740 50.000 0.00 0.00 0.00 4.63
3586 5510 4.254492 CTGTGCTTTTAGTTACTCCCTCC 58.746 47.826 0.00 0.00 0.00 4.30
3587 5511 4.691216 CACTGTGCTTTTAGTTACTCCCTC 59.309 45.833 0.00 0.00 0.00 4.30
3588 5512 4.505039 CCACTGTGCTTTTAGTTACTCCCT 60.505 45.833 1.29 0.00 0.00 4.20
3589 5513 3.751698 CCACTGTGCTTTTAGTTACTCCC 59.248 47.826 1.29 0.00 0.00 4.30
3590 5514 3.188667 GCCACTGTGCTTTTAGTTACTCC 59.811 47.826 1.29 0.00 0.00 3.85
3591 5515 3.120649 CGCCACTGTGCTTTTAGTTACTC 60.121 47.826 1.29 0.00 0.00 2.59
3592 5516 2.806244 CGCCACTGTGCTTTTAGTTACT 59.194 45.455 1.29 0.00 0.00 2.24
3593 5517 2.095919 CCGCCACTGTGCTTTTAGTTAC 60.096 50.000 1.29 0.00 0.00 2.50
3594 5518 2.147958 CCGCCACTGTGCTTTTAGTTA 58.852 47.619 1.29 0.00 0.00 2.24
3595 5519 0.951558 CCGCCACTGTGCTTTTAGTT 59.048 50.000 1.29 0.00 0.00 2.24
3596 5520 1.515521 GCCGCCACTGTGCTTTTAGT 61.516 55.000 1.29 0.00 0.00 2.24
3597 5521 1.210155 GCCGCCACTGTGCTTTTAG 59.790 57.895 1.29 0.00 0.00 1.85
3598 5522 1.514678 CTGCCGCCACTGTGCTTTTA 61.515 55.000 1.29 0.00 0.00 1.52
3599 5523 2.832661 TGCCGCCACTGTGCTTTT 60.833 55.556 1.29 0.00 0.00 2.27
3600 5524 2.674563 TACTGCCGCCACTGTGCTTT 62.675 55.000 1.29 0.00 0.00 3.51
3601 5525 3.177194 TACTGCCGCCACTGTGCTT 62.177 57.895 1.29 0.00 0.00 3.91
3602 5526 3.596066 CTACTGCCGCCACTGTGCT 62.596 63.158 1.29 0.00 0.00 4.40
3603 5527 3.121030 CTACTGCCGCCACTGTGC 61.121 66.667 1.29 0.00 0.00 4.57
3604 5528 2.029288 CACTACTGCCGCCACTGTG 61.029 63.158 0.00 0.00 0.00 3.66
3605 5529 1.544825 ATCACTACTGCCGCCACTGT 61.545 55.000 0.00 0.00 0.00 3.55
3606 5530 0.807667 GATCACTACTGCCGCCACTG 60.808 60.000 0.00 0.00 0.00 3.66
3607 5531 1.517832 GATCACTACTGCCGCCACT 59.482 57.895 0.00 0.00 0.00 4.00
3608 5532 1.878522 CGATCACTACTGCCGCCAC 60.879 63.158 0.00 0.00 0.00 5.01
3609 5533 2.279502 GACGATCACTACTGCCGCCA 62.280 60.000 0.00 0.00 0.00 5.69
3610 5534 1.589196 GACGATCACTACTGCCGCC 60.589 63.158 0.00 0.00 0.00 6.13
3611 5535 0.867753 CAGACGATCACTACTGCCGC 60.868 60.000 0.00 0.00 0.00 6.53
3612 5536 0.248661 CCAGACGATCACTACTGCCG 60.249 60.000 0.00 0.00 0.00 5.69
3613 5537 0.818296 ACCAGACGATCACTACTGCC 59.182 55.000 0.00 0.00 0.00 4.85
3614 5538 1.472878 TGACCAGACGATCACTACTGC 59.527 52.381 0.00 0.00 0.00 4.40
3615 5539 3.378427 TCATGACCAGACGATCACTACTG 59.622 47.826 0.00 0.00 0.00 2.74
3616 5540 3.621558 TCATGACCAGACGATCACTACT 58.378 45.455 0.00 0.00 0.00 2.57
3617 5541 4.371855 TTCATGACCAGACGATCACTAC 57.628 45.455 0.00 0.00 0.00 2.73
3618 5542 5.360999 AGATTTCATGACCAGACGATCACTA 59.639 40.000 0.00 0.00 0.00 2.74
3619 5543 3.961480 TTTCATGACCAGACGATCACT 57.039 42.857 0.00 0.00 0.00 3.41
3620 5544 4.437239 AGATTTCATGACCAGACGATCAC 58.563 43.478 0.00 0.00 0.00 3.06
3621 5545 4.686972 GAGATTTCATGACCAGACGATCA 58.313 43.478 0.00 0.00 0.00 2.92
3622 5546 3.733224 CGAGATTTCATGACCAGACGATC 59.267 47.826 0.00 0.00 0.00 3.69
3623 5547 3.381590 TCGAGATTTCATGACCAGACGAT 59.618 43.478 0.00 0.00 0.00 3.73
3624 5548 2.752903 TCGAGATTTCATGACCAGACGA 59.247 45.455 0.00 2.12 0.00 4.20
3625 5549 3.150848 TCGAGATTTCATGACCAGACG 57.849 47.619 0.00 0.00 0.00 4.18
3626 5550 5.592054 TGTATCGAGATTTCATGACCAGAC 58.408 41.667 0.00 0.00 0.00 3.51
3627 5551 5.852282 TGTATCGAGATTTCATGACCAGA 57.148 39.130 0.00 0.00 0.00 3.86
3628 5552 6.045318 AGTTGTATCGAGATTTCATGACCAG 58.955 40.000 0.00 0.00 0.00 4.00
3629 5553 5.977635 AGTTGTATCGAGATTTCATGACCA 58.022 37.500 0.00 0.00 0.00 4.02
3630 5554 6.758886 AGAAGTTGTATCGAGATTTCATGACC 59.241 38.462 0.00 0.00 0.00 4.02
3631 5555 7.763172 AGAAGTTGTATCGAGATTTCATGAC 57.237 36.000 0.00 0.00 0.00 3.06
3632 5556 9.684448 GATAGAAGTTGTATCGAGATTTCATGA 57.316 33.333 4.42 0.00 0.00 3.07
3633 5557 9.468532 TGATAGAAGTTGTATCGAGATTTCATG 57.531 33.333 13.62 0.00 30.59 3.07
3637 5561 9.613957 CGTATGATAGAAGTTGTATCGAGATTT 57.386 33.333 13.62 0.43 30.59 2.17
3638 5562 9.000486 TCGTATGATAGAAGTTGTATCGAGATT 58.000 33.333 13.62 1.80 30.59 2.40
3639 5563 8.549338 TCGTATGATAGAAGTTGTATCGAGAT 57.451 34.615 13.62 6.20 30.59 2.75
3640 5564 7.656542 ACTCGTATGATAGAAGTTGTATCGAGA 59.343 37.037 23.81 15.24 41.10 4.04
3641 5565 7.798801 ACTCGTATGATAGAAGTTGTATCGAG 58.201 38.462 19.03 19.03 43.15 4.04
3642 5566 7.725818 ACTCGTATGATAGAAGTTGTATCGA 57.274 36.000 13.62 8.00 30.59 3.59
3647 5571 9.737427 CTCAAATACTCGTATGATAGAAGTTGT 57.263 33.333 0.00 0.00 0.00 3.32
3648 5572 9.952188 TCTCAAATACTCGTATGATAGAAGTTG 57.048 33.333 0.00 0.00 0.00 3.16
3651 5575 9.071221 GCATCTCAAATACTCGTATGATAGAAG 57.929 37.037 0.00 0.00 0.00 2.85
3652 5576 8.029522 GGCATCTCAAATACTCGTATGATAGAA 58.970 37.037 0.00 0.00 0.00 2.10
3653 5577 7.394641 AGGCATCTCAAATACTCGTATGATAGA 59.605 37.037 0.00 0.00 0.00 1.98
3654 5578 7.542890 AGGCATCTCAAATACTCGTATGATAG 58.457 38.462 0.00 0.00 0.00 2.08
3655 5579 7.468141 AGGCATCTCAAATACTCGTATGATA 57.532 36.000 0.00 0.00 0.00 2.15
3656 5580 6.352016 AGGCATCTCAAATACTCGTATGAT 57.648 37.500 0.00 0.00 0.00 2.45
3657 5581 5.791336 AGGCATCTCAAATACTCGTATGA 57.209 39.130 0.00 0.00 0.00 2.15
3658 5582 5.755375 ACAAGGCATCTCAAATACTCGTATG 59.245 40.000 0.00 0.00 0.00 2.39
3659 5583 5.755375 CACAAGGCATCTCAAATACTCGTAT 59.245 40.000 0.00 0.00 0.00 3.06
3660 5584 5.109210 CACAAGGCATCTCAAATACTCGTA 58.891 41.667 0.00 0.00 0.00 3.43
3661 5585 3.935203 CACAAGGCATCTCAAATACTCGT 59.065 43.478 0.00 0.00 0.00 4.18
3662 5586 3.935203 ACACAAGGCATCTCAAATACTCG 59.065 43.478 0.00 0.00 0.00 4.18
3663 5587 5.886960 AACACAAGGCATCTCAAATACTC 57.113 39.130 0.00 0.00 0.00 2.59
3664 5588 7.759489 TTAAACACAAGGCATCTCAAATACT 57.241 32.000 0.00 0.00 0.00 2.12
3667 5591 8.034804 GGTTATTAAACACAAGGCATCTCAAAT 58.965 33.333 0.00 0.00 37.34 2.32
3668 5592 7.232534 AGGTTATTAAACACAAGGCATCTCAAA 59.767 33.333 0.00 0.00 37.34 2.69
3669 5593 6.719370 AGGTTATTAAACACAAGGCATCTCAA 59.281 34.615 0.00 0.00 37.34 3.02
3670 5594 6.245408 AGGTTATTAAACACAAGGCATCTCA 58.755 36.000 0.00 0.00 37.34 3.27
3671 5595 6.759497 AGGTTATTAAACACAAGGCATCTC 57.241 37.500 0.00 0.00 37.34 2.75
3672 5596 7.336931 CACTAGGTTATTAAACACAAGGCATCT 59.663 37.037 0.00 0.00 37.34 2.90
3673 5597 7.472543 CACTAGGTTATTAAACACAAGGCATC 58.527 38.462 0.00 0.00 37.34 3.91
3674 5598 6.127730 GCACTAGGTTATTAAACACAAGGCAT 60.128 38.462 0.00 0.00 37.34 4.40
3675 5599 5.182380 GCACTAGGTTATTAAACACAAGGCA 59.818 40.000 0.00 0.00 37.34 4.75
3676 5600 5.392703 GGCACTAGGTTATTAAACACAAGGC 60.393 44.000 0.00 0.00 37.34 4.35
3677 5601 5.944007 AGGCACTAGGTTATTAAACACAAGG 59.056 40.000 0.00 0.00 36.02 3.61
3678 5602 8.556213 TTAGGCACTAGGTTATTAAACACAAG 57.444 34.615 0.00 0.00 44.25 3.16
3679 5603 9.169592 GATTAGGCACTAGGTTATTAAACACAA 57.830 33.333 0.00 0.00 44.25 3.33
3680 5604 7.493320 CGATTAGGCACTAGGTTATTAAACACA 59.507 37.037 0.00 0.00 44.25 3.72
3681 5605 7.707893 TCGATTAGGCACTAGGTTATTAAACAC 59.292 37.037 0.00 0.00 44.25 3.32
3682 5606 7.784037 TCGATTAGGCACTAGGTTATTAAACA 58.216 34.615 0.00 0.00 44.25 2.83
3683 5607 8.828688 ATCGATTAGGCACTAGGTTATTAAAC 57.171 34.615 0.00 0.00 44.25 2.01
3685 5609 9.524496 TCTATCGATTAGGCACTAGGTTATTAA 57.476 33.333 1.71 0.00 44.25 1.40
3686 5610 9.524496 TTCTATCGATTAGGCACTAGGTTATTA 57.476 33.333 1.71 0.00 44.25 0.98
3687 5611 8.418597 TTCTATCGATTAGGCACTAGGTTATT 57.581 34.615 1.71 0.00 44.25 1.40
3688 5612 8.596781 ATTCTATCGATTAGGCACTAGGTTAT 57.403 34.615 1.71 0.00 44.25 1.89
3689 5613 8.418597 AATTCTATCGATTAGGCACTAGGTTA 57.581 34.615 1.71 0.00 44.25 2.85
3690 5614 6.919775 ATTCTATCGATTAGGCACTAGGTT 57.080 37.500 1.71 0.00 44.25 3.50
3691 5615 6.919775 AATTCTATCGATTAGGCACTAGGT 57.080 37.500 1.71 0.00 44.25 3.08
3692 5616 7.155328 ACAAATTCTATCGATTAGGCACTAGG 58.845 38.462 1.71 0.00 44.25 3.02
3693 5617 8.491152 CAACAAATTCTATCGATTAGGCACTAG 58.509 37.037 1.71 0.00 44.25 2.57
3694 5618 7.985184 ACAACAAATTCTATCGATTAGGCACTA 59.015 33.333 1.71 0.00 41.75 2.74
3695 5619 6.823689 ACAACAAATTCTATCGATTAGGCACT 59.176 34.615 1.71 0.00 46.37 4.40
3696 5620 7.016361 ACAACAAATTCTATCGATTAGGCAC 57.984 36.000 1.71 0.00 0.00 5.01
3697 5621 6.821160 TGACAACAAATTCTATCGATTAGGCA 59.179 34.615 1.71 0.00 0.00 4.75
3698 5622 7.224753 TCTGACAACAAATTCTATCGATTAGGC 59.775 37.037 1.71 0.00 0.00 3.93
3699 5623 8.648557 TCTGACAACAAATTCTATCGATTAGG 57.351 34.615 1.71 0.00 0.00 2.69
3704 5628 9.869757 TCTTTATCTGACAACAAATTCTATCGA 57.130 29.630 0.00 0.00 0.00 3.59
3709 5633 8.457261 GCATCTCTTTATCTGACAACAAATTCT 58.543 33.333 0.00 0.00 0.00 2.40
3710 5634 8.457261 AGCATCTCTTTATCTGACAACAAATTC 58.543 33.333 0.00 0.00 0.00 2.17
3711 5635 8.242053 CAGCATCTCTTTATCTGACAACAAATT 58.758 33.333 0.00 0.00 0.00 1.82
3712 5636 7.609146 TCAGCATCTCTTTATCTGACAACAAAT 59.391 33.333 0.00 0.00 0.00 2.32
3713 5637 6.936335 TCAGCATCTCTTTATCTGACAACAAA 59.064 34.615 0.00 0.00 0.00 2.83
3714 5638 6.466812 TCAGCATCTCTTTATCTGACAACAA 58.533 36.000 0.00 0.00 0.00 2.83
3715 5639 6.041423 TCAGCATCTCTTTATCTGACAACA 57.959 37.500 0.00 0.00 0.00 3.33
3716 5640 8.140628 TCTATCAGCATCTCTTTATCTGACAAC 58.859 37.037 0.00 0.00 36.72 3.32
3717 5641 8.242729 TCTATCAGCATCTCTTTATCTGACAA 57.757 34.615 0.00 0.00 36.72 3.18
3718 5642 7.830099 TCTATCAGCATCTCTTTATCTGACA 57.170 36.000 0.00 0.00 36.72 3.58
3719 5643 9.539825 TTTTCTATCAGCATCTCTTTATCTGAC 57.460 33.333 0.00 0.00 36.72 3.51
3743 5667 8.872845 CAAAAGTTTATCACAGCAACTCTTTTT 58.127 29.630 0.00 0.00 32.70 1.94
3744 5668 8.034804 ACAAAAGTTTATCACAGCAACTCTTTT 58.965 29.630 0.00 0.00 34.43 2.27
3745 5669 7.547227 ACAAAAGTTTATCACAGCAACTCTTT 58.453 30.769 0.00 0.00 30.22 2.52
3746 5670 7.100458 ACAAAAGTTTATCACAGCAACTCTT 57.900 32.000 0.00 0.00 30.22 2.85
3747 5671 6.699575 ACAAAAGTTTATCACAGCAACTCT 57.300 33.333 0.00 0.00 30.22 3.24
3748 5672 8.850454 TTTACAAAAGTTTATCACAGCAACTC 57.150 30.769 0.00 0.00 30.22 3.01
3749 5673 9.301153 CTTTTACAAAAGTTTATCACAGCAACT 57.699 29.630 6.33 0.00 40.31 3.16
3750 5674 9.296400 TCTTTTACAAAAGTTTATCACAGCAAC 57.704 29.630 12.80 0.00 44.37 4.17
3752 5676 9.677567 GATCTTTTACAAAAGTTTATCACAGCA 57.322 29.630 12.80 0.00 44.37 4.41
3753 5677 9.129209 GGATCTTTTACAAAAGTTTATCACAGC 57.871 33.333 12.80 0.00 44.37 4.40
3754 5678 9.329913 CGGATCTTTTACAAAAGTTTATCACAG 57.670 33.333 12.80 3.54 44.37 3.66
3755 5679 9.058174 TCGGATCTTTTACAAAAGTTTATCACA 57.942 29.630 12.80 0.17 44.37 3.58
3758 5682 9.717892 GGATCGGATCTTTTACAAAAGTTTATC 57.282 33.333 16.96 9.19 44.37 1.75
3759 5683 9.462606 AGGATCGGATCTTTTACAAAAGTTTAT 57.537 29.630 16.96 1.70 44.37 1.40
3760 5684 8.857694 AGGATCGGATCTTTTACAAAAGTTTA 57.142 30.769 16.96 0.00 44.37 2.01
3761 5685 7.761038 AGGATCGGATCTTTTACAAAAGTTT 57.239 32.000 16.96 4.08 44.37 2.66
3762 5686 7.761038 AAGGATCGGATCTTTTACAAAAGTT 57.239 32.000 16.96 6.13 44.37 2.66
3763 5687 7.761038 AAAGGATCGGATCTTTTACAAAAGT 57.239 32.000 22.03 0.94 44.37 2.66
3764 5688 8.296713 TGAAAAGGATCGGATCTTTTACAAAAG 58.703 33.333 23.16 7.93 45.17 2.27
3765 5689 8.172352 TGAAAAGGATCGGATCTTTTACAAAA 57.828 30.769 23.16 8.99 41.52 2.44
3766 5690 7.753309 TGAAAAGGATCGGATCTTTTACAAA 57.247 32.000 23.16 10.35 41.52 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.