Multiple sequence alignment - TraesCS3B01G284700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G284700 chr3B 100.000 2439 0 0 2351 4789 456109318 456111756 0.000000e+00 4505.0
1 TraesCS3B01G284700 chr3B 100.000 1991 0 0 1 1991 456106968 456108958 0.000000e+00 3677.0
2 TraesCS3B01G284700 chr3B 96.334 1091 21 6 912 1990 463235549 463234466 0.000000e+00 1775.0
3 TraesCS3B01G284700 chr3B 94.580 1107 23 15 3280 4378 463233223 463232146 0.000000e+00 1677.0
4 TraesCS3B01G284700 chr3B 83.622 751 76 15 43 767 744513857 744513128 0.000000e+00 662.0
5 TraesCS3B01G284700 chr3B 92.602 392 18 5 2852 3238 463233607 463233222 1.950000e-153 553.0
6 TraesCS3B01G284700 chr3B 88.602 465 29 5 43 483 240266054 240266518 1.170000e-150 544.0
7 TraesCS3B01G284700 chr3B 96.018 226 9 0 2587 2812 166832203 166832428 7.570000e-98 368.0
8 TraesCS3B01G284700 chr3B 93.173 249 16 1 4442 4689 463229444 463229196 9.790000e-97 364.0
9 TraesCS3B01G284700 chr3B 92.478 226 14 3 543 766 456032788 456032564 2.150000e-83 320.0
10 TraesCS3B01G284700 chr3B 91.703 229 17 2 543 771 622480490 622480716 2.780000e-82 316.0
11 TraesCS3B01G284700 chr3B 90.411 219 19 2 547 764 650021198 650021415 2.180000e-73 287.0
12 TraesCS3B01G284700 chr3B 95.349 43 2 0 766 808 463235750 463235708 8.600000e-08 69.4
13 TraesCS3B01G284700 chr3B 100.000 36 0 0 4712 4747 463229200 463229165 3.090000e-07 67.6
14 TraesCS3B01G284700 chr3A 94.437 1456 45 12 2852 4301 477709804 477708379 0.000000e+00 2207.0
15 TraesCS3B01G284700 chr3A 95.708 932 28 7 987 1917 477711225 477710305 0.000000e+00 1489.0
16 TraesCS3B01G284700 chr3A 93.634 377 19 3 4262 4638 477706128 477705757 4.190000e-155 558.0
17 TraesCS3B01G284700 chr3A 88.184 457 40 3 2854 3310 617792328 617791886 2.540000e-147 532.0
18 TraesCS3B01G284700 chr3A 86.946 429 22 17 4268 4689 474068416 474068817 7.310000e-123 451.0
19 TraesCS3B01G284700 chr3A 94.118 272 8 2 4409 4680 477708164 477707901 1.600000e-109 407.0
20 TraesCS3B01G284700 chr3A 90.102 293 9 2 3956 4248 477707877 477707605 3.520000e-96 363.0
21 TraesCS3B01G284700 chr3A 88.017 242 24 2 2354 2594 477710106 477709869 1.010000e-71 281.0
22 TraesCS3B01G284700 chr3A 96.667 150 5 0 4636 4785 477705490 477705341 2.860000e-62 250.0
23 TraesCS3B01G284700 chr3A 86.667 105 14 0 2490 2594 745022796 745022900 3.030000e-22 117.0
24 TraesCS3B01G284700 chr3A 97.015 67 2 0 4719 4785 474068820 474068886 3.920000e-21 113.0
25 TraesCS3B01G284700 chr3D 94.795 1172 35 5 766 1917 355173330 355174495 0.000000e+00 1803.0
26 TraesCS3B01G284700 chr3D 93.722 669 21 12 3114 3773 355175292 355175948 0.000000e+00 983.0
27 TraesCS3B01G284700 chr3D 92.769 567 22 5 3777 4342 355176049 355176597 0.000000e+00 802.0
28 TraesCS3B01G284700 chr3D 93.382 272 13 1 4424 4695 355176671 355176937 9.660000e-107 398.0
29 TraesCS3B01G284700 chr3D 96.833 221 7 0 2591 2811 554681774 554681554 2.110000e-98 370.0
30 TraesCS3B01G284700 chr3D 88.843 242 22 2 2354 2594 355174694 355174931 4.690000e-75 292.0
31 TraesCS3B01G284700 chr3D 84.436 257 35 5 515 768 143611470 143611216 1.030000e-61 248.0
32 TraesCS3B01G284700 chr3D 93.671 79 4 1 4323 4401 355176604 355176681 3.030000e-22 117.0
33 TraesCS3B01G284700 chr3D 98.276 58 1 0 4728 4785 355176940 355176997 8.480000e-18 102.0
34 TraesCS3B01G284700 chr4D 87.989 716 52 15 43 746 9728951 9728258 0.000000e+00 815.0
35 TraesCS3B01G284700 chr5B 84.450 746 62 18 43 762 668812515 668813232 0.000000e+00 686.0
36 TraesCS3B01G284700 chr5B 89.498 219 20 3 547 764 710871907 710872123 1.700000e-69 274.0
37 TraesCS3B01G284700 chr1B 83.311 749 85 17 43 764 59637641 59636906 0.000000e+00 654.0
38 TraesCS3B01G284700 chr1B 85.008 627 67 13 143 764 342029049 342028445 3.170000e-171 612.0
39 TraesCS3B01G284700 chr7B 85.855 608 75 6 151 754 709840175 709839575 1.880000e-178 636.0
40 TraesCS3B01G284700 chr7B 87.069 464 35 11 43 483 417609133 417609594 7.160000e-138 501.0
41 TraesCS3B01G284700 chr7B 96.861 223 7 0 2592 2814 301590883 301591105 1.630000e-99 374.0
42 TraesCS3B01G284700 chr6A 85.251 617 74 13 151 764 352671469 352670867 1.890000e-173 619.0
43 TraesCS3B01G284700 chr6A 91.304 92 8 0 3219 3310 58467396 58467305 5.030000e-25 126.0
44 TraesCS3B01G284700 chr6B 84.652 632 69 17 151 764 126627781 126628402 5.300000e-169 604.0
45 TraesCS3B01G284700 chr6B 88.840 457 37 3 2854 3310 12834151 12833709 2.520000e-152 549.0
46 TraesCS3B01G284700 chr7A 89.059 457 36 3 2854 3310 81683022 81682580 5.420000e-154 555.0
47 TraesCS3B01G284700 chr7A 88.286 461 36 4 2854 3310 16086894 16087340 1.960000e-148 536.0
48 TraesCS3B01G284700 chr7A 88.069 461 37 4 2854 3310 16106178 16106624 9.130000e-147 531.0
49 TraesCS3B01G284700 chr7A 87.939 456 40 4 2854 3309 221166981 221166541 1.530000e-144 523.0
50 TraesCS3B01G284700 chr7A 91.667 228 16 3 541 767 334331572 334331347 3.600000e-81 313.0
51 TraesCS3B01G284700 chr4B 87.965 457 41 3 2854 3310 102792513 102792955 1.180000e-145 527.0
52 TraesCS3B01G284700 chr4B 84.977 426 53 11 343 764 166679153 166679571 5.730000e-114 422.0
53 TraesCS3B01G284700 chr4B 84.491 432 42 6 43 449 577187982 577188413 2.080000e-108 403.0
54 TraesCS3B01G284700 chr4B 91.964 224 15 3 542 764 505261423 505261202 1.290000e-80 311.0
55 TraesCS3B01G284700 chr2A 87.527 465 34 8 43 483 524837365 524837829 2.560000e-142 516.0
56 TraesCS3B01G284700 chr2A 86.686 353 23 10 43 371 610125644 610125292 2.110000e-98 370.0
57 TraesCS3B01G284700 chr2B 87.309 457 44 3 2854 3310 242171848 242172290 1.190000e-140 510.0
58 TraesCS3B01G284700 chr2B 88.839 224 22 3 549 771 113195758 113195979 6.110000e-69 272.0
59 TraesCS3B01G284700 chr5A 94.672 244 10 3 2572 2814 401306928 401306687 4.520000e-100 375.0
60 TraesCS3B01G284700 chr7D 96.861 223 7 0 2591 2813 227049058 227048836 1.630000e-99 374.0
61 TraesCS3B01G284700 chr7D 96.861 223 7 0 2593 2815 578394908 578394686 1.630000e-99 374.0
62 TraesCS3B01G284700 chr7D 96.413 223 8 0 2593 2815 578419758 578419536 7.570000e-98 368.0
63 TraesCS3B01G284700 chr5D 96.847 222 6 1 2593 2813 164651736 164651515 2.110000e-98 370.0
64 TraesCS3B01G284700 chr4A 96.413 223 8 0 2591 2813 738399523 738399301 7.570000e-98 368.0
65 TraesCS3B01G284700 chr6D 96.703 91 3 0 43 133 55696769 55696679 8.300000e-33 152.0
66 TraesCS3B01G284700 chr2D 98.824 85 1 0 43 127 460553506 460553590 8.300000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G284700 chr3B 456106968 456111756 4788 False 4091.000000 4505 100.000000 1 4789 2 chr3B.!!$F5 4788
1 TraesCS3B01G284700 chr3B 463229165 463235750 6585 True 751.000000 1775 95.339667 766 4747 6 chr3B.!!$R3 3981
2 TraesCS3B01G284700 chr3B 744513128 744513857 729 True 662.000000 662 83.622000 43 767 1 chr3B.!!$R2 724
3 TraesCS3B01G284700 chr3A 477705341 477711225 5884 True 793.571429 2207 93.240429 987 4785 7 chr3A.!!$R2 3798
4 TraesCS3B01G284700 chr3D 355173330 355176997 3667 False 642.428571 1803 93.636857 766 4785 7 chr3D.!!$F1 4019
5 TraesCS3B01G284700 chr4D 9728258 9728951 693 True 815.000000 815 87.989000 43 746 1 chr4D.!!$R1 703
6 TraesCS3B01G284700 chr5B 668812515 668813232 717 False 686.000000 686 84.450000 43 762 1 chr5B.!!$F1 719
7 TraesCS3B01G284700 chr1B 59636906 59637641 735 True 654.000000 654 83.311000 43 764 1 chr1B.!!$R1 721
8 TraesCS3B01G284700 chr1B 342028445 342029049 604 True 612.000000 612 85.008000 143 764 1 chr1B.!!$R2 621
9 TraesCS3B01G284700 chr7B 709839575 709840175 600 True 636.000000 636 85.855000 151 754 1 chr7B.!!$R1 603
10 TraesCS3B01G284700 chr6A 352670867 352671469 602 True 619.000000 619 85.251000 151 764 1 chr6A.!!$R2 613
11 TraesCS3B01G284700 chr6B 126627781 126628402 621 False 604.000000 604 84.652000 151 764 1 chr6B.!!$F1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 320 0.173935 CCACACAATGCATTGCGGAT 59.826 50.000 33.94 15.85 41.38 4.18 F
1201 1323 0.458716 CCTCGCCGAAGAAGAAGACC 60.459 60.000 0.00 0.00 0.00 3.85 F
1433 1555 0.826062 GTTTAGTGCCGGGGCTACTA 59.174 55.000 11.55 13.11 42.51 1.82 F
2640 2968 1.137479 TGTGCGTATACCTAGGTTGCC 59.863 52.381 22.11 12.89 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1278 1400 1.001760 TTCCCCCTCCTTCTCCTCG 59.998 63.158 0.00 0.00 0.00 4.63 R
2778 3106 0.036164 TCAGTTTACAGGGCATGCGT 59.964 50.000 12.44 6.78 0.00 5.24 R
2779 3107 0.729116 CTCAGTTTACAGGGCATGCG 59.271 55.000 12.44 0.00 0.00 4.73 R
3809 4300 1.045407 AAACTGTCTACCCAGCACGA 58.955 50.000 0.00 0.00 35.83 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.988819 TCAGTAATTTTGCAACCAAGGC 58.011 40.909 0.00 0.00 31.52 4.35
24 25 3.640967 TCAGTAATTTTGCAACCAAGGCT 59.359 39.130 0.00 0.00 31.52 4.58
25 26 3.742369 CAGTAATTTTGCAACCAAGGCTG 59.258 43.478 0.00 0.14 31.52 4.85
27 28 1.422531 ATTTTGCAACCAAGGCTGGA 58.577 45.000 0.00 0.00 46.92 3.86
28 29 1.198713 TTTTGCAACCAAGGCTGGAA 58.801 45.000 0.00 0.00 46.92 3.53
29 30 1.198713 TTTGCAACCAAGGCTGGAAA 58.801 45.000 0.00 5.26 46.92 3.13
30 31 1.198713 TTGCAACCAAGGCTGGAAAA 58.801 45.000 9.53 0.00 46.92 2.29
31 32 1.422531 TGCAACCAAGGCTGGAAAAT 58.577 45.000 9.53 0.00 46.92 1.82
32 33 1.344114 TGCAACCAAGGCTGGAAAATC 59.656 47.619 9.53 0.00 46.92 2.17
33 34 1.344114 GCAACCAAGGCTGGAAAATCA 59.656 47.619 9.53 0.00 46.92 2.57
34 35 2.867647 GCAACCAAGGCTGGAAAATCAC 60.868 50.000 9.53 0.00 46.92 3.06
35 36 1.247567 ACCAAGGCTGGAAAATCACG 58.752 50.000 9.53 0.00 46.92 4.35
36 37 1.202879 ACCAAGGCTGGAAAATCACGA 60.203 47.619 9.53 0.00 46.92 4.35
37 38 1.200020 CCAAGGCTGGAAAATCACGAC 59.800 52.381 0.00 0.00 46.92 4.34
38 39 1.200020 CAAGGCTGGAAAATCACGACC 59.800 52.381 0.00 0.00 0.00 4.79
39 40 0.400213 AGGCTGGAAAATCACGACCA 59.600 50.000 0.00 0.00 0.00 4.02
40 41 1.202879 AGGCTGGAAAATCACGACCAA 60.203 47.619 0.00 0.00 31.85 3.67
41 42 1.818674 GGCTGGAAAATCACGACCAAT 59.181 47.619 0.00 0.00 31.85 3.16
295 320 0.173935 CCACACAATGCATTGCGGAT 59.826 50.000 33.94 15.85 41.38 4.18
326 351 1.005512 CAACATGACGACGGGGACA 60.006 57.895 0.00 0.00 0.00 4.02
486 514 4.704833 CAGGTGCGACCAGGGGTG 62.705 72.222 7.86 0.00 41.95 4.61
538 591 1.059006 TGCCATTTTGCAAACCCCCT 61.059 50.000 12.39 0.00 38.56 4.79
627 693 1.739562 GACTCGGCCAAGTCAGCAG 60.740 63.158 19.30 0.00 44.20 4.24
660 726 9.179909 ACACAAAATCGTATATATGGACCAAAA 57.820 29.630 0.00 0.00 0.00 2.44
719 785 6.976925 CGGGTATTTTGAAGTAGTGGTACTAG 59.023 42.308 0.00 0.00 38.66 2.57
732 798 1.251251 GTACTAGTGTGTCACCCGGT 58.749 55.000 5.39 0.00 34.49 5.28
764 830 8.833231 TTAGTGACCTAGAGTGAATTTTTCTG 57.167 34.615 0.00 0.00 0.00 3.02
812 904 8.436778 ACAATTTTAGAGTTTATTTTGGGCCTT 58.563 29.630 4.53 0.00 0.00 4.35
868 961 4.377431 GCGCAGAATAATCCATTAACCGAG 60.377 45.833 0.30 0.00 0.00 4.63
893 986 2.545526 GACATTCACGGCCTGATACATG 59.454 50.000 0.00 7.37 0.00 3.21
904 997 1.051556 TGATACATGGGCCCGTAGCA 61.052 55.000 20.04 20.04 46.50 3.49
1201 1323 0.458716 CCTCGCCGAAGAAGAAGACC 60.459 60.000 0.00 0.00 0.00 3.85
1278 1400 1.480545 GAGGAAGAGCAGGAAGAGGAC 59.519 57.143 0.00 0.00 0.00 3.85
1393 1515 1.533129 GCCGCGTGAGTTCAACTTTTT 60.533 47.619 4.92 0.00 0.00 1.94
1431 1553 1.450848 GGTTTAGTGCCGGGGCTAC 60.451 63.158 11.55 7.60 42.51 3.58
1432 1554 1.600638 GTTTAGTGCCGGGGCTACT 59.399 57.895 11.55 14.03 42.51 2.57
1433 1555 0.826062 GTTTAGTGCCGGGGCTACTA 59.174 55.000 11.55 13.11 42.51 1.82
1659 1782 5.122239 TGAATATCTGTTTTGCTCAGTTCGG 59.878 40.000 0.00 0.00 34.86 4.30
1759 1882 5.178438 GCTTGTGTTTTGTTTCAGGTTTCAA 59.822 36.000 0.00 0.00 0.00 2.69
1773 1896 5.128499 TCAGGTTTCAATCTTTGCAGGAAAA 59.872 36.000 0.00 0.00 0.00 2.29
1939 2073 8.450964 TGAGTTTTGCACATTTATAAGCTAGTC 58.549 33.333 0.00 0.00 0.00 2.59
1958 2092 8.852135 AGCTAGTCTTGTATAGTTCCATCTAAC 58.148 37.037 0.00 0.00 0.00 2.34
1977 2111 9.276590 CATCTAACATAAGTTCTTGCATATGGA 57.723 33.333 4.56 0.00 39.15 3.41
1990 2124 3.069872 TGCATATGGACCGTACCGTATTT 59.930 43.478 4.56 0.00 39.31 1.40
2391 2718 7.384932 CCAATTTCTCTGTTGTCATTTTTACCC 59.615 37.037 0.00 0.00 0.00 3.69
2395 2722 4.200874 TCTGTTGTCATTTTTACCCGTGT 58.799 39.130 0.00 0.00 0.00 4.49
2401 2728 7.013464 TGTTGTCATTTTTACCCGTGTCTATTT 59.987 33.333 0.00 0.00 0.00 1.40
2415 2742 6.910433 CCGTGTCTATTTGTTATGCCATAAAC 59.090 38.462 0.00 0.00 0.00 2.01
2416 2743 7.201696 CCGTGTCTATTTGTTATGCCATAAACT 60.202 37.037 0.00 0.00 0.00 2.66
2417 2744 8.181573 CGTGTCTATTTGTTATGCCATAAACTT 58.818 33.333 0.00 0.00 0.00 2.66
2418 2745 9.855021 GTGTCTATTTGTTATGCCATAAACTTT 57.145 29.630 0.00 0.00 0.00 2.66
2430 2757 5.594725 TGCCATAAACTTTGAACCTGTGTTA 59.405 36.000 0.00 0.00 33.97 2.41
2433 2760 7.116233 GCCATAAACTTTGAACCTGTGTTAATG 59.884 37.037 0.00 0.00 33.97 1.90
2447 2774 7.829211 ACCTGTGTTAATGAAACTATGTAGCAT 59.171 33.333 0.00 0.00 38.99 3.79
2476 2804 1.142667 TGTCCATTGGTCACTGCTTGA 59.857 47.619 1.86 0.00 0.00 3.02
2495 2823 5.355350 GCTTGACTATGATTAGTGTGCCTTT 59.645 40.000 0.00 0.00 38.81 3.11
2500 2828 7.334421 TGACTATGATTAGTGTGCCTTTTCTTC 59.666 37.037 0.00 0.00 38.81 2.87
2514 2842 5.355350 GCCTTTTCTTCTTCTATTGCTGCTA 59.645 40.000 0.00 0.00 0.00 3.49
2575 2903 5.455326 CCTTGGACCCTGGTTATTCTCTATG 60.455 48.000 0.00 0.00 0.00 2.23
2578 2906 6.206787 TGGACCCTGGTTATTCTCTATGTAA 58.793 40.000 0.00 0.00 0.00 2.41
2581 2909 7.125792 ACCCTGGTTATTCTCTATGTAACAG 57.874 40.000 0.00 0.00 31.59 3.16
2586 2914 9.823647 CTGGTTATTCTCTATGTAACAGTTCAT 57.176 33.333 0.00 0.00 31.59 2.57
2599 2927 8.818622 TGTAACAGTTCATATCAGTACTACCT 57.181 34.615 0.00 0.00 0.00 3.08
2600 2928 8.900781 TGTAACAGTTCATATCAGTACTACCTC 58.099 37.037 0.00 0.00 0.00 3.85
2601 2929 6.963083 ACAGTTCATATCAGTACTACCTCC 57.037 41.667 0.00 0.00 0.00 4.30
2602 2930 5.531659 ACAGTTCATATCAGTACTACCTCCG 59.468 44.000 0.00 0.00 0.00 4.63
2603 2931 5.531659 CAGTTCATATCAGTACTACCTCCGT 59.468 44.000 0.00 0.00 0.00 4.69
2604 2932 6.039493 CAGTTCATATCAGTACTACCTCCGTT 59.961 42.308 0.00 0.00 0.00 4.44
2605 2933 6.606395 AGTTCATATCAGTACTACCTCCGTTT 59.394 38.462 0.00 0.00 0.00 3.60
2606 2934 6.630444 TCATATCAGTACTACCTCCGTTTC 57.370 41.667 0.00 0.00 0.00 2.78
2607 2935 6.124340 TCATATCAGTACTACCTCCGTTTCA 58.876 40.000 0.00 0.00 0.00 2.69
2608 2936 4.985538 ATCAGTACTACCTCCGTTTCAG 57.014 45.455 0.00 0.00 0.00 3.02
2609 2937 3.759581 TCAGTACTACCTCCGTTTCAGT 58.240 45.455 0.00 0.00 0.00 3.41
2610 2938 4.147321 TCAGTACTACCTCCGTTTCAGTT 58.853 43.478 0.00 0.00 0.00 3.16
2611 2939 4.586001 TCAGTACTACCTCCGTTTCAGTTT 59.414 41.667 0.00 0.00 0.00 2.66
2612 2940 5.769662 TCAGTACTACCTCCGTTTCAGTTTA 59.230 40.000 0.00 0.00 0.00 2.01
2613 2941 5.860716 CAGTACTACCTCCGTTTCAGTTTAC 59.139 44.000 0.00 0.00 0.00 2.01
2614 2942 4.942761 ACTACCTCCGTTTCAGTTTACA 57.057 40.909 0.00 0.00 0.00 2.41
2615 2943 5.280654 ACTACCTCCGTTTCAGTTTACAA 57.719 39.130 0.00 0.00 0.00 2.41
2616 2944 5.295152 ACTACCTCCGTTTCAGTTTACAAG 58.705 41.667 0.00 0.00 0.00 3.16
2617 2945 4.146745 ACCTCCGTTTCAGTTTACAAGT 57.853 40.909 0.00 0.00 0.00 3.16
2618 2946 4.124970 ACCTCCGTTTCAGTTTACAAGTC 58.875 43.478 0.00 0.00 0.00 3.01
2619 2947 3.497262 CCTCCGTTTCAGTTTACAAGTCC 59.503 47.826 0.00 0.00 0.00 3.85
2620 2948 4.377897 CTCCGTTTCAGTTTACAAGTCCT 58.622 43.478 0.00 0.00 0.00 3.85
2621 2949 4.124238 TCCGTTTCAGTTTACAAGTCCTG 58.876 43.478 0.00 0.00 0.00 3.86
2622 2950 3.875134 CCGTTTCAGTTTACAAGTCCTGT 59.125 43.478 0.00 0.00 42.47 4.00
2623 2951 4.260620 CCGTTTCAGTTTACAAGTCCTGTG 60.261 45.833 0.00 0.00 39.20 3.66
2624 2952 4.598062 GTTTCAGTTTACAAGTCCTGTGC 58.402 43.478 0.00 0.00 39.20 4.57
2625 2953 2.479837 TCAGTTTACAAGTCCTGTGCG 58.520 47.619 0.00 0.00 39.20 5.34
2626 2954 2.159014 TCAGTTTACAAGTCCTGTGCGT 60.159 45.455 0.00 0.00 39.20 5.24
2627 2955 3.068448 TCAGTTTACAAGTCCTGTGCGTA 59.932 43.478 0.00 0.00 39.20 4.42
2628 2956 3.994392 CAGTTTACAAGTCCTGTGCGTAT 59.006 43.478 0.00 0.00 39.20 3.06
2629 2957 5.047872 TCAGTTTACAAGTCCTGTGCGTATA 60.048 40.000 0.00 0.00 39.20 1.47
2630 2958 5.061808 CAGTTTACAAGTCCTGTGCGTATAC 59.938 44.000 0.00 0.00 39.20 1.47
2631 2959 2.667473 ACAAGTCCTGTGCGTATACC 57.333 50.000 0.00 0.00 36.69 2.73
2632 2960 2.176889 ACAAGTCCTGTGCGTATACCT 58.823 47.619 0.00 0.00 36.69 3.08
2633 2961 3.359033 ACAAGTCCTGTGCGTATACCTA 58.641 45.455 0.00 0.00 36.69 3.08
2634 2962 3.380637 ACAAGTCCTGTGCGTATACCTAG 59.619 47.826 0.00 0.00 36.69 3.02
2635 2963 2.584236 AGTCCTGTGCGTATACCTAGG 58.416 52.381 7.41 7.41 0.00 3.02
2636 2964 2.091994 AGTCCTGTGCGTATACCTAGGT 60.092 50.000 20.57 20.57 0.00 3.08
2637 2965 2.692041 GTCCTGTGCGTATACCTAGGTT 59.308 50.000 22.11 10.62 0.00 3.50
2638 2966 2.691526 TCCTGTGCGTATACCTAGGTTG 59.308 50.000 22.11 9.15 0.00 3.77
2639 2967 2.470821 CTGTGCGTATACCTAGGTTGC 58.529 52.381 22.11 18.70 0.00 4.17
2640 2968 1.137479 TGTGCGTATACCTAGGTTGCC 59.863 52.381 22.11 12.89 0.00 4.52
2641 2969 1.137479 GTGCGTATACCTAGGTTGCCA 59.863 52.381 22.11 1.21 0.00 4.92
2642 2970 1.832366 TGCGTATACCTAGGTTGCCAA 59.168 47.619 22.11 0.75 0.00 4.52
2643 2971 2.436542 TGCGTATACCTAGGTTGCCAAT 59.563 45.455 22.11 9.64 0.00 3.16
2644 2972 3.118186 TGCGTATACCTAGGTTGCCAATT 60.118 43.478 22.11 0.00 0.00 2.32
2645 2973 3.881089 GCGTATACCTAGGTTGCCAATTT 59.119 43.478 22.11 0.00 0.00 1.82
2646 2974 4.337274 GCGTATACCTAGGTTGCCAATTTT 59.663 41.667 22.11 0.00 0.00 1.82
2647 2975 5.528320 GCGTATACCTAGGTTGCCAATTTTA 59.472 40.000 22.11 0.00 0.00 1.52
2648 2976 6.206048 GCGTATACCTAGGTTGCCAATTTTAT 59.794 38.462 22.11 5.71 0.00 1.40
2649 2977 7.572539 GCGTATACCTAGGTTGCCAATTTTATC 60.573 40.741 22.11 0.00 0.00 1.75
2650 2978 7.442969 CGTATACCTAGGTTGCCAATTTTATCA 59.557 37.037 22.11 0.00 0.00 2.15
2651 2979 5.914898 ACCTAGGTTGCCAATTTTATCAC 57.085 39.130 9.21 0.00 0.00 3.06
2652 2980 4.709886 ACCTAGGTTGCCAATTTTATCACC 59.290 41.667 9.21 0.00 0.00 4.02
2653 2981 4.099419 CCTAGGTTGCCAATTTTATCACCC 59.901 45.833 0.00 0.00 0.00 4.61
2654 2982 3.790126 AGGTTGCCAATTTTATCACCCT 58.210 40.909 0.00 0.00 0.00 4.34
2655 2983 4.941713 AGGTTGCCAATTTTATCACCCTA 58.058 39.130 0.00 0.00 0.00 3.53
2656 2984 5.337788 AGGTTGCCAATTTTATCACCCTAA 58.662 37.500 0.00 0.00 0.00 2.69
2657 2985 5.963865 AGGTTGCCAATTTTATCACCCTAAT 59.036 36.000 0.00 0.00 0.00 1.73
2658 2986 7.129425 AGGTTGCCAATTTTATCACCCTAATA 58.871 34.615 0.00 0.00 0.00 0.98
2659 2987 7.789349 AGGTTGCCAATTTTATCACCCTAATAT 59.211 33.333 0.00 0.00 0.00 1.28
2660 2988 9.084533 GGTTGCCAATTTTATCACCCTAATATA 57.915 33.333 0.00 0.00 0.00 0.86
2705 3033 7.668525 ATACCTTTTGAAAGTAGAAACTCCG 57.331 36.000 3.09 0.00 33.75 4.63
2706 3034 5.677567 ACCTTTTGAAAGTAGAAACTCCGA 58.322 37.500 3.09 0.00 33.75 4.55
2707 3035 6.117488 ACCTTTTGAAAGTAGAAACTCCGAA 58.883 36.000 3.09 0.00 33.75 4.30
2708 3036 6.260271 ACCTTTTGAAAGTAGAAACTCCGAAG 59.740 38.462 3.09 0.00 33.75 3.79
2709 3037 6.260271 CCTTTTGAAAGTAGAAACTCCGAAGT 59.740 38.462 3.09 0.00 33.75 3.01
2710 3038 7.201705 CCTTTTGAAAGTAGAAACTCCGAAGTT 60.202 37.037 3.09 0.00 39.62 2.66
2725 3053 9.457436 AACTCCGAAGTTTATGTTGGTATATTT 57.543 29.630 0.00 0.00 43.28 1.40
2726 3054 9.457436 ACTCCGAAGTTTATGTTGGTATATTTT 57.543 29.630 0.00 0.00 28.74 1.82
2762 3090 9.874205 ATGATTTGTATTAGGTTGGTCAAATTG 57.126 29.630 0.00 0.00 36.22 2.32
2763 3091 9.083422 TGATTTGTATTAGGTTGGTCAAATTGA 57.917 29.630 0.00 0.00 36.22 2.57
2764 3092 9.353999 GATTTGTATTAGGTTGGTCAAATTGAC 57.646 33.333 17.16 17.16 46.23 3.18
2775 3103 4.189639 GTCAAATTGACGACCTAGGAGT 57.810 45.455 17.98 15.04 37.67 3.85
2776 3104 5.320549 GTCAAATTGACGACCTAGGAGTA 57.679 43.478 17.98 1.50 37.67 2.59
2777 3105 5.100943 GTCAAATTGACGACCTAGGAGTAC 58.899 45.833 17.98 9.52 37.67 2.73
2778 3106 4.768448 TCAAATTGACGACCTAGGAGTACA 59.232 41.667 17.98 11.72 0.00 2.90
2779 3107 4.715527 AATTGACGACCTAGGAGTACAC 57.284 45.455 17.98 4.31 0.00 2.90
2780 3108 1.730501 TGACGACCTAGGAGTACACG 58.269 55.000 17.98 12.63 0.00 4.49
2781 3109 0.376502 GACGACCTAGGAGTACACGC 59.623 60.000 17.98 0.00 0.00 5.34
2782 3110 0.321919 ACGACCTAGGAGTACACGCA 60.322 55.000 17.98 0.00 0.00 5.24
2783 3111 1.022735 CGACCTAGGAGTACACGCAT 58.977 55.000 17.98 0.00 0.00 4.73
2784 3112 1.268589 CGACCTAGGAGTACACGCATG 60.269 57.143 17.98 0.00 0.00 4.06
2785 3113 0.460311 ACCTAGGAGTACACGCATGC 59.540 55.000 17.98 7.91 0.00 4.06
2786 3114 0.249489 CCTAGGAGTACACGCATGCC 60.249 60.000 13.15 0.00 0.00 4.40
2787 3115 0.249489 CTAGGAGTACACGCATGCCC 60.249 60.000 13.15 5.38 0.00 5.36
2788 3116 0.686441 TAGGAGTACACGCATGCCCT 60.686 55.000 13.15 13.08 0.00 5.19
2789 3117 1.815421 GGAGTACACGCATGCCCTG 60.815 63.158 13.15 10.28 0.00 4.45
2790 3118 1.079127 GAGTACACGCATGCCCTGT 60.079 57.895 13.15 15.73 0.00 4.00
2791 3119 0.174845 GAGTACACGCATGCCCTGTA 59.825 55.000 13.15 14.69 0.00 2.74
2792 3120 0.611200 AGTACACGCATGCCCTGTAA 59.389 50.000 19.50 6.42 0.00 2.41
2793 3121 1.002659 AGTACACGCATGCCCTGTAAA 59.997 47.619 19.50 3.73 0.00 2.01
2794 3122 1.129811 GTACACGCATGCCCTGTAAAC 59.870 52.381 19.50 10.78 0.00 2.01
2795 3123 0.250727 ACACGCATGCCCTGTAAACT 60.251 50.000 13.15 0.00 0.00 2.66
2796 3124 0.168788 CACGCATGCCCTGTAAACTG 59.831 55.000 13.15 0.00 0.00 3.16
2797 3125 0.036164 ACGCATGCCCTGTAAACTGA 59.964 50.000 13.15 0.00 0.00 3.41
2798 3126 0.729116 CGCATGCCCTGTAAACTGAG 59.271 55.000 13.15 0.00 0.00 3.35
2799 3127 1.675714 CGCATGCCCTGTAAACTGAGA 60.676 52.381 13.15 0.00 0.00 3.27
2800 3128 2.012673 GCATGCCCTGTAAACTGAGAG 58.987 52.381 6.36 0.00 0.00 3.20
2801 3129 2.355108 GCATGCCCTGTAAACTGAGAGA 60.355 50.000 6.36 0.00 0.00 3.10
2802 3130 3.529533 CATGCCCTGTAAACTGAGAGAG 58.470 50.000 0.00 0.00 0.00 3.20
2803 3131 2.889512 TGCCCTGTAAACTGAGAGAGA 58.110 47.619 0.00 0.00 0.00 3.10
2804 3132 2.828520 TGCCCTGTAAACTGAGAGAGAG 59.171 50.000 0.00 0.00 0.00 3.20
2805 3133 2.167487 GCCCTGTAAACTGAGAGAGAGG 59.833 54.545 0.00 0.00 0.00 3.69
2806 3134 3.436243 CCCTGTAAACTGAGAGAGAGGT 58.564 50.000 0.00 0.00 0.00 3.85
2827 3155 8.056400 AGAGGTAGTAGTTCTGTCTATGACATT 58.944 37.037 0.65 0.00 41.94 2.71
2828 3156 9.339850 GAGGTAGTAGTTCTGTCTATGACATTA 57.660 37.037 0.65 0.00 41.94 1.90
2829 3157 9.696572 AGGTAGTAGTTCTGTCTATGACATTAA 57.303 33.333 0.65 0.00 41.94 1.40
2877 3229 3.694072 TGAAGCTGTTGCAGTAGTTGTTT 59.306 39.130 0.00 0.00 42.74 2.83
2917 3269 6.417258 TGACCAAGAAATGATGCTCTCATAA 58.583 36.000 3.26 0.00 44.03 1.90
2991 3343 4.979197 CGCAAGAGTAGGTTCATGTATCTC 59.021 45.833 0.00 0.00 43.02 2.75
2992 3344 5.293560 GCAAGAGTAGGTTCATGTATCTCC 58.706 45.833 0.00 0.00 0.00 3.71
3051 3403 3.066064 TGTTTCGTGGAATGAACACTTGG 59.934 43.478 0.00 0.00 42.51 3.61
3062 3414 3.489355 TGAACACTTGGATTCAGCACAT 58.511 40.909 0.00 0.00 31.29 3.21
3071 3423 5.876651 TGGATTCAGCACATCATACTAGT 57.123 39.130 0.00 0.00 0.00 2.57
3076 3428 6.968131 TTCAGCACATCATACTAGTTGTTC 57.032 37.500 0.00 0.00 0.00 3.18
3080 3432 8.138074 TCAGCACATCATACTAGTTGTTCTATC 58.862 37.037 0.00 0.00 0.00 2.08
3081 3433 7.922811 CAGCACATCATACTAGTTGTTCTATCA 59.077 37.037 0.00 0.00 0.00 2.15
3082 3434 8.646004 AGCACATCATACTAGTTGTTCTATCAT 58.354 33.333 0.00 0.00 0.00 2.45
3083 3435 8.920665 GCACATCATACTAGTTGTTCTATCATC 58.079 37.037 0.00 0.00 0.00 2.92
3091 3448 5.632034 AGTTGTTCTATCATCTTACCCCC 57.368 43.478 0.00 0.00 0.00 5.40
3128 3514 7.461182 CCAGTTGATAATGGTTTCCTTTGTA 57.539 36.000 0.00 0.00 0.00 2.41
3490 3879 0.182537 TGGGTGTTTGTAGCTGCTGT 59.817 50.000 13.43 0.00 0.00 4.40
3547 3940 4.696877 CACAGTCCATTTCTTATGCTGACA 59.303 41.667 0.00 0.00 0.00 3.58
3687 4080 6.500041 CCACAAAAACCTAAAAATCTCGACA 58.500 36.000 0.00 0.00 0.00 4.35
3722 4116 4.344978 TCTGCAAGTAGAGTAGTCCATGT 58.655 43.478 0.00 0.00 33.76 3.21
4014 5324 4.846137 CGTTTTCGGCTCAAGTTAAATCAG 59.154 41.667 0.00 0.00 39.94 2.90
4015 5325 5.154222 GTTTTCGGCTCAAGTTAAATCAGG 58.846 41.667 0.00 0.00 0.00 3.86
4016 5326 2.985896 TCGGCTCAAGTTAAATCAGGG 58.014 47.619 0.00 0.00 0.00 4.45
4017 5327 2.569853 TCGGCTCAAGTTAAATCAGGGA 59.430 45.455 0.00 0.00 0.00 4.20
4018 5328 3.199946 TCGGCTCAAGTTAAATCAGGGAT 59.800 43.478 0.00 0.00 0.00 3.85
4019 5329 3.561725 CGGCTCAAGTTAAATCAGGGATC 59.438 47.826 0.00 0.00 0.00 3.36
4020 5330 4.684485 CGGCTCAAGTTAAATCAGGGATCT 60.684 45.833 0.00 0.00 0.00 2.75
4021 5331 5.196695 GGCTCAAGTTAAATCAGGGATCTT 58.803 41.667 0.00 0.00 0.00 2.40
4022 5332 5.067023 GGCTCAAGTTAAATCAGGGATCTTG 59.933 44.000 0.00 0.00 34.19 3.02
4023 5333 5.882557 GCTCAAGTTAAATCAGGGATCTTGA 59.117 40.000 0.00 0.00 37.86 3.02
4024 5334 6.545298 GCTCAAGTTAAATCAGGGATCTTGAT 59.455 38.462 0.00 7.24 38.90 2.57
4025 5335 7.468357 GCTCAAGTTAAATCAGGGATCTTGATG 60.468 40.741 12.08 2.97 38.90 3.07
4026 5336 7.405292 TCAAGTTAAATCAGGGATCTTGATGT 58.595 34.615 12.08 10.00 36.16 3.06
4027 5337 7.337689 TCAAGTTAAATCAGGGATCTTGATGTG 59.662 37.037 12.08 6.39 36.16 3.21
4028 5338 6.725364 AGTTAAATCAGGGATCTTGATGTGT 58.275 36.000 12.08 5.92 0.00 3.72
4029 5339 6.600822 AGTTAAATCAGGGATCTTGATGTGTG 59.399 38.462 12.08 0.00 0.00 3.82
4098 5408 0.723981 GAAGTCTTGGCTGATCACGC 59.276 55.000 8.20 8.20 0.00 5.34
4269 7042 3.232213 ACTGCACAAGATAGTACGTGG 57.768 47.619 0.00 0.00 0.00 4.94
4389 9206 5.240121 TCTCGGTCCTAAAATAAGCGTTTT 58.760 37.500 0.00 3.65 35.56 2.43
4505 9946 5.912892 TGAGCAACAACTAATATGGATCGA 58.087 37.500 0.00 0.00 0.00 3.59
4684 10422 2.417933 GTCTGTTATCAGCTTGTGCAGG 59.582 50.000 0.00 0.00 42.74 4.85
4685 10423 2.302733 TCTGTTATCAGCTTGTGCAGGA 59.697 45.455 0.00 0.00 42.74 3.86
4686 10424 3.054875 TCTGTTATCAGCTTGTGCAGGAT 60.055 43.478 0.00 0.00 42.74 3.24
4687 10425 3.689347 TGTTATCAGCTTGTGCAGGATT 58.311 40.909 0.00 0.00 42.74 3.01
4688 10426 3.691118 TGTTATCAGCTTGTGCAGGATTC 59.309 43.478 0.00 0.00 42.74 2.52
4689 10427 1.760192 ATCAGCTTGTGCAGGATTCC 58.240 50.000 0.00 0.00 42.74 3.01
4690 10428 0.674581 TCAGCTTGTGCAGGATTCCG 60.675 55.000 0.00 0.00 42.74 4.30
4691 10429 0.957395 CAGCTTGTGCAGGATTCCGT 60.957 55.000 0.00 0.00 42.74 4.69
4692 10430 0.250901 AGCTTGTGCAGGATTCCGTT 60.251 50.000 0.00 0.00 42.74 4.44
4693 10431 0.598065 GCTTGTGCAGGATTCCGTTT 59.402 50.000 0.00 0.00 39.41 3.60
4694 10432 1.666888 GCTTGTGCAGGATTCCGTTTG 60.667 52.381 0.00 0.00 39.41 2.93
4695 10433 1.879380 CTTGTGCAGGATTCCGTTTGA 59.121 47.619 0.00 0.00 0.00 2.69
4696 10434 1.522668 TGTGCAGGATTCCGTTTGAG 58.477 50.000 0.00 0.00 0.00 3.02
4697 10435 0.169009 GTGCAGGATTCCGTTTGAGC 59.831 55.000 0.00 0.00 0.00 4.26
4698 10436 0.250684 TGCAGGATTCCGTTTGAGCA 60.251 50.000 0.00 0.12 0.00 4.26
4699 10437 0.881118 GCAGGATTCCGTTTGAGCAA 59.119 50.000 0.00 0.00 0.00 3.91
4700 10438 1.269448 GCAGGATTCCGTTTGAGCAAA 59.731 47.619 0.00 0.00 0.00 3.68
4701 10439 2.669391 GCAGGATTCCGTTTGAGCAAAG 60.669 50.000 0.00 0.00 0.00 2.77
4702 10440 1.541588 AGGATTCCGTTTGAGCAAAGC 59.458 47.619 0.00 0.00 0.00 3.51
4703 10441 1.541588 GGATTCCGTTTGAGCAAAGCT 59.458 47.619 0.00 0.00 43.88 3.74
4704 10442 2.029918 GGATTCCGTTTGAGCAAAGCTT 60.030 45.455 0.00 0.00 39.88 3.74
4705 10443 2.490328 TTCCGTTTGAGCAAAGCTTG 57.510 45.000 0.00 0.00 39.88 4.01
4706 10444 1.388547 TCCGTTTGAGCAAAGCTTGT 58.611 45.000 0.00 0.00 39.88 3.16
4707 10445 1.065401 TCCGTTTGAGCAAAGCTTGTG 59.935 47.619 0.00 1.84 39.88 3.33
4708 10446 0.848305 CGTTTGAGCAAAGCTTGTGC 59.152 50.000 19.56 19.56 39.88 4.57
4709 10447 1.798446 CGTTTGAGCAAAGCTTGTGCA 60.798 47.619 25.24 10.57 44.74 4.57
4710 10448 1.856597 GTTTGAGCAAAGCTTGTGCAG 59.143 47.619 25.24 7.33 44.74 4.41
4774 10512 3.326946 AGATGCATGACCTACTCCTCT 57.673 47.619 2.46 0.00 0.00 3.69
4785 10523 5.960811 TGACCTACTCCTCTGATCAAAGAAT 59.039 40.000 0.00 0.00 0.00 2.40
4786 10524 7.126061 TGACCTACTCCTCTGATCAAAGAATA 58.874 38.462 0.00 0.00 0.00 1.75
4787 10525 7.786943 TGACCTACTCCTCTGATCAAAGAATAT 59.213 37.037 0.00 0.00 0.00 1.28
4788 10526 8.560124 ACCTACTCCTCTGATCAAAGAATATT 57.440 34.615 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.480073 AGCCTTGGTTGCAAAATTACTGATA 59.520 36.000 0.00 0.00 0.00 2.15
1 2 4.284234 AGCCTTGGTTGCAAAATTACTGAT 59.716 37.500 0.00 0.00 0.00 2.90
2 3 3.640967 AGCCTTGGTTGCAAAATTACTGA 59.359 39.130 0.00 0.00 0.00 3.41
3 4 3.742369 CAGCCTTGGTTGCAAAATTACTG 59.258 43.478 0.00 1.37 0.00 2.74
4 5 3.244181 CCAGCCTTGGTTGCAAAATTACT 60.244 43.478 0.00 0.00 39.79 2.24
5 6 3.066380 CCAGCCTTGGTTGCAAAATTAC 58.934 45.455 0.00 0.00 39.79 1.89
6 7 2.968574 TCCAGCCTTGGTTGCAAAATTA 59.031 40.909 0.00 0.00 45.26 1.40
7 8 1.767681 TCCAGCCTTGGTTGCAAAATT 59.232 42.857 0.00 0.00 45.26 1.82
8 9 1.422531 TCCAGCCTTGGTTGCAAAAT 58.577 45.000 0.00 0.00 45.26 1.82
9 10 1.198713 TTCCAGCCTTGGTTGCAAAA 58.801 45.000 0.00 0.00 45.26 2.44
10 11 1.198713 TTTCCAGCCTTGGTTGCAAA 58.801 45.000 0.00 0.00 45.26 3.68
11 12 1.198713 TTTTCCAGCCTTGGTTGCAA 58.801 45.000 0.00 0.00 45.26 4.08
12 13 1.344114 GATTTTCCAGCCTTGGTTGCA 59.656 47.619 0.00 0.00 45.26 4.08
13 14 1.344114 TGATTTTCCAGCCTTGGTTGC 59.656 47.619 0.00 0.00 45.26 4.17
14 15 2.607771 CGTGATTTTCCAGCCTTGGTTG 60.608 50.000 0.00 0.00 45.26 3.77
15 16 1.613437 CGTGATTTTCCAGCCTTGGTT 59.387 47.619 0.00 0.00 45.26 3.67
16 17 1.202879 TCGTGATTTTCCAGCCTTGGT 60.203 47.619 0.00 0.00 45.26 3.67
17 18 1.200020 GTCGTGATTTTCCAGCCTTGG 59.800 52.381 0.00 0.00 46.49 3.61
18 19 1.200020 GGTCGTGATTTTCCAGCCTTG 59.800 52.381 0.00 0.00 0.00 3.61
19 20 1.202879 TGGTCGTGATTTTCCAGCCTT 60.203 47.619 0.00 0.00 0.00 4.35
20 21 0.400213 TGGTCGTGATTTTCCAGCCT 59.600 50.000 0.00 0.00 0.00 4.58
21 22 1.243902 TTGGTCGTGATTTTCCAGCC 58.756 50.000 0.00 0.00 0.00 4.85
22 23 2.228822 ACATTGGTCGTGATTTTCCAGC 59.771 45.455 0.00 0.00 0.00 4.85
23 24 4.083581 GACATTGGTCGTGATTTTCCAG 57.916 45.455 0.00 0.00 33.68 3.86
41 42 9.582431 GCTGTGATTAATACAGTAGTTTAGACA 57.418 33.333 18.26 0.00 45.60 3.41
295 320 1.699083 TCATGTTGTCTTCCAGCTCCA 59.301 47.619 0.00 0.00 0.00 3.86
326 351 4.824515 CCCTCCTCCGCCGTCTCT 62.825 72.222 0.00 0.00 0.00 3.10
370 398 1.282570 CATTGCCAACGTTGACGCT 59.717 52.632 29.35 6.38 44.43 5.07
660 726 1.200519 TACTTGCGCTAGGGGTTCAT 58.799 50.000 22.48 2.63 0.00 2.57
719 785 0.463116 ACTTGAACCGGGTGACACAC 60.463 55.000 6.32 2.03 0.00 3.82
732 798 6.971726 TCACTCTAGGTCACTAAACTTGAA 57.028 37.500 0.00 0.00 0.00 2.69
868 961 0.037326 TCAGGCCGTGAATGTCAGAC 60.037 55.000 0.00 0.00 29.64 3.51
893 986 3.541713 CTCCTCTGCTACGGGCCC 61.542 72.222 13.57 13.57 40.92 5.80
904 997 0.985490 GAGTGAATGGGGGCTCCTCT 60.985 60.000 4.32 0.00 36.20 3.69
1201 1323 3.130160 GCCGCCCTTCTGCTTCTG 61.130 66.667 0.00 0.00 0.00 3.02
1278 1400 1.001760 TTCCCCCTCCTTCTCCTCG 59.998 63.158 0.00 0.00 0.00 4.63
1393 1515 2.158957 CCCTAGCAATGTTTAGGCGAGA 60.159 50.000 7.24 0.00 36.02 4.04
1431 1553 2.304751 AATCGCACCGTAAACCCTAG 57.695 50.000 0.00 0.00 0.00 3.02
1432 1554 2.289569 ACAAATCGCACCGTAAACCCTA 60.290 45.455 0.00 0.00 0.00 3.53
1433 1555 1.161843 CAAATCGCACCGTAAACCCT 58.838 50.000 0.00 0.00 0.00 4.34
1659 1782 6.984474 TGAATATACCAAGACGAAAGGACATC 59.016 38.462 0.00 0.00 0.00 3.06
1759 1882 4.039488 TGATGCACTTTTTCCTGCAAAGAT 59.961 37.500 2.16 0.00 46.18 2.40
1912 2039 8.454106 ACTAGCTTATAAATGTGCAAAACTCAG 58.546 33.333 0.00 0.00 0.00 3.35
1951 2085 9.276590 TCCATATGCAAGAACTTATGTTAGATG 57.723 33.333 0.00 0.00 36.39 2.90
1952 2086 9.277783 GTCCATATGCAAGAACTTATGTTAGAT 57.722 33.333 0.00 0.00 36.39 1.98
1958 2092 4.816385 ACGGTCCATATGCAAGAACTTATG 59.184 41.667 0.00 0.00 0.00 1.90
2361 2688 7.775397 AAATGACAACAGAGAAATTGGTTTG 57.225 32.000 0.00 0.00 0.00 2.93
2391 2718 7.693952 AGTTTATGGCATAACAAATAGACACG 58.306 34.615 19.11 0.00 0.00 4.49
2401 2728 6.266558 ACAGGTTCAAAGTTTATGGCATAACA 59.733 34.615 19.11 8.42 0.00 2.41
2415 2742 9.398170 CATAGTTTCATTAACACAGGTTCAAAG 57.602 33.333 0.00 0.00 39.30 2.77
2416 2743 8.908903 ACATAGTTTCATTAACACAGGTTCAAA 58.091 29.630 0.00 0.00 39.30 2.69
2417 2744 8.458573 ACATAGTTTCATTAACACAGGTTCAA 57.541 30.769 0.00 0.00 39.30 2.69
2418 2745 9.214957 CTACATAGTTTCATTAACACAGGTTCA 57.785 33.333 0.00 0.00 39.30 3.18
2421 2748 7.165485 TGCTACATAGTTTCATTAACACAGGT 58.835 34.615 0.00 0.00 39.30 4.00
2430 2757 6.513806 TGCACAATGCTACATAGTTTCATT 57.486 33.333 2.02 0.00 45.31 2.57
2433 2760 6.808212 ACAATTGCACAATGCTACATAGTTTC 59.192 34.615 5.05 0.00 45.31 2.78
2447 2774 2.697229 TGACCAATGGACAATTGCACAA 59.303 40.909 6.16 0.00 43.80 3.33
2476 2804 7.398024 AGAAGAAAAGGCACACTAATCATAGT 58.602 34.615 0.00 0.00 43.22 2.12
2495 2823 6.286240 TCTGTAGCAGCAATAGAAGAAGAA 57.714 37.500 0.00 0.00 0.00 2.52
2554 2882 4.631234 ACATAGAGAATAACCAGGGTCCA 58.369 43.478 0.00 0.00 0.00 4.02
2555 2883 6.099269 TGTTACATAGAGAATAACCAGGGTCC 59.901 42.308 0.00 0.00 0.00 4.46
2575 2903 8.351461 GGAGGTAGTACTGATATGAACTGTTAC 58.649 40.741 5.39 0.00 0.00 2.50
2578 2906 5.531659 CGGAGGTAGTACTGATATGAACTGT 59.468 44.000 5.39 0.00 0.00 3.55
2581 2909 6.388435 AACGGAGGTAGTACTGATATGAAC 57.612 41.667 5.39 0.00 0.00 3.18
2586 2914 5.503927 ACTGAAACGGAGGTAGTACTGATA 58.496 41.667 5.39 0.00 0.00 2.15
2590 2918 5.536161 TGTAAACTGAAACGGAGGTAGTACT 59.464 40.000 0.00 0.00 0.00 2.73
2591 2919 5.772521 TGTAAACTGAAACGGAGGTAGTAC 58.227 41.667 0.00 0.00 0.00 2.73
2592 2920 6.040842 ACTTGTAAACTGAAACGGAGGTAGTA 59.959 38.462 0.00 0.00 0.00 1.82
2593 2921 4.942761 TGTAAACTGAAACGGAGGTAGT 57.057 40.909 0.00 0.00 0.00 2.73
2594 2922 5.295152 ACTTGTAAACTGAAACGGAGGTAG 58.705 41.667 0.00 0.00 0.00 3.18
2595 2923 5.280654 ACTTGTAAACTGAAACGGAGGTA 57.719 39.130 0.00 0.00 0.00 3.08
2596 2924 4.124970 GACTTGTAAACTGAAACGGAGGT 58.875 43.478 0.00 0.00 0.00 3.85
2597 2925 3.497262 GGACTTGTAAACTGAAACGGAGG 59.503 47.826 0.00 0.00 0.00 4.30
2598 2926 4.211374 CAGGACTTGTAAACTGAAACGGAG 59.789 45.833 0.00 0.00 32.86 4.63
2599 2927 4.124238 CAGGACTTGTAAACTGAAACGGA 58.876 43.478 0.00 0.00 32.86 4.69
2600 2928 3.875134 ACAGGACTTGTAAACTGAAACGG 59.125 43.478 0.00 0.00 38.56 4.44
2601 2929 4.785341 GCACAGGACTTGTAAACTGAAACG 60.785 45.833 0.00 0.00 38.16 3.60
2602 2930 4.598062 GCACAGGACTTGTAAACTGAAAC 58.402 43.478 0.00 0.00 38.16 2.78
2603 2931 3.311322 CGCACAGGACTTGTAAACTGAAA 59.689 43.478 0.00 0.00 38.16 2.69
2604 2932 2.869801 CGCACAGGACTTGTAAACTGAA 59.130 45.455 0.00 0.00 38.16 3.02
2605 2933 2.159014 ACGCACAGGACTTGTAAACTGA 60.159 45.455 0.00 0.00 38.16 3.41
2606 2934 2.210116 ACGCACAGGACTTGTAAACTG 58.790 47.619 0.00 0.00 38.16 3.16
2607 2935 2.614829 ACGCACAGGACTTGTAAACT 57.385 45.000 0.00 0.00 38.16 2.66
2608 2936 4.328169 GGTATACGCACAGGACTTGTAAAC 59.672 45.833 0.00 0.00 38.16 2.01
2609 2937 4.221262 AGGTATACGCACAGGACTTGTAAA 59.779 41.667 0.00 0.00 38.16 2.01
2610 2938 3.765511 AGGTATACGCACAGGACTTGTAA 59.234 43.478 0.00 0.00 38.16 2.41
2611 2939 3.359033 AGGTATACGCACAGGACTTGTA 58.641 45.455 0.00 0.00 38.16 2.41
2612 2940 2.176889 AGGTATACGCACAGGACTTGT 58.823 47.619 0.00 0.00 41.94 3.16
2613 2941 2.961526 AGGTATACGCACAGGACTTG 57.038 50.000 0.00 0.00 0.00 3.16
2614 2942 2.957006 CCTAGGTATACGCACAGGACTT 59.043 50.000 0.00 0.00 0.00 3.01
2615 2943 2.091994 ACCTAGGTATACGCACAGGACT 60.092 50.000 14.41 0.13 0.00 3.85
2616 2944 2.305009 ACCTAGGTATACGCACAGGAC 58.695 52.381 14.41 0.00 0.00 3.85
2617 2945 2.691526 CAACCTAGGTATACGCACAGGA 59.308 50.000 16.67 0.00 0.00 3.86
2618 2946 2.802057 GCAACCTAGGTATACGCACAGG 60.802 54.545 16.67 3.37 0.00 4.00
2619 2947 2.470821 GCAACCTAGGTATACGCACAG 58.529 52.381 16.67 0.00 0.00 3.66
2620 2948 1.137479 GGCAACCTAGGTATACGCACA 59.863 52.381 16.67 0.00 0.00 4.57
2621 2949 1.137479 TGGCAACCTAGGTATACGCAC 59.863 52.381 16.67 10.09 0.00 5.34
2622 2950 1.487300 TGGCAACCTAGGTATACGCA 58.513 50.000 16.67 5.50 0.00 5.24
2623 2951 2.607631 TTGGCAACCTAGGTATACGC 57.392 50.000 16.67 15.11 0.00 4.42
2624 2952 7.442969 TGATAAAATTGGCAACCTAGGTATACG 59.557 37.037 16.67 5.52 0.00 3.06
2625 2953 8.565416 GTGATAAAATTGGCAACCTAGGTATAC 58.435 37.037 16.67 8.74 0.00 1.47
2626 2954 7.722285 GGTGATAAAATTGGCAACCTAGGTATA 59.278 37.037 16.67 0.00 0.00 1.47
2627 2955 6.549736 GGTGATAAAATTGGCAACCTAGGTAT 59.450 38.462 16.67 0.83 0.00 2.73
2628 2956 5.889289 GGTGATAAAATTGGCAACCTAGGTA 59.111 40.000 16.67 0.00 0.00 3.08
2629 2957 4.709886 GGTGATAAAATTGGCAACCTAGGT 59.290 41.667 9.21 9.21 0.00 3.08
2630 2958 4.099419 GGGTGATAAAATTGGCAACCTAGG 59.901 45.833 7.41 7.41 35.26 3.02
2631 2959 4.956075 AGGGTGATAAAATTGGCAACCTAG 59.044 41.667 0.00 0.00 46.13 3.02
2632 2960 4.941713 AGGGTGATAAAATTGGCAACCTA 58.058 39.130 0.00 0.00 46.13 3.08
2633 2961 3.790126 AGGGTGATAAAATTGGCAACCT 58.210 40.909 0.00 0.00 43.35 3.50
2634 2962 5.669164 TTAGGGTGATAAAATTGGCAACC 57.331 39.130 0.00 0.00 38.39 3.77
2679 3007 9.211485 CGGAGTTTCTACTTTCAAAAGGTATAA 57.789 33.333 7.37 0.00 40.31 0.98
2680 3008 8.587608 TCGGAGTTTCTACTTTCAAAAGGTATA 58.412 33.333 7.37 0.00 40.31 1.47
2681 3009 7.447594 TCGGAGTTTCTACTTTCAAAAGGTAT 58.552 34.615 7.37 0.00 40.31 2.73
2682 3010 6.819284 TCGGAGTTTCTACTTTCAAAAGGTA 58.181 36.000 7.37 0.00 40.31 3.08
2683 3011 5.677567 TCGGAGTTTCTACTTTCAAAAGGT 58.322 37.500 7.37 0.00 40.31 3.50
2684 3012 6.260271 ACTTCGGAGTTTCTACTTTCAAAAGG 59.740 38.462 7.37 0.00 34.81 3.11
2685 3013 7.247929 ACTTCGGAGTTTCTACTTTCAAAAG 57.752 36.000 0.00 0.97 35.92 2.27
2686 3014 7.619964 AACTTCGGAGTTTCTACTTTCAAAA 57.380 32.000 2.29 0.00 43.48 2.44
2700 3028 9.457436 AAAATATACCAACATAAACTTCGGAGT 57.543 29.630 0.00 0.00 37.87 3.85
2736 3064 9.874205 CAATTTGACCAACCTAATACAAATCAT 57.126 29.630 0.00 0.00 37.10 2.45
2737 3065 9.083422 TCAATTTGACCAACCTAATACAAATCA 57.917 29.630 0.00 0.00 37.10 2.57
2738 3066 9.353999 GTCAATTTGACCAACCTAATACAAATC 57.646 33.333 17.07 0.00 41.37 2.17
2739 3067 8.026607 CGTCAATTTGACCAACCTAATACAAAT 58.973 33.333 20.87 0.00 44.20 2.32
2740 3068 7.228906 TCGTCAATTTGACCAACCTAATACAAA 59.771 33.333 20.87 0.00 44.20 2.83
2741 3069 6.711194 TCGTCAATTTGACCAACCTAATACAA 59.289 34.615 20.87 0.00 44.20 2.41
2742 3070 6.148150 GTCGTCAATTTGACCAACCTAATACA 59.852 38.462 20.87 0.00 44.20 2.29
2743 3071 6.540205 GTCGTCAATTTGACCAACCTAATAC 58.460 40.000 20.87 5.03 44.20 1.89
2744 3072 6.730960 GTCGTCAATTTGACCAACCTAATA 57.269 37.500 20.87 0.00 44.20 0.98
2745 3073 5.622770 GTCGTCAATTTGACCAACCTAAT 57.377 39.130 20.87 0.00 44.20 1.73
2754 3082 4.189639 ACTCCTAGGTCGTCAATTTGAC 57.810 45.455 17.76 17.76 43.65 3.18
2755 3083 4.768448 TGTACTCCTAGGTCGTCAATTTGA 59.232 41.667 9.08 0.00 0.00 2.69
2756 3084 4.863131 GTGTACTCCTAGGTCGTCAATTTG 59.137 45.833 9.08 0.00 0.00 2.32
2757 3085 4.380233 CGTGTACTCCTAGGTCGTCAATTT 60.380 45.833 9.08 0.00 0.00 1.82
2758 3086 3.128242 CGTGTACTCCTAGGTCGTCAATT 59.872 47.826 9.08 0.00 0.00 2.32
2759 3087 2.681848 CGTGTACTCCTAGGTCGTCAAT 59.318 50.000 9.08 0.00 0.00 2.57
2760 3088 2.079158 CGTGTACTCCTAGGTCGTCAA 58.921 52.381 9.08 0.00 0.00 3.18
2761 3089 1.730501 CGTGTACTCCTAGGTCGTCA 58.269 55.000 9.08 2.23 0.00 4.35
2762 3090 0.376502 GCGTGTACTCCTAGGTCGTC 59.623 60.000 9.08 0.00 0.00 4.20
2763 3091 0.321919 TGCGTGTACTCCTAGGTCGT 60.322 55.000 9.08 9.96 0.00 4.34
2764 3092 1.022735 ATGCGTGTACTCCTAGGTCG 58.977 55.000 9.08 3.94 0.00 4.79
2765 3093 1.536284 GCATGCGTGTACTCCTAGGTC 60.536 57.143 9.08 0.00 0.00 3.85
2766 3094 0.460311 GCATGCGTGTACTCCTAGGT 59.540 55.000 9.08 0.00 0.00 3.08
2767 3095 0.249489 GGCATGCGTGTACTCCTAGG 60.249 60.000 12.44 0.82 0.00 3.02
2768 3096 0.249489 GGGCATGCGTGTACTCCTAG 60.249 60.000 12.44 0.00 0.00 3.02
2769 3097 0.686441 AGGGCATGCGTGTACTCCTA 60.686 55.000 12.44 0.00 0.00 2.94
2770 3098 1.990060 AGGGCATGCGTGTACTCCT 60.990 57.895 12.44 7.63 0.00 3.69
2771 3099 1.815421 CAGGGCATGCGTGTACTCC 60.815 63.158 12.44 5.12 0.00 3.85
2772 3100 0.174845 TACAGGGCATGCGTGTACTC 59.825 55.000 21.51 3.76 0.00 2.59
2773 3101 0.611200 TTACAGGGCATGCGTGTACT 59.389 50.000 23.91 10.32 0.00 2.73
2774 3102 1.129811 GTTTACAGGGCATGCGTGTAC 59.870 52.381 23.91 16.02 0.00 2.90
2775 3103 1.002659 AGTTTACAGGGCATGCGTGTA 59.997 47.619 21.51 21.51 0.00 2.90
2776 3104 0.250727 AGTTTACAGGGCATGCGTGT 60.251 50.000 23.22 23.22 0.00 4.49
2777 3105 0.168788 CAGTTTACAGGGCATGCGTG 59.831 55.000 12.44 14.08 0.00 5.34
2778 3106 0.036164 TCAGTTTACAGGGCATGCGT 59.964 50.000 12.44 6.78 0.00 5.24
2779 3107 0.729116 CTCAGTTTACAGGGCATGCG 59.271 55.000 12.44 0.00 0.00 4.73
2780 3108 2.012673 CTCTCAGTTTACAGGGCATGC 58.987 52.381 9.90 9.90 0.00 4.06
2781 3109 3.196469 TCTCTCTCAGTTTACAGGGCATG 59.804 47.826 0.00 0.00 0.00 4.06
2782 3110 3.445008 TCTCTCTCAGTTTACAGGGCAT 58.555 45.455 0.00 0.00 0.00 4.40
2783 3111 2.828520 CTCTCTCTCAGTTTACAGGGCA 59.171 50.000 0.00 0.00 0.00 5.36
2784 3112 2.167487 CCTCTCTCTCAGTTTACAGGGC 59.833 54.545 0.00 0.00 0.00 5.19
2785 3113 3.436243 ACCTCTCTCTCAGTTTACAGGG 58.564 50.000 0.00 0.00 0.00 4.45
2786 3114 5.258051 ACTACCTCTCTCTCAGTTTACAGG 58.742 45.833 0.00 0.00 0.00 4.00
2787 3115 7.107542 ACTACTACCTCTCTCTCAGTTTACAG 58.892 42.308 0.00 0.00 0.00 2.74
2788 3116 7.018487 ACTACTACCTCTCTCTCAGTTTACA 57.982 40.000 0.00 0.00 0.00 2.41
2789 3117 7.825761 AGAACTACTACCTCTCTCTCAGTTTAC 59.174 40.741 0.00 0.00 0.00 2.01
2790 3118 7.825270 CAGAACTACTACCTCTCTCTCAGTTTA 59.175 40.741 0.00 0.00 0.00 2.01
2791 3119 6.657541 CAGAACTACTACCTCTCTCTCAGTTT 59.342 42.308 0.00 0.00 0.00 2.66
2792 3120 6.177610 CAGAACTACTACCTCTCTCTCAGTT 58.822 44.000 0.00 0.00 0.00 3.16
2793 3121 5.249852 ACAGAACTACTACCTCTCTCTCAGT 59.750 44.000 0.00 0.00 0.00 3.41
2794 3122 5.741011 ACAGAACTACTACCTCTCTCTCAG 58.259 45.833 0.00 0.00 0.00 3.35
2795 3123 5.486063 AGACAGAACTACTACCTCTCTCTCA 59.514 44.000 0.00 0.00 0.00 3.27
2796 3124 5.985911 AGACAGAACTACTACCTCTCTCTC 58.014 45.833 0.00 0.00 0.00 3.20
2797 3125 7.346175 TCATAGACAGAACTACTACCTCTCTCT 59.654 40.741 0.00 0.00 0.00 3.10
2798 3126 7.440255 GTCATAGACAGAACTACTACCTCTCTC 59.560 44.444 0.00 0.00 32.09 3.20
2799 3127 7.092802 TGTCATAGACAGAACTACTACCTCTCT 60.093 40.741 0.00 0.00 37.67 3.10
2800 3128 7.049133 TGTCATAGACAGAACTACTACCTCTC 58.951 42.308 0.00 0.00 37.67 3.20
2801 3129 6.959904 TGTCATAGACAGAACTACTACCTCT 58.040 40.000 0.00 0.00 37.67 3.69
2802 3130 7.811117 ATGTCATAGACAGAACTACTACCTC 57.189 40.000 6.01 0.00 46.04 3.85
2803 3131 9.696572 TTAATGTCATAGACAGAACTACTACCT 57.303 33.333 6.01 0.00 46.04 3.08
2827 3155 9.077885 ACTCCAGAAAGCATAAAACTGAATTTA 57.922 29.630 0.00 0.00 0.00 1.40
2828 3156 7.955918 ACTCCAGAAAGCATAAAACTGAATTT 58.044 30.769 0.00 0.00 0.00 1.82
2829 3157 7.530426 ACTCCAGAAAGCATAAAACTGAATT 57.470 32.000 0.00 0.00 0.00 2.17
2830 3158 7.530426 AACTCCAGAAAGCATAAAACTGAAT 57.470 32.000 0.00 0.00 0.00 2.57
2831 3159 6.959639 AACTCCAGAAAGCATAAAACTGAA 57.040 33.333 0.00 0.00 0.00 3.02
2833 3161 6.738114 TCAAACTCCAGAAAGCATAAAACTG 58.262 36.000 0.00 0.00 0.00 3.16
2835 3163 6.144563 GCTTCAAACTCCAGAAAGCATAAAAC 59.855 38.462 0.00 0.00 0.00 2.43
2839 3174 4.456911 CAGCTTCAAACTCCAGAAAGCATA 59.543 41.667 7.98 0.00 0.00 3.14
2847 3182 1.677576 TGCAACAGCTTCAAACTCCAG 59.322 47.619 0.00 0.00 0.00 3.86
2877 3229 7.575414 TCTTGGTCAGCAACTATTTTACAAA 57.425 32.000 0.00 0.00 0.00 2.83
2917 3269 9.683069 CAAACATTTGACAAGCTAGTTATTCTT 57.317 29.630 0.00 0.00 40.55 2.52
2991 3343 7.134815 CCATTTTAATAGAGTTGAATCAGCGG 58.865 38.462 0.00 0.00 0.00 5.52
2992 3344 7.697691 ACCATTTTAATAGAGTTGAATCAGCG 58.302 34.615 0.00 0.00 0.00 5.18
3051 3403 7.493971 AGAACAACTAGTATGATGTGCTGAATC 59.506 37.037 5.29 0.00 30.43 2.52
3071 3423 5.844516 CCTAGGGGGTAAGATGATAGAACAA 59.155 44.000 0.00 0.00 0.00 2.83
3128 3514 3.515602 AGGAACTCCAAGAGCAACATT 57.484 42.857 0.00 0.00 38.89 2.71
3518 3907 5.445939 GCATAAGAAATGGACTGTGTACACG 60.446 44.000 20.61 16.80 0.00 4.49
3519 3908 5.643777 AGCATAAGAAATGGACTGTGTACAC 59.356 40.000 19.36 19.36 0.00 2.90
3687 4080 1.407656 TTGCAGAGGTCCAGAACGGT 61.408 55.000 0.00 0.00 35.57 4.83
3722 4116 1.827344 CCATGGAGTACTCAGAGCACA 59.173 52.381 23.91 11.88 0.00 4.57
3809 4300 1.045407 AAACTGTCTACCCAGCACGA 58.955 50.000 0.00 0.00 35.83 4.35
4014 5324 1.839994 TCCCTCACACATCAAGATCCC 59.160 52.381 0.00 0.00 0.00 3.85
4015 5325 3.390639 AGATCCCTCACACATCAAGATCC 59.609 47.826 0.00 0.00 31.16 3.36
4016 5326 4.686191 AGATCCCTCACACATCAAGATC 57.314 45.455 0.00 0.00 0.00 2.75
4017 5327 4.472470 TCAAGATCCCTCACACATCAAGAT 59.528 41.667 0.00 0.00 0.00 2.40
4018 5328 3.840078 TCAAGATCCCTCACACATCAAGA 59.160 43.478 0.00 0.00 0.00 3.02
4019 5329 4.212143 TCAAGATCCCTCACACATCAAG 57.788 45.455 0.00 0.00 0.00 3.02
4020 5330 4.019051 ACATCAAGATCCCTCACACATCAA 60.019 41.667 0.00 0.00 0.00 2.57
4021 5331 3.520721 ACATCAAGATCCCTCACACATCA 59.479 43.478 0.00 0.00 0.00 3.07
4022 5332 4.148128 ACATCAAGATCCCTCACACATC 57.852 45.455 0.00 0.00 0.00 3.06
4023 5333 4.019051 TGAACATCAAGATCCCTCACACAT 60.019 41.667 0.00 0.00 0.00 3.21
4024 5334 3.327464 TGAACATCAAGATCCCTCACACA 59.673 43.478 0.00 0.00 0.00 3.72
4025 5335 3.686726 GTGAACATCAAGATCCCTCACAC 59.313 47.826 9.26 0.00 33.54 3.82
4026 5336 3.327464 TGTGAACATCAAGATCCCTCACA 59.673 43.478 11.45 11.45 39.36 3.58
4027 5337 3.686726 GTGTGAACATCAAGATCCCTCAC 59.313 47.826 0.00 7.98 33.85 3.51
4028 5338 3.327464 TGTGTGAACATCAAGATCCCTCA 59.673 43.478 0.00 0.00 0.00 3.86
4029 5339 3.942829 TGTGTGAACATCAAGATCCCTC 58.057 45.455 0.00 0.00 0.00 4.30
4098 5408 2.096119 ACCGCGTAGAAATTTCCGTTTG 60.096 45.455 14.61 7.44 0.00 2.93
4173 5483 4.272748 GCCGAAACACAAGTCTATTATCCC 59.727 45.833 0.00 0.00 0.00 3.85
4472 9913 4.761235 AGTTGTTGCTCAGATTGATGTG 57.239 40.909 0.00 0.00 0.00 3.21
4505 9946 6.260271 GTCAAGTGTAGCTTACTTTTGGACTT 59.740 38.462 11.95 0.00 36.29 3.01
4684 10422 2.982470 CAAGCTTTGCTCAAACGGAATC 59.018 45.455 0.00 0.00 38.25 2.52
4685 10423 2.362077 ACAAGCTTTGCTCAAACGGAAT 59.638 40.909 0.00 0.00 38.25 3.01
4686 10424 1.748493 ACAAGCTTTGCTCAAACGGAA 59.252 42.857 0.00 0.00 38.25 4.30
4687 10425 1.065401 CACAAGCTTTGCTCAAACGGA 59.935 47.619 0.00 0.00 38.25 4.69
4688 10426 1.480205 CACAAGCTTTGCTCAAACGG 58.520 50.000 0.00 0.00 38.25 4.44
4689 10427 0.848305 GCACAAGCTTTGCTCAAACG 59.152 50.000 19.77 0.80 38.25 3.60
4690 10428 1.856597 CTGCACAAGCTTTGCTCAAAC 59.143 47.619 24.26 5.50 38.25 2.93
4691 10429 1.202440 CCTGCACAAGCTTTGCTCAAA 60.202 47.619 24.26 10.88 38.25 2.69
4692 10430 0.386476 CCTGCACAAGCTTTGCTCAA 59.614 50.000 24.26 11.13 38.25 3.02
4693 10431 0.466007 TCCTGCACAAGCTTTGCTCA 60.466 50.000 24.26 11.63 38.25 4.26
4694 10432 0.886563 ATCCTGCACAAGCTTTGCTC 59.113 50.000 24.26 6.52 38.25 4.26
4695 10433 1.271656 GAATCCTGCACAAGCTTTGCT 59.728 47.619 24.26 11.29 42.56 3.91
4696 10434 1.000060 TGAATCCTGCACAAGCTTTGC 60.000 47.619 20.06 20.06 42.74 3.68
4697 10435 3.054878 GTTGAATCCTGCACAAGCTTTG 58.945 45.455 0.00 0.00 42.74 2.77
4698 10436 2.694628 TGTTGAATCCTGCACAAGCTTT 59.305 40.909 0.00 0.00 42.74 3.51
4699 10437 2.309613 TGTTGAATCCTGCACAAGCTT 58.690 42.857 0.00 0.00 42.74 3.74
4700 10438 1.985473 TGTTGAATCCTGCACAAGCT 58.015 45.000 0.00 0.00 42.74 3.74
4701 10439 2.798976 TTGTTGAATCCTGCACAAGC 57.201 45.000 0.00 0.00 42.57 4.01
4702 10440 3.256383 TCCATTGTTGAATCCTGCACAAG 59.744 43.478 0.00 0.00 0.00 3.16
4703 10441 3.229293 TCCATTGTTGAATCCTGCACAA 58.771 40.909 0.00 0.00 0.00 3.33
4704 10442 2.874014 TCCATTGTTGAATCCTGCACA 58.126 42.857 0.00 0.00 0.00 4.57
4705 10443 3.940209 TTCCATTGTTGAATCCTGCAC 57.060 42.857 0.00 0.00 0.00 4.57
4706 10444 6.407187 CCAATATTCCATTGTTGAATCCTGCA 60.407 38.462 0.00 0.00 34.43 4.41
4707 10445 5.987347 CCAATATTCCATTGTTGAATCCTGC 59.013 40.000 0.00 0.00 34.43 4.85
4708 10446 7.350744 TCCAATATTCCATTGTTGAATCCTG 57.649 36.000 0.00 0.00 34.43 3.86
4709 10447 7.070322 CCTTCCAATATTCCATTGTTGAATCCT 59.930 37.037 0.00 0.00 34.43 3.24
4710 10448 7.212274 CCTTCCAATATTCCATTGTTGAATCC 58.788 38.462 0.00 0.00 34.43 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.