Multiple sequence alignment - TraesCS3B01G283900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G283900 chr3B 100.000 6417 0 0 1 6417 454870543 454876959 0.000000e+00 11851.0
1 TraesCS3B01G283900 chr3B 79.545 132 16 10 3388 3509 598999385 598999515 4.120000e-12 84.2
2 TraesCS3B01G283900 chr3A 92.942 2196 95 22 4254 6414 472904350 472906520 0.000000e+00 3142.0
3 TraesCS3B01G283900 chr3A 88.603 2141 117 53 1 2098 472899382 472901438 0.000000e+00 2484.0
4 TraesCS3B01G283900 chr3A 88.660 1358 109 24 2870 4210 472902558 472903887 0.000000e+00 1613.0
5 TraesCS3B01G283900 chr3A 87.651 413 22 16 2469 2874 472902014 472902404 2.730000e-123 453.0
6 TraesCS3B01G283900 chr3A 78.310 355 25 20 2129 2472 472901439 472901752 1.420000e-41 182.0
7 TraesCS3B01G283900 chr3A 97.436 39 1 0 3387 3425 173934539 173934577 4.150000e-07 67.6
8 TraesCS3B01G283900 chr3D 88.495 2425 130 60 519 2874 354268620 354270964 0.000000e+00 2795.0
9 TraesCS3B01G283900 chr3D 93.733 1484 62 17 4254 5728 354272927 354274388 0.000000e+00 2196.0
10 TraesCS3B01G283900 chr3D 88.725 1357 107 24 2870 4210 354271119 354272445 0.000000e+00 1616.0
11 TraesCS3B01G283900 chr3D 89.636 714 43 17 5729 6414 354274427 354275137 0.000000e+00 880.0
12 TraesCS3B01G283900 chr3D 95.301 532 14 5 1 523 354266352 354266881 0.000000e+00 833.0
13 TraesCS3B01G283900 chr3D 79.699 133 16 10 3387 3509 455722774 455722905 1.150000e-12 86.1
14 TraesCS3B01G283900 chr3D 92.593 54 3 1 3158 3210 343485190 343485243 6.900000e-10 76.8
15 TraesCS3B01G283900 chr5B 86.735 98 13 0 1568 1665 680768961 680769058 6.800000e-20 110.0
16 TraesCS3B01G283900 chr5B 81.429 140 16 8 3392 3524 609936968 609937104 8.800000e-19 106.0
17 TraesCS3B01G283900 chr2A 74.786 234 45 13 2986 3208 652576827 652576597 6.850000e-15 93.5
18 TraesCS3B01G283900 chr7A 82.828 99 14 2 3732 3827 666977759 666977857 1.150000e-12 86.1
19 TraesCS3B01G283900 chr7A 78.947 114 22 2 3093 3205 518526776 518526888 6.900000e-10 76.8
20 TraesCS3B01G283900 chr7A 92.157 51 2 1 3387 3437 89070707 89070659 3.210000e-08 71.3
21 TraesCS3B01G283900 chr6D 78.740 127 25 2 3731 3856 409164139 409164264 4.120000e-12 84.2
22 TraesCS3B01G283900 chr4B 92.727 55 4 0 3387 3441 654133189 654133135 5.330000e-11 80.5
23 TraesCS3B01G283900 chr2D 88.136 59 7 0 3153 3211 575323464 575323522 3.210000e-08 71.3
24 TraesCS3B01G283900 chr2D 97.500 40 1 0 3387 3426 552572997 552573036 1.150000e-07 69.4
25 TraesCS3B01G283900 chr2B 86.441 59 8 0 3153 3211 691353055 691353113 1.490000e-06 65.8
26 TraesCS3B01G283900 chr5A 94.872 39 2 0 3100 3138 480295517 480295555 1.930000e-05 62.1
27 TraesCS3B01G283900 chr7D 85.246 61 6 3 3169 3226 101777056 101776996 6.950000e-05 60.2
28 TraesCS3B01G283900 chr7D 90.909 44 4 0 3164 3207 630831038 630830995 6.950000e-05 60.2
29 TraesCS3B01G283900 chr7D 96.970 33 1 0 3100 3132 450255827 450255859 8.990000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G283900 chr3B 454870543 454876959 6416 False 11851.0 11851 100.0000 1 6417 1 chr3B.!!$F1 6416
1 TraesCS3B01G283900 chr3A 472899382 472906520 7138 False 1574.8 3142 87.2332 1 6414 5 chr3A.!!$F2 6413
2 TraesCS3B01G283900 chr3D 354266352 354275137 8785 False 1664.0 2795 91.1780 1 6414 5 chr3D.!!$F3 6413

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 466 0.811616 GCTTGGCCACTAGATCACCG 60.812 60.0 3.88 0.00 0.00 4.94 F
1493 3277 0.037046 ACACTCACAGCGCATCATCA 60.037 50.0 11.47 0.00 0.00 3.07 F
1794 3608 0.035152 TGCCAACTGCCTGATTCGAT 60.035 50.0 0.00 0.00 40.16 3.59 F
2360 4219 0.037790 GAGTGAGTCTGTGGGTGAGC 60.038 60.0 0.00 0.00 0.00 4.26 F
2686 4812 0.407528 TTTCCACCCCAGCTGCAATA 59.592 50.0 8.66 0.00 0.00 1.90 F
4011 6314 0.112995 ACCACCTCACCATGCAACAT 59.887 50.0 0.00 0.00 0.00 2.71 F
4503 7253 0.681243 ATCCTTCTTTTCCAGCCGGC 60.681 55.0 21.89 21.89 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1500 3284 0.030638 TGCCGAACTCTTTTTGCTGC 59.969 50.000 0.0 0.0 0.00 5.25 R
2556 4680 0.179059 TGACACTGATGCAACACGGT 60.179 50.000 0.0 0.0 0.00 4.83 R
2644 4770 2.363306 TCAAGTGGGTGTTGCAAGAT 57.637 45.000 0.0 0.0 0.00 2.40 R
3897 6198 0.168128 GATACCCTGCACGTTGTTGC 59.832 55.000 0.0 0.0 43.31 4.17 R
4464 7214 0.250553 CACCGTCCCCTGCTACAAAA 60.251 55.000 0.0 0.0 0.00 2.44 R
4884 7635 1.007038 GTTACCGTCACGACCTGCA 60.007 57.895 0.0 0.0 0.00 4.41 R
6337 9175 1.056660 TTCCCTCCGGCATTATCTCC 58.943 55.000 0.0 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.096335 TCATGTCATGATGCTGCGTTTC 59.904 45.455 11.62 0.00 33.59 2.78
158 160 1.843368 TCTTAGTGTACCGGGTCAGG 58.157 55.000 6.32 0.00 37.30 3.86
160 162 1.259840 TTAGTGTACCGGGTCAGGCC 61.260 60.000 6.32 0.00 33.69 5.19
217 227 3.827008 TCTTGGCAGTAGACATCATCC 57.173 47.619 0.00 0.00 28.61 3.51
218 228 2.435805 TCTTGGCAGTAGACATCATCCC 59.564 50.000 0.00 0.00 28.61 3.85
286 298 1.144969 CGTCTTTTCGCACCAGCTTA 58.855 50.000 0.00 0.00 39.10 3.09
289 301 3.725010 CGTCTTTTCGCACCAGCTTATTC 60.725 47.826 0.00 0.00 39.10 1.75
368 386 1.504900 ACGAAGTCATAGCGCGACA 59.495 52.632 12.10 0.00 29.74 4.35
448 466 0.811616 GCTTGGCCACTAGATCACCG 60.812 60.000 3.88 0.00 0.00 4.94
461 479 1.209504 GATCACCGGGAAGATGTGGAA 59.790 52.381 6.32 0.00 0.00 3.53
465 483 1.633432 ACCGGGAAGATGTGGAATGAA 59.367 47.619 6.32 0.00 0.00 2.57
672 2451 2.186903 GACGCCCATGGTCGATGT 59.813 61.111 23.95 6.73 0.00 3.06
1380 3164 3.790437 CTGCCGAGGCCACTGGAT 61.790 66.667 12.05 0.00 41.09 3.41
1381 3165 4.100084 TGCCGAGGCCACTGGATG 62.100 66.667 12.05 0.00 41.09 3.51
1418 3202 2.494530 GCCACGTTTTCTTGCCCCA 61.495 57.895 0.00 0.00 0.00 4.96
1432 3216 2.738521 CCCACGACGTGCTTCTGG 60.739 66.667 22.46 13.58 31.34 3.86
1433 3217 3.414700 CCACGACGTGCTTCTGGC 61.415 66.667 22.46 0.00 42.22 4.85
1434 3218 3.767230 CACGACGTGCTTCTGGCG 61.767 66.667 16.06 0.00 45.43 5.69
1436 3220 2.126618 CGACGTGCTTCTGGCGTA 60.127 61.111 0.00 0.00 45.43 4.42
1437 3221 2.152699 CGACGTGCTTCTGGCGTAG 61.153 63.158 0.00 0.00 45.43 3.51
1439 3223 0.388134 GACGTGCTTCTGGCGTAGAA 60.388 55.000 0.00 4.58 45.43 2.10
1440 3224 0.666577 ACGTGCTTCTGGCGTAGAAC 60.667 55.000 0.00 0.00 45.43 3.01
1441 3225 1.352156 CGTGCTTCTGGCGTAGAACC 61.352 60.000 0.93 0.00 45.43 3.62
1442 3226 0.320421 GTGCTTCTGGCGTAGAACCA 60.320 55.000 0.93 0.00 45.43 3.67
1443 3227 0.613260 TGCTTCTGGCGTAGAACCAT 59.387 50.000 0.93 0.00 45.43 3.55
1444 3228 1.291132 GCTTCTGGCGTAGAACCATC 58.709 55.000 0.93 0.00 40.43 3.51
1491 3275 2.385013 TTACACTCACAGCGCATCAT 57.615 45.000 11.47 0.00 0.00 2.45
1493 3277 0.037046 ACACTCACAGCGCATCATCA 60.037 50.000 11.47 0.00 0.00 3.07
1494 3278 1.081094 CACTCACAGCGCATCATCAA 58.919 50.000 11.47 0.00 0.00 2.57
1495 3279 1.669265 CACTCACAGCGCATCATCAAT 59.331 47.619 11.47 0.00 0.00 2.57
1496 3280 1.938577 ACTCACAGCGCATCATCAATC 59.061 47.619 11.47 0.00 0.00 2.67
1497 3281 1.937899 CTCACAGCGCATCATCAATCA 59.062 47.619 11.47 0.00 0.00 2.57
1498 3282 2.353579 CTCACAGCGCATCATCAATCAA 59.646 45.455 11.47 0.00 0.00 2.57
1499 3283 2.748532 TCACAGCGCATCATCAATCAAA 59.251 40.909 11.47 0.00 0.00 2.69
1500 3284 3.105937 CACAGCGCATCATCAATCAAAG 58.894 45.455 11.47 0.00 0.00 2.77
1501 3285 2.117137 CAGCGCATCATCAATCAAAGC 58.883 47.619 11.47 0.00 0.00 3.51
1502 3286 1.746787 AGCGCATCATCAATCAAAGCA 59.253 42.857 11.47 0.00 0.00 3.91
1503 3287 2.117137 GCGCATCATCAATCAAAGCAG 58.883 47.619 0.30 0.00 0.00 4.24
1504 3288 2.117137 CGCATCATCAATCAAAGCAGC 58.883 47.619 0.00 0.00 0.00 5.25
1505 3289 2.478879 CGCATCATCAATCAAAGCAGCA 60.479 45.455 0.00 0.00 0.00 4.41
1514 3298 5.663456 TCAATCAAAGCAGCAAAAAGAGTT 58.337 33.333 0.00 0.00 0.00 3.01
1523 3317 2.887152 AGCAAAAAGAGTTCGGCATTCT 59.113 40.909 0.00 0.00 0.00 2.40
1529 3323 0.737715 GAGTTCGGCATTCTCGCACT 60.738 55.000 0.00 0.00 36.88 4.40
1532 3326 0.320334 TTCGGCATTCTCGCACTGAA 60.320 50.000 0.00 0.00 0.00 3.02
1533 3327 1.014044 TCGGCATTCTCGCACTGAAC 61.014 55.000 0.00 0.00 0.00 3.18
1539 3333 2.218953 TTCTCGCACTGAACGAAACT 57.781 45.000 0.00 0.00 39.39 2.66
1543 3337 1.610038 TCGCACTGAACGAAACTCCTA 59.390 47.619 0.00 0.00 36.44 2.94
1544 3338 2.230508 TCGCACTGAACGAAACTCCTAT 59.769 45.455 0.00 0.00 36.44 2.57
1545 3339 2.345641 CGCACTGAACGAAACTCCTATG 59.654 50.000 0.00 0.00 0.00 2.23
1547 3341 3.746492 GCACTGAACGAAACTCCTATGTT 59.254 43.478 0.00 0.00 0.00 2.71
1548 3342 4.143094 GCACTGAACGAAACTCCTATGTTC 60.143 45.833 0.00 0.00 39.40 3.18
1549 3343 4.988540 CACTGAACGAAACTCCTATGTTCA 59.011 41.667 6.02 6.02 44.61 3.18
1793 3607 0.674581 CTGCCAACTGCCTGATTCGA 60.675 55.000 0.00 0.00 40.16 3.71
1794 3608 0.035152 TGCCAACTGCCTGATTCGAT 60.035 50.000 0.00 0.00 40.16 3.59
1797 3616 2.481952 GCCAACTGCCTGATTCGATATC 59.518 50.000 0.00 0.00 0.00 1.63
1800 3619 4.758674 CCAACTGCCTGATTCGATATCATT 59.241 41.667 3.12 1.34 0.00 2.57
1802 3621 6.427853 CCAACTGCCTGATTCGATATCATTAA 59.572 38.462 3.12 0.00 0.00 1.40
1803 3622 7.041167 CCAACTGCCTGATTCGATATCATTAAA 60.041 37.037 3.12 0.00 0.00 1.52
1812 3631 8.869897 TGATTCGATATCATTAAATAGCGTTCC 58.130 33.333 3.12 0.00 40.77 3.62
1814 3633 8.771920 TTCGATATCATTAAATAGCGTTCCAT 57.228 30.769 3.12 0.00 40.77 3.41
1824 3643 2.202824 CGTTCCATTCGGCCGCTA 60.203 61.111 23.51 11.78 0.00 4.26
1827 3646 0.806241 GTTCCATTCGGCCGCTAAAA 59.194 50.000 23.51 10.36 0.00 1.52
1828 3647 1.091537 TTCCATTCGGCCGCTAAAAG 58.908 50.000 23.51 6.81 0.00 2.27
1829 3648 0.250793 TCCATTCGGCCGCTAAAAGA 59.749 50.000 23.51 9.36 0.00 2.52
1830 3649 1.134220 TCCATTCGGCCGCTAAAAGAT 60.134 47.619 23.51 2.31 0.00 2.40
1833 3652 2.911819 TTCGGCCGCTAAAAGATTTG 57.088 45.000 23.51 0.00 0.00 2.32
1834 3653 1.091537 TCGGCCGCTAAAAGATTTGG 58.908 50.000 23.51 0.00 0.00 3.28
1835 3654 0.525455 CGGCCGCTAAAAGATTTGGC 60.525 55.000 14.67 1.58 41.72 4.52
1836 3655 0.525455 GGCCGCTAAAAGATTTGGCG 60.525 55.000 21.56 21.56 43.36 5.69
1837 3656 1.139816 GCCGCTAAAAGATTTGGCGC 61.140 55.000 22.64 15.98 39.82 6.53
1842 3661 2.854805 GCTAAAAGATTTGGCGCCGATC 60.855 50.000 26.54 26.54 0.00 3.69
1845 3664 2.869503 AAGATTTGGCGCCGATCGGT 62.870 55.000 33.33 19.81 38.94 4.69
1860 3693 4.819761 GGTCATGCGCGGCTCTGA 62.820 66.667 8.83 5.39 0.00 3.27
1862 3695 2.176273 GTCATGCGCGGCTCTGATT 61.176 57.895 8.83 0.00 0.00 2.57
1916 3754 2.981350 TTGCGCCGTCCTTTTCCC 60.981 61.111 4.18 0.00 0.00 3.97
1919 3757 4.382320 CGCCGTCCTTTTCCCGGA 62.382 66.667 0.73 0.00 44.41 5.14
2057 3902 7.114953 GCCTCTTTTCGATAAAGAAACAAAAGG 59.885 37.037 17.51 14.84 39.53 3.11
2091 3936 2.911484 AGATCCGCTTTTGTCTCATCC 58.089 47.619 0.00 0.00 0.00 3.51
2102 3947 0.597118 GTCTCATCCAGCAGCGCTAG 60.597 60.000 10.99 5.98 36.40 3.42
2104 3949 0.179089 CTCATCCAGCAGCGCTAGTT 60.179 55.000 10.99 0.00 36.40 2.24
2105 3950 0.460811 TCATCCAGCAGCGCTAGTTG 60.461 55.000 10.99 12.88 36.40 3.16
2106 3951 0.742281 CATCCAGCAGCGCTAGTTGT 60.742 55.000 10.99 0.00 36.40 3.32
2107 3952 0.824109 ATCCAGCAGCGCTAGTTGTA 59.176 50.000 10.99 0.10 36.40 2.41
2108 3953 0.108804 TCCAGCAGCGCTAGTTGTAC 60.109 55.000 10.99 0.00 36.40 2.90
2121 3966 1.067974 AGTTGTACTGTACTGTGCGCA 59.932 47.619 17.98 5.66 0.00 6.09
2131 3976 4.075854 TGTGCGCATCGTGGCCTA 62.076 61.111 15.91 0.00 0.00 3.93
2139 3984 2.349817 CGCATCGTGGCCTATTGAATTC 60.350 50.000 3.32 0.00 0.00 2.17
2140 3985 2.030805 GCATCGTGGCCTATTGAATTCC 60.031 50.000 3.32 0.00 0.00 3.01
2160 4005 0.467290 CCCAATGGTAATGGACGGGG 60.467 60.000 0.00 0.00 40.56 5.73
2171 4016 3.832615 ATGGACGGGGTGATTTAGTAC 57.167 47.619 0.00 0.00 0.00 2.73
2249 4094 0.107410 AAACCTTGACGGAGCACACA 60.107 50.000 0.00 0.00 36.31 3.72
2259 4104 0.460284 GGAGCACACATGGTAGACCG 60.460 60.000 0.00 0.00 36.44 4.79
2260 4105 0.460284 GAGCACACATGGTAGACCGG 60.460 60.000 0.00 0.00 36.44 5.28
2261 4106 2.106683 GCACACATGGTAGACCGGC 61.107 63.158 0.00 0.00 39.43 6.13
2262 4107 1.449601 CACACATGGTAGACCGGCC 60.450 63.158 0.00 0.00 39.43 6.13
2272 4117 2.898920 TAGACCGGCCGTCAGGTAGG 62.899 65.000 26.12 8.44 44.66 3.18
2310 4165 3.620488 TCTTTCAACCTTTGCAGTGACT 58.380 40.909 0.00 0.00 0.00 3.41
2344 4203 0.865769 GTTTGTCAATGGCGTCGAGT 59.134 50.000 0.00 0.00 0.00 4.18
2357 4216 0.039074 GTCGAGTGAGTCTGTGGGTG 60.039 60.000 0.00 0.00 0.00 4.61
2358 4217 0.179001 TCGAGTGAGTCTGTGGGTGA 60.179 55.000 0.00 0.00 0.00 4.02
2359 4218 0.242286 CGAGTGAGTCTGTGGGTGAG 59.758 60.000 0.00 0.00 0.00 3.51
2360 4219 0.037790 GAGTGAGTCTGTGGGTGAGC 60.038 60.000 0.00 0.00 0.00 4.26
2362 4221 2.262915 GAGTCTGTGGGTGAGCGG 59.737 66.667 0.00 0.00 0.00 5.52
2364 4223 3.626924 GTCTGTGGGTGAGCGGGT 61.627 66.667 0.00 0.00 0.00 5.28
2365 4224 3.311110 TCTGTGGGTGAGCGGGTC 61.311 66.667 0.00 0.00 0.00 4.46
2366 4225 4.742201 CTGTGGGTGAGCGGGTCG 62.742 72.222 2.41 0.00 0.00 4.79
2368 4227 4.436998 GTGGGTGAGCGGGTCGAG 62.437 72.222 2.41 0.00 0.00 4.04
2371 4230 3.827898 GGTGAGCGGGTCGAGGAG 61.828 72.222 2.41 0.00 0.00 3.69
2372 4231 2.750637 GTGAGCGGGTCGAGGAGA 60.751 66.667 2.41 0.00 0.00 3.71
2374 4233 2.341101 TGAGCGGGTCGAGGAGAAC 61.341 63.158 2.41 0.00 35.29 3.01
2392 4251 2.739287 CGCGCCCGGTAAACAAGA 60.739 61.111 0.00 0.00 0.00 3.02
2393 4252 2.319096 CGCGCCCGGTAAACAAGAA 61.319 57.895 0.00 0.00 0.00 2.52
2429 4288 1.178276 CCTCGGACAGTGTTAGCTCT 58.822 55.000 0.00 0.00 0.00 4.09
2494 4618 1.362406 GCGGTAGAAGTGGCAAGCTC 61.362 60.000 0.00 0.00 0.00 4.09
2495 4619 1.078759 CGGTAGAAGTGGCAAGCTCG 61.079 60.000 0.00 0.00 0.00 5.03
2512 4636 1.008194 CGATTTGGCATGGCATCGG 60.008 57.895 28.14 15.13 35.86 4.18
2516 4640 0.897401 TTTGGCATGGCATCGGTTCA 60.897 50.000 23.96 2.73 0.00 3.18
2543 4667 8.567417 AGAGGTTTTGTCTCTCCTAGTGAAACT 61.567 40.741 0.00 0.00 43.65 2.66
2559 4683 4.206200 GTGAAACTGTGTTGCATTTAACCG 59.794 41.667 0.00 0.00 0.00 4.44
2560 4684 4.142359 TGAAACTGTGTTGCATTTAACCGT 60.142 37.500 0.00 0.00 0.00 4.83
2568 4692 2.940147 TGCATTTAACCGTGTTGCATC 58.060 42.857 0.00 0.00 38.32 3.91
2644 4770 1.820519 CCATAGCTCCTTGCAAAAGCA 59.179 47.619 26.50 16.75 45.94 3.91
2686 4812 0.407528 TTTCCACCCCAGCTGCAATA 59.592 50.000 8.66 0.00 0.00 1.90
2770 4900 5.181433 GCTTTAGCTATATGTAAGTTGCCCC 59.819 44.000 0.00 0.00 38.21 5.80
2776 4906 7.351166 AGCTATATGTAAGTTGCCCCTTTTTA 58.649 34.615 0.00 0.00 0.00 1.52
2795 4925 7.873505 CCTTTTTAAATTTGGGTTGGTCGAATA 59.126 33.333 0.00 0.00 0.00 1.75
2796 4926 9.430623 CTTTTTAAATTTGGGTTGGTCGAATAT 57.569 29.630 0.00 0.00 0.00 1.28
2797 4927 9.780186 TTTTTAAATTTGGGTTGGTCGAATATT 57.220 25.926 0.00 0.00 0.00 1.28
2798 4928 9.780186 TTTTAAATTTGGGTTGGTCGAATATTT 57.220 25.926 0.00 0.00 0.00 1.40
2799 4929 8.764524 TTAAATTTGGGTTGGTCGAATATTTG 57.235 30.769 0.00 0.00 0.00 2.32
2800 4930 5.993748 ATTTGGGTTGGTCGAATATTTGT 57.006 34.783 2.57 0.00 0.00 2.83
2801 4931 5.379732 TTTGGGTTGGTCGAATATTTGTC 57.620 39.130 2.57 0.00 0.00 3.18
2802 4932 3.349022 TGGGTTGGTCGAATATTTGTCC 58.651 45.455 11.01 11.01 0.00 4.02
2803 4933 3.244946 TGGGTTGGTCGAATATTTGTCCA 60.245 43.478 15.35 15.35 0.00 4.02
2804 4934 3.951680 GGGTTGGTCGAATATTTGTCCAT 59.048 43.478 18.74 0.00 31.37 3.41
2805 4935 5.127491 GGGTTGGTCGAATATTTGTCCATA 58.873 41.667 18.74 9.76 31.37 2.74
2809 4939 7.860872 GGTTGGTCGAATATTTGTCCATATTTC 59.139 37.037 18.74 9.62 30.76 2.17
2813 4943 7.360101 GGTCGAATATTTGTCCATATTTCTCCG 60.360 40.741 12.58 0.00 30.76 4.63
2878 5168 5.328565 TGTTTCATGATGGGTTGGATGTTA 58.671 37.500 0.00 0.00 0.00 2.41
2899 5189 6.757947 TGTTAGGTGAGTGTAAGTGTAAACAC 59.242 38.462 5.07 5.07 45.06 3.32
3014 5304 8.767085 CAATTTCTGTTCAAATTATGTGCAAGT 58.233 29.630 0.00 0.00 34.77 3.16
3019 5309 8.602328 TCTGTTCAAATTATGTGCAAGTTTTTG 58.398 29.630 0.00 0.00 37.36 2.44
3051 5341 9.143155 TGTTTTCTATTTTTCTCTTTAAGGGCT 57.857 29.630 0.00 0.00 0.00 5.19
3159 5451 7.498900 TGTGTGAATTCTACTCAAGTGTGAAAT 59.501 33.333 7.05 0.00 31.88 2.17
3266 5558 9.248291 CTTTAATGGTAATAACAATGCCATGAC 57.752 33.333 0.00 0.00 39.59 3.06
3287 5579 6.837312 TGACTCCATTCTTCCTTAGAAAACA 58.163 36.000 0.00 0.00 45.62 2.83
3307 5599 9.853921 GAAAACATCACTTTTATTTTTGCAGAG 57.146 29.630 0.00 0.00 0.00 3.35
3308 5600 8.947055 AAACATCACTTTTATTTTTGCAGAGT 57.053 26.923 0.00 0.00 0.00 3.24
3311 5603 8.629158 ACATCACTTTTATTTTTGCAGAGTGTA 58.371 29.630 0.00 0.00 35.68 2.90
3384 5676 8.494347 GCAATTTCAGTGCAAATTTGTATGTAA 58.506 29.630 19.03 14.21 41.80 2.41
3385 5677 9.796062 CAATTTCAGTGCAAATTTGTATGTAAC 57.204 29.630 19.03 8.55 34.37 2.50
3390 5682 9.029243 TCAGTGCAAATTTGTATGTAACTTTTG 57.971 29.630 19.03 4.83 0.00 2.44
3391 5683 8.816144 CAGTGCAAATTTGTATGTAACTTTTGT 58.184 29.630 19.03 0.00 31.51 2.83
3392 5684 9.377312 AGTGCAAATTTGTATGTAACTTTTGTT 57.623 25.926 19.03 0.00 45.76 2.83
3393 5685 9.980780 GTGCAAATTTGTATGTAACTTTTGTTT 57.019 25.926 19.03 0.00 43.32 2.83
3416 5708 7.938140 TTCTTCTTCAAGGGTAATACCAATG 57.062 36.000 12.03 9.29 41.02 2.82
3519 5815 5.332743 TGCCACTAATTCATTCCTTCCTTT 58.667 37.500 0.00 0.00 0.00 3.11
3520 5816 6.489603 TGCCACTAATTCATTCCTTCCTTTA 58.510 36.000 0.00 0.00 0.00 1.85
3811 6110 4.420522 TGCTATCTCACCATGCAACATA 57.579 40.909 0.00 0.00 0.00 2.29
3815 6114 2.345876 TCTCACCATGCAACATACACG 58.654 47.619 0.00 0.00 0.00 4.49
3821 6122 4.382457 CACCATGCAACATACACGAAAAAG 59.618 41.667 0.00 0.00 0.00 2.27
3823 6124 4.616802 CCATGCAACATACACGAAAAAGAC 59.383 41.667 0.00 0.00 0.00 3.01
3830 6131 4.695455 ACATACACGAAAAAGACCCATCAG 59.305 41.667 0.00 0.00 0.00 2.90
3837 6138 4.216257 CGAAAAAGACCCATCAGAACATGT 59.784 41.667 0.00 0.00 0.00 3.21
3867 6168 4.939439 ACATATAGAAAACCCCACGTCAAC 59.061 41.667 0.00 0.00 0.00 3.18
3878 6179 2.350388 CCCACGTCAACTTGCAACATAC 60.350 50.000 0.00 0.00 0.00 2.39
3885 6186 6.072728 ACGTCAACTTGCAACATACATATTGT 60.073 34.615 0.00 0.00 0.00 2.71
3918 6219 2.083774 CAACAACGTGCAGGGTATCAT 58.916 47.619 11.67 0.00 0.00 2.45
3939 6240 6.921412 TCATCTAATACCATCAAAACCCCAT 58.079 36.000 0.00 0.00 0.00 4.00
3940 6241 6.777091 TCATCTAATACCATCAAAACCCCATG 59.223 38.462 0.00 0.00 0.00 3.66
3943 6244 0.116940 ACCATCAAAACCCCATGGCT 59.883 50.000 6.09 0.00 40.85 4.75
3945 6246 1.559368 CATCAAAACCCCATGGCTCA 58.441 50.000 6.09 0.00 33.59 4.26
3947 6248 2.323999 TCAAAACCCCATGGCTCAAT 57.676 45.000 6.09 0.00 33.59 2.57
3949 6250 2.302445 TCAAAACCCCATGGCTCAATTG 59.698 45.455 6.09 7.61 33.59 2.32
3950 6251 2.302445 CAAAACCCCATGGCTCAATTGA 59.698 45.455 6.09 8.12 33.59 2.57
3951 6252 2.555732 AACCCCATGGCTCAATTGAT 57.444 45.000 8.96 0.00 33.59 2.57
3952 6253 1.784358 ACCCCATGGCTCAATTGATG 58.216 50.000 8.96 4.17 33.59 3.07
3953 6254 1.288633 ACCCCATGGCTCAATTGATGA 59.711 47.619 8.96 0.00 33.78 2.92
3954 6255 1.684983 CCCCATGGCTCAATTGATGAC 59.315 52.381 8.96 6.22 33.47 3.06
3955 6256 2.662866 CCCATGGCTCAATTGATGACT 58.337 47.619 8.96 0.00 33.47 3.41
3956 6257 3.435457 CCCCATGGCTCAATTGATGACTA 60.435 47.826 8.96 0.28 33.47 2.59
3957 6258 3.819337 CCCATGGCTCAATTGATGACTAG 59.181 47.826 8.96 0.00 33.47 2.57
3958 6259 4.458397 CCATGGCTCAATTGATGACTAGT 58.542 43.478 8.96 0.00 33.47 2.57
3964 6265 3.713764 CTCAATTGATGACTAGTCCCCCT 59.286 47.826 20.11 2.41 33.47 4.79
3965 6266 3.455910 TCAATTGATGACTAGTCCCCCTG 59.544 47.826 20.11 9.78 31.50 4.45
3980 6283 2.703007 CCCCCTGACCTATTTCTCTCAG 59.297 54.545 0.00 0.00 0.00 3.35
4011 6314 0.112995 ACCACCTCACCATGCAACAT 59.887 50.000 0.00 0.00 0.00 2.71
4029 6332 3.233507 ACATGCATGAAAAAGACCCACT 58.766 40.909 32.75 2.54 0.00 4.00
4030 6333 3.006110 ACATGCATGAAAAAGACCCACTG 59.994 43.478 32.75 2.21 0.00 3.66
4034 6337 3.555586 GCATGAAAAAGACCCACTGCAAT 60.556 43.478 0.00 0.00 0.00 3.56
4051 6354 2.030007 GCAATATGCAACCACACACAGT 60.030 45.455 0.00 0.00 44.26 3.55
4076 6381 1.269012 CCCCACCTGAACATGCAAAT 58.731 50.000 0.00 0.00 0.00 2.32
4078 6383 3.033184 CCCCACCTGAACATGCAAATAT 58.967 45.455 0.00 0.00 0.00 1.28
4079 6384 3.181473 CCCCACCTGAACATGCAAATATG 60.181 47.826 0.00 0.00 0.00 1.78
4162 6468 9.956720 ATTTTCTGTCACTCAAAATCAACTAAG 57.043 29.630 0.00 0.00 0.00 2.18
4164 6470 8.506168 TTCTGTCACTCAAAATCAACTAAGTT 57.494 30.769 0.00 0.00 0.00 2.66
4172 6478 7.066525 ACTCAAAATCAACTAAGTTTTCGGTCA 59.933 33.333 0.00 0.00 0.00 4.02
4222 6951 5.851177 CACTTGTTGGACACGCTATAAAAAG 59.149 40.000 0.00 0.00 0.00 2.27
4225 6954 4.214545 TGTTGGACACGCTATAAAAAGGTG 59.785 41.667 0.00 0.00 34.87 4.00
4235 6964 2.757894 TAAAAAGGTGACTGGCCCAA 57.242 45.000 0.00 0.00 42.68 4.12
4238 6967 2.101640 AAAGGTGACTGGCCCAAATT 57.898 45.000 0.00 0.00 42.68 1.82
4241 6970 1.005924 AGGTGACTGGCCCAAATTAGG 59.994 52.381 0.00 0.00 41.13 2.69
4278 7022 6.430925 TCCAAAACATTGTAGATCACTTCAGG 59.569 38.462 0.00 0.00 0.00 3.86
4297 7041 6.642733 TCAGGAGGATCTGTAGGAAATTTT 57.357 37.500 0.00 0.00 36.25 1.82
4310 7054 9.565213 CTGTAGGAAATTTTCTATCAAAGCAAG 57.435 33.333 9.46 0.00 0.00 4.01
4327 7071 9.155975 TCAAAGCAAGTCATATTTCTAGTCTTC 57.844 33.333 0.00 0.00 0.00 2.87
4341 7085 6.510879 TCTAGTCTTCTAAATTGTCGAGCA 57.489 37.500 0.00 0.00 0.00 4.26
4375 7119 4.261155 CCGAGAACAACAAATTCTGCTGAA 60.261 41.667 8.59 8.59 36.53 3.02
4403 7147 5.003096 AGGAAATGAGTCAATCCCAGTTT 57.997 39.130 19.53 5.28 32.15 2.66
4405 7149 6.552008 AGGAAATGAGTCAATCCCAGTTTAA 58.448 36.000 19.53 0.00 32.15 1.52
4406 7150 7.010160 AGGAAATGAGTCAATCCCAGTTTAAA 58.990 34.615 19.53 0.00 32.15 1.52
4407 7151 7.508977 AGGAAATGAGTCAATCCCAGTTTAAAA 59.491 33.333 19.53 0.00 32.15 1.52
4408 7152 8.147704 GGAAATGAGTCAATCCCAGTTTAAAAA 58.852 33.333 14.55 0.00 0.00 1.94
4409 7153 9.196552 GAAATGAGTCAATCCCAGTTTAAAAAG 57.803 33.333 0.00 0.00 0.00 2.27
4411 7155 8.655935 ATGAGTCAATCCCAGTTTAAAAAGAT 57.344 30.769 0.00 0.00 0.00 2.40
4412 7156 9.753674 ATGAGTCAATCCCAGTTTAAAAAGATA 57.246 29.630 0.00 0.00 0.00 1.98
4413 7157 9.753674 TGAGTCAATCCCAGTTTAAAAAGATAT 57.246 29.630 0.00 0.00 0.00 1.63
4415 7159 9.753674 AGTCAATCCCAGTTTAAAAAGATATCA 57.246 29.630 5.32 0.00 0.00 2.15
4419 7163 9.627123 AATCCCAGTTTAAAAAGATATCATCGA 57.373 29.630 5.32 0.00 0.00 3.59
4420 7164 9.799106 ATCCCAGTTTAAAAAGATATCATCGAT 57.201 29.630 5.32 0.00 0.00 3.59
4429 7173 8.450578 AAAAAGATATCATCGATAACAAGGCA 57.549 30.769 5.32 0.00 0.00 4.75
4430 7174 8.627208 AAAAGATATCATCGATAACAAGGCAT 57.373 30.769 5.32 0.00 0.00 4.40
4436 7186 5.402398 TCATCGATAACAAGGCATCTATCG 58.598 41.667 0.00 9.78 42.74 2.92
4445 7195 4.336433 ACAAGGCATCTATCGTTCAAATGG 59.664 41.667 0.00 0.00 0.00 3.16
4452 7202 6.481134 CATCTATCGTTCAAATGGTTCACAG 58.519 40.000 0.00 0.00 0.00 3.66
4457 7207 3.559655 CGTTCAAATGGTTCACAGACTGA 59.440 43.478 10.08 0.00 0.00 3.41
4459 7209 3.476552 TCAAATGGTTCACAGACTGACC 58.523 45.455 10.08 7.17 0.00 4.02
4464 7214 3.248024 TGGTTCACAGACTGACCCTATT 58.752 45.455 10.08 0.00 32.46 1.73
4470 7220 6.428083 TCACAGACTGACCCTATTTTTGTA 57.572 37.500 10.08 0.00 0.00 2.41
4503 7253 0.681243 ATCCTTCTTTTCCAGCCGGC 60.681 55.000 21.89 21.89 0.00 6.13
4588 7338 2.019951 CTTCGGGTTCCACGTCACG 61.020 63.158 0.00 0.00 0.00 4.35
4657 7407 2.233654 CGGATGCGGCTTCTTCGAG 61.234 63.158 14.51 0.39 0.00 4.04
4798 7548 0.700564 TGGACTCCCAGGTACGTACT 59.299 55.000 24.07 8.57 37.58 2.73
4884 7635 1.404391 CTGAGACGTATTACTGCGGGT 59.596 52.381 0.00 0.00 34.49 5.28
4900 7651 2.646719 GTGCAGGTCGTGACGGTA 59.353 61.111 4.70 0.00 0.00 4.02
5116 7867 3.628646 GACCATCAACAGCCCCGCT 62.629 63.158 0.00 0.00 40.77 5.52
5252 8003 1.276622 GGGCTCCCACTTCTACTTCA 58.723 55.000 0.00 0.00 35.81 3.02
5536 8289 4.101790 AAGTTGCCGCGGCGATTG 62.102 61.111 40.71 8.56 45.51 2.67
5583 8337 3.295093 TCTGTTGGGATGCAGAAAAACA 58.705 40.909 0.00 0.00 38.61 2.83
5584 8338 3.318839 TCTGTTGGGATGCAGAAAAACAG 59.681 43.478 20.64 20.64 43.62 3.16
5585 8339 3.295093 TGTTGGGATGCAGAAAAACAGA 58.705 40.909 0.00 0.00 0.00 3.41
5586 8340 3.318839 TGTTGGGATGCAGAAAAACAGAG 59.681 43.478 0.00 0.00 0.00 3.35
5587 8341 3.507162 TGGGATGCAGAAAAACAGAGA 57.493 42.857 0.00 0.00 0.00 3.10
5651 8405 0.596082 CGCCCGATGAAAAACTGGTT 59.404 50.000 0.00 0.00 0.00 3.67
5671 8425 5.106712 TGGTTAACTTCGTGCAGAAATGATC 60.107 40.000 5.42 0.00 38.57 2.92
5804 8596 5.059833 GGGACCAATACAGAGAACATGATC 58.940 45.833 0.00 0.00 0.00 2.92
5876 8668 7.093354 TGTAGCACATGAAAAGAAAAACACAA 58.907 30.769 0.00 0.00 0.00 3.33
5960 8777 7.923344 ACGTATGAAGACTATCAAATCAAGGAG 59.077 37.037 0.00 0.00 32.06 3.69
6292 9119 2.512286 GCAGATGCGGCTGTGCTA 60.512 61.111 12.50 0.00 38.17 3.49
6293 9120 2.817423 GCAGATGCGGCTGTGCTAC 61.817 63.158 12.50 0.00 38.17 3.58
6294 9121 1.448365 CAGATGCGGCTGTGCTACA 60.448 57.895 0.00 0.00 35.36 2.74
6295 9122 1.020861 CAGATGCGGCTGTGCTACAA 61.021 55.000 0.00 0.00 35.36 2.41
6337 9175 1.373497 GAGGCGAGTGAGTGTGTGG 60.373 63.158 0.00 0.00 0.00 4.17
6369 9207 2.034048 GAGGGAATCAGGACGAGGCC 62.034 65.000 0.00 0.00 0.00 5.19
6387 9228 1.602377 GCCCGCGTTTTTATAGCTGAT 59.398 47.619 4.92 0.00 0.00 2.90
6414 9255 1.682344 GAGTTGGGGAATGGGGTGC 60.682 63.158 0.00 0.00 0.00 5.01
6415 9256 2.683572 GTTGGGGAATGGGGTGCC 60.684 66.667 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 0.590195 GATATGAAGGCTTGCAGCGG 59.410 55.000 3.46 0.00 43.62 5.52
113 114 2.412847 GCATCAGTAACAAGACCGCAAC 60.413 50.000 0.00 0.00 0.00 4.17
160 162 5.596361 ACAGATACAGATTAGACCAGACCTG 59.404 44.000 0.00 0.00 0.00 4.00
217 227 5.651139 CAGCTATCCTGAATTATTGGGATGG 59.349 44.000 14.87 13.50 44.64 3.51
218 228 6.243900 ACAGCTATCCTGAATTATTGGGATG 58.756 40.000 14.87 6.42 44.64 3.51
286 298 1.227383 GTTCCGATGGGGCCTGAAT 59.773 57.895 0.84 0.00 34.94 2.57
289 301 4.506255 GGGTTCCGATGGGGCCTG 62.506 72.222 0.84 0.00 34.94 4.85
364 376 1.590238 CCTTAGAAGCAGCGATTGTCG 59.410 52.381 0.00 0.00 43.89 4.35
368 386 2.703007 AGATCCCTTAGAAGCAGCGATT 59.297 45.455 0.00 0.00 0.00 3.34
448 466 5.474876 GGATATGTTCATTCCACATCTTCCC 59.525 44.000 0.00 0.00 36.28 3.97
461 479 1.260561 GAAACGCGCGGATATGTTCAT 59.739 47.619 35.22 5.42 0.00 2.57
465 483 0.596600 ATCGAAACGCGCGGATATGT 60.597 50.000 35.22 7.83 40.61 2.29
672 2451 2.814604 CCATGGACGGAGCATCGA 59.185 61.111 5.56 0.00 34.37 3.59
1137 2921 3.083349 TCGTGGATGGCCCTCCTG 61.083 66.667 25.48 18.18 36.20 3.86
1355 3139 3.851128 GCCTCGGCAGTAGGGACC 61.851 72.222 2.41 0.00 41.49 4.46
1356 3140 3.851128 GGCCTCGGCAGTAGGGAC 61.851 72.222 10.51 0.00 44.11 4.46
1357 3141 4.392166 TGGCCTCGGCAGTAGGGA 62.392 66.667 10.51 0.00 44.11 4.20
1358 3142 4.162690 GTGGCCTCGGCAGTAGGG 62.163 72.222 10.51 0.00 44.11 3.53
1359 3143 3.077556 AGTGGCCTCGGCAGTAGG 61.078 66.667 10.51 0.00 39.98 3.18
1418 3202 2.797866 CTACGCCAGAAGCACGTCGT 62.798 60.000 0.00 0.00 44.04 4.34
1432 3216 1.499049 GGAATCCGATGGTTCTACGC 58.501 55.000 0.00 0.00 0.00 4.42
1491 3275 5.266733 ACTCTTTTTGCTGCTTTGATTGA 57.733 34.783 0.00 0.00 0.00 2.57
1493 3277 4.741676 CGAACTCTTTTTGCTGCTTTGATT 59.258 37.500 0.00 0.00 0.00 2.57
1494 3278 4.293415 CGAACTCTTTTTGCTGCTTTGAT 58.707 39.130 0.00 0.00 0.00 2.57
1495 3279 3.489059 CCGAACTCTTTTTGCTGCTTTGA 60.489 43.478 0.00 0.00 0.00 2.69
1496 3280 2.791004 CCGAACTCTTTTTGCTGCTTTG 59.209 45.455 0.00 0.00 0.00 2.77
1497 3281 2.799562 GCCGAACTCTTTTTGCTGCTTT 60.800 45.455 0.00 0.00 0.00 3.51
1498 3282 1.269257 GCCGAACTCTTTTTGCTGCTT 60.269 47.619 0.00 0.00 0.00 3.91
1499 3283 0.312102 GCCGAACTCTTTTTGCTGCT 59.688 50.000 0.00 0.00 0.00 4.24
1500 3284 0.030638 TGCCGAACTCTTTTTGCTGC 59.969 50.000 0.00 0.00 0.00 5.25
1501 3285 2.712057 ATGCCGAACTCTTTTTGCTG 57.288 45.000 0.00 0.00 0.00 4.41
1502 3286 2.887152 AGAATGCCGAACTCTTTTTGCT 59.113 40.909 0.00 0.00 0.00 3.91
1503 3287 3.237628 GAGAATGCCGAACTCTTTTTGC 58.762 45.455 0.00 0.00 0.00 3.68
1504 3288 3.482786 CGAGAATGCCGAACTCTTTTTG 58.517 45.455 0.00 0.00 0.00 2.44
1505 3289 2.095718 GCGAGAATGCCGAACTCTTTTT 60.096 45.455 0.00 0.00 0.00 1.94
1514 3298 1.014044 GTTCAGTGCGAGAATGCCGA 61.014 55.000 0.00 0.00 0.00 5.54
1523 3317 0.387929 AGGAGTTTCGTTCAGTGCGA 59.612 50.000 0.00 0.00 36.51 5.10
1529 3323 5.642063 GGATTGAACATAGGAGTTTCGTTCA 59.358 40.000 0.00 0.00 42.98 3.18
1532 3326 4.181578 CGGATTGAACATAGGAGTTTCGT 58.818 43.478 0.00 0.00 0.00 3.85
1533 3327 4.181578 ACGGATTGAACATAGGAGTTTCG 58.818 43.478 0.00 0.00 0.00 3.46
1539 3333 4.224147 TCCTGAAACGGATTGAACATAGGA 59.776 41.667 0.00 0.00 0.00 2.94
1543 3337 3.009033 TCCTCCTGAAACGGATTGAACAT 59.991 43.478 0.00 0.00 31.43 2.71
1544 3338 2.370519 TCCTCCTGAAACGGATTGAACA 59.629 45.455 0.00 0.00 31.43 3.18
1545 3339 3.053831 TCCTCCTGAAACGGATTGAAC 57.946 47.619 0.00 0.00 31.43 3.18
1547 3341 2.637872 ACTTCCTCCTGAAACGGATTGA 59.362 45.455 0.00 0.00 31.06 2.57
1548 3342 2.744202 CACTTCCTCCTGAAACGGATTG 59.256 50.000 0.00 0.00 31.06 2.67
1549 3343 2.290323 CCACTTCCTCCTGAAACGGATT 60.290 50.000 0.00 0.00 31.06 3.01
1675 3473 1.665916 CAGTGACCTGCAGGACGTG 60.666 63.158 39.19 27.06 38.94 4.49
1679 3477 2.217038 GGGACAGTGACCTGCAGGA 61.217 63.158 39.19 15.70 42.81 3.86
1793 3607 7.414098 GCCGAATGGAACGCTATTTAATGATAT 60.414 37.037 0.00 0.00 37.49 1.63
1794 3608 6.128391 GCCGAATGGAACGCTATTTAATGATA 60.128 38.462 0.00 0.00 37.49 2.15
1797 3616 4.219033 GCCGAATGGAACGCTATTTAATG 58.781 43.478 0.00 0.00 37.49 1.90
1800 3619 2.215196 GGCCGAATGGAACGCTATTTA 58.785 47.619 0.00 0.00 37.49 1.40
1802 3621 1.157870 CGGCCGAATGGAACGCTATT 61.158 55.000 24.07 0.00 37.49 1.73
1803 3622 1.594293 CGGCCGAATGGAACGCTAT 60.594 57.895 24.07 0.00 37.49 2.97
1812 3631 3.108144 CAAATCTTTTAGCGGCCGAATG 58.892 45.455 33.48 16.53 0.00 2.67
1814 3633 1.470890 CCAAATCTTTTAGCGGCCGAA 59.529 47.619 33.48 13.24 0.00 4.30
1824 3643 0.098728 CGATCGGCGCCAAATCTTTT 59.901 50.000 28.98 0.22 0.00 2.27
1827 3646 2.588877 CCGATCGGCGCCAAATCT 60.589 61.111 28.98 4.93 39.11 2.40
1828 3647 2.882366 GACCGATCGGCGCCAAATC 61.882 63.158 33.62 25.30 39.32 2.17
1829 3648 2.895372 GACCGATCGGCGCCAAAT 60.895 61.111 33.62 19.46 39.32 2.32
1830 3649 3.673956 ATGACCGATCGGCGCCAAA 62.674 57.895 33.62 14.85 39.32 3.28
1845 3664 0.598419 CTAATCAGAGCCGCGCATGA 60.598 55.000 8.75 5.80 32.73 3.07
1859 3692 5.005490 GTGCTACCGCTAACTGTTTCTAATC 59.995 44.000 0.00 0.00 36.97 1.75
1860 3693 4.868734 GTGCTACCGCTAACTGTTTCTAAT 59.131 41.667 0.00 0.00 36.97 1.73
1862 3695 3.367703 GGTGCTACCGCTAACTGTTTCTA 60.368 47.826 0.00 0.00 36.97 2.10
1886 3719 2.186076 CGGCGCAACAAACTAAACAAA 58.814 42.857 10.83 0.00 0.00 2.83
1887 3720 1.132643 ACGGCGCAACAAACTAAACAA 59.867 42.857 10.83 0.00 0.00 2.83
1888 3721 0.733729 ACGGCGCAACAAACTAAACA 59.266 45.000 10.83 0.00 0.00 2.83
1889 3722 1.391787 GACGGCGCAACAAACTAAAC 58.608 50.000 10.83 0.00 0.00 2.01
1890 3723 0.308376 GGACGGCGCAACAAACTAAA 59.692 50.000 10.83 0.00 0.00 1.85
2029 3874 5.313712 TGTTTCTTTATCGAAAAGAGGCCT 58.686 37.500 3.86 3.86 37.54 5.19
2057 3902 3.067461 AGCGGATCTTGACACTAGATCAC 59.933 47.826 15.73 9.20 46.35 3.06
2091 3936 0.994995 CAGTACAACTAGCGCTGCTG 59.005 55.000 22.90 16.37 40.10 4.41
2102 3947 1.493772 TGCGCACAGTACAGTACAAC 58.506 50.000 5.66 0.00 0.00 3.32
2104 3949 1.731098 CGATGCGCACAGTACAGTACA 60.731 52.381 14.90 0.00 0.00 2.90
2105 3950 0.914551 CGATGCGCACAGTACAGTAC 59.085 55.000 14.90 2.05 0.00 2.73
2106 3951 0.524414 ACGATGCGCACAGTACAGTA 59.476 50.000 14.90 0.00 0.00 2.74
2107 3952 1.008875 CACGATGCGCACAGTACAGT 61.009 55.000 14.90 1.99 0.00 3.55
2108 3953 1.686566 CCACGATGCGCACAGTACAG 61.687 60.000 14.90 4.06 0.00 2.74
2121 3966 2.489073 GGGGAATTCAATAGGCCACGAT 60.489 50.000 5.01 0.00 0.00 3.73
2139 3984 0.467290 CCGTCCATTACCATTGGGGG 60.467 60.000 7.78 3.32 42.91 5.40
2140 3985 0.467290 CCCGTCCATTACCATTGGGG 60.467 60.000 7.78 0.00 44.81 4.96
2171 4016 5.120208 GGATGGTCCACGATAAATGATTACG 59.880 44.000 0.00 0.00 36.28 3.18
2249 4094 2.363276 TGACGGCCGGTCTACCAT 60.363 61.111 31.76 4.91 46.24 3.55
2259 4104 1.065709 TGAAAATCCTACCTGACGGCC 60.066 52.381 0.00 0.00 0.00 6.13
2260 4105 2.396590 TGAAAATCCTACCTGACGGC 57.603 50.000 0.00 0.00 0.00 5.68
2261 4106 3.627577 CCATTGAAAATCCTACCTGACGG 59.372 47.826 0.00 0.00 0.00 4.79
2262 4107 3.627577 CCCATTGAAAATCCTACCTGACG 59.372 47.826 0.00 0.00 0.00 4.35
2272 4117 4.082787 TGAAAGAGACGCCCATTGAAAATC 60.083 41.667 0.00 0.00 0.00 2.17
2344 4203 2.574018 CCGCTCACCCACAGACTCA 61.574 63.158 0.00 0.00 0.00 3.41
2357 4216 2.490685 GTTCTCCTCGACCCGCTC 59.509 66.667 0.00 0.00 0.00 5.03
2358 4217 3.069318 GGTTCTCCTCGACCCGCT 61.069 66.667 0.00 0.00 0.00 5.52
2359 4218 4.493747 CGGTTCTCCTCGACCCGC 62.494 72.222 0.00 0.00 40.91 6.13
2369 4228 3.938019 TTTACCGGGCGCGGTTCTC 62.938 63.158 46.01 0.00 42.86 2.87
2371 4230 3.792047 GTTTACCGGGCGCGGTTC 61.792 66.667 46.01 32.04 42.86 3.62
2372 4231 4.622650 TGTTTACCGGGCGCGGTT 62.623 61.111 46.01 31.01 42.86 4.44
2374 4233 3.795342 CTTGTTTACCGGGCGCGG 61.795 66.667 37.34 37.34 0.00 6.46
2375 4234 2.235536 CTTCTTGTTTACCGGGCGCG 62.236 60.000 17.31 17.31 0.00 6.86
2376 4235 1.232621 ACTTCTTGTTTACCGGGCGC 61.233 55.000 6.32 0.00 0.00 6.53
2377 4236 1.232119 AACTTCTTGTTTACCGGGCG 58.768 50.000 6.32 0.00 34.84 6.13
2398 4257 2.345991 CCGAGGCGGTGAGGAAAA 59.654 61.111 0.00 0.00 42.73 2.29
2408 4267 1.805945 GCTAACACTGTCCGAGGCG 60.806 63.158 0.00 0.00 0.00 5.52
2411 4270 2.097791 GGTAGAGCTAACACTGTCCGAG 59.902 54.545 0.00 0.00 0.00 4.63
2416 4275 3.006967 CCAGTTGGTAGAGCTAACACTGT 59.993 47.826 16.53 0.00 40.49 3.55
2429 4288 8.385491 AGATCATTGCAATATATCCAGTTGGTA 58.615 33.333 21.64 0.00 36.34 3.25
2494 4618 1.008194 CCGATGCCATGCCAAATCG 60.008 57.895 9.32 9.32 41.14 3.34
2495 4619 0.461135 AACCGATGCCATGCCAAATC 59.539 50.000 0.00 0.00 0.00 2.17
2512 4636 4.709250 AGGAGAGACAAAACCTCTTGAAC 58.291 43.478 0.00 0.00 40.78 3.18
2516 4640 5.148502 TCACTAGGAGAGACAAAACCTCTT 58.851 41.667 0.00 0.00 40.78 2.85
2543 4667 3.439293 CAACACGGTTAAATGCAACACA 58.561 40.909 0.00 0.00 0.00 3.72
2545 4669 2.159240 TGCAACACGGTTAAATGCAACA 60.159 40.909 0.00 0.00 43.39 3.33
2549 4673 2.916716 CTGATGCAACACGGTTAAATGC 59.083 45.455 0.00 0.00 37.52 3.56
2554 4678 2.139917 GACACTGATGCAACACGGTTA 58.860 47.619 0.00 0.00 0.00 2.85
2555 4679 0.944386 GACACTGATGCAACACGGTT 59.056 50.000 0.00 0.00 0.00 4.44
2556 4680 0.179059 TGACACTGATGCAACACGGT 60.179 50.000 0.00 0.00 0.00 4.83
2557 4681 0.235665 GTGACACTGATGCAACACGG 59.764 55.000 0.00 0.00 0.00 4.94
2559 4683 2.738846 CCTAGTGACACTGATGCAACAC 59.261 50.000 18.58 0.00 0.00 3.32
2560 4684 2.632512 TCCTAGTGACACTGATGCAACA 59.367 45.455 18.58 0.00 0.00 3.33
2568 4692 6.269315 GTGAATCAGTATCCTAGTGACACTG 58.731 44.000 18.58 11.34 40.64 3.66
2596 4720 6.293407 GGACAATGAGAATCTCGAAAACACAA 60.293 38.462 5.73 0.00 34.92 3.33
2644 4770 2.363306 TCAAGTGGGTGTTGCAAGAT 57.637 45.000 0.00 0.00 0.00 2.40
2770 4900 7.722795 ATTCGACCAACCCAAATTTAAAAAG 57.277 32.000 0.00 0.00 0.00 2.27
2776 4906 6.764379 ACAAATATTCGACCAACCCAAATTT 58.236 32.000 0.00 0.00 0.00 1.82
2795 4925 5.110814 TGGACGGAGAAATATGGACAAAT 57.889 39.130 0.00 0.00 0.00 2.32
2796 4926 4.561500 TGGACGGAGAAATATGGACAAA 57.438 40.909 0.00 0.00 0.00 2.83
2797 4927 4.771114 ATGGACGGAGAAATATGGACAA 57.229 40.909 0.00 0.00 0.00 3.18
2798 4928 4.408921 AGAATGGACGGAGAAATATGGACA 59.591 41.667 0.00 0.00 0.00 4.02
2799 4929 4.962155 AGAATGGACGGAGAAATATGGAC 58.038 43.478 0.00 0.00 0.00 4.02
2800 4930 5.630415 AAGAATGGACGGAGAAATATGGA 57.370 39.130 0.00 0.00 0.00 3.41
2801 4931 5.590259 ACAAAGAATGGACGGAGAAATATGG 59.410 40.000 0.00 0.00 0.00 2.74
2802 4932 6.094048 ACACAAAGAATGGACGGAGAAATATG 59.906 38.462 0.00 0.00 0.00 1.78
2803 4933 6.180472 ACACAAAGAATGGACGGAGAAATAT 58.820 36.000 0.00 0.00 0.00 1.28
2804 4934 5.556915 ACACAAAGAATGGACGGAGAAATA 58.443 37.500 0.00 0.00 0.00 1.40
2805 4935 4.398319 ACACAAAGAATGGACGGAGAAAT 58.602 39.130 0.00 0.00 0.00 2.17
2809 4939 2.766313 TGACACAAAGAATGGACGGAG 58.234 47.619 0.00 0.00 0.00 4.63
2813 4943 6.418819 CACAAATCTTGACACAAAGAATGGAC 59.581 38.462 0.00 0.00 39.54 4.02
2878 5168 4.142093 ACGTGTTTACACTTACACTCACCT 60.142 41.667 10.92 0.00 44.34 4.00
2971 5261 7.066284 ACAGAAATTGCACTTCCATAGTATGAC 59.934 37.037 11.91 0.00 34.56 3.06
2972 5262 7.112122 ACAGAAATTGCACTTCCATAGTATGA 58.888 34.615 11.91 0.00 34.56 2.15
2973 5263 7.325660 ACAGAAATTGCACTTCCATAGTATG 57.674 36.000 2.90 2.90 34.56 2.39
2976 5266 5.769662 TGAACAGAAATTGCACTTCCATAGT 59.230 36.000 4.46 0.00 37.68 2.12
2977 5267 6.258230 TGAACAGAAATTGCACTTCCATAG 57.742 37.500 4.46 0.00 0.00 2.23
2980 5270 4.998671 TTGAACAGAAATTGCACTTCCA 57.001 36.364 4.46 0.00 0.00 3.53
2981 5271 6.849588 AATTTGAACAGAAATTGCACTTCC 57.150 33.333 4.46 0.00 34.84 3.46
2982 5272 8.981647 ACATAATTTGAACAGAAATTGCACTTC 58.018 29.630 0.00 0.00 36.44 3.01
3024 5314 9.758651 GCCCTTAAAGAGAAAAATAGAAAACAA 57.241 29.630 0.00 0.00 0.00 2.83
3034 5324 9.396022 CACTGATATAGCCCTTAAAGAGAAAAA 57.604 33.333 0.00 0.00 0.00 1.94
3035 5325 8.768397 TCACTGATATAGCCCTTAAAGAGAAAA 58.232 33.333 0.00 0.00 0.00 2.29
3036 5326 8.204836 GTCACTGATATAGCCCTTAAAGAGAAA 58.795 37.037 0.00 0.00 0.00 2.52
3037 5327 7.344612 TGTCACTGATATAGCCCTTAAAGAGAA 59.655 37.037 0.00 0.00 0.00 2.87
3038 5328 6.839134 TGTCACTGATATAGCCCTTAAAGAGA 59.161 38.462 0.00 0.00 0.00 3.10
3039 5329 6.926272 GTGTCACTGATATAGCCCTTAAAGAG 59.074 42.308 0.00 0.00 0.00 2.85
3040 5330 6.611642 AGTGTCACTGATATAGCCCTTAAAGA 59.388 38.462 4.21 0.00 0.00 2.52
3041 5331 6.821388 AGTGTCACTGATATAGCCCTTAAAG 58.179 40.000 4.21 0.00 0.00 1.85
3042 5332 6.808321 AGTGTCACTGATATAGCCCTTAAA 57.192 37.500 4.21 0.00 0.00 1.52
3238 5530 9.467258 CATGGCATTGTTATTACCATTAAAGAG 57.533 33.333 0.00 0.00 39.08 2.85
3246 5538 4.887071 GGAGTCATGGCATTGTTATTACCA 59.113 41.667 0.00 0.00 34.28 3.25
3266 5558 7.609532 AGTGATGTTTTCTAAGGAAGAATGGAG 59.390 37.037 0.00 0.00 43.75 3.86
3302 5594 7.873739 AAATAGTGCAATTTTTACACTCTGC 57.126 32.000 0.63 0.00 43.36 4.26
3358 5650 6.890558 ACATACAAATTTGCACTGAAATTGC 58.109 32.000 18.12 0.00 36.01 3.56
3384 5676 7.712204 TTACCCTTGAAGAAGAAACAAAAGT 57.288 32.000 0.00 0.00 0.00 2.66
3385 5677 9.678941 GTATTACCCTTGAAGAAGAAACAAAAG 57.321 33.333 0.00 0.00 0.00 2.27
3390 5682 7.754851 TTGGTATTACCCTTGAAGAAGAAAC 57.245 36.000 10.37 0.00 37.50 2.78
3391 5683 7.093945 GCATTGGTATTACCCTTGAAGAAGAAA 60.094 37.037 10.37 0.00 37.50 2.52
3392 5684 6.377146 GCATTGGTATTACCCTTGAAGAAGAA 59.623 38.462 10.37 0.00 37.50 2.52
3393 5685 5.885912 GCATTGGTATTACCCTTGAAGAAGA 59.114 40.000 10.37 0.00 37.50 2.87
3394 5686 5.067805 GGCATTGGTATTACCCTTGAAGAAG 59.932 44.000 10.37 0.00 37.50 2.85
3395 5687 4.953579 GGCATTGGTATTACCCTTGAAGAA 59.046 41.667 10.37 0.00 37.50 2.52
3473 5769 7.984617 GGCATTATTTTACCCATAAAGAAAGCA 59.015 33.333 0.00 0.00 30.73 3.91
3762 6061 8.155923 GCTTGCACGTTGAGAAAAATAATTTAG 58.844 33.333 0.00 0.00 0.00 1.85
3798 6097 3.550950 TTTCGTGTATGTTGCATGGTG 57.449 42.857 0.00 0.00 0.00 4.17
3811 6110 3.485463 TCTGATGGGTCTTTTTCGTGT 57.515 42.857 0.00 0.00 0.00 4.49
3815 6114 5.712152 ACATGTTCTGATGGGTCTTTTTC 57.288 39.130 0.00 0.00 0.00 2.29
3821 6122 5.065218 GTGTGATTACATGTTCTGATGGGTC 59.935 44.000 2.30 0.00 39.39 4.46
3823 6124 4.943093 TGTGTGATTACATGTTCTGATGGG 59.057 41.667 2.30 0.00 39.39 4.00
3837 6138 6.764085 CGTGGGGTTTTCTATATGTGTGATTA 59.236 38.462 0.00 0.00 0.00 1.75
3885 6186 5.316770 GCACGTTGTTGCAAAAATGTTTTA 58.683 33.333 22.10 0.00 42.49 1.52
3897 6198 0.168128 GATACCCTGCACGTTGTTGC 59.832 55.000 0.00 0.00 43.31 4.17
3918 6219 5.454062 CCATGGGGTTTTGATGGTATTAGA 58.546 41.667 2.85 0.00 33.26 2.10
3936 6237 4.458397 ACTAGTCATCAATTGAGCCATGG 58.542 43.478 14.54 7.63 34.17 3.66
3939 6240 3.118261 GGGACTAGTCATCAATTGAGCCA 60.118 47.826 23.91 0.00 34.17 4.75
3940 6241 3.471680 GGGACTAGTCATCAATTGAGCC 58.528 50.000 23.91 8.29 34.17 4.70
3943 6244 3.455910 CAGGGGGACTAGTCATCAATTGA 59.544 47.826 23.91 11.26 0.00 2.57
3945 6246 3.456277 GTCAGGGGGACTAGTCATCAATT 59.544 47.826 23.91 2.01 43.46 2.32
3947 6248 2.467880 GTCAGGGGGACTAGTCATCAA 58.532 52.381 23.91 1.89 43.46 2.57
3949 6250 1.062810 AGGTCAGGGGGACTAGTCATC 60.063 57.143 23.91 14.73 46.16 2.92
3950 6251 1.019650 AGGTCAGGGGGACTAGTCAT 58.980 55.000 23.91 4.41 46.16 3.06
3951 6252 1.690010 TAGGTCAGGGGGACTAGTCA 58.310 55.000 23.91 0.00 46.16 3.41
3952 6253 3.331718 AATAGGTCAGGGGGACTAGTC 57.668 52.381 14.87 14.87 46.16 2.59
3953 6254 3.275228 AGAAATAGGTCAGGGGGACTAGT 59.725 47.826 0.00 0.00 46.16 2.57
3954 6255 3.898741 GAGAAATAGGTCAGGGGGACTAG 59.101 52.174 0.00 0.00 46.16 2.57
3955 6256 3.536434 AGAGAAATAGGTCAGGGGGACTA 59.464 47.826 0.00 0.00 46.16 2.59
3956 6257 2.319438 AGAGAAATAGGTCAGGGGGACT 59.681 50.000 0.00 0.00 46.16 3.85
3957 6258 2.701423 GAGAGAAATAGGTCAGGGGGAC 59.299 54.545 0.00 0.00 46.20 4.46
3958 6259 2.317900 TGAGAGAAATAGGTCAGGGGGA 59.682 50.000 0.00 0.00 0.00 4.81
3964 6265 5.682234 TTCATGCTGAGAGAAATAGGTCA 57.318 39.130 0.00 0.00 0.00 4.02
3965 6266 5.007528 GCTTTCATGCTGAGAGAAATAGGTC 59.992 44.000 7.56 0.00 30.88 3.85
3980 6283 2.098117 GTGAGGTGGTATGCTTTCATGC 59.902 50.000 0.00 0.00 35.00 4.06
3985 6288 2.726821 CATGGTGAGGTGGTATGCTTT 58.273 47.619 0.00 0.00 0.00 3.51
4011 6314 1.340889 GCAGTGGGTCTTTTTCATGCA 59.659 47.619 0.00 0.00 32.79 3.96
4029 6332 6.571574 CACTGTGTGTGGTTGCATATTGCA 62.572 45.833 0.00 0.00 46.31 4.08
4030 6333 2.030007 ACTGTGTGTGGTTGCATATTGC 60.030 45.455 0.00 0.00 45.29 3.56
4034 6337 2.629336 TCACTGTGTGTGGTTGCATA 57.371 45.000 7.79 0.00 46.20 3.14
4051 6354 2.315176 CATGTTCAGGTGGGGTTTTCA 58.685 47.619 0.00 0.00 0.00 2.69
4136 6442 9.956720 CTTAGTTGATTTTGAGTGACAGAAAAT 57.043 29.630 4.78 4.78 0.00 1.82
4141 6447 9.226345 GAAAACTTAGTTGATTTTGAGTGACAG 57.774 33.333 0.00 0.00 0.00 3.51
4222 6951 1.005450 TCCTAATTTGGGCCAGTCACC 59.995 52.381 6.23 0.00 0.00 4.02
4225 6954 4.023291 TGAAATCCTAATTTGGGCCAGTC 58.977 43.478 6.23 0.00 35.21 3.51
4235 6964 6.773976 TTTGGATCGCTTGAAATCCTAATT 57.226 33.333 3.30 0.00 41.74 1.40
4238 6967 5.007034 TGTTTTGGATCGCTTGAAATCCTA 58.993 37.500 3.30 0.00 41.74 2.94
4241 6970 5.634859 ACAATGTTTTGGATCGCTTGAAATC 59.365 36.000 0.00 0.00 37.15 2.17
4278 7022 9.838339 TTGATAGAAAATTTCCTACAGATCCTC 57.162 33.333 1.57 0.00 0.00 3.71
4322 7066 6.531948 ACAGTATGCTCGACAATTTAGAAGAC 59.468 38.462 0.00 0.00 42.53 3.01
4327 7071 6.408858 ACAACAGTATGCTCGACAATTTAG 57.591 37.500 0.00 0.00 42.53 1.85
4329 7073 4.154195 GGACAACAGTATGCTCGACAATTT 59.846 41.667 0.00 0.00 42.53 1.82
4337 7081 1.476891 TCTCGGGACAACAGTATGCTC 59.523 52.381 0.00 0.00 42.53 4.26
4341 7085 3.070446 TGTTGTTCTCGGGACAACAGTAT 59.930 43.478 21.71 0.00 0.00 2.12
4375 7119 6.552008 TGGGATTGACTCATTTCCTTAAGTT 58.448 36.000 0.97 0.00 0.00 2.66
4403 7147 9.554395 TGCCTTGTTATCGATGATATCTTTTTA 57.446 29.630 8.54 0.00 0.00 1.52
4405 7149 8.627208 ATGCCTTGTTATCGATGATATCTTTT 57.373 30.769 8.54 0.00 0.00 2.27
4406 7150 8.099537 AGATGCCTTGTTATCGATGATATCTTT 58.900 33.333 8.54 0.00 0.00 2.52
4407 7151 7.619050 AGATGCCTTGTTATCGATGATATCTT 58.381 34.615 8.54 0.00 0.00 2.40
4408 7152 7.180322 AGATGCCTTGTTATCGATGATATCT 57.820 36.000 8.54 3.55 0.00 1.98
4409 7153 9.190858 GATAGATGCCTTGTTATCGATGATATC 57.809 37.037 8.54 0.00 0.00 1.63
4411 7155 7.148069 ACGATAGATGCCTTGTTATCGATGATA 60.148 37.037 8.54 0.00 44.53 2.15
4412 7156 6.038985 CGATAGATGCCTTGTTATCGATGAT 58.961 40.000 8.54 0.00 44.53 2.45
4413 7157 5.048013 ACGATAGATGCCTTGTTATCGATGA 60.048 40.000 8.54 0.00 44.53 2.92
4414 7158 5.164233 ACGATAGATGCCTTGTTATCGATG 58.836 41.667 8.54 0.00 44.53 3.84
4415 7159 5.392767 ACGATAGATGCCTTGTTATCGAT 57.607 39.130 16.66 2.16 44.53 3.59
4416 7160 4.848562 ACGATAGATGCCTTGTTATCGA 57.151 40.909 16.66 0.00 44.53 3.59
4417 7161 4.982295 TGAACGATAGATGCCTTGTTATCG 59.018 41.667 10.21 10.21 46.16 2.92
4419 7163 7.255242 CCATTTGAACGATAGATGCCTTGTTAT 60.255 37.037 0.00 0.00 41.38 1.89
4420 7164 6.038161 CCATTTGAACGATAGATGCCTTGTTA 59.962 38.462 0.00 0.00 41.38 2.41
4422 7166 4.336433 CCATTTGAACGATAGATGCCTTGT 59.664 41.667 0.00 0.00 41.38 3.16
4423 7167 4.336433 ACCATTTGAACGATAGATGCCTTG 59.664 41.667 0.00 0.00 41.38 3.61
4425 7169 4.156455 ACCATTTGAACGATAGATGCCT 57.844 40.909 0.00 0.00 41.38 4.75
4426 7170 4.335315 TGAACCATTTGAACGATAGATGCC 59.665 41.667 0.00 0.00 41.38 4.40
4428 7172 6.313658 TCTGTGAACCATTTGAACGATAGATG 59.686 38.462 0.00 0.00 41.38 2.90
4429 7173 6.313905 GTCTGTGAACCATTTGAACGATAGAT 59.686 38.462 0.00 0.00 41.38 1.98
4430 7174 5.637810 GTCTGTGAACCATTTGAACGATAGA 59.362 40.000 0.00 0.00 41.38 1.98
4436 7186 4.261197 GGTCAGTCTGTGAACCATTTGAAC 60.261 45.833 0.00 0.00 36.81 3.18
4445 7195 5.531287 ACAAAAATAGGGTCAGTCTGTGAAC 59.469 40.000 0.00 0.00 42.92 3.18
4452 7202 4.636206 CCTGCTACAAAAATAGGGTCAGTC 59.364 45.833 0.00 0.00 0.00 3.51
4457 7207 2.923629 TCCCCTGCTACAAAAATAGGGT 59.076 45.455 0.00 0.00 45.36 4.34
4459 7209 2.943033 CGTCCCCTGCTACAAAAATAGG 59.057 50.000 0.00 0.00 0.00 2.57
4464 7214 0.250553 CACCGTCCCCTGCTACAAAA 60.251 55.000 0.00 0.00 0.00 2.44
4470 7220 3.083997 GGATCACCGTCCCCTGCT 61.084 66.667 0.00 0.00 31.82 4.24
4516 7266 1.750399 CATCTTCTTGGCCCCGGTG 60.750 63.158 0.00 0.00 0.00 4.94
4642 7392 2.512515 GCCTCGAAGAAGCCGCAT 60.513 61.111 0.00 0.00 38.18 4.73
4798 7548 1.445410 AAAGCTCGTCGCATGCGTA 60.445 52.632 36.50 21.96 42.61 4.42
4804 7554 1.887242 AGCAACAAAGCTCGTCGCA 60.887 52.632 2.41 0.00 42.18 5.10
4815 7565 1.143684 AGGAAGGAGCAAGAGCAACAA 59.856 47.619 0.00 0.00 45.49 2.83
4884 7635 1.007038 GTTACCGTCACGACCTGCA 60.007 57.895 0.00 0.00 0.00 4.41
4900 7651 3.001406 CCTCCCCGGAACCTCGTT 61.001 66.667 0.73 0.00 33.16 3.85
5004 7755 1.152652 ATCACCTCCTCGATCCGCT 60.153 57.895 0.00 0.00 0.00 5.52
5252 8003 1.803366 GCCTCGTTCCGTATCCCGAT 61.803 60.000 0.00 0.00 39.56 4.18
5651 8405 3.616821 CGGATCATTTCTGCACGAAGTTA 59.383 43.478 0.00 0.00 41.61 2.24
5671 8425 2.433868 TCGACACCTTCTTTTCTCGG 57.566 50.000 0.00 0.00 0.00 4.63
5804 8596 9.107177 AGATATTTGTCAGAATTTGCTCTACTG 57.893 33.333 0.00 0.00 0.00 2.74
5876 8668 2.037251 AGTCGATGCTGTTAGTGTTGGT 59.963 45.455 0.00 0.00 0.00 3.67
5939 8731 6.053632 TGCTCCTTGATTTGATAGTCTTCA 57.946 37.500 0.00 0.00 0.00 3.02
5960 8777 1.512734 CGTGATCTTTGCGCCTTGC 60.513 57.895 4.18 0.00 46.70 4.01
6046 8865 1.541310 CCACTGAGTTGGCCGAGGTA 61.541 60.000 0.00 0.00 0.00 3.08
6116 8937 1.974343 AGCTGTCTCCTCGTCGCTT 60.974 57.895 0.00 0.00 0.00 4.68
6308 9146 3.997064 CTCGCCTCCTCCGCAGTTG 62.997 68.421 0.00 0.00 0.00 3.16
6337 9175 1.056660 TTCCCTCCGGCATTATCTCC 58.943 55.000 0.00 0.00 0.00 3.71
6369 9207 4.201773 TGTTCATCAGCTATAAAAACGCGG 60.202 41.667 12.47 0.00 0.00 6.46
6376 9214 6.798427 ACTCCTCTGTTCATCAGCTATAAA 57.202 37.500 0.00 0.00 43.32 1.40
6387 9228 1.814429 TTCCCCAACTCCTCTGTTCA 58.186 50.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.