AutoCloner

Multiple sequence alignment - TraesCS3B01G284600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G284600	chr3B	100.000	7372	0	0	1	7372	455682593	455675222	0.000000e+00	13614.0
1	TraesCS3B01G284600	chr3B	96.242	7025	137	27	1	6974	463250508	463257456	0.000000e+00	11393.0
2	TraesCS3B01G284600	chr3B	92.258	310	20	4	6970	7277	463258879	463259186	3.160000e-118	436.0
3	TraesCS3B01G284600	chr3B	97.917	96	2	0	7277	7372	463259156	463259251	4.580000e-37	167.0
4	TraesCS3B01G284600	chr3B	87.013	77	10	0	75	151	829539004	829539080	3.660000e-13	87.9
5	TraesCS3B01G284600	chr3A	94.160	5582	208	46	1349	6881	473718314	473712802	0.000000e+00	8394.0
6	TraesCS3B01G284600	chr3A	91.517	613	21	7	668	1276	473719303	473718718	0.000000e+00	815.0
7	TraesCS3B01G284600	chr3A	88.605	509	40	9	4	507	473721519	473721024	2.940000e-168	603.0
8	TraesCS3B01G284600	chr3A	86.722	482	48	7	6903	7372	473712696	473712219	8.480000e-144	521.0
9	TraesCS3B01G284600	chr3A	86.614	127	8	3	531	650	473719481	473719357	1.670000e-26	132.0
10	TraesCS3B01G284600	chr3A	82.353	136	22	2	168	303	525115325	525115458	4.670000e-22	117.0
11	TraesCS3B01G284600	chr3D	96.239	4866	136	12	1612	6452	355168373	355163530	0.000000e+00	7928.0
12	TraesCS3B01G284600	chr3D	87.004	1462	79	52	31	1434	355169802	355168394	0.000000e+00	1544.0
13	TraesCS3B01G284600	chr3D	90.739	961	62	16	6430	7372	355163514	355162563	0.000000e+00	1256.0
14	TraesCS3B01G284600	chr3D	85.714	77	11	0	75	151	611915907	611915983	1.700000e-11	82.4
15	TraesCS3B01G284600	chr4D	89.130	138	13	2	168	305	294346332	294346467	3.540000e-38	171.0
16	TraesCS3B01G284600	chr4D	84.286	140	22	0	168	307	402546538	402546677	3.590000e-28	137.0
17	TraesCS3B01G284600	chr4B	88.406	138	14	2	168	305	362144093	362144228	1.650000e-36	165.0
18	TraesCS3B01G284600	chr4B	82.857	140	23	1	168	307	498391625	498391763	2.790000e-24	124.0
19	TraesCS3B01G284600	chr4B	85.507	69	9	1	86	154	666798455	666798522	3.690000e-08	71.3
20	TraesCS3B01G284600	chr5D	85.714	140	18	2	173	311	267617561	267617699	5.960000e-31	147.0
21	TraesCS3B01G284600	chr7B	78.632	234	39	9	82	307	96526179	96526409	2.140000e-30	145.0
22	TraesCS3B01G284600	chr5B	84.106	151	19	5	164	311	302063781	302063929	2.770000e-29	141.0
23	TraesCS3B01G284600	chr4A	82.143	140	25	0	168	307	60035582	60035721	3.610000e-23	121.0
24	TraesCS3B01G284600	chr7D	82.482	137	18	6	171	304	628228247	628228114	1.680000e-21	115.0
25	TraesCS3B01G284600	chr1D	86.250	80	10	1	75	154	415612907	415612829	1.320000e-12	86.1
26	TraesCS3B01G284600	chr1A	85.185	81	10	2	75	154	343398561	343398640	1.700000e-11	82.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G284600	chr3B	455675222	455682593	7371	True	13614.000000	13614	100.000000	1	7372	1	chr3B.!!$R1	7371
1	TraesCS3B01G284600	chr3B	463250508	463259251	8743	False	3998.666667	11393	95.472333	1	7372	3	chr3B.!!$F2	7371
2	TraesCS3B01G284600	chr3A	473712219	473721519	9300	True	2093.000000	8394	89.523600	4	7372	5	chr3A.!!$R1	7368
3	TraesCS3B01G284600	chr3D	355162563	355169802	7239	True	3576.000000	7928	91.327333	31	7372	3	chr3D.!!$R1	7341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
650	2198	0.999712	AACGGAAATCCCACCTCCAT	59.000	50.000	0.00	34.14	3.41	F
1246	2849	0.109342	CAAGAAGGAGGTGCAGGTGT	59.891	55.000	0.00	0.00	4.16	F
1663	3601	0.987715	CTGTGTCTGATCGCTTGACG	59.012	55.000	0.00	45.62	4.35	F
3218	5184	1.686325	AAGTGCGACCTGACAGTGGT	61.686	55.000	0.93	41.07	4.16	F
3578	5545	1.860641	TCGGGGTCATCTGCTTCTAA	58.139	50.000	0.00	0.00	2.10	F
3579	5546	2.398588	TCGGGGTCATCTGCTTCTAAT	58.601	47.619	0.00	0.00	1.73	F
5254	7234	1.306654	ACTATTCGGGGGCACAGGA	60.307	57.895	0.00	0.00	3.86	F
5699	7679	2.223923	TGTTGGCAAACCTTTGGAATCG	60.224	45.455	0.00	38.57	3.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1663	3601	1.451651	CAAAACCACAGAATTTCGCGC	59.548	47.619	0.00	0.00	6.86	R
2084	4022	2.953648	CCAGCTAAATCATGATGTGCCA	59.046	45.455	9.46	0.00	4.92	R
3579	5546	0.179020	CAGGTTGAGGAGTTGGCACA	60.179	55.000	0.00	0.00	4.57	R
4318	6285	5.519927	CGGTTTGTTTCTGCTTTTCTTCATT	59.480	36.000	0.00	0.00	2.57	R
5254	7234	0.468226	TTGCAGACGACCCAAGTTCT	59.532	50.000	0.00	0.00	3.01	R
5691	7671	4.635223	GTCATGGATGATCTCGATTCCAA	58.365	43.478	4.84	41.36	3.53	R
6174	8154	0.542938	TGCCACCTGTCTCTAGCTGT	60.543	55.000	0.00	0.00	4.40	R
6786	8815	2.153645	TCTGCTGCAATTGTACCACTG	58.846	47.619	7.40	0.00	3.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	26	6.962182	TCTGAGAGATGGGTGTTTTATTGAT	58.038	36.000	0.00	0.00	0.00	2.57
25	27	6.825213	TCTGAGAGATGGGTGTTTTATTGATG	59.175	38.462	0.00	0.00	0.00	3.07
44	46	6.243216	TGATGATGGAGAAGATGAATGTCA	57.757	37.500	0.00	0.00	0.00	3.58
59	61	2.084610	TGTCACAAAGCCATCTCTCG	57.915	50.000	0.00	0.00	0.00	4.04
79	81	4.098894	TCGGGGTCCTTTTATGTTACTCT	58.901	43.478	0.00	0.00	0.00	3.24
149	151	6.998673	ACTTGCTTAAGTTTGACCAACTCTAT	59.001	34.615	4.02	0.00	45.77	1.98
154	156	9.384764	GCTTAAGTTTGACCAACTCTATAGAAT	57.615	33.333	3.57	0.00	45.77	2.40
205	215	7.587037	AAAGAATCTCACAAGACCAATTTGA	57.413	32.000	0.00	0.00	33.32	2.69
218	228	8.729756	CAAGACCAATTTGATGTTGTAGATGTA	58.270	33.333	0.00	0.00	0.00	2.29
364	376	4.578516	TGCATATGGGTAATTTCCTGTTCG	59.421	41.667	4.56	0.00	0.00	3.95
416	435	1.762858	GACTGGGGGAGAGGGTAGC	60.763	68.421	0.00	0.00	0.00	3.58
650	2198	0.999712	AACGGAAATCCCACCTCCAT	59.000	50.000	0.00	0.00	34.14	3.41
786	2371	3.469739	TCCGTTTCCTACCAACAAAGTC	58.530	45.455	0.00	0.00	0.00	3.01
787	2372	3.135167	TCCGTTTCCTACCAACAAAGTCT	59.865	43.478	0.00	0.00	0.00	3.24
788	2373	3.497262	CCGTTTCCTACCAACAAAGTCTC	59.503	47.826	0.00	0.00	0.00	3.36
902	2496	8.176780	AGAGGAAGCATCTTCTATAATACTCCT	58.823	37.037	1.23	0.00	39.98	3.69
904	2498	8.592809	AGGAAGCATCTTCTATAATACTCCTTG	58.407	37.037	6.54	0.00	0.00	3.61
1246	2849	0.109342	CAAGAAGGAGGTGCAGGTGT	59.891	55.000	0.00	0.00	0.00	4.16
1373	3307	5.470777	GTCATCCTAGTACTACTAGCACAGG	59.529	48.000	15.43	6.67	45.21	4.00
1510	3445	5.416952	GCATAGAAATAATATGGCCACTGCT	59.583	40.000	8.16	0.00	37.74	4.24
1607	3542	6.212589	TGTGTTGATCTATCTTCCCTGTTACA	59.787	38.462	0.00	0.00	0.00	2.41
1608	3543	7.092891	TGTGTTGATCTATCTTCCCTGTTACAT	60.093	37.037	0.00	0.00	0.00	2.29
1609	3544	8.421784	GTGTTGATCTATCTTCCCTGTTACATA	58.578	37.037	0.00	0.00	0.00	2.29
1610	3545	8.421784	TGTTGATCTATCTTCCCTGTTACATAC	58.578	37.037	0.00	0.00	0.00	2.39
1611	3546	8.643324	GTTGATCTATCTTCCCTGTTACATACT	58.357	37.037	0.00	0.00	0.00	2.12
1612	3547	8.783660	TGATCTATCTTCCCTGTTACATACTT	57.216	34.615	0.00	0.00	0.00	2.24
1613	3548	9.877222	TGATCTATCTTCCCTGTTACATACTTA	57.123	33.333	0.00	0.00	0.00	2.24
1663	3601	0.987715	CTGTGTCTGATCGCTTGACG	59.012	55.000	0.00	0.00	45.62	4.35
1882	3820	7.175641	GTCTGTAAACTAGTACTTACTGGTCCA	59.824	40.741	17.44	0.00	45.56	4.02
1883	3821	7.892241	TCTGTAAACTAGTACTTACTGGTCCAT	59.108	37.037	17.44	0.20	45.56	3.41
1957	3895	7.116948	CAGACACACAGTTTATAGTTTGAGGAG	59.883	40.741	0.00	0.00	0.00	3.69
2602	4557	2.302260	TCGCTGAATTTTGGTGGTTCA	58.698	42.857	0.00	0.00	0.00	3.18
2607	4562	3.636300	CTGAATTTTGGTGGTTCACTGGA	59.364	43.478	0.00	0.00	34.40	3.86
3218	5184	1.686325	AAGTGCGACCTGACAGTGGT	61.686	55.000	0.93	0.00	41.07	4.16
3532	5499	6.149129	TGTCTGTCATGTAGTATGGATCAC	57.851	41.667	0.00	0.00	0.00	3.06
3533	5500	5.656416	TGTCTGTCATGTAGTATGGATCACA	59.344	40.000	0.00	0.00	0.00	3.58
3578	5545	1.860641	TCGGGGTCATCTGCTTCTAA	58.139	50.000	0.00	0.00	0.00	2.10
3579	5546	2.398588	TCGGGGTCATCTGCTTCTAAT	58.601	47.619	0.00	0.00	0.00	1.73
3698	5665	4.473196	TCCAGCTAATAGAAACCCACATGA	59.527	41.667	0.00	0.00	0.00	3.07
3741	5708	2.755103	CACACAGGAAAATAGAAGGGGC	59.245	50.000	0.00	0.00	0.00	5.80
4005	5972	2.493675	CAGGACTGAAGAGATCAACCGA	59.506	50.000	0.00	0.00	38.68	4.69
4307	6274	6.416631	TGATCCAAGGATGATCTCAAGTAG	57.583	41.667	6.28	0.00	39.48	2.57
4309	6276	7.069344	TGATCCAAGGATGATCTCAAGTAGTA	58.931	38.462	6.28	0.00	39.48	1.82
4318	6285	9.436957	GGATGATCTCAAGTAGTACAAGAAAAA	57.563	33.333	2.52	0.00	0.00	1.94
4897	6868	3.515502	AGAAGTGAATCTCCGGTTGATCA	59.484	43.478	0.00	0.00	0.00	2.92
4964	6935	9.295825	TCTTATGATTTAGGAGCAAACAAAGAA	57.704	29.630	0.00	0.00	0.00	2.52
4967	6938	7.206981	TGATTTAGGAGCAAACAAAGAAGAG	57.793	36.000	0.00	0.00	0.00	2.85
4968	6939	6.207417	TGATTTAGGAGCAAACAAAGAAGAGG	59.793	38.462	0.00	0.00	0.00	3.69
4969	6940	3.864789	AGGAGCAAACAAAGAAGAGGA	57.135	42.857	0.00	0.00	0.00	3.71
4970	6941	3.481453	AGGAGCAAACAAAGAAGAGGAC	58.519	45.455	0.00	0.00	0.00	3.85
5254	7234	1.306654	ACTATTCGGGGGCACAGGA	60.307	57.895	0.00	0.00	0.00	3.86
5619	7599	2.642139	TACTCCTAAAGGTTCACGCG	57.358	50.000	3.53	3.53	36.34	6.01
5691	7671	3.821033	GAGACATACTGTTGGCAAACCTT	59.179	43.478	0.00	0.00	35.25	3.50
5699	7679	2.223923	TGTTGGCAAACCTTTGGAATCG	60.224	45.455	0.00	0.00	38.57	3.34
5720	7700	3.648009	GAGATCATCCATGACGAGGAAC	58.352	50.000	0.00	0.00	40.03	3.62
5875	7855	5.799213	CAGGGAAAGTAGATCAAGAACTGT	58.201	41.667	0.00	0.00	0.00	3.55
5976	7956	2.430694	CAGATACAATCACGGAGGACCA	59.569	50.000	0.00	0.00	35.59	4.02
6052	8032	4.595762	ATGCTGTTGAAACTGAAAGCAT	57.404	36.364	11.05	11.05	43.92	3.79
6174	8154	1.971167	GTGCGCATTGAACCTCCCA	60.971	57.895	15.91	0.00	0.00	4.37
6184	8164	1.077169	TGAACCTCCCACAGCTAGAGA	59.923	52.381	0.00	0.00	0.00	3.10
6241	8221	2.808543	CTCCAGAAAACGAGGGAAACAG	59.191	50.000	0.00	0.00	0.00	3.16
6332	8312	6.597280	AGCTTCCAACAGACTATGATTCTTTC	59.403	38.462	0.00	0.00	0.00	2.62
6409	8389	5.407387	TGTATACGGTTTGAGAAACTTCTGC	59.593	40.000	0.00	0.00	41.14	4.26
6617	8635	7.148457	GGGGTTTCGTTCAAATTTGTTTGTTTA	60.148	33.333	17.47	0.00	33.82	2.01
6701	8722	8.157476	AGTTTATTAGTTTTCCTTGAGAGCAGA	58.843	33.333	0.00	0.00	0.00	4.26
6702	8723	8.447053	GTTTATTAGTTTTCCTTGAGAGCAGAG	58.553	37.037	0.00	0.00	0.00	3.35
6808	8837	1.470098	GTGGTACAATTGCAGCAGAGG	59.530	52.381	10.78	0.00	44.16	3.69
6883	8914	8.048534	ACATGTTCATCTTGACAAAAGGATAG	57.951	34.615	0.00	0.00	0.00	2.08
6888	8919	8.443937	GTTCATCTTGACAAAAGGATAGTGTAC	58.556	37.037	0.00	0.00	0.00	2.90
7029	10572	7.067981	GGAGGAGATTTTGCAAATCTTCTACAT	59.932	37.037	23.71	11.08	41.48	2.29
7071	10615	8.203485	TGCAGATGAAGGAAAACATTAAAAAGT	58.797	29.630	0.00	0.00	0.00	2.66
7265	10820	9.638239	AAATTGTTGACATAATGTACCACATTC	57.362	29.630	7.76	0.00	44.91	2.67
7359	10914	2.358615	GACGAGGCATGCCACACA	60.359	61.111	37.18	0.00	38.92	3.72

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
2	3	6.720309	TCATCAATAAAACACCCATCTCTCA	58.280	36.000	0.00	0.00	0.00	3.27
24	26	5.425196	TGTGACATTCATCTTCTCCATCA	57.575	39.130	0.00	0.00	0.00	3.07
25	27	6.677431	GCTTTGTGACATTCATCTTCTCCATC	60.677	42.308	0.00	0.00	0.00	3.51
44	46	1.201429	ACCCCGAGAGATGGCTTTGT	61.201	55.000	0.00	0.00	0.00	2.83
59	61	5.396548	GGAGAGAGTAACATAAAAGGACCCC	60.397	48.000	0.00	0.00	0.00	4.95
104	106	9.686683	AGCAAGTTTGACTTATGATAAACCTAT	57.313	29.630	0.00	0.00	36.03	2.57
315	327	2.483877	GGTCAAGCACATCAACATCGAA	59.516	45.455	0.00	0.00	0.00	3.71
316	328	2.076100	GGTCAAGCACATCAACATCGA	58.924	47.619	0.00	0.00	0.00	3.59
364	376	5.048434	GGATGCAGAGAGCCATAAATTTACC	60.048	44.000	0.00	0.00	44.83	2.85
434	454	7.333323	AGATTATTCCTGAAAAGGGCATTTTG	58.667	34.615	15.24	1.16	41.24	2.44
650	2198	3.950794	GATTGACCTGACCGCCGCA	62.951	63.158	0.00	0.00	0.00	5.69
786	2371	0.692756	GAAGGAAGGGGGAGGAGGAG	60.693	65.000	0.00	0.00	0.00	3.69
787	2372	1.396594	GAAGGAAGGGGGAGGAGGA	59.603	63.158	0.00	0.00	0.00	3.71
788	2373	1.694525	GGAAGGAAGGGGGAGGAGG	60.695	68.421	0.00	0.00	0.00	4.30
902	2496	2.675075	GGCGGGGCTGCTTTACAA	60.675	61.111	0.00	0.00	34.52	2.41
994	2594	0.674581	TTGCTCCTGTGCATCTTCCG	60.675	55.000	0.00	0.00	42.96	4.30
1373	3307	6.688385	CACAATTACATCATCAATTGGACGAC	59.312	38.462	5.42	0.00	43.36	4.34
1510	3445	4.710324	AGACCAATCACCTAAACGAAACA	58.290	39.130	0.00	0.00	0.00	2.83
1572	3507	6.484288	AGATAGATCAACACAATGGACCAAA	58.516	36.000	0.00	0.00	0.00	3.28
1609	3544	9.200817	AGAAATTGGCCATAACATAATGTAAGT	57.799	29.630	6.09	0.00	0.00	2.24
1610	3545	9.467258	CAGAAATTGGCCATAACATAATGTAAG	57.533	33.333	6.09	0.00	0.00	2.34
1611	3546	8.976353	ACAGAAATTGGCCATAACATAATGTAA	58.024	29.630	6.09	0.00	0.00	2.41
1612	3547	8.412456	CACAGAAATTGGCCATAACATAATGTA	58.588	33.333	6.09	0.00	0.00	2.29
1613	3548	7.267128	CACAGAAATTGGCCATAACATAATGT	58.733	34.615	6.09	1.69	0.00	2.71
1614	3549	6.201425	GCACAGAAATTGGCCATAACATAATG	59.799	38.462	6.09	0.53	0.00	1.90
1625	3560	1.615392	AGTTGAGCACAGAAATTGGCC	59.385	47.619	0.00	0.00	0.00	5.36
1663	3601	1.451651	CAAAACCACAGAATTTCGCGC	59.548	47.619	0.00	0.00	0.00	6.86
1957	3895	8.734386	AGTCCAAAAATGAGATTGAAGTGATAC	58.266	33.333	0.00	0.00	0.00	2.24
1989	3927	7.823635	AGATAACTCCTACCCTATCAACTACA	58.176	38.462	0.00	0.00	0.00	2.74
2084	4022	2.953648	CCAGCTAAATCATGATGTGCCA	59.046	45.455	9.46	0.00	0.00	4.92
2361	4300	7.947890	AGGGGTGTTCAATAGAAATTTAGTGAA	59.052	33.333	0.85	0.85	35.86	3.18
2602	4557	4.335647	CACCGGGCAAGCTCCAGT	62.336	66.667	6.32	0.00	0.00	4.00
3218	5184	5.049267	GCAGAAAAATACCAGACGGTTTACA	60.049	40.000	0.00	0.00	46.31	2.41
3578	5545	0.773644	AGGTTGAGGAGTTGGCACAT	59.226	50.000	0.00	0.00	39.30	3.21
3579	5546	0.179020	CAGGTTGAGGAGTTGGCACA	60.179	55.000	0.00	0.00	0.00	4.57
3698	5665	2.867109	AGCATTAGAGTTGGCAGTGT	57.133	45.000	0.00	0.00	0.00	3.55
3741	5708	0.809241	GAGGCACTGAAGCATCCGAG	60.809	60.000	0.00	0.00	41.55	4.63
3917	5884	9.476202	AAGAATACCAAAGCATTAAAAAGTGAC	57.524	29.630	0.00	0.00	0.00	3.67
4005	5972	3.841255	CTGAAGACTTCCTTTCCCTAGGT	59.159	47.826	12.66	0.00	36.63	3.08
4318	6285	5.519927	CGGTTTGTTTCTGCTTTTCTTCATT	59.480	36.000	0.00	0.00	0.00	2.57
4353	6321	7.621683	AGAGGAGTAAGGAGTTGACATATTCTT	59.378	37.037	0.00	0.00	0.00	2.52
5254	7234	0.468226	TTGCAGACGACCCAAGTTCT	59.532	50.000	0.00	0.00	0.00	3.01
5691	7671	4.635223	GTCATGGATGATCTCGATTCCAA	58.365	43.478	4.84	0.00	41.36	3.53
5699	7679	3.648009	GTTCCTCGTCATGGATGATCTC	58.352	50.000	0.00	0.00	39.30	2.75
5720	7700	5.508153	CCCTGTATCACCTGAATAGAAGTCG	60.508	48.000	0.00	0.00	0.00	4.18
5875	7855	8.152898	TCTCATCTGAATCAAAGAAAGTTCTGA	58.847	33.333	0.00	0.00	37.65	3.27
5976	7956	0.469518	GTATCGGGTGCTACCTCCCT	60.470	60.000	5.48	0.00	41.64	4.20
6028	8008	3.908382	GCTTTCAGTTTCAACAGCATACG	59.092	43.478	0.00	0.00	0.00	3.06
6052	8032	1.344114	CTTTAGCAGGGCTTTTTGGCA	59.656	47.619	0.00	0.00	43.83	4.92
6174	8154	0.542938	TGCCACCTGTCTCTAGCTGT	60.543	55.000	0.00	0.00	0.00	4.40
6184	8164	2.508526	GTTCATCTTCTTGCCACCTGT	58.491	47.619	0.00	0.00	0.00	4.00
6241	8221	1.102978	GGTCTCTGCTGAGGTCTCTC	58.897	60.000	19.23	5.03	40.58	3.20
6332	8312	1.135972	AGCGACTTAAAATGTGCAGCG	60.136	47.619	0.00	0.00	0.00	5.18
6409	8389	8.244113	TGTGTTTCTATACTGTACACATCTCAG	58.756	37.037	7.64	0.00	42.78	3.35
6617	8635	3.181451	TGAGCTTGAGTCACAATGGAGTT	60.181	43.478	0.00	0.00	37.88	3.01
6702	8723	5.351458	ACAAATTTGAAGTGAAAGGAGCAC	58.649	37.500	24.64	0.00	36.53	4.40
6786	8815	2.153645	TCTGCTGCAATTGTACCACTG	58.846	47.619	7.40	0.00	0.00	3.66
6808	8837	6.037610	GTGATTAGAGTGACATCCATCCAAAC	59.962	42.308	0.00	0.00	0.00	2.93
7029	10572	7.729124	TCATCTGCATTCTATCTCATGGATA	57.271	36.000	0.00	0.00	35.98	2.59
7071	10615	3.503363	GTGCTGAATTGTCTCACCATCAA	59.497	43.478	0.00	0.00	0.00	2.57
7186	10730	6.379133	TGATAAGAAGAGTACACGTGGGTAAT	59.621	38.462	21.57	2.86	0.00	1.89
7188	10732	5.255687	TGATAAGAAGAGTACACGTGGGTA	58.744	41.667	21.57	0.44	0.00	3.69
7189	10733	4.084287	TGATAAGAAGAGTACACGTGGGT	58.916	43.478	21.57	3.05	0.00	4.51
7265	10820	9.676195	TGTTACATTATGACAACAAGTTTGATG	57.324	29.630	12.17	0.00	37.05	3.07

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.