Multiple sequence alignment - TraesCS3B01G284000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G284000 | chr3B | 100.000 | 2189 | 0 | 0 | 1 | 2189 | 454877790 | 454875602 | 0.000000e+00 | 4043 |
1 | TraesCS3B01G284000 | chr3A | 90.845 | 1835 | 78 | 26 | 396 | 2189 | 472906942 | 472905157 | 0.000000e+00 | 2375 |
2 | TraesCS3B01G284000 | chr3A | 98.276 | 58 | 1 | 0 | 288 | 345 | 472907421 | 472907364 | 3.840000e-18 | 102 |
3 | TraesCS3B01G284000 | chr3D | 88.610 | 1115 | 61 | 28 | 445 | 1520 | 354275514 | 354274427 | 0.000000e+00 | 1295 |
4 | TraesCS3B01G284000 | chr3D | 92.857 | 672 | 23 | 13 | 1521 | 2189 | 354274388 | 354273739 | 0.000000e+00 | 952 |
5 | TraesCS3B01G284000 | chr3D | 92.500 | 80 | 6 | 0 | 288 | 367 | 354277236 | 354277157 | 4.940000e-22 | 115 |
6 | TraesCS3B01G284000 | chr1B | 92.334 | 287 | 22 | 0 | 1 | 287 | 633868129 | 633868415 | 2.020000e-110 | 409 |
7 | TraesCS3B01G284000 | chr4A | 92.042 | 289 | 23 | 0 | 1 | 289 | 675810961 | 675811249 | 7.280000e-110 | 407 |
8 | TraesCS3B01G284000 | chr6B | 89.583 | 288 | 28 | 2 | 1 | 287 | 26868641 | 26868355 | 4.440000e-97 | 364 |
9 | TraesCS3B01G284000 | chr2D | 89.199 | 287 | 31 | 0 | 1 | 287 | 645415825 | 645415539 | 2.070000e-95 | 359 |
10 | TraesCS3B01G284000 | chr2B | 89.199 | 287 | 31 | 0 | 1 | 287 | 639238132 | 639238418 | 2.070000e-95 | 359 |
11 | TraesCS3B01G284000 | chr2A | 88.850 | 287 | 32 | 0 | 1 | 287 | 770945960 | 770945674 | 9.610000e-94 | 353 |
12 | TraesCS3B01G284000 | chr6D | 88.542 | 288 | 31 | 2 | 1 | 287 | 35503480 | 35503766 | 4.470000e-92 | 348 |
13 | TraesCS3B01G284000 | chr1D | 88.693 | 283 | 32 | 0 | 1 | 283 | 65084995 | 65085277 | 1.610000e-91 | 346 |
14 | TraesCS3B01G284000 | chr5D | 88.153 | 287 | 34 | 0 | 1 | 287 | 421378299 | 421378013 | 2.080000e-90 | 342 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G284000 | chr3B | 454875602 | 454877790 | 2188 | True | 4043.000000 | 4043 | 100.000000 | 1 | 2189 | 1 | chr3B.!!$R1 | 2188 |
1 | TraesCS3B01G284000 | chr3A | 472905157 | 472907421 | 2264 | True | 1238.500000 | 2375 | 94.560500 | 288 | 2189 | 2 | chr3A.!!$R1 | 1901 |
2 | TraesCS3B01G284000 | chr3D | 354273739 | 354277236 | 3497 | True | 787.333333 | 1295 | 91.322333 | 288 | 2189 | 3 | chr3D.!!$R1 | 1901 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
193 | 194 | 0.03438 | TCCTACTGTCCGAGGGTCTG | 60.034 | 60.0 | 0.0 | 0.0 | 33.27 | 3.51 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1596 | 3692 | 0.596082 | CGCCCGATGAAAAACTGGTT | 59.404 | 50.0 | 0.0 | 0.0 | 0.0 | 3.67 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
24 | 25 | 5.856126 | TCAAAGTAGTTAAGTTCATGCGG | 57.144 | 39.130 | 0.00 | 0.00 | 0.00 | 5.69 |
25 | 26 | 5.543714 | TCAAAGTAGTTAAGTTCATGCGGA | 58.456 | 37.500 | 0.00 | 0.00 | 0.00 | 5.54 |
26 | 27 | 5.407387 | TCAAAGTAGTTAAGTTCATGCGGAC | 59.593 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
27 | 28 | 4.803098 | AGTAGTTAAGTTCATGCGGACT | 57.197 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
28 | 29 | 5.909621 | AGTAGTTAAGTTCATGCGGACTA | 57.090 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
29 | 30 | 6.466885 | AGTAGTTAAGTTCATGCGGACTAT | 57.533 | 37.500 | 0.00 | 0.00 | 0.00 | 2.12 |
30 | 31 | 6.273825 | AGTAGTTAAGTTCATGCGGACTATG | 58.726 | 40.000 | 0.00 | 0.00 | 0.00 | 2.23 |
31 | 32 | 5.339008 | AGTTAAGTTCATGCGGACTATGA | 57.661 | 39.130 | 0.00 | 0.00 | 33.00 | 2.15 |
32 | 33 | 5.918608 | AGTTAAGTTCATGCGGACTATGAT | 58.081 | 37.500 | 0.00 | 0.00 | 34.76 | 2.45 |
33 | 34 | 7.050970 | AGTTAAGTTCATGCGGACTATGATA | 57.949 | 36.000 | 0.00 | 0.00 | 34.76 | 2.15 |
34 | 35 | 7.497595 | AGTTAAGTTCATGCGGACTATGATAA | 58.502 | 34.615 | 0.00 | 0.00 | 34.76 | 1.75 |
35 | 36 | 7.438459 | AGTTAAGTTCATGCGGACTATGATAAC | 59.562 | 37.037 | 0.00 | 0.00 | 34.76 | 1.89 |
36 | 37 | 4.632153 | AGTTCATGCGGACTATGATAACC | 58.368 | 43.478 | 0.00 | 0.00 | 34.76 | 2.85 |
37 | 38 | 4.345257 | AGTTCATGCGGACTATGATAACCT | 59.655 | 41.667 | 0.00 | 0.00 | 34.76 | 3.50 |
38 | 39 | 5.538813 | AGTTCATGCGGACTATGATAACCTA | 59.461 | 40.000 | 0.00 | 0.00 | 34.76 | 3.08 |
39 | 40 | 5.386958 | TCATGCGGACTATGATAACCTAC | 57.613 | 43.478 | 0.00 | 0.00 | 30.03 | 3.18 |
40 | 41 | 4.219944 | TCATGCGGACTATGATAACCTACC | 59.780 | 45.833 | 0.00 | 0.00 | 30.03 | 3.18 |
41 | 42 | 2.555325 | TGCGGACTATGATAACCTACCG | 59.445 | 50.000 | 0.00 | 0.00 | 41.63 | 4.02 |
42 | 43 | 3.213249 | CGGACTATGATAACCTACCGC | 57.787 | 52.381 | 0.00 | 0.00 | 33.24 | 5.68 |
43 | 44 | 2.094854 | CGGACTATGATAACCTACCGCC | 60.095 | 54.545 | 0.00 | 0.00 | 33.24 | 6.13 |
44 | 45 | 2.895404 | GGACTATGATAACCTACCGCCA | 59.105 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
45 | 46 | 3.056749 | GGACTATGATAACCTACCGCCAG | 60.057 | 52.174 | 0.00 | 0.00 | 0.00 | 4.85 |
46 | 47 | 2.897969 | ACTATGATAACCTACCGCCAGG | 59.102 | 50.000 | 0.00 | 0.00 | 45.13 | 4.45 |
47 | 48 | 1.056660 | ATGATAACCTACCGCCAGGG | 58.943 | 55.000 | 5.62 | 0.00 | 43.47 | 4.45 |
48 | 49 | 1.070957 | GATAACCTACCGCCAGGGC | 59.929 | 63.158 | 0.00 | 0.00 | 43.47 | 5.19 |
49 | 50 | 1.691337 | ATAACCTACCGCCAGGGCA | 60.691 | 57.895 | 11.42 | 0.00 | 43.47 | 5.36 |
50 | 51 | 1.060163 | ATAACCTACCGCCAGGGCAT | 61.060 | 55.000 | 11.42 | 0.00 | 43.47 | 4.40 |
51 | 52 | 1.276140 | TAACCTACCGCCAGGGCATT | 61.276 | 55.000 | 11.42 | 0.00 | 43.47 | 3.56 |
52 | 53 | 2.203209 | CCTACCGCCAGGGCATTC | 60.203 | 66.667 | 11.42 | 0.00 | 43.47 | 2.67 |
53 | 54 | 2.588877 | CTACCGCCAGGGCATTCG | 60.589 | 66.667 | 11.42 | 0.00 | 43.47 | 3.34 |
54 | 55 | 4.169696 | TACCGCCAGGGCATTCGG | 62.170 | 66.667 | 11.42 | 7.88 | 46.61 | 4.30 |
59 | 60 | 4.169696 | CCAGGGCATTCGGCGGTA | 62.170 | 66.667 | 7.21 | 0.00 | 46.16 | 4.02 |
60 | 61 | 2.588877 | CAGGGCATTCGGCGGTAG | 60.589 | 66.667 | 7.21 | 0.00 | 46.16 | 3.18 |
61 | 62 | 3.861797 | AGGGCATTCGGCGGTAGG | 61.862 | 66.667 | 7.21 | 0.00 | 46.16 | 3.18 |
62 | 63 | 4.171103 | GGGCATTCGGCGGTAGGT | 62.171 | 66.667 | 7.21 | 0.00 | 46.16 | 3.08 |
63 | 64 | 2.124860 | GGCATTCGGCGGTAGGTT | 60.125 | 61.111 | 7.21 | 0.00 | 46.16 | 3.50 |
64 | 65 | 1.747745 | GGCATTCGGCGGTAGGTTT | 60.748 | 57.895 | 7.21 | 0.00 | 46.16 | 3.27 |
65 | 66 | 0.462403 | GGCATTCGGCGGTAGGTTTA | 60.462 | 55.000 | 7.21 | 0.00 | 46.16 | 2.01 |
66 | 67 | 1.589803 | GCATTCGGCGGTAGGTTTAT | 58.410 | 50.000 | 7.21 | 0.00 | 0.00 | 1.40 |
67 | 68 | 1.263217 | GCATTCGGCGGTAGGTTTATG | 59.737 | 52.381 | 7.21 | 0.05 | 0.00 | 1.90 |
68 | 69 | 2.557317 | CATTCGGCGGTAGGTTTATGT | 58.443 | 47.619 | 7.21 | 0.00 | 0.00 | 2.29 |
69 | 70 | 2.012937 | TTCGGCGGTAGGTTTATGTG | 57.987 | 50.000 | 7.21 | 0.00 | 0.00 | 3.21 |
70 | 71 | 0.176219 | TCGGCGGTAGGTTTATGTGG | 59.824 | 55.000 | 7.21 | 0.00 | 0.00 | 4.17 |
71 | 72 | 0.812412 | CGGCGGTAGGTTTATGTGGG | 60.812 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
72 | 73 | 1.099295 | GGCGGTAGGTTTATGTGGGC | 61.099 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
73 | 74 | 0.107361 | GCGGTAGGTTTATGTGGGCT | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
74 | 75 | 1.139455 | GCGGTAGGTTTATGTGGGCTA | 59.861 | 52.381 | 0.00 | 0.00 | 0.00 | 3.93 |
75 | 76 | 2.830104 | CGGTAGGTTTATGTGGGCTAC | 58.170 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
76 | 77 | 2.484241 | CGGTAGGTTTATGTGGGCTACC | 60.484 | 54.545 | 0.00 | 0.00 | 33.89 | 3.18 |
77 | 78 | 2.484241 | GGTAGGTTTATGTGGGCTACCG | 60.484 | 54.545 | 0.00 | 0.00 | 40.75 | 4.02 |
88 | 89 | 2.047560 | GCTACCGCCGTGGACTTT | 60.048 | 61.111 | 4.58 | 0.00 | 42.00 | 2.66 |
89 | 90 | 2.388232 | GCTACCGCCGTGGACTTTG | 61.388 | 63.158 | 4.58 | 0.00 | 42.00 | 2.77 |
90 | 91 | 1.740296 | CTACCGCCGTGGACTTTGG | 60.740 | 63.158 | 4.58 | 0.00 | 42.00 | 3.28 |
91 | 92 | 3.887335 | TACCGCCGTGGACTTTGGC | 62.887 | 63.158 | 4.58 | 0.00 | 45.39 | 4.52 |
95 | 96 | 2.344500 | CCGTGGACTTTGGCGGTA | 59.656 | 61.111 | 0.00 | 0.00 | 39.41 | 4.02 |
96 | 97 | 1.740296 | CCGTGGACTTTGGCGGTAG | 60.740 | 63.158 | 0.00 | 0.00 | 39.41 | 3.18 |
97 | 98 | 1.740296 | CGTGGACTTTGGCGGTAGG | 60.740 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
98 | 99 | 1.373812 | GTGGACTTTGGCGGTAGGT | 59.626 | 57.895 | 0.00 | 0.00 | 0.00 | 3.08 |
99 | 100 | 0.609662 | GTGGACTTTGGCGGTAGGTA | 59.390 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
100 | 101 | 0.609662 | TGGACTTTGGCGGTAGGTAC | 59.390 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
101 | 102 | 0.459063 | GGACTTTGGCGGTAGGTACG | 60.459 | 60.000 | 0.00 | 0.00 | 0.00 | 3.67 |
102 | 103 | 0.244721 | GACTTTGGCGGTAGGTACGT | 59.755 | 55.000 | 0.00 | 0.00 | 0.00 | 3.57 |
103 | 104 | 1.472480 | GACTTTGGCGGTAGGTACGTA | 59.528 | 52.381 | 0.00 | 0.00 | 0.00 | 3.57 |
104 | 105 | 1.892474 | ACTTTGGCGGTAGGTACGTAA | 59.108 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
106 | 107 | 0.173255 | TTGGCGGTAGGTACGTAAGC | 59.827 | 55.000 | 12.95 | 12.95 | 45.62 | 3.09 |
107 | 108 | 0.964860 | TGGCGGTAGGTACGTAAGCA | 60.965 | 55.000 | 19.27 | 8.42 | 45.62 | 3.91 |
108 | 109 | 0.248784 | GGCGGTAGGTACGTAAGCAG | 60.249 | 60.000 | 19.27 | 3.83 | 45.62 | 4.24 |
109 | 110 | 0.869028 | GCGGTAGGTACGTAAGCAGC | 60.869 | 60.000 | 15.21 | 6.16 | 45.62 | 5.25 |
110 | 111 | 0.248784 | CGGTAGGTACGTAAGCAGCC | 60.249 | 60.000 | 0.00 | 0.00 | 45.62 | 4.85 |
111 | 112 | 0.248784 | GGTAGGTACGTAAGCAGCCG | 60.249 | 60.000 | 0.00 | 0.00 | 45.62 | 5.52 |
112 | 113 | 0.453390 | GTAGGTACGTAAGCAGCCGT | 59.547 | 55.000 | 0.00 | 0.78 | 45.62 | 5.68 |
113 | 114 | 1.135286 | GTAGGTACGTAAGCAGCCGTT | 60.135 | 52.381 | 0.00 | 0.00 | 45.62 | 4.44 |
114 | 115 | 1.176527 | AGGTACGTAAGCAGCCGTTA | 58.823 | 50.000 | 0.00 | 0.00 | 45.62 | 3.18 |
115 | 116 | 1.545582 | AGGTACGTAAGCAGCCGTTAA | 59.454 | 47.619 | 0.00 | 0.00 | 45.62 | 2.01 |
116 | 117 | 1.655597 | GGTACGTAAGCAGCCGTTAAC | 59.344 | 52.381 | 0.00 | 0.00 | 45.62 | 2.01 |
117 | 118 | 1.655597 | GTACGTAAGCAGCCGTTAACC | 59.344 | 52.381 | 0.00 | 0.00 | 45.62 | 2.85 |
118 | 119 | 1.010419 | ACGTAAGCAGCCGTTAACCG | 61.010 | 55.000 | 0.00 | 0.00 | 45.62 | 4.44 |
119 | 120 | 1.010419 | CGTAAGCAGCCGTTAACCGT | 61.010 | 55.000 | 0.00 | 0.00 | 33.66 | 4.83 |
120 | 121 | 1.150827 | GTAAGCAGCCGTTAACCGTT | 58.849 | 50.000 | 0.00 | 0.00 | 33.66 | 4.44 |
121 | 122 | 1.532437 | GTAAGCAGCCGTTAACCGTTT | 59.468 | 47.619 | 0.00 | 0.00 | 33.66 | 3.60 |
122 | 123 | 0.309612 | AAGCAGCCGTTAACCGTTTG | 59.690 | 50.000 | 0.00 | 0.00 | 33.66 | 2.93 |
123 | 124 | 0.533308 | AGCAGCCGTTAACCGTTTGA | 60.533 | 50.000 | 0.00 | 0.00 | 33.66 | 2.69 |
124 | 125 | 0.385098 | GCAGCCGTTAACCGTTTGAC | 60.385 | 55.000 | 0.00 | 0.00 | 33.66 | 3.18 |
125 | 126 | 0.111001 | CAGCCGTTAACCGTTTGACG | 60.111 | 55.000 | 2.97 | 2.97 | 42.71 | 4.35 |
151 | 152 | 4.382320 | GCACACCTACCGCCGGAA | 62.382 | 66.667 | 11.71 | 0.00 | 0.00 | 4.30 |
152 | 153 | 2.433664 | CACACCTACCGCCGGAAC | 60.434 | 66.667 | 11.71 | 0.00 | 0.00 | 3.62 |
153 | 154 | 3.698820 | ACACCTACCGCCGGAACC | 61.699 | 66.667 | 11.71 | 0.00 | 0.00 | 3.62 |
154 | 155 | 3.387947 | CACCTACCGCCGGAACCT | 61.388 | 66.667 | 11.71 | 0.00 | 0.00 | 3.50 |
155 | 156 | 3.387947 | ACCTACCGCCGGAACCTG | 61.388 | 66.667 | 11.71 | 0.00 | 0.00 | 4.00 |
156 | 157 | 3.387947 | CCTACCGCCGGAACCTGT | 61.388 | 66.667 | 11.71 | 0.00 | 0.00 | 4.00 |
157 | 158 | 2.125673 | CTACCGCCGGAACCTGTG | 60.126 | 66.667 | 11.71 | 0.00 | 0.00 | 3.66 |
158 | 159 | 3.659089 | CTACCGCCGGAACCTGTGG | 62.659 | 68.421 | 11.71 | 12.11 | 36.96 | 4.17 |
163 | 164 | 3.697747 | CCGGAACCTGTGGCGGTA | 61.698 | 66.667 | 0.00 | 0.00 | 35.89 | 4.02 |
164 | 165 | 2.125673 | CGGAACCTGTGGCGGTAG | 60.126 | 66.667 | 0.00 | 0.00 | 35.89 | 3.18 |
165 | 166 | 2.642254 | CGGAACCTGTGGCGGTAGA | 61.642 | 63.158 | 0.00 | 0.00 | 35.89 | 2.59 |
166 | 167 | 1.079336 | GGAACCTGTGGCGGTAGAC | 60.079 | 63.158 | 0.00 | 0.00 | 35.89 | 2.59 |
167 | 168 | 1.542187 | GGAACCTGTGGCGGTAGACT | 61.542 | 60.000 | 0.00 | 0.00 | 35.89 | 3.24 |
168 | 169 | 0.389948 | GAACCTGTGGCGGTAGACTG | 60.390 | 60.000 | 0.00 | 0.00 | 35.89 | 3.51 |
169 | 170 | 1.119574 | AACCTGTGGCGGTAGACTGT | 61.120 | 55.000 | 0.00 | 0.00 | 35.89 | 3.55 |
170 | 171 | 1.079819 | CCTGTGGCGGTAGACTGTG | 60.080 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
171 | 172 | 1.738099 | CTGTGGCGGTAGACTGTGC | 60.738 | 63.158 | 0.00 | 0.00 | 0.00 | 4.57 |
172 | 173 | 2.342279 | GTGGCGGTAGACTGTGCA | 59.658 | 61.111 | 0.00 | 0.00 | 0.00 | 4.57 |
173 | 174 | 1.301401 | GTGGCGGTAGACTGTGCAA | 60.301 | 57.895 | 0.00 | 0.00 | 0.00 | 4.08 |
174 | 175 | 0.673644 | GTGGCGGTAGACTGTGCAAT | 60.674 | 55.000 | 0.00 | 0.00 | 0.00 | 3.56 |
175 | 176 | 0.391130 | TGGCGGTAGACTGTGCAATC | 60.391 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
176 | 177 | 1.090052 | GGCGGTAGACTGTGCAATCC | 61.090 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
177 | 178 | 0.108138 | GCGGTAGACTGTGCAATCCT | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
178 | 179 | 1.136305 | GCGGTAGACTGTGCAATCCTA | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 2.94 |
179 | 180 | 2.810650 | CGGTAGACTGTGCAATCCTAC | 58.189 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
180 | 181 | 2.427453 | CGGTAGACTGTGCAATCCTACT | 59.573 | 50.000 | 13.12 | 2.26 | 32.56 | 2.57 |
181 | 182 | 3.735208 | CGGTAGACTGTGCAATCCTACTG | 60.735 | 52.174 | 13.12 | 11.43 | 32.56 | 2.74 |
182 | 183 | 3.195825 | GGTAGACTGTGCAATCCTACTGT | 59.804 | 47.826 | 13.12 | 0.00 | 32.56 | 3.55 |
183 | 184 | 3.601443 | AGACTGTGCAATCCTACTGTC | 57.399 | 47.619 | 0.00 | 0.00 | 42.51 | 3.51 |
184 | 185 | 2.234908 | AGACTGTGCAATCCTACTGTCC | 59.765 | 50.000 | 0.00 | 0.00 | 42.91 | 4.02 |
185 | 186 | 1.066858 | ACTGTGCAATCCTACTGTCCG | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
186 | 187 | 1.204704 | CTGTGCAATCCTACTGTCCGA | 59.795 | 52.381 | 0.00 | 0.00 | 0.00 | 4.55 |
187 | 188 | 1.204704 | TGTGCAATCCTACTGTCCGAG | 59.795 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
188 | 189 | 0.824109 | TGCAATCCTACTGTCCGAGG | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
189 | 190 | 0.105039 | GCAATCCTACTGTCCGAGGG | 59.895 | 60.000 | 0.00 | 0.00 | 33.27 | 4.30 |
190 | 191 | 1.486211 | CAATCCTACTGTCCGAGGGT | 58.514 | 55.000 | 0.00 | 0.00 | 33.27 | 4.34 |
191 | 192 | 1.409427 | CAATCCTACTGTCCGAGGGTC | 59.591 | 57.143 | 0.00 | 0.00 | 33.27 | 4.46 |
192 | 193 | 0.927767 | ATCCTACTGTCCGAGGGTCT | 59.072 | 55.000 | 0.00 | 0.00 | 33.27 | 3.85 |
193 | 194 | 0.034380 | TCCTACTGTCCGAGGGTCTG | 60.034 | 60.000 | 0.00 | 0.00 | 33.27 | 3.51 |
194 | 195 | 1.038130 | CCTACTGTCCGAGGGTCTGG | 61.038 | 65.000 | 0.00 | 0.00 | 0.00 | 3.86 |
195 | 196 | 1.668101 | CTACTGTCCGAGGGTCTGGC | 61.668 | 65.000 | 0.00 | 0.00 | 0.00 | 4.85 |
196 | 197 | 4.135153 | CTGTCCGAGGGTCTGGCG | 62.135 | 72.222 | 0.00 | 0.00 | 0.00 | 5.69 |
197 | 198 | 4.671590 | TGTCCGAGGGTCTGGCGA | 62.672 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
198 | 199 | 3.148279 | GTCCGAGGGTCTGGCGAT | 61.148 | 66.667 | 0.00 | 0.00 | 0.00 | 4.58 |
199 | 200 | 1.826921 | GTCCGAGGGTCTGGCGATA | 60.827 | 63.158 | 0.00 | 0.00 | 0.00 | 2.92 |
200 | 201 | 1.528542 | TCCGAGGGTCTGGCGATAG | 60.529 | 63.158 | 0.00 | 0.00 | 0.00 | 2.08 |
201 | 202 | 1.828660 | CCGAGGGTCTGGCGATAGT | 60.829 | 63.158 | 0.00 | 0.00 | 39.35 | 2.12 |
202 | 203 | 0.536687 | CCGAGGGTCTGGCGATAGTA | 60.537 | 60.000 | 0.00 | 0.00 | 39.35 | 1.82 |
203 | 204 | 1.315690 | CGAGGGTCTGGCGATAGTAA | 58.684 | 55.000 | 0.00 | 0.00 | 39.35 | 2.24 |
204 | 205 | 1.679680 | CGAGGGTCTGGCGATAGTAAA | 59.320 | 52.381 | 0.00 | 0.00 | 39.35 | 2.01 |
205 | 206 | 2.100252 | CGAGGGTCTGGCGATAGTAAAA | 59.900 | 50.000 | 0.00 | 0.00 | 39.35 | 1.52 |
206 | 207 | 3.718815 | GAGGGTCTGGCGATAGTAAAAG | 58.281 | 50.000 | 0.00 | 0.00 | 39.35 | 2.27 |
207 | 208 | 2.434702 | AGGGTCTGGCGATAGTAAAAGG | 59.565 | 50.000 | 0.00 | 0.00 | 39.35 | 3.11 |
208 | 209 | 2.484947 | GGGTCTGGCGATAGTAAAAGGG | 60.485 | 54.545 | 0.00 | 0.00 | 39.35 | 3.95 |
209 | 210 | 2.169978 | GGTCTGGCGATAGTAAAAGGGT | 59.830 | 50.000 | 0.00 | 0.00 | 39.35 | 4.34 |
210 | 211 | 3.455327 | GTCTGGCGATAGTAAAAGGGTC | 58.545 | 50.000 | 0.00 | 0.00 | 39.35 | 4.46 |
211 | 212 | 3.101437 | TCTGGCGATAGTAAAAGGGTCA | 58.899 | 45.455 | 0.00 | 0.00 | 39.35 | 4.02 |
212 | 213 | 3.516300 | TCTGGCGATAGTAAAAGGGTCAA | 59.484 | 43.478 | 0.00 | 0.00 | 39.35 | 3.18 |
213 | 214 | 4.020039 | TCTGGCGATAGTAAAAGGGTCAAA | 60.020 | 41.667 | 0.00 | 0.00 | 39.35 | 2.69 |
214 | 215 | 4.850680 | TGGCGATAGTAAAAGGGTCAAAT | 58.149 | 39.130 | 0.00 | 0.00 | 39.35 | 2.32 |
215 | 216 | 4.879545 | TGGCGATAGTAAAAGGGTCAAATC | 59.120 | 41.667 | 0.00 | 0.00 | 39.35 | 2.17 |
216 | 217 | 5.123936 | GGCGATAGTAAAAGGGTCAAATCT | 58.876 | 41.667 | 0.00 | 0.00 | 39.35 | 2.40 |
217 | 218 | 5.589050 | GGCGATAGTAAAAGGGTCAAATCTT | 59.411 | 40.000 | 0.00 | 0.00 | 39.35 | 2.40 |
218 | 219 | 6.458342 | GGCGATAGTAAAAGGGTCAAATCTTG | 60.458 | 42.308 | 0.00 | 0.00 | 39.35 | 3.02 |
219 | 220 | 6.315393 | GCGATAGTAAAAGGGTCAAATCTTGA | 59.685 | 38.462 | 0.00 | 0.00 | 36.20 | 3.02 |
220 | 221 | 7.148306 | GCGATAGTAAAAGGGTCAAATCTTGAA | 60.148 | 37.037 | 0.00 | 0.00 | 39.19 | 2.69 |
221 | 222 | 8.726988 | CGATAGTAAAAGGGTCAAATCTTGAAA | 58.273 | 33.333 | 0.00 | 0.00 | 42.15 | 2.69 |
224 | 225 | 8.250143 | AGTAAAAGGGTCAAATCTTGAAATGT | 57.750 | 30.769 | 0.00 | 0.00 | 42.15 | 2.71 |
225 | 226 | 8.704668 | AGTAAAAGGGTCAAATCTTGAAATGTT | 58.295 | 29.630 | 0.00 | 0.00 | 42.15 | 2.71 |
226 | 227 | 9.325198 | GTAAAAGGGTCAAATCTTGAAATGTTT | 57.675 | 29.630 | 0.00 | 0.00 | 42.15 | 2.83 |
227 | 228 | 8.806429 | AAAAGGGTCAAATCTTGAAATGTTTT | 57.194 | 26.923 | 0.00 | 0.00 | 42.15 | 2.43 |
228 | 229 | 8.437360 | AAAGGGTCAAATCTTGAAATGTTTTC | 57.563 | 30.769 | 0.00 | 0.00 | 42.15 | 2.29 |
229 | 230 | 7.123355 | AGGGTCAAATCTTGAAATGTTTTCA | 57.877 | 32.000 | 0.00 | 0.00 | 42.15 | 2.69 |
230 | 231 | 7.563906 | AGGGTCAAATCTTGAAATGTTTTCAA | 58.436 | 30.769 | 13.15 | 13.15 | 42.15 | 2.69 |
231 | 232 | 8.046107 | AGGGTCAAATCTTGAAATGTTTTCAAA | 58.954 | 29.630 | 14.33 | 7.88 | 42.15 | 2.69 |
232 | 233 | 8.122330 | GGGTCAAATCTTGAAATGTTTTCAAAC | 58.878 | 33.333 | 14.33 | 9.42 | 42.15 | 2.93 |
233 | 234 | 8.882736 | GGTCAAATCTTGAAATGTTTTCAAACT | 58.117 | 29.630 | 14.33 | 4.60 | 42.15 | 2.66 |
234 | 235 | 9.693157 | GTCAAATCTTGAAATGTTTTCAAACTG | 57.307 | 29.630 | 14.33 | 9.94 | 42.15 | 3.16 |
235 | 236 | 9.650539 | TCAAATCTTGAAATGTTTTCAAACTGA | 57.349 | 25.926 | 14.33 | 9.88 | 37.89 | 3.41 |
240 | 241 | 9.650539 | TCTTGAAATGTTTTCAAACTGAAATCA | 57.349 | 25.926 | 14.33 | 12.74 | 44.75 | 2.57 |
241 | 242 | 9.910511 | CTTGAAATGTTTTCAAACTGAAATCAG | 57.089 | 29.630 | 14.33 | 8.84 | 44.75 | 2.90 |
242 | 243 | 9.650539 | TTGAAATGTTTTCAAACTGAAATCAGA | 57.349 | 25.926 | 16.93 | 0.00 | 44.75 | 3.27 |
243 | 244 | 9.820725 | TGAAATGTTTTCAAACTGAAATCAGAT | 57.179 | 25.926 | 16.93 | 2.26 | 44.75 | 2.90 |
246 | 247 | 9.688592 | AATGTTTTCAAACTGAAATCAGATCTC | 57.311 | 29.630 | 16.93 | 0.99 | 44.75 | 2.75 |
247 | 248 | 7.355017 | TGTTTTCAAACTGAAATCAGATCTCG | 58.645 | 34.615 | 16.93 | 1.60 | 44.75 | 4.04 |
248 | 249 | 7.226523 | TGTTTTCAAACTGAAATCAGATCTCGA | 59.773 | 33.333 | 16.93 | 0.00 | 44.75 | 4.04 |
249 | 250 | 7.728847 | TTTCAAACTGAAATCAGATCTCGAA | 57.271 | 32.000 | 16.93 | 8.74 | 46.59 | 3.71 |
250 | 251 | 7.912056 | TTCAAACTGAAATCAGATCTCGAAT | 57.088 | 32.000 | 16.93 | 0.00 | 46.59 | 3.34 |
251 | 252 | 7.912056 | TCAAACTGAAATCAGATCTCGAATT | 57.088 | 32.000 | 16.93 | 0.00 | 46.59 | 2.17 |
252 | 253 | 8.327941 | TCAAACTGAAATCAGATCTCGAATTT | 57.672 | 30.769 | 16.93 | 0.00 | 46.59 | 1.82 |
253 | 254 | 8.232513 | TCAAACTGAAATCAGATCTCGAATTTG | 58.767 | 33.333 | 16.93 | 12.93 | 46.59 | 2.32 |
254 | 255 | 7.678947 | AACTGAAATCAGATCTCGAATTTGT | 57.321 | 32.000 | 16.93 | 3.44 | 46.59 | 2.83 |
255 | 256 | 7.678947 | ACTGAAATCAGATCTCGAATTTGTT | 57.321 | 32.000 | 16.93 | 0.00 | 46.59 | 2.83 |
256 | 257 | 8.103948 | ACTGAAATCAGATCTCGAATTTGTTT | 57.896 | 30.769 | 16.93 | 2.81 | 46.59 | 2.83 |
257 | 258 | 8.019669 | ACTGAAATCAGATCTCGAATTTGTTTG | 58.980 | 33.333 | 16.93 | 3.55 | 46.59 | 2.93 |
258 | 259 | 8.098220 | TGAAATCAGATCTCGAATTTGTTTGA | 57.902 | 30.769 | 10.48 | 0.00 | 0.00 | 2.69 |
259 | 260 | 8.017373 | TGAAATCAGATCTCGAATTTGTTTGAC | 58.983 | 33.333 | 10.48 | 0.05 | 0.00 | 3.18 |
260 | 261 | 7.439157 | AATCAGATCTCGAATTTGTTTGACA | 57.561 | 32.000 | 0.00 | 0.00 | 0.00 | 3.58 |
261 | 262 | 6.859420 | TCAGATCTCGAATTTGTTTGACAA | 57.141 | 33.333 | 0.00 | 0.00 | 36.11 | 3.18 |
276 | 277 | 3.495670 | TGACAAAAGGGTCAAAACACG | 57.504 | 42.857 | 0.00 | 0.00 | 44.34 | 4.49 |
277 | 278 | 2.164624 | TGACAAAAGGGTCAAAACACGG | 59.835 | 45.455 | 0.00 | 0.00 | 44.34 | 4.94 |
278 | 279 | 2.424246 | GACAAAAGGGTCAAAACACGGA | 59.576 | 45.455 | 0.00 | 0.00 | 37.73 | 4.69 |
279 | 280 | 2.826725 | ACAAAAGGGTCAAAACACGGAA | 59.173 | 40.909 | 0.00 | 0.00 | 32.44 | 4.30 |
280 | 281 | 3.449377 | ACAAAAGGGTCAAAACACGGAAT | 59.551 | 39.130 | 0.00 | 0.00 | 32.44 | 3.01 |
281 | 282 | 4.081365 | ACAAAAGGGTCAAAACACGGAATT | 60.081 | 37.500 | 0.00 | 0.00 | 32.44 | 2.17 |
282 | 283 | 4.746535 | AAAGGGTCAAAACACGGAATTT | 57.253 | 36.364 | 0.00 | 0.00 | 32.44 | 1.82 |
283 | 284 | 3.726291 | AGGGTCAAAACACGGAATTTG | 57.274 | 42.857 | 3.53 | 3.53 | 37.77 | 2.32 |
284 | 285 | 2.364002 | AGGGTCAAAACACGGAATTTGG | 59.636 | 45.455 | 8.54 | 0.00 | 37.19 | 3.28 |
285 | 286 | 2.131972 | GGTCAAAACACGGAATTTGGC | 58.868 | 47.619 | 8.54 | 7.04 | 39.72 | 4.52 |
286 | 287 | 2.131972 | GTCAAAACACGGAATTTGGCC | 58.868 | 47.619 | 0.00 | 0.00 | 35.62 | 5.36 |
353 | 742 | 1.599071 | GCAGCAGCTATATTGCGAACA | 59.401 | 47.619 | 0.00 | 0.00 | 45.98 | 3.18 |
358 | 747 | 3.496130 | GCAGCTATATTGCGAACAGATGT | 59.504 | 43.478 | 3.46 | 0.00 | 38.13 | 3.06 |
369 | 758 | 3.617669 | CGAACAGATGTTTGGTCACAAC | 58.382 | 45.455 | 5.21 | 0.00 | 38.56 | 3.32 |
371 | 760 | 4.552767 | CGAACAGATGTTTGGTCACAACTC | 60.553 | 45.833 | 5.21 | 0.00 | 38.56 | 3.01 |
373 | 762 | 3.627577 | ACAGATGTTTGGTCACAACTCAC | 59.372 | 43.478 | 0.00 | 0.00 | 36.06 | 3.51 |
374 | 763 | 3.627123 | CAGATGTTTGGTCACAACTCACA | 59.373 | 43.478 | 0.00 | 0.00 | 36.06 | 3.58 |
375 | 764 | 4.096231 | CAGATGTTTGGTCACAACTCACAA | 59.904 | 41.667 | 0.00 | 0.00 | 36.06 | 3.33 |
376 | 765 | 4.336433 | AGATGTTTGGTCACAACTCACAAG | 59.664 | 41.667 | 0.00 | 0.00 | 36.06 | 3.16 |
377 | 766 | 3.417101 | TGTTTGGTCACAACTCACAAGT | 58.583 | 40.909 | 0.00 | 0.00 | 36.06 | 3.16 |
378 | 767 | 4.580868 | TGTTTGGTCACAACTCACAAGTA | 58.419 | 39.130 | 0.00 | 0.00 | 36.06 | 2.24 |
379 | 768 | 4.634004 | TGTTTGGTCACAACTCACAAGTAG | 59.366 | 41.667 | 0.00 | 0.00 | 36.06 | 2.57 |
380 | 769 | 4.746535 | TTGGTCACAACTCACAAGTAGA | 57.253 | 40.909 | 0.00 | 0.00 | 33.48 | 2.59 |
381 | 770 | 4.054780 | TGGTCACAACTCACAAGTAGAC | 57.945 | 45.455 | 0.00 | 0.00 | 33.48 | 2.59 |
382 | 771 | 3.704566 | TGGTCACAACTCACAAGTAGACT | 59.295 | 43.478 | 0.00 | 0.00 | 34.70 | 3.24 |
383 | 772 | 4.891168 | TGGTCACAACTCACAAGTAGACTA | 59.109 | 41.667 | 0.00 | 0.00 | 34.70 | 2.59 |
384 | 773 | 5.361571 | TGGTCACAACTCACAAGTAGACTAA | 59.638 | 40.000 | 0.00 | 0.00 | 34.70 | 2.24 |
385 | 774 | 6.127281 | TGGTCACAACTCACAAGTAGACTAAA | 60.127 | 38.462 | 0.00 | 0.00 | 34.70 | 1.85 |
386 | 775 | 6.421202 | GGTCACAACTCACAAGTAGACTAAAG | 59.579 | 42.308 | 0.00 | 0.00 | 34.70 | 1.85 |
387 | 776 | 7.201145 | GTCACAACTCACAAGTAGACTAAAGA | 58.799 | 38.462 | 0.00 | 0.00 | 33.48 | 2.52 |
388 | 777 | 7.380065 | GTCACAACTCACAAGTAGACTAAAGAG | 59.620 | 40.741 | 0.00 | 0.00 | 33.48 | 2.85 |
389 | 778 | 7.284716 | TCACAACTCACAAGTAGACTAAAGAGA | 59.715 | 37.037 | 10.39 | 0.00 | 33.48 | 3.10 |
390 | 779 | 7.921214 | CACAACTCACAAGTAGACTAAAGAGAA | 59.079 | 37.037 | 10.39 | 0.00 | 33.48 | 2.87 |
391 | 780 | 8.475639 | ACAACTCACAAGTAGACTAAAGAGAAA | 58.524 | 33.333 | 10.39 | 0.00 | 33.48 | 2.52 |
392 | 781 | 8.973378 | CAACTCACAAGTAGACTAAAGAGAAAG | 58.027 | 37.037 | 10.39 | 0.00 | 33.48 | 2.62 |
393 | 782 | 7.149307 | ACTCACAAGTAGACTAAAGAGAAAGC | 58.851 | 38.462 | 10.39 | 0.00 | 32.59 | 3.51 |
394 | 783 | 6.150318 | TCACAAGTAGACTAAAGAGAAAGCG | 58.850 | 40.000 | 0.00 | 0.00 | 0.00 | 4.68 |
413 | 802 | 2.073816 | CGACCGTGGCTTCAAGTAAAT | 58.926 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
453 | 842 | 4.744570 | CTTGTAAGCTGACGTCCTGATAA | 58.255 | 43.478 | 14.12 | 0.90 | 0.00 | 1.75 |
491 | 2487 | 4.529769 | TCTTTCTGATGCTTCTCCTTCTCA | 59.470 | 41.667 | 0.88 | 0.00 | 0.00 | 3.27 |
495 | 2491 | 4.654724 | TCTGATGCTTCTCCTTCTCATGAT | 59.345 | 41.667 | 0.00 | 0.00 | 0.00 | 2.45 |
504 | 2500 | 1.434622 | CTTCTCATGATGCGGCGCTT | 61.435 | 55.000 | 33.26 | 27.17 | 0.00 | 4.68 |
509 | 2505 | 1.746615 | ATGATGCGGCGCTTGTTCT | 60.747 | 52.632 | 33.26 | 10.23 | 0.00 | 3.01 |
518 | 2514 | 0.811616 | GCGCTTGTTCTGGGATCGAT | 60.812 | 55.000 | 0.00 | 0.00 | 0.00 | 3.59 |
525 | 2521 | 4.694760 | TGTTCTGGGATCGATGAATGAT | 57.305 | 40.909 | 0.54 | 0.00 | 0.00 | 2.45 |
550 | 2546 | 4.087892 | GGCTGCTCGCTTCCAGGA | 62.088 | 66.667 | 0.00 | 0.00 | 39.13 | 3.86 |
574 | 2570 | 0.980423 | TCACCCGATCAACACATCCA | 59.020 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
577 | 2573 | 2.754552 | CACCCGATCAACACATCCAATT | 59.245 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
716 | 2723 | 0.663568 | CAGAGTGCTTTGCTTGCAGC | 60.664 | 55.000 | 0.00 | 1.70 | 41.41 | 5.25 |
743 | 2750 | 2.747855 | CGGGAGGAGCAAAGGCAC | 60.748 | 66.667 | 0.00 | 0.00 | 44.61 | 5.01 |
746 | 2753 | 0.613012 | GGGAGGAGCAAAGGCACATT | 60.613 | 55.000 | 0.00 | 0.00 | 44.61 | 2.71 |
833 | 2840 | 1.474077 | GCCAGACTGTAAAATGCAGGG | 59.526 | 52.381 | 0.93 | 0.00 | 38.22 | 4.45 |
856 | 2866 | 0.257039 | CCCATTCCCCAACTCCTCTG | 59.743 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
871 | 2881 | 6.798427 | ACTCCTCTGTTCATCAGCTATAAA | 57.202 | 37.500 | 0.00 | 0.00 | 43.32 | 1.40 |
878 | 2888 | 4.201773 | TGTTCATCAGCTATAAAAACGCGG | 60.202 | 41.667 | 12.47 | 0.00 | 0.00 | 6.46 |
910 | 2920 | 1.056660 | TTCCCTCCGGCATTATCTCC | 58.943 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
939 | 2949 | 3.997064 | CTCGCCTCCTCCGCAGTTG | 62.997 | 68.421 | 0.00 | 0.00 | 0.00 | 3.16 |
1131 | 3158 | 1.974343 | AGCTGTCTCCTCGTCGCTT | 60.974 | 57.895 | 0.00 | 0.00 | 0.00 | 4.68 |
1201 | 3230 | 1.541310 | CCACTGAGTTGGCCGAGGTA | 61.541 | 60.000 | 0.00 | 0.00 | 0.00 | 3.08 |
1371 | 3429 | 2.037251 | AGTCGATGCTGTTAGTGTTGGT | 59.963 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
1443 | 3501 | 9.107177 | AGATATTTGTCAGAATTTGCTCTACTG | 57.893 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
1576 | 3672 | 2.433868 | TCGACACCTTCTTTTCTCGG | 57.566 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1596 | 3692 | 3.616821 | CGGATCATTTCTGCACGAAGTTA | 59.383 | 43.478 | 0.00 | 0.00 | 41.61 | 2.24 |
1995 | 4094 | 1.803366 | GCCTCGTTCCGTATCCCGAT | 61.803 | 60.000 | 0.00 | 0.00 | 39.56 | 4.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 6.653320 | TCCGCATGAACTTAACTACTTTGATT | 59.347 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
1 | 2 | 6.092259 | GTCCGCATGAACTTAACTACTTTGAT | 59.908 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
2 | 3 | 5.407387 | GTCCGCATGAACTTAACTACTTTGA | 59.593 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3 | 4 | 5.408604 | AGTCCGCATGAACTTAACTACTTTG | 59.591 | 40.000 | 0.00 | 0.00 | 0.00 | 2.77 |
4 | 5 | 5.548406 | AGTCCGCATGAACTTAACTACTTT | 58.452 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
5 | 6 | 5.148651 | AGTCCGCATGAACTTAACTACTT | 57.851 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
6 | 7 | 4.803098 | AGTCCGCATGAACTTAACTACT | 57.197 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
7 | 8 | 6.270815 | TCATAGTCCGCATGAACTTAACTAC | 58.729 | 40.000 | 0.00 | 0.00 | 29.55 | 2.73 |
8 | 9 | 6.459670 | TCATAGTCCGCATGAACTTAACTA | 57.540 | 37.500 | 0.00 | 0.00 | 29.55 | 2.24 |
9 | 10 | 5.339008 | TCATAGTCCGCATGAACTTAACT | 57.661 | 39.130 | 0.00 | 0.00 | 29.55 | 2.24 |
10 | 11 | 7.307219 | GGTTATCATAGTCCGCATGAACTTAAC | 60.307 | 40.741 | 0.00 | 2.72 | 36.08 | 2.01 |
11 | 12 | 6.704493 | GGTTATCATAGTCCGCATGAACTTAA | 59.296 | 38.462 | 0.00 | 0.00 | 36.08 | 1.85 |
12 | 13 | 6.041637 | AGGTTATCATAGTCCGCATGAACTTA | 59.958 | 38.462 | 0.00 | 0.00 | 36.08 | 2.24 |
13 | 14 | 5.057149 | GGTTATCATAGTCCGCATGAACTT | 58.943 | 41.667 | 0.00 | 0.00 | 36.08 | 2.66 |
14 | 15 | 4.345257 | AGGTTATCATAGTCCGCATGAACT | 59.655 | 41.667 | 0.00 | 0.00 | 36.08 | 3.01 |
15 | 16 | 4.632153 | AGGTTATCATAGTCCGCATGAAC | 58.368 | 43.478 | 0.00 | 0.00 | 36.08 | 3.18 |
16 | 17 | 4.955811 | AGGTTATCATAGTCCGCATGAA | 57.044 | 40.909 | 0.00 | 0.00 | 36.08 | 2.57 |
17 | 18 | 4.219944 | GGTAGGTTATCATAGTCCGCATGA | 59.780 | 45.833 | 0.00 | 0.00 | 36.86 | 3.07 |
18 | 19 | 4.495422 | GGTAGGTTATCATAGTCCGCATG | 58.505 | 47.826 | 0.00 | 0.00 | 0.00 | 4.06 |
19 | 20 | 3.192844 | CGGTAGGTTATCATAGTCCGCAT | 59.807 | 47.826 | 0.00 | 0.00 | 0.00 | 4.73 |
20 | 21 | 2.555325 | CGGTAGGTTATCATAGTCCGCA | 59.445 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
21 | 22 | 3.213249 | CGGTAGGTTATCATAGTCCGC | 57.787 | 52.381 | 0.00 | 0.00 | 0.00 | 5.54 |
22 | 23 | 2.094854 | GGCGGTAGGTTATCATAGTCCG | 60.095 | 54.545 | 0.00 | 0.00 | 39.71 | 4.79 |
23 | 24 | 2.895404 | TGGCGGTAGGTTATCATAGTCC | 59.105 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
24 | 25 | 3.056749 | CCTGGCGGTAGGTTATCATAGTC | 60.057 | 52.174 | 0.00 | 0.00 | 32.99 | 2.59 |
25 | 26 | 2.897969 | CCTGGCGGTAGGTTATCATAGT | 59.102 | 50.000 | 0.00 | 0.00 | 32.99 | 2.12 |
26 | 27 | 2.233922 | CCCTGGCGGTAGGTTATCATAG | 59.766 | 54.545 | 0.00 | 0.00 | 36.02 | 2.23 |
27 | 28 | 2.253610 | CCCTGGCGGTAGGTTATCATA | 58.746 | 52.381 | 0.00 | 0.00 | 36.02 | 2.15 |
28 | 29 | 1.056660 | CCCTGGCGGTAGGTTATCAT | 58.943 | 55.000 | 0.00 | 0.00 | 36.02 | 2.45 |
29 | 30 | 1.692173 | GCCCTGGCGGTAGGTTATCA | 61.692 | 60.000 | 0.00 | 0.00 | 36.02 | 2.15 |
30 | 31 | 1.070957 | GCCCTGGCGGTAGGTTATC | 59.929 | 63.158 | 0.00 | 0.00 | 36.02 | 1.75 |
31 | 32 | 1.060163 | ATGCCCTGGCGGTAGGTTAT | 61.060 | 55.000 | 3.32 | 0.00 | 45.51 | 1.89 |
32 | 33 | 1.276140 | AATGCCCTGGCGGTAGGTTA | 61.276 | 55.000 | 3.32 | 0.00 | 45.51 | 2.85 |
33 | 34 | 2.552231 | GAATGCCCTGGCGGTAGGTT | 62.552 | 60.000 | 3.32 | 0.00 | 45.51 | 3.50 |
34 | 35 | 3.015145 | AATGCCCTGGCGGTAGGT | 61.015 | 61.111 | 3.32 | 0.00 | 45.51 | 3.08 |
35 | 36 | 2.203209 | GAATGCCCTGGCGGTAGG | 60.203 | 66.667 | 3.32 | 0.00 | 45.51 | 3.18 |
36 | 37 | 2.588877 | CGAATGCCCTGGCGGTAG | 60.589 | 66.667 | 3.32 | 0.00 | 45.51 | 3.18 |
37 | 38 | 4.169696 | CCGAATGCCCTGGCGGTA | 62.170 | 66.667 | 3.32 | 0.00 | 45.51 | 4.02 |
42 | 43 | 4.169696 | TACCGCCGAATGCCCTGG | 62.170 | 66.667 | 0.00 | 0.00 | 36.24 | 4.45 |
43 | 44 | 2.588877 | CTACCGCCGAATGCCCTG | 60.589 | 66.667 | 0.00 | 0.00 | 36.24 | 4.45 |
44 | 45 | 3.861797 | CCTACCGCCGAATGCCCT | 61.862 | 66.667 | 0.00 | 0.00 | 36.24 | 5.19 |
45 | 46 | 3.692370 | AACCTACCGCCGAATGCCC | 62.692 | 63.158 | 0.00 | 0.00 | 36.24 | 5.36 |
46 | 47 | 0.462403 | TAAACCTACCGCCGAATGCC | 60.462 | 55.000 | 0.00 | 0.00 | 36.24 | 4.40 |
47 | 48 | 1.263217 | CATAAACCTACCGCCGAATGC | 59.737 | 52.381 | 0.00 | 0.00 | 0.00 | 3.56 |
48 | 49 | 2.286833 | CACATAAACCTACCGCCGAATG | 59.713 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
49 | 50 | 2.557317 | CACATAAACCTACCGCCGAAT | 58.443 | 47.619 | 0.00 | 0.00 | 0.00 | 3.34 |
50 | 51 | 1.405797 | CCACATAAACCTACCGCCGAA | 60.406 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
51 | 52 | 0.176219 | CCACATAAACCTACCGCCGA | 59.824 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
52 | 53 | 0.812412 | CCCACATAAACCTACCGCCG | 60.812 | 60.000 | 0.00 | 0.00 | 0.00 | 6.46 |
53 | 54 | 1.099295 | GCCCACATAAACCTACCGCC | 61.099 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
54 | 55 | 0.107361 | AGCCCACATAAACCTACCGC | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
55 | 56 | 2.484241 | GGTAGCCCACATAAACCTACCG | 60.484 | 54.545 | 0.00 | 0.00 | 38.82 | 4.02 |
56 | 57 | 2.484241 | CGGTAGCCCACATAAACCTACC | 60.484 | 54.545 | 0.00 | 0.00 | 42.80 | 3.18 |
57 | 58 | 2.830104 | CGGTAGCCCACATAAACCTAC | 58.170 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
58 | 59 | 1.139455 | GCGGTAGCCCACATAAACCTA | 59.861 | 52.381 | 0.00 | 0.00 | 37.42 | 3.08 |
59 | 60 | 0.107361 | GCGGTAGCCCACATAAACCT | 60.107 | 55.000 | 0.00 | 0.00 | 37.42 | 3.50 |
60 | 61 | 2.400911 | GCGGTAGCCCACATAAACC | 58.599 | 57.895 | 0.00 | 0.00 | 37.42 | 3.27 |
71 | 72 | 2.047560 | AAAGTCCACGGCGGTAGC | 60.048 | 61.111 | 13.24 | 0.00 | 44.18 | 3.58 |
72 | 73 | 1.740296 | CCAAAGTCCACGGCGGTAG | 60.740 | 63.158 | 13.24 | 0.00 | 35.57 | 3.18 |
73 | 74 | 2.344500 | CCAAAGTCCACGGCGGTA | 59.656 | 61.111 | 13.24 | 0.00 | 35.57 | 4.02 |
79 | 80 | 1.740296 | CCTACCGCCAAAGTCCACG | 60.740 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
80 | 81 | 0.609662 | TACCTACCGCCAAAGTCCAC | 59.390 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
81 | 82 | 0.609662 | GTACCTACCGCCAAAGTCCA | 59.390 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
82 | 83 | 0.459063 | CGTACCTACCGCCAAAGTCC | 60.459 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
83 | 84 | 0.244721 | ACGTACCTACCGCCAAAGTC | 59.755 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
84 | 85 | 1.544724 | TACGTACCTACCGCCAAAGT | 58.455 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
85 | 86 | 2.533266 | CTTACGTACCTACCGCCAAAG | 58.467 | 52.381 | 0.00 | 0.00 | 0.00 | 2.77 |
86 | 87 | 1.404047 | GCTTACGTACCTACCGCCAAA | 60.404 | 52.381 | 0.00 | 0.00 | 0.00 | 3.28 |
87 | 88 | 0.173255 | GCTTACGTACCTACCGCCAA | 59.827 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
88 | 89 | 0.964860 | TGCTTACGTACCTACCGCCA | 60.965 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
89 | 90 | 0.248784 | CTGCTTACGTACCTACCGCC | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
90 | 91 | 0.869028 | GCTGCTTACGTACCTACCGC | 60.869 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
91 | 92 | 0.248784 | GGCTGCTTACGTACCTACCG | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
92 | 93 | 0.248784 | CGGCTGCTTACGTACCTACC | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
93 | 94 | 0.453390 | ACGGCTGCTTACGTACCTAC | 59.547 | 55.000 | 0.00 | 0.00 | 42.15 | 3.18 |
94 | 95 | 1.176527 | AACGGCTGCTTACGTACCTA | 58.823 | 50.000 | 0.00 | 0.00 | 43.31 | 3.08 |
95 | 96 | 1.176527 | TAACGGCTGCTTACGTACCT | 58.823 | 50.000 | 0.00 | 0.00 | 43.31 | 3.08 |
96 | 97 | 1.655597 | GTTAACGGCTGCTTACGTACC | 59.344 | 52.381 | 0.00 | 0.00 | 43.31 | 3.34 |
97 | 98 | 1.655597 | GGTTAACGGCTGCTTACGTAC | 59.344 | 52.381 | 0.00 | 0.00 | 43.31 | 3.67 |
98 | 99 | 1.732077 | CGGTTAACGGCTGCTTACGTA | 60.732 | 52.381 | 0.00 | 0.00 | 43.31 | 3.57 |
99 | 100 | 1.010419 | CGGTTAACGGCTGCTTACGT | 61.010 | 55.000 | 0.00 | 0.00 | 46.48 | 3.57 |
100 | 101 | 1.705727 | CGGTTAACGGCTGCTTACG | 59.294 | 57.895 | 0.00 | 0.00 | 39.42 | 3.18 |
127 | 128 | 2.264794 | GGTAGGTGTGCCTGACGG | 59.735 | 66.667 | 0.00 | 0.00 | 46.47 | 4.79 |
128 | 129 | 2.126071 | CGGTAGGTGTGCCTGACG | 60.126 | 66.667 | 0.00 | 0.00 | 46.47 | 4.35 |
129 | 130 | 2.434359 | GCGGTAGGTGTGCCTGAC | 60.434 | 66.667 | 0.00 | 0.00 | 46.47 | 3.51 |
130 | 131 | 3.702048 | GGCGGTAGGTGTGCCTGA | 61.702 | 66.667 | 0.00 | 0.00 | 46.47 | 3.86 |
134 | 135 | 4.382320 | TTCCGGCGGTAGGTGTGC | 62.382 | 66.667 | 27.32 | 0.00 | 0.00 | 4.57 |
135 | 136 | 2.433664 | GTTCCGGCGGTAGGTGTG | 60.434 | 66.667 | 27.32 | 0.00 | 0.00 | 3.82 |
136 | 137 | 3.698820 | GGTTCCGGCGGTAGGTGT | 61.699 | 66.667 | 27.32 | 0.00 | 0.00 | 4.16 |
137 | 138 | 3.387947 | AGGTTCCGGCGGTAGGTG | 61.388 | 66.667 | 27.32 | 0.00 | 0.00 | 4.00 |
138 | 139 | 3.387947 | CAGGTTCCGGCGGTAGGT | 61.388 | 66.667 | 27.32 | 6.82 | 0.00 | 3.08 |
139 | 140 | 3.387947 | ACAGGTTCCGGCGGTAGG | 61.388 | 66.667 | 27.32 | 14.25 | 0.00 | 3.18 |
140 | 141 | 2.125673 | CACAGGTTCCGGCGGTAG | 60.126 | 66.667 | 27.32 | 14.21 | 0.00 | 3.18 |
141 | 142 | 3.697747 | CCACAGGTTCCGGCGGTA | 61.698 | 66.667 | 27.32 | 14.78 | 0.00 | 4.02 |
146 | 147 | 3.659089 | CTACCGCCACAGGTTCCGG | 62.659 | 68.421 | 0.00 | 0.00 | 43.00 | 5.14 |
147 | 148 | 2.125673 | CTACCGCCACAGGTTCCG | 60.126 | 66.667 | 0.00 | 0.00 | 43.00 | 4.30 |
148 | 149 | 1.079336 | GTCTACCGCCACAGGTTCC | 60.079 | 63.158 | 0.00 | 0.00 | 43.00 | 3.62 |
149 | 150 | 0.389948 | CAGTCTACCGCCACAGGTTC | 60.390 | 60.000 | 0.00 | 0.00 | 43.00 | 3.62 |
150 | 151 | 1.119574 | ACAGTCTACCGCCACAGGTT | 61.120 | 55.000 | 0.00 | 0.00 | 43.00 | 3.50 |
152 | 153 | 1.079819 | CACAGTCTACCGCCACAGG | 60.080 | 63.158 | 0.00 | 0.00 | 37.30 | 4.00 |
153 | 154 | 1.738099 | GCACAGTCTACCGCCACAG | 60.738 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
154 | 155 | 2.034048 | TTGCACAGTCTACCGCCACA | 62.034 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
155 | 156 | 0.673644 | ATTGCACAGTCTACCGCCAC | 60.674 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
156 | 157 | 0.391130 | GATTGCACAGTCTACCGCCA | 60.391 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
157 | 158 | 1.090052 | GGATTGCACAGTCTACCGCC | 61.090 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
158 | 159 | 0.108138 | AGGATTGCACAGTCTACCGC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
159 | 160 | 2.427453 | AGTAGGATTGCACAGTCTACCG | 59.573 | 50.000 | 10.30 | 0.00 | 32.95 | 4.02 |
160 | 161 | 3.195825 | ACAGTAGGATTGCACAGTCTACC | 59.804 | 47.826 | 10.30 | 0.00 | 32.95 | 3.18 |
161 | 162 | 4.425520 | GACAGTAGGATTGCACAGTCTAC | 58.574 | 47.826 | 0.00 | 0.00 | 30.87 | 2.59 |
162 | 163 | 3.447586 | GGACAGTAGGATTGCACAGTCTA | 59.552 | 47.826 | 0.00 | 0.00 | 33.23 | 2.59 |
163 | 164 | 2.234908 | GGACAGTAGGATTGCACAGTCT | 59.765 | 50.000 | 0.00 | 0.00 | 33.23 | 3.24 |
164 | 165 | 2.622436 | GGACAGTAGGATTGCACAGTC | 58.378 | 52.381 | 0.00 | 0.00 | 32.24 | 3.51 |
165 | 166 | 1.066858 | CGGACAGTAGGATTGCACAGT | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 3.55 |
166 | 167 | 1.204704 | TCGGACAGTAGGATTGCACAG | 59.795 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
167 | 168 | 1.204704 | CTCGGACAGTAGGATTGCACA | 59.795 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
168 | 169 | 1.471676 | CCTCGGACAGTAGGATTGCAC | 60.472 | 57.143 | 0.00 | 0.00 | 34.58 | 4.57 |
169 | 170 | 0.824109 | CCTCGGACAGTAGGATTGCA | 59.176 | 55.000 | 0.00 | 0.00 | 34.58 | 4.08 |
170 | 171 | 0.105039 | CCCTCGGACAGTAGGATTGC | 59.895 | 60.000 | 0.00 | 0.00 | 34.58 | 3.56 |
171 | 172 | 1.409427 | GACCCTCGGACAGTAGGATTG | 59.591 | 57.143 | 0.00 | 0.00 | 34.58 | 2.67 |
172 | 173 | 1.288335 | AGACCCTCGGACAGTAGGATT | 59.712 | 52.381 | 0.00 | 0.00 | 34.58 | 3.01 |
173 | 174 | 0.927767 | AGACCCTCGGACAGTAGGAT | 59.072 | 55.000 | 0.00 | 0.00 | 34.58 | 3.24 |
174 | 175 | 0.034380 | CAGACCCTCGGACAGTAGGA | 60.034 | 60.000 | 0.00 | 0.00 | 34.58 | 2.94 |
175 | 176 | 1.038130 | CCAGACCCTCGGACAGTAGG | 61.038 | 65.000 | 0.00 | 0.00 | 0.00 | 3.18 |
176 | 177 | 1.668101 | GCCAGACCCTCGGACAGTAG | 61.668 | 65.000 | 0.00 | 0.00 | 0.00 | 2.57 |
177 | 178 | 1.681327 | GCCAGACCCTCGGACAGTA | 60.681 | 63.158 | 0.00 | 0.00 | 0.00 | 2.74 |
178 | 179 | 2.997897 | GCCAGACCCTCGGACAGT | 60.998 | 66.667 | 0.00 | 0.00 | 0.00 | 3.55 |
179 | 180 | 4.135153 | CGCCAGACCCTCGGACAG | 62.135 | 72.222 | 0.00 | 0.00 | 0.00 | 3.51 |
180 | 181 | 2.561467 | TATCGCCAGACCCTCGGACA | 62.561 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
181 | 182 | 1.797211 | CTATCGCCAGACCCTCGGAC | 61.797 | 65.000 | 0.00 | 0.00 | 0.00 | 4.79 |
182 | 183 | 1.528542 | CTATCGCCAGACCCTCGGA | 60.529 | 63.158 | 0.00 | 0.00 | 0.00 | 4.55 |
183 | 184 | 0.536687 | TACTATCGCCAGACCCTCGG | 60.537 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
184 | 185 | 1.315690 | TTACTATCGCCAGACCCTCG | 58.684 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
185 | 186 | 3.492829 | CCTTTTACTATCGCCAGACCCTC | 60.493 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
186 | 187 | 2.434702 | CCTTTTACTATCGCCAGACCCT | 59.565 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
187 | 188 | 2.484947 | CCCTTTTACTATCGCCAGACCC | 60.485 | 54.545 | 0.00 | 0.00 | 0.00 | 4.46 |
188 | 189 | 2.169978 | ACCCTTTTACTATCGCCAGACC | 59.830 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
189 | 190 | 3.118884 | TGACCCTTTTACTATCGCCAGAC | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
190 | 191 | 3.101437 | TGACCCTTTTACTATCGCCAGA | 58.899 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
191 | 192 | 3.536956 | TGACCCTTTTACTATCGCCAG | 57.463 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
192 | 193 | 3.985019 | TTGACCCTTTTACTATCGCCA | 57.015 | 42.857 | 0.00 | 0.00 | 0.00 | 5.69 |
193 | 194 | 5.123936 | AGATTTGACCCTTTTACTATCGCC | 58.876 | 41.667 | 0.00 | 0.00 | 0.00 | 5.54 |
194 | 195 | 6.315393 | TCAAGATTTGACCCTTTTACTATCGC | 59.685 | 38.462 | 0.00 | 0.00 | 34.08 | 4.58 |
195 | 196 | 7.843490 | TCAAGATTTGACCCTTTTACTATCG | 57.157 | 36.000 | 0.00 | 0.00 | 34.08 | 2.92 |
198 | 199 | 9.362151 | ACATTTCAAGATTTGACCCTTTTACTA | 57.638 | 29.630 | 0.00 | 0.00 | 39.87 | 1.82 |
199 | 200 | 8.250143 | ACATTTCAAGATTTGACCCTTTTACT | 57.750 | 30.769 | 0.00 | 0.00 | 39.87 | 2.24 |
200 | 201 | 8.887036 | AACATTTCAAGATTTGACCCTTTTAC | 57.113 | 30.769 | 0.00 | 0.00 | 39.87 | 2.01 |
201 | 202 | 9.898152 | AAAACATTTCAAGATTTGACCCTTTTA | 57.102 | 25.926 | 0.00 | 0.00 | 39.87 | 1.52 |
202 | 203 | 8.806429 | AAAACATTTCAAGATTTGACCCTTTT | 57.194 | 26.923 | 0.00 | 0.00 | 39.87 | 2.27 |
203 | 204 | 8.046107 | TGAAAACATTTCAAGATTTGACCCTTT | 58.954 | 29.630 | 3.18 | 0.00 | 39.87 | 3.11 |
204 | 205 | 7.563906 | TGAAAACATTTCAAGATTTGACCCTT | 58.436 | 30.769 | 3.18 | 0.00 | 39.87 | 3.95 |
205 | 206 | 7.123355 | TGAAAACATTTCAAGATTTGACCCT | 57.877 | 32.000 | 3.18 | 0.00 | 39.87 | 4.34 |
206 | 207 | 7.784633 | TTGAAAACATTTCAAGATTTGACCC | 57.215 | 32.000 | 12.80 | 0.00 | 39.87 | 4.46 |
207 | 208 | 8.882736 | AGTTTGAAAACATTTCAAGATTTGACC | 58.117 | 29.630 | 15.41 | 2.53 | 41.30 | 4.02 |
208 | 209 | 9.693157 | CAGTTTGAAAACATTTCAAGATTTGAC | 57.307 | 29.630 | 15.41 | 11.07 | 41.30 | 3.18 |
209 | 210 | 9.650539 | TCAGTTTGAAAACATTTCAAGATTTGA | 57.349 | 25.926 | 15.41 | 14.15 | 41.30 | 2.69 |
226 | 227 | 7.912056 | ATTCGAGATCTGATTTCAGTTTGAA | 57.088 | 32.000 | 0.00 | 9.73 | 44.12 | 2.69 |
227 | 228 | 7.912056 | AATTCGAGATCTGATTTCAGTTTGA | 57.088 | 32.000 | 0.00 | 2.57 | 44.12 | 2.69 |
228 | 229 | 8.019669 | ACAAATTCGAGATCTGATTTCAGTTTG | 58.980 | 33.333 | 18.03 | 18.03 | 44.12 | 2.93 |
229 | 230 | 8.103948 | ACAAATTCGAGATCTGATTTCAGTTT | 57.896 | 30.769 | 0.00 | 3.76 | 44.12 | 2.66 |
230 | 231 | 7.678947 | ACAAATTCGAGATCTGATTTCAGTT | 57.321 | 32.000 | 0.00 | 0.00 | 44.12 | 3.16 |
231 | 232 | 7.678947 | AACAAATTCGAGATCTGATTTCAGT | 57.321 | 32.000 | 0.00 | 0.00 | 44.12 | 3.41 |
232 | 233 | 8.232513 | TCAAACAAATTCGAGATCTGATTTCAG | 58.767 | 33.333 | 0.00 | 0.97 | 45.08 | 3.02 |
233 | 234 | 8.017373 | GTCAAACAAATTCGAGATCTGATTTCA | 58.983 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
234 | 235 | 8.017373 | TGTCAAACAAATTCGAGATCTGATTTC | 58.983 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
235 | 236 | 7.874940 | TGTCAAACAAATTCGAGATCTGATTT | 58.125 | 30.769 | 0.00 | 1.24 | 0.00 | 2.17 |
236 | 237 | 7.439157 | TGTCAAACAAATTCGAGATCTGATT | 57.561 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
237 | 238 | 7.439157 | TTGTCAAACAAATTCGAGATCTGAT | 57.561 | 32.000 | 0.00 | 0.00 | 34.76 | 2.90 |
238 | 239 | 6.859420 | TTGTCAAACAAATTCGAGATCTGA | 57.141 | 33.333 | 0.00 | 0.00 | 34.76 | 3.27 |
239 | 240 | 7.113965 | CCTTTTGTCAAACAAATTCGAGATCTG | 59.886 | 37.037 | 0.00 | 0.00 | 46.17 | 2.90 |
240 | 241 | 7.141363 | CCTTTTGTCAAACAAATTCGAGATCT | 58.859 | 34.615 | 6.12 | 0.00 | 46.17 | 2.75 |
241 | 242 | 6.363357 | CCCTTTTGTCAAACAAATTCGAGATC | 59.637 | 38.462 | 6.12 | 0.00 | 46.17 | 2.75 |
242 | 243 | 6.183360 | ACCCTTTTGTCAAACAAATTCGAGAT | 60.183 | 34.615 | 6.12 | 0.00 | 46.17 | 2.75 |
243 | 244 | 5.126384 | ACCCTTTTGTCAAACAAATTCGAGA | 59.874 | 36.000 | 6.12 | 0.00 | 46.17 | 4.04 |
244 | 245 | 5.348164 | ACCCTTTTGTCAAACAAATTCGAG | 58.652 | 37.500 | 6.12 | 1.60 | 46.17 | 4.04 |
245 | 246 | 5.105716 | TGACCCTTTTGTCAAACAAATTCGA | 60.106 | 36.000 | 6.12 | 0.00 | 46.17 | 3.71 |
246 | 247 | 5.105752 | TGACCCTTTTGTCAAACAAATTCG | 58.894 | 37.500 | 6.12 | 0.51 | 46.17 | 3.34 |
256 | 257 | 2.164624 | CCGTGTTTTGACCCTTTTGTCA | 59.835 | 45.455 | 0.00 | 0.00 | 43.26 | 3.58 |
257 | 258 | 2.424246 | TCCGTGTTTTGACCCTTTTGTC | 59.576 | 45.455 | 0.00 | 0.00 | 35.77 | 3.18 |
258 | 259 | 2.448453 | TCCGTGTTTTGACCCTTTTGT | 58.552 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
259 | 260 | 3.512033 | TTCCGTGTTTTGACCCTTTTG | 57.488 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
260 | 261 | 4.746535 | AATTCCGTGTTTTGACCCTTTT | 57.253 | 36.364 | 0.00 | 0.00 | 0.00 | 2.27 |
261 | 262 | 4.438148 | CAAATTCCGTGTTTTGACCCTTT | 58.562 | 39.130 | 0.00 | 0.00 | 35.34 | 3.11 |
262 | 263 | 3.181470 | CCAAATTCCGTGTTTTGACCCTT | 60.181 | 43.478 | 0.00 | 0.00 | 35.34 | 3.95 |
263 | 264 | 2.364002 | CCAAATTCCGTGTTTTGACCCT | 59.636 | 45.455 | 0.00 | 0.00 | 35.34 | 4.34 |
264 | 265 | 2.749776 | CCAAATTCCGTGTTTTGACCC | 58.250 | 47.619 | 0.00 | 0.00 | 35.34 | 4.46 |
265 | 266 | 2.131972 | GCCAAATTCCGTGTTTTGACC | 58.868 | 47.619 | 0.00 | 0.00 | 35.34 | 4.02 |
266 | 267 | 2.131972 | GGCCAAATTCCGTGTTTTGAC | 58.868 | 47.619 | 0.00 | 0.00 | 35.34 | 3.18 |
267 | 268 | 2.035321 | GAGGCCAAATTCCGTGTTTTGA | 59.965 | 45.455 | 5.01 | 0.00 | 35.34 | 2.69 |
268 | 269 | 2.035832 | AGAGGCCAAATTCCGTGTTTTG | 59.964 | 45.455 | 5.01 | 0.00 | 33.58 | 2.44 |
269 | 270 | 2.316108 | AGAGGCCAAATTCCGTGTTTT | 58.684 | 42.857 | 5.01 | 0.00 | 0.00 | 2.43 |
270 | 271 | 1.995376 | AGAGGCCAAATTCCGTGTTT | 58.005 | 45.000 | 5.01 | 0.00 | 0.00 | 2.83 |
271 | 272 | 1.886542 | GAAGAGGCCAAATTCCGTGTT | 59.113 | 47.619 | 5.01 | 0.00 | 0.00 | 3.32 |
272 | 273 | 1.534729 | GAAGAGGCCAAATTCCGTGT | 58.465 | 50.000 | 5.01 | 0.00 | 0.00 | 4.49 |
273 | 274 | 0.811281 | GGAAGAGGCCAAATTCCGTG | 59.189 | 55.000 | 15.40 | 0.00 | 33.67 | 4.94 |
274 | 275 | 3.266240 | GGAAGAGGCCAAATTCCGT | 57.734 | 52.632 | 15.40 | 0.00 | 33.67 | 4.69 |
276 | 277 | 2.493547 | CCGGAAGAGGCCAAATTCC | 58.506 | 57.895 | 18.86 | 18.86 | 39.31 | 3.01 |
285 | 286 | 1.153349 | GCCTAACAGCCGGAAGAGG | 60.153 | 63.158 | 5.05 | 4.65 | 0.00 | 3.69 |
286 | 287 | 0.179000 | ATGCCTAACAGCCGGAAGAG | 59.821 | 55.000 | 5.05 | 0.00 | 0.00 | 2.85 |
348 | 737 | 3.312421 | AGTTGTGACCAAACATCTGTTCG | 59.688 | 43.478 | 0.00 | 0.00 | 37.25 | 3.95 |
350 | 739 | 4.096382 | GTGAGTTGTGACCAAACATCTGTT | 59.904 | 41.667 | 0.00 | 0.00 | 40.50 | 3.16 |
353 | 742 | 3.884895 | TGTGAGTTGTGACCAAACATCT | 58.115 | 40.909 | 0.00 | 0.00 | 33.74 | 2.90 |
358 | 747 | 4.873827 | GTCTACTTGTGAGTTGTGACCAAA | 59.126 | 41.667 | 0.00 | 0.00 | 37.33 | 3.28 |
369 | 758 | 6.306837 | CGCTTTCTCTTTAGTCTACTTGTGAG | 59.693 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
371 | 760 | 6.088350 | GTCGCTTTCTCTTTAGTCTACTTGTG | 59.912 | 42.308 | 0.00 | 0.00 | 0.00 | 3.33 |
373 | 762 | 5.573669 | GGTCGCTTTCTCTTTAGTCTACTTG | 59.426 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
374 | 763 | 5.619533 | CGGTCGCTTTCTCTTTAGTCTACTT | 60.620 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
375 | 764 | 4.142643 | CGGTCGCTTTCTCTTTAGTCTACT | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
376 | 765 | 4.097012 | CGGTCGCTTTCTCTTTAGTCTAC | 58.903 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
377 | 766 | 3.755378 | ACGGTCGCTTTCTCTTTAGTCTA | 59.245 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
378 | 767 | 2.557490 | ACGGTCGCTTTCTCTTTAGTCT | 59.443 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
379 | 768 | 2.662156 | CACGGTCGCTTTCTCTTTAGTC | 59.338 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
380 | 769 | 2.609737 | CCACGGTCGCTTTCTCTTTAGT | 60.610 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
381 | 770 | 1.993370 | CCACGGTCGCTTTCTCTTTAG | 59.007 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
382 | 771 | 1.938016 | GCCACGGTCGCTTTCTCTTTA | 60.938 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
383 | 772 | 1.228657 | GCCACGGTCGCTTTCTCTTT | 61.229 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
384 | 773 | 1.668151 | GCCACGGTCGCTTTCTCTT | 60.668 | 57.895 | 0.00 | 0.00 | 0.00 | 2.85 |
385 | 774 | 2.048127 | GCCACGGTCGCTTTCTCT | 60.048 | 61.111 | 0.00 | 0.00 | 0.00 | 3.10 |
386 | 775 | 1.627550 | GAAGCCACGGTCGCTTTCTC | 61.628 | 60.000 | 14.08 | 0.00 | 46.37 | 2.87 |
387 | 776 | 1.668151 | GAAGCCACGGTCGCTTTCT | 60.668 | 57.895 | 14.08 | 0.00 | 46.37 | 2.52 |
388 | 777 | 1.503818 | TTGAAGCCACGGTCGCTTTC | 61.504 | 55.000 | 14.08 | 8.30 | 46.37 | 2.62 |
389 | 778 | 1.507141 | CTTGAAGCCACGGTCGCTTT | 61.507 | 55.000 | 14.08 | 0.00 | 46.37 | 3.51 |
391 | 780 | 1.812686 | TACTTGAAGCCACGGTCGCT | 61.813 | 55.000 | 0.00 | 0.00 | 38.53 | 4.93 |
392 | 781 | 0.947180 | TTACTTGAAGCCACGGTCGC | 60.947 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
393 | 782 | 1.504359 | TTTACTTGAAGCCACGGTCG | 58.496 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
394 | 783 | 3.335579 | AGATTTACTTGAAGCCACGGTC | 58.664 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
453 | 842 | 6.805016 | TCAGAAAGAAAGAGGAGCATATCT | 57.195 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
491 | 2487 | 1.746615 | AGAACAAGCGCCGCATCAT | 60.747 | 52.632 | 13.36 | 0.00 | 0.00 | 2.45 |
504 | 2500 | 4.694760 | ATCATTCATCGATCCCAGAACA | 57.305 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
509 | 2505 | 2.549329 | CGCAAATCATTCATCGATCCCA | 59.451 | 45.455 | 0.00 | 0.00 | 0.00 | 4.37 |
518 | 2514 | 0.171679 | CAGCCAGCGCAAATCATTCA | 59.828 | 50.000 | 11.47 | 0.00 | 37.52 | 2.57 |
550 | 2546 | 2.244695 | TGTGTTGATCGGGTGACTAGT | 58.755 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
574 | 2570 | 2.960129 | GTCGCGCGGATCGGAATT | 60.960 | 61.111 | 31.69 | 0.00 | 38.94 | 2.17 |
577 | 2573 | 4.201679 | AATGTCGCGCGGATCGGA | 62.202 | 61.111 | 31.69 | 6.17 | 38.94 | 4.55 |
670 | 2677 | 3.353557 | TGCGACTAGTGAGTTGGAGTAT | 58.646 | 45.455 | 0.00 | 0.00 | 37.53 | 2.12 |
743 | 2750 | 3.197766 | TGTAGGAGTAGGACCAGCAAATG | 59.802 | 47.826 | 0.00 | 0.00 | 0.00 | 2.32 |
746 | 2753 | 2.176889 | GTGTAGGAGTAGGACCAGCAA | 58.823 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
833 | 2840 | 1.682344 | GAGTTGGGGAATGGGGTGC | 60.682 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
856 | 2866 | 4.271687 | CCGCGTTTTTATAGCTGATGAAC | 58.728 | 43.478 | 4.92 | 0.00 | 0.00 | 3.18 |
878 | 2888 | 2.034048 | GAGGGAATCAGGACGAGGCC | 62.034 | 65.000 | 0.00 | 0.00 | 0.00 | 5.19 |
910 | 2920 | 1.373497 | GAGGCGAGTGAGTGTGTGG | 60.373 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
952 | 2962 | 1.020861 | CAGATGCGGCTGTGCTACAA | 61.021 | 55.000 | 0.00 | 0.00 | 35.36 | 2.41 |
1371 | 3429 | 7.093354 | TGTAGCACATGAAAAGAAAAACACAA | 58.907 | 30.769 | 0.00 | 0.00 | 0.00 | 3.33 |
1443 | 3501 | 5.059833 | GGGACCAATACAGAGAACATGATC | 58.940 | 45.833 | 0.00 | 0.00 | 0.00 | 2.92 |
1576 | 3672 | 5.106712 | TGGTTAACTTCGTGCAGAAATGATC | 60.107 | 40.000 | 5.42 | 0.00 | 38.57 | 2.92 |
1596 | 3692 | 0.596082 | CGCCCGATGAAAAACTGGTT | 59.404 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1659 | 3755 | 3.831323 | TGGGATGCAGAAAAACAGAGAA | 58.169 | 40.909 | 0.00 | 0.00 | 0.00 | 2.87 |
1660 | 3756 | 3.507162 | TGGGATGCAGAAAAACAGAGA | 57.493 | 42.857 | 0.00 | 0.00 | 0.00 | 3.10 |
1661 | 3757 | 3.318839 | TGTTGGGATGCAGAAAAACAGAG | 59.681 | 43.478 | 0.00 | 0.00 | 0.00 | 3.35 |
1662 | 3758 | 3.295093 | TGTTGGGATGCAGAAAAACAGA | 58.705 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
1663 | 3759 | 3.318839 | TCTGTTGGGATGCAGAAAAACAG | 59.681 | 43.478 | 20.64 | 20.64 | 43.62 | 3.16 |
1711 | 3808 | 4.101790 | AAGTTGCCGCGGCGATTG | 62.102 | 61.111 | 40.71 | 8.56 | 45.51 | 2.67 |
1995 | 4094 | 1.276622 | GGGCTCCCACTTCTACTTCA | 58.723 | 55.000 | 0.00 | 0.00 | 35.81 | 3.02 |
2131 | 4230 | 3.628646 | GACCATCAACAGCCCCGCT | 62.629 | 63.158 | 0.00 | 0.00 | 40.77 | 5.52 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.