Multiple sequence alignment - TraesCS3B01G283700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G283700 chr3B 100.000 5243 0 0 323 5565 454667456 454672698 0.000000e+00 9683.0
1 TraesCS3B01G283700 chr3B 96.694 121 2 1 4240 4358 205166481 205166361 3.400000e-47 200.0
2 TraesCS3B01G283700 chr3B 100.000 81 0 0 1 81 454667134 454667214 3.470000e-32 150.0
3 TraesCS3B01G283700 chr3B 96.970 33 1 0 1705 1737 454668806 454668838 7.790000e-04 56.5
4 TraesCS3B01G283700 chr3B 96.970 33 1 0 1673 1705 454668838 454668870 7.790000e-04 56.5
5 TraesCS3B01G283700 chr4B 96.103 3977 76 34 323 4251 24015820 24011875 0.000000e+00 6412.0
6 TraesCS3B01G283700 chr4B 96.409 557 15 5 4354 4907 24011877 24011323 0.000000e+00 913.0
7 TraesCS3B01G283700 chr4B 97.531 81 2 0 1 81 24016231 24016151 7.520000e-29 139.0
8 TraesCS3B01G283700 chr4D 87.137 2511 163 65 883 3338 13247532 13245127 0.000000e+00 2700.0
9 TraesCS3B01G283700 chr4D 90.291 103 10 0 3476 3578 13244687 13244585 9.720000e-28 135.0
10 TraesCS3B01G283700 chr4A 91.332 1246 64 24 862 2089 589011415 589012634 0.000000e+00 1663.0
11 TraesCS3B01G283700 chr4A 89.325 815 59 15 4397 5201 589015179 589015975 0.000000e+00 998.0
12 TraesCS3B01G283700 chr4A 94.964 417 19 2 3215 3630 589013930 589014345 0.000000e+00 652.0
13 TraesCS3B01G283700 chr4A 95.674 393 14 3 2086 2476 589012656 589013047 3.660000e-176 628.0
14 TraesCS3B01G283700 chr4A 94.906 373 17 2 2468 2840 589013123 589013493 2.890000e-162 582.0
15 TraesCS3B01G283700 chr4A 88.402 388 31 6 3703 4083 589014503 589014883 6.570000e-124 455.0
16 TraesCS3B01G283700 chr4A 91.566 332 21 1 2839 3170 589013608 589013932 8.500000e-123 451.0
17 TraesCS3B01G283700 chr2D 89.394 396 34 4 4993 5382 640367309 640367702 5.010000e-135 492.0
18 TraesCS3B01G283700 chr2D 96.639 119 2 2 4244 4362 154110786 154110670 4.400000e-46 196.0
19 TraesCS3B01G283700 chr5B 89.744 390 31 6 4999 5382 477558028 477557642 1.800000e-134 490.0
20 TraesCS3B01G283700 chr6D 89.637 386 37 3 4999 5382 270053339 270052955 6.480000e-134 488.0
21 TraesCS3B01G283700 chr6D 88.718 390 34 6 4999 5382 5732334 5731949 8.440000e-128 468.0
22 TraesCS3B01G283700 chr5A 89.231 390 34 4 4999 5382 616635839 616635452 1.080000e-131 481.0
23 TraesCS3B01G283700 chr5A 88.325 394 38 4 4992 5379 428152025 428152416 3.040000e-127 466.0
24 TraesCS3B01G283700 chr2A 88.918 388 41 2 4996 5382 469791504 469791890 1.400000e-130 477.0
25 TraesCS3B01G283700 chr3A 87.657 397 39 9 4988 5382 38390968 38391356 2.360000e-123 453.0
26 TraesCS3B01G283700 chr3A 95.902 122 5 0 4242 4363 564540098 564540219 1.220000e-46 198.0
27 TraesCS3B01G283700 chr3A 92.000 75 6 0 5410 5484 703212196 703212122 7.620000e-19 106.0
28 TraesCS3B01G283700 chr3D 98.291 117 1 1 4241 4356 431450654 431450770 2.630000e-48 204.0
29 TraesCS3B01G283700 chr7B 100.000 109 0 0 4250 4358 547472478 547472370 9.450000e-48 202.0
30 TraesCS3B01G283700 chr6A 98.261 115 1 1 4242 4356 509054409 509054296 3.400000e-47 200.0
31 TraesCS3B01G283700 chr2B 98.261 115 1 1 4243 4357 5665566 5665453 3.400000e-47 200.0
32 TraesCS3B01G283700 chr7D 95.935 123 3 2 4235 4356 479651840 479651719 1.220000e-46 198.0
33 TraesCS3B01G283700 chr7A 96.667 120 2 2 4245 4363 609519014 609518896 1.220000e-46 198.0
34 TraesCS3B01G283700 chr7A 79.355 155 19 8 5410 5563 730905631 730905773 4.590000e-16 97.1
35 TraesCS3B01G283700 chr7A 82.278 79 9 1 5489 5562 637297637 637297559 4.650000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G283700 chr3B 454667134 454672698 5564 False 2486.500000 9683 98.485000 1 5565 4 chr3B.!!$F1 5564
1 TraesCS3B01G283700 chr4B 24011323 24016231 4908 True 2488.000000 6412 96.681000 1 4907 3 chr4B.!!$R1 4906
2 TraesCS3B01G283700 chr4D 13244585 13247532 2947 True 1417.500000 2700 88.714000 883 3578 2 chr4D.!!$R1 2695
3 TraesCS3B01G283700 chr4A 589011415 589015975 4560 False 775.571429 1663 92.309857 862 5201 7 chr4A.!!$F1 4339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 532 1.001641 ACCATCACCCAAGAGCAGC 60.002 57.895 0.00 0.00 0.0 5.25 F
1654 1771 0.035820 TATGTGCACTTCGAACCCCC 60.036 55.000 19.41 0.00 0.0 5.40 F
3184 3548 0.827507 GGCTTCCAGGGAGTTTTGCA 60.828 55.000 0.00 0.00 0.0 4.08 F
4265 5118 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2190 2336 0.912006 AGGTTCCCTCTTCCCTCTGC 60.912 60.0 0.0 0.0 0.00 4.26 R
3247 3611 0.685785 TTTTGCAAGTGGGACTGCCA 60.686 50.0 0.0 0.0 35.15 4.92 R
4344 5197 0.186386 CTCCATCCTACTCCCTCCGT 59.814 60.0 0.0 0.0 0.00 4.69 R
5477 6355 0.177836 TGTACCTGGATCATGCCGTG 59.822 55.0 0.0 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
389 479 1.531423 CTCTGCCTGCTGTTGTTCAT 58.469 50.000 0.00 0.00 0.00 2.57
400 490 2.668457 CTGTTGTTCATACTCGTCCTGC 59.332 50.000 0.00 0.00 0.00 4.85
442 532 1.001641 ACCATCACCCAAGAGCAGC 60.002 57.895 0.00 0.00 0.00 5.25
530 620 4.637489 CGCTCTCCGGGATCTGCG 62.637 72.222 18.68 18.68 37.57 5.18
593 683 2.280524 CAACTCGGTTGGTCGCCA 60.281 61.111 8.40 0.00 39.56 5.69
727 817 1.442769 GAACGATTCCAGAAGCTGCA 58.557 50.000 1.02 0.00 0.00 4.41
763 853 1.448985 GCCAAGATTCGTGCTACCAA 58.551 50.000 0.00 0.00 0.00 3.67
767 857 3.065371 CCAAGATTCGTGCTACCAAATCC 59.935 47.826 0.00 0.00 0.00 3.01
783 873 1.296056 ATCCGACGGTCAAAAAGGCG 61.296 55.000 14.79 0.00 0.00 5.52
1515 1622 2.989571 AGAGGTATGGGATTGGGATTCC 59.010 50.000 0.00 0.00 0.00 3.01
1525 1632 4.266714 GGATTGGGATTCCGTCACTTTTA 58.733 43.478 0.00 0.00 35.24 1.52
1526 1633 4.095932 GGATTGGGATTCCGTCACTTTTAC 59.904 45.833 0.00 0.00 35.24 2.01
1536 1644 2.676076 GTCACTTTTACCGTTCCGCTA 58.324 47.619 0.00 0.00 0.00 4.26
1567 1675 2.468532 CCTCGTTTCGTTTCGCCG 59.531 61.111 0.00 0.00 0.00 6.46
1591 1699 4.202182 TGAATTACATAGCGGGTACAGACC 60.202 45.833 0.00 0.00 46.13 3.85
1653 1770 1.940613 GATATGTGCACTTCGAACCCC 59.059 52.381 19.41 0.00 0.00 4.95
1654 1771 0.035820 TATGTGCACTTCGAACCCCC 60.036 55.000 19.41 0.00 0.00 5.40
1672 1789 3.053619 CCCCCAATAGCCAGTTTACTCTT 60.054 47.826 0.00 0.00 0.00 2.85
1673 1790 4.165372 CCCCCAATAGCCAGTTTACTCTTA 59.835 45.833 0.00 0.00 0.00 2.10
1674 1791 5.368989 CCCCAATAGCCAGTTTACTCTTAG 58.631 45.833 0.00 0.00 0.00 2.18
1675 1792 4.816925 CCCAATAGCCAGTTTACTCTTAGC 59.183 45.833 0.00 0.00 0.00 3.09
1676 1793 5.428253 CCAATAGCCAGTTTACTCTTAGCA 58.572 41.667 0.00 0.00 0.00 3.49
1677 1794 6.058183 CCAATAGCCAGTTTACTCTTAGCAT 58.942 40.000 0.00 0.00 0.00 3.79
1678 1795 6.543831 CCAATAGCCAGTTTACTCTTAGCATT 59.456 38.462 0.00 0.00 0.00 3.56
1679 1796 7.067494 CCAATAGCCAGTTTACTCTTAGCATTT 59.933 37.037 0.00 0.00 0.00 2.32
1680 1797 9.109393 CAATAGCCAGTTTACTCTTAGCATTTA 57.891 33.333 0.00 0.00 0.00 1.40
1681 1798 9.681062 AATAGCCAGTTTACTCTTAGCATTTAA 57.319 29.630 0.00 0.00 0.00 1.52
1683 1800 7.394816 AGCCAGTTTACTCTTAGCATTTAAGA 58.605 34.615 0.00 0.00 33.10 2.10
1684 1801 8.049721 AGCCAGTTTACTCTTAGCATTTAAGAT 58.950 33.333 0.00 0.00 33.61 2.40
1685 1802 8.125448 GCCAGTTTACTCTTAGCATTTAAGATG 58.875 37.037 0.00 0.00 33.61 2.90
1686 1803 9.167311 CCAGTTTACTCTTAGCATTTAAGATGT 57.833 33.333 0.00 2.30 33.61 3.06
1699 1816 8.742777 AGCATTTAAGATGTTTCATTCTTAGCA 58.257 29.630 0.00 0.00 36.20 3.49
1700 1817 9.525409 GCATTTAAGATGTTTCATTCTTAGCAT 57.475 29.630 0.00 0.00 36.20 3.79
1703 1820 8.915871 TTAAGATGTTTCATTCTTAGCATTGC 57.084 30.769 0.00 0.00 36.20 3.56
1704 1821 6.770746 AGATGTTTCATTCTTAGCATTGCT 57.229 33.333 16.63 16.63 43.41 3.91
1705 1822 7.870509 AGATGTTTCATTCTTAGCATTGCTA 57.129 32.000 14.33 14.33 40.44 3.49
1706 1823 7.928103 AGATGTTTCATTCTTAGCATTGCTAG 58.072 34.615 17.31 12.13 42.34 3.42
1707 1824 7.772292 AGATGTTTCATTCTTAGCATTGCTAGA 59.228 33.333 17.31 13.94 42.34 2.43
1708 1825 7.686438 TGTTTCATTCTTAGCATTGCTAGAA 57.314 32.000 21.81 21.81 42.34 2.10
1709 1826 8.284945 TGTTTCATTCTTAGCATTGCTAGAAT 57.715 30.769 23.31 23.31 42.34 2.40
1710 1827 8.742777 TGTTTCATTCTTAGCATTGCTAGAATT 58.257 29.630 24.88 15.60 42.34 2.17
1711 1828 9.578439 GTTTCATTCTTAGCATTGCTAGAATTT 57.422 29.630 24.88 13.91 42.34 1.82
1766 1883 4.879545 TGTTCTGGATTATTTTAGGACGGC 59.120 41.667 0.00 0.00 0.00 5.68
2091 2237 3.056107 TCCTAACCCGAAGTCATGTCAAG 60.056 47.826 0.00 0.00 0.00 3.02
2190 2336 8.575649 AGGGTTCATTTGTTAAGTAATGGTAG 57.424 34.615 8.74 0.00 33.58 3.18
2232 2378 7.174426 ACCTCTTTCTTTACTTAATCCCGTTTG 59.826 37.037 0.00 0.00 0.00 2.93
2326 2480 7.775053 AAAAGACACTGGATTGCCTTAATAA 57.225 32.000 0.00 0.00 34.31 1.40
2347 2501 2.765699 ACACCAACAGTTTGCAATCCTT 59.234 40.909 0.00 0.00 0.00 3.36
2533 2776 6.265649 TGTTTCTGCTCTCTACCATATCTACC 59.734 42.308 0.00 0.00 0.00 3.18
2678 2921 3.118261 AGTGAGTCAACAACATCCACTGT 60.118 43.478 0.00 0.00 40.84 3.55
2934 3298 4.618227 GCAAGTCTGACCAAACAACACTTT 60.618 41.667 3.76 0.00 0.00 2.66
3184 3548 0.827507 GGCTTCCAGGGAGTTTTGCA 60.828 55.000 0.00 0.00 0.00 4.08
3358 3984 1.653151 GGAACATTGTAGCGAGGACC 58.347 55.000 0.00 0.00 0.00 4.46
4251 5104 4.217497 GCGTCGTGAGGTAGAATATGTAC 58.783 47.826 0.00 0.00 0.00 2.90
4253 5106 5.677936 CGTCGTGAGGTAGAATATGTACTC 58.322 45.833 0.00 0.00 0.00 2.59
4254 5107 5.333952 CGTCGTGAGGTAGAATATGTACTCC 60.334 48.000 0.00 0.00 0.00 3.85
4255 5108 5.048852 GTCGTGAGGTAGAATATGTACTCCC 60.049 48.000 0.00 0.00 0.00 4.30
4257 5110 5.181622 CGTGAGGTAGAATATGTACTCCCTC 59.818 48.000 0.00 0.00 38.94 4.30
4258 5111 5.477637 GTGAGGTAGAATATGTACTCCCTCC 59.522 48.000 0.00 0.00 38.11 4.30
4259 5112 4.664392 AGGTAGAATATGTACTCCCTCCG 58.336 47.826 0.00 0.00 0.00 4.63
4260 5113 4.106019 AGGTAGAATATGTACTCCCTCCGT 59.894 45.833 0.00 0.00 0.00 4.69
4261 5114 4.831710 GGTAGAATATGTACTCCCTCCGTT 59.168 45.833 0.00 0.00 0.00 4.44
4262 5115 5.048154 GGTAGAATATGTACTCCCTCCGTTC 60.048 48.000 0.00 0.00 0.00 3.95
4263 5116 3.568853 AGAATATGTACTCCCTCCGTTCG 59.431 47.826 0.00 0.00 0.00 3.95
4265 5118 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
4266 5119 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
4267 5120 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
4268 5121 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
4269 5122 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4270 5123 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4271 5124 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4272 5125 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4273 5126 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4274 5127 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4275 5128 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4276 5129 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
4277 5130 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
4278 5131 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
4279 5132 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
4280 5133 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
4281 5134 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
4282 5135 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
4283 5136 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
4284 5137 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
4285 5138 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
4286 5139 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
4287 5140 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
4288 5141 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
4289 5142 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
4290 5143 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
4291 5144 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
4292 5145 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
4293 5146 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
4294 5147 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
4295 5148 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
4296 5149 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
4297 5150 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
4298 5151 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
4299 5152 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
4300 5153 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
4301 5154 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
4302 5155 7.815068 GCAGAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
4303 5156 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
4327 5180 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
4328 5181 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
4329 5182 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
4330 5183 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
4331 5184 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
4332 5185 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
4333 5186 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
4334 5187 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
4335 5188 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
4336 5189 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
4337 5190 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
4338 5191 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
4339 5192 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
4340 5193 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
4341 5194 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
4342 5195 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
4343 5196 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
4344 5197 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
4345 5198 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
4346 5199 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
4347 5200 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
4348 5201 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
4349 5202 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
4350 5203 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4351 5204 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4352 5205 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
4363 5216 0.186386 ACGGAGGGAGTAGGATGGAG 59.814 60.000 0.00 0.00 0.00 3.86
4634 5510 3.603965 TCCTATTGTGGGGTTGTTTGT 57.396 42.857 0.00 0.00 0.00 2.83
4840 5717 7.375834 TGTATGTAGTTCATGTCTTCGTTTCT 58.624 34.615 0.00 0.00 37.91 2.52
4906 5783 4.824537 TCTGGTGCTGCATTTGTAAGTTTA 59.175 37.500 5.27 0.00 0.00 2.01
4907 5784 5.476599 TCTGGTGCTGCATTTGTAAGTTTAT 59.523 36.000 5.27 0.00 0.00 1.40
4947 5824 2.203015 GCCGCCGGCTGATCTTTA 60.203 61.111 26.68 0.00 46.69 1.85
4949 5826 0.320421 GCCGCCGGCTGATCTTTATA 60.320 55.000 26.68 0.00 46.69 0.98
4950 5827 1.876416 GCCGCCGGCTGATCTTTATAA 60.876 52.381 26.68 0.00 46.69 0.98
4997 5874 6.650372 CAGTTAGATTTCACCTATTAAGCGC 58.350 40.000 0.00 0.00 0.00 5.92
5003 5880 3.691049 TCACCTATTAAGCGCAAATGC 57.309 42.857 11.47 0.00 37.78 3.56
5012 5889 0.321021 AGCGCAAATGCCAAATGGAA 59.679 45.000 11.47 0.00 37.91 3.53
5016 5893 2.502295 GCAAATGCCAAATGGAAACCA 58.498 42.857 2.98 0.00 37.39 3.67
5021 5898 1.767681 TGCCAAATGGAAACCAAGCTT 59.232 42.857 2.98 0.00 36.95 3.74
5031 5908 0.613012 AACCAAGCTTCATGGAGGCC 60.613 55.000 9.96 0.00 40.56 5.19
5039 5916 4.356436 AGCTTCATGGAGGCCTTTATTTT 58.644 39.130 6.77 0.00 35.17 1.82
5041 5918 5.595952 AGCTTCATGGAGGCCTTTATTTTAG 59.404 40.000 6.77 0.77 35.17 1.85
5043 5920 6.266330 GCTTCATGGAGGCCTTTATTTTAGAT 59.734 38.462 6.77 0.00 0.00 1.98
5134 6011 7.410800 AATGTACATGTGTGCAAATTTTCAG 57.589 32.000 9.63 0.00 43.49 3.02
5138 6015 3.077229 TGTGTGCAAATTTTCAGGTCG 57.923 42.857 0.00 0.00 0.00 4.79
5198 6076 7.703058 ATATGGGGCTTTTTAGCATATGTAC 57.297 36.000 4.29 0.00 36.33 2.90
5199 6077 5.124036 TGGGGCTTTTTAGCATATGTACT 57.876 39.130 4.29 0.00 36.33 2.73
5200 6078 4.887071 TGGGGCTTTTTAGCATATGTACTG 59.113 41.667 4.29 0.00 36.33 2.74
5201 6079 4.887655 GGGGCTTTTTAGCATATGTACTGT 59.112 41.667 4.29 0.00 36.33 3.55
5202 6080 5.359860 GGGGCTTTTTAGCATATGTACTGTT 59.640 40.000 4.29 0.00 36.33 3.16
5203 6081 6.459710 GGGGCTTTTTAGCATATGTACTGTTC 60.460 42.308 4.29 0.00 36.33 3.18
5204 6082 6.094881 GGGCTTTTTAGCATATGTACTGTTCA 59.905 38.462 4.29 0.00 36.33 3.18
5205 6083 7.201821 GGGCTTTTTAGCATATGTACTGTTCAT 60.202 37.037 4.29 5.26 36.33 2.57
5206 6084 7.857885 GGCTTTTTAGCATATGTACTGTTCATC 59.142 37.037 4.29 0.00 36.33 2.92
5207 6085 8.616076 GCTTTTTAGCATATGTACTGTTCATCT 58.384 33.333 4.29 0.00 34.41 2.90
5209 6087 9.890629 TTTTTAGCATATGTACTGTTCATCTCT 57.109 29.630 4.29 3.11 0.00 3.10
5214 6092 8.700051 AGCATATGTACTGTTCATCTCTAAAGT 58.300 33.333 4.29 0.00 0.00 2.66
5215 6093 8.759641 GCATATGTACTGTTCATCTCTAAAGTG 58.240 37.037 4.29 0.00 0.00 3.16
5216 6094 8.759641 CATATGTACTGTTCATCTCTAAAGTGC 58.240 37.037 3.04 0.00 0.00 4.40
5217 6095 6.096673 TGTACTGTTCATCTCTAAAGTGCA 57.903 37.500 0.00 0.00 0.00 4.57
5218 6096 6.701340 TGTACTGTTCATCTCTAAAGTGCAT 58.299 36.000 0.00 0.00 0.00 3.96
5219 6097 6.591448 TGTACTGTTCATCTCTAAAGTGCATG 59.409 38.462 0.00 0.00 0.00 4.06
5220 6098 5.798132 ACTGTTCATCTCTAAAGTGCATGA 58.202 37.500 0.00 0.00 0.00 3.07
5221 6099 6.413052 ACTGTTCATCTCTAAAGTGCATGAT 58.587 36.000 0.00 0.00 0.00 2.45
5222 6100 6.883217 ACTGTTCATCTCTAAAGTGCATGATT 59.117 34.615 0.00 0.00 0.00 2.57
5223 6101 7.392673 ACTGTTCATCTCTAAAGTGCATGATTT 59.607 33.333 0.00 0.00 0.00 2.17
5224 6102 8.114331 TGTTCATCTCTAAAGTGCATGATTTT 57.886 30.769 0.00 0.00 0.00 1.82
5225 6103 8.579006 TGTTCATCTCTAAAGTGCATGATTTTT 58.421 29.630 0.00 0.00 0.00 1.94
5242 6120 3.094386 TTTTTGTCCAGCTCGCAGT 57.906 47.368 0.00 0.00 0.00 4.40
5243 6121 1.388547 TTTTTGTCCAGCTCGCAGTT 58.611 45.000 0.00 0.00 0.00 3.16
5244 6122 1.388547 TTTTGTCCAGCTCGCAGTTT 58.611 45.000 0.00 0.00 0.00 2.66
5245 6123 2.248280 TTTGTCCAGCTCGCAGTTTA 57.752 45.000 0.00 0.00 0.00 2.01
5246 6124 2.248280 TTGTCCAGCTCGCAGTTTAA 57.752 45.000 0.00 0.00 0.00 1.52
5247 6125 1.795768 TGTCCAGCTCGCAGTTTAAG 58.204 50.000 0.00 0.00 0.00 1.85
5248 6126 1.079503 GTCCAGCTCGCAGTTTAAGG 58.920 55.000 0.00 0.00 0.00 2.69
5249 6127 0.685097 TCCAGCTCGCAGTTTAAGGT 59.315 50.000 0.00 0.00 0.00 3.50
5250 6128 1.897133 TCCAGCTCGCAGTTTAAGGTA 59.103 47.619 0.00 0.00 0.00 3.08
5251 6129 2.500098 TCCAGCTCGCAGTTTAAGGTAT 59.500 45.455 0.00 0.00 0.00 2.73
5252 6130 3.055385 TCCAGCTCGCAGTTTAAGGTATT 60.055 43.478 0.00 0.00 0.00 1.89
5253 6131 3.689649 CCAGCTCGCAGTTTAAGGTATTT 59.310 43.478 0.00 0.00 0.00 1.40
5254 6132 4.201822 CCAGCTCGCAGTTTAAGGTATTTC 60.202 45.833 0.00 0.00 0.00 2.17
5255 6133 4.391830 CAGCTCGCAGTTTAAGGTATTTCA 59.608 41.667 0.00 0.00 0.00 2.69
5256 6134 5.065218 CAGCTCGCAGTTTAAGGTATTTCAT 59.935 40.000 0.00 0.00 0.00 2.57
5257 6135 5.294552 AGCTCGCAGTTTAAGGTATTTCATC 59.705 40.000 0.00 0.00 0.00 2.92
5258 6136 5.504173 GCTCGCAGTTTAAGGTATTTCATCC 60.504 44.000 0.00 0.00 0.00 3.51
5259 6137 5.741011 TCGCAGTTTAAGGTATTTCATCCT 58.259 37.500 0.00 0.00 35.34 3.24
5260 6138 5.584649 TCGCAGTTTAAGGTATTTCATCCTG 59.415 40.000 0.00 0.00 33.97 3.86
5261 6139 5.584649 CGCAGTTTAAGGTATTTCATCCTGA 59.415 40.000 0.00 0.00 33.97 3.86
5262 6140 6.093495 CGCAGTTTAAGGTATTTCATCCTGAA 59.907 38.462 0.00 0.00 34.03 3.02
5277 6155 9.474920 TTTCATCCTGAAATTTTTCACACATAC 57.525 29.630 1.66 0.00 41.02 2.39
5278 6156 8.175925 TCATCCTGAAATTTTTCACACATACA 57.824 30.769 1.66 0.00 41.88 2.29
5279 6157 8.081633 TCATCCTGAAATTTTTCACACATACAC 58.918 33.333 1.66 0.00 41.88 2.90
5280 6158 7.581213 TCCTGAAATTTTTCACACATACACT 57.419 32.000 1.66 0.00 41.88 3.55
5281 6159 8.006298 TCCTGAAATTTTTCACACATACACTT 57.994 30.769 1.66 0.00 41.88 3.16
5282 6160 8.474025 TCCTGAAATTTTTCACACATACACTTT 58.526 29.630 1.66 0.00 41.88 2.66
5283 6161 9.743057 CCTGAAATTTTTCACACATACACTTTA 57.257 29.630 1.66 0.00 41.88 1.85
5288 6166 9.691362 AATTTTTCACACATACACTTTACATCC 57.309 29.630 0.00 0.00 0.00 3.51
5289 6167 8.458573 TTTTTCACACATACACTTTACATCCT 57.541 30.769 0.00 0.00 0.00 3.24
5290 6168 8.458573 TTTTCACACATACACTTTACATCCTT 57.541 30.769 0.00 0.00 0.00 3.36
5291 6169 7.667043 TTCACACATACACTTTACATCCTTC 57.333 36.000 0.00 0.00 0.00 3.46
5292 6170 6.170506 TCACACATACACTTTACATCCTTCC 58.829 40.000 0.00 0.00 0.00 3.46
5293 6171 5.937540 CACACATACACTTTACATCCTTCCA 59.062 40.000 0.00 0.00 0.00 3.53
5294 6172 6.599244 CACACATACACTTTACATCCTTCCAT 59.401 38.462 0.00 0.00 0.00 3.41
5295 6173 7.768582 CACACATACACTTTACATCCTTCCATA 59.231 37.037 0.00 0.00 0.00 2.74
5296 6174 7.769044 ACACATACACTTTACATCCTTCCATAC 59.231 37.037 0.00 0.00 0.00 2.39
5297 6175 7.768582 CACATACACTTTACATCCTTCCATACA 59.231 37.037 0.00 0.00 0.00 2.29
5298 6176 8.494433 ACATACACTTTACATCCTTCCATACAT 58.506 33.333 0.00 0.00 0.00 2.29
5299 6177 8.777413 CATACACTTTACATCCTTCCATACATG 58.223 37.037 0.00 0.00 0.00 3.21
5300 6178 6.721318 ACACTTTACATCCTTCCATACATGT 58.279 36.000 2.69 2.69 33.95 3.21
5301 6179 6.599244 ACACTTTACATCCTTCCATACATGTG 59.401 38.462 9.11 0.00 31.83 3.21
5302 6180 6.599244 CACTTTACATCCTTCCATACATGTGT 59.401 38.462 9.11 0.00 31.83 3.72
5303 6181 7.768582 CACTTTACATCCTTCCATACATGTGTA 59.231 37.037 9.11 0.00 31.83 2.90
5304 6182 8.494433 ACTTTACATCCTTCCATACATGTGTAT 58.506 33.333 9.11 0.00 41.58 2.29
5305 6183 9.342308 CTTTACATCCTTCCATACATGTGTATT 57.658 33.333 9.11 0.00 39.06 1.89
5306 6184 9.693739 TTTACATCCTTCCATACATGTGTATTT 57.306 29.630 9.11 0.00 39.06 1.40
5309 6187 9.866655 ACATCCTTCCATACATGTGTATTTATT 57.133 29.630 9.11 0.00 39.06 1.40
5385 6263 1.002366 CTTCATGAAGCTCGGTTCGG 58.998 55.000 21.96 0.00 0.00 4.30
5386 6264 0.320374 TTCATGAAGCTCGGTTCGGT 59.680 50.000 3.38 0.00 0.00 4.69
5387 6265 0.389817 TCATGAAGCTCGGTTCGGTG 60.390 55.000 0.00 6.17 0.00 4.94
5388 6266 1.741770 ATGAAGCTCGGTTCGGTGC 60.742 57.895 4.63 0.00 0.00 5.01
5389 6267 3.119096 GAAGCTCGGTTCGGTGCC 61.119 66.667 0.00 0.00 0.00 5.01
5390 6268 4.699522 AAGCTCGGTTCGGTGCCC 62.700 66.667 0.00 0.00 0.00 5.36
5392 6270 3.766691 GCTCGGTTCGGTGCCCTA 61.767 66.667 0.00 0.00 0.00 3.53
5393 6271 2.183555 CTCGGTTCGGTGCCCTAC 59.816 66.667 0.00 0.00 0.00 3.18
5394 6272 2.283388 TCGGTTCGGTGCCCTACT 60.283 61.111 0.00 0.00 0.00 2.57
5395 6273 2.183555 CGGTTCGGTGCCCTACTC 59.816 66.667 0.00 0.00 0.00 2.59
5396 6274 2.582978 GGTTCGGTGCCCTACTCC 59.417 66.667 0.00 0.00 0.00 3.85
5397 6275 2.582978 GTTCGGTGCCCTACTCCC 59.417 66.667 0.00 0.00 0.00 4.30
5398 6276 1.988406 GTTCGGTGCCCTACTCCCT 60.988 63.158 0.00 0.00 0.00 4.20
5399 6277 0.685458 GTTCGGTGCCCTACTCCCTA 60.685 60.000 0.00 0.00 0.00 3.53
5400 6278 0.263765 TTCGGTGCCCTACTCCCTAT 59.736 55.000 0.00 0.00 0.00 2.57
5401 6279 0.263765 TCGGTGCCCTACTCCCTATT 59.736 55.000 0.00 0.00 0.00 1.73
5402 6280 1.500303 TCGGTGCCCTACTCCCTATTA 59.500 52.381 0.00 0.00 0.00 0.98
5403 6281 2.091166 TCGGTGCCCTACTCCCTATTAA 60.091 50.000 0.00 0.00 0.00 1.40
5404 6282 2.299297 CGGTGCCCTACTCCCTATTAAG 59.701 54.545 0.00 0.00 0.00 1.85
5405 6283 3.315596 GGTGCCCTACTCCCTATTAAGT 58.684 50.000 0.00 0.00 0.00 2.24
5406 6284 3.071167 GGTGCCCTACTCCCTATTAAGTG 59.929 52.174 0.00 0.00 0.00 3.16
5407 6285 3.071167 GTGCCCTACTCCCTATTAAGTGG 59.929 52.174 0.00 0.00 0.00 4.00
5408 6286 2.038689 GCCCTACTCCCTATTAAGTGGC 59.961 54.545 0.00 0.00 30.35 5.01
5409 6287 3.588569 CCCTACTCCCTATTAAGTGGCT 58.411 50.000 0.00 0.00 0.00 4.75
5410 6288 4.748701 CCCTACTCCCTATTAAGTGGCTA 58.251 47.826 0.00 0.00 0.00 3.93
5411 6289 5.342866 CCCTACTCCCTATTAAGTGGCTAT 58.657 45.833 0.00 0.00 0.00 2.97
5412 6290 6.500336 CCCTACTCCCTATTAAGTGGCTATA 58.500 44.000 0.00 0.00 0.00 1.31
5413 6291 6.608002 CCCTACTCCCTATTAAGTGGCTATAG 59.392 46.154 0.00 0.00 0.00 1.31
5414 6292 6.097129 CCTACTCCCTATTAAGTGGCTATAGC 59.903 46.154 16.78 16.78 41.14 2.97
5415 6293 5.656420 ACTCCCTATTAAGTGGCTATAGCT 58.344 41.667 23.53 7.05 41.70 3.32
5416 6294 5.482175 ACTCCCTATTAAGTGGCTATAGCTG 59.518 44.000 23.53 4.13 41.70 4.24
5417 6295 4.777896 TCCCTATTAAGTGGCTATAGCTGG 59.222 45.833 23.53 11.33 41.70 4.85
5418 6296 4.508662 CCTATTAAGTGGCTATAGCTGGC 58.491 47.826 23.53 13.67 41.70 4.85
5426 6304 1.322442 GCTATAGCTGGCCAAAAGGG 58.678 55.000 17.75 0.00 38.21 3.95
5439 6317 4.718940 CCAAAAGGGCTGTACTAAATGG 57.281 45.455 0.00 0.00 0.00 3.16
5440 6318 3.447229 CCAAAAGGGCTGTACTAAATGGG 59.553 47.826 0.00 0.00 0.00 4.00
5441 6319 2.437085 AAGGGCTGTACTAAATGGGC 57.563 50.000 0.00 0.00 0.00 5.36
5442 6320 1.596496 AGGGCTGTACTAAATGGGCT 58.404 50.000 0.00 0.00 0.00 5.19
5443 6321 1.212935 AGGGCTGTACTAAATGGGCTG 59.787 52.381 0.00 0.00 0.00 4.85
5444 6322 1.680338 GGCTGTACTAAATGGGCTGG 58.320 55.000 0.00 0.00 0.00 4.85
5445 6323 1.025041 GCTGTACTAAATGGGCTGGC 58.975 55.000 0.00 0.00 0.00 4.85
5446 6324 1.680338 CTGTACTAAATGGGCTGGCC 58.320 55.000 14.23 14.23 0.00 5.36
5458 6336 4.015406 CTGGCCCGGTAGCACACA 62.015 66.667 0.00 0.00 0.00 3.72
5459 6337 3.958147 CTGGCCCGGTAGCACACAG 62.958 68.421 0.00 0.00 0.00 3.66
5460 6338 4.778143 GGCCCGGTAGCACACAGG 62.778 72.222 0.00 1.40 41.79 4.00
5461 6339 3.702048 GCCCGGTAGCACACAGGA 61.702 66.667 0.00 0.00 44.66 3.86
5462 6340 3.065306 CCCGGTAGCACACAGGAA 58.935 61.111 0.00 0.00 44.66 3.36
5463 6341 1.375523 CCCGGTAGCACACAGGAAC 60.376 63.158 0.00 0.00 44.66 3.62
5464 6342 1.736645 CCGGTAGCACACAGGAACG 60.737 63.158 0.00 0.00 44.66 3.95
5465 6343 1.736645 CGGTAGCACACAGGAACGG 60.737 63.158 0.00 0.00 0.00 4.44
5466 6344 2.033194 GGTAGCACACAGGAACGGC 61.033 63.158 0.00 0.00 0.00 5.68
5467 6345 1.301401 GTAGCACACAGGAACGGCA 60.301 57.895 0.00 0.00 0.00 5.69
5468 6346 0.673644 GTAGCACACAGGAACGGCAT 60.674 55.000 0.00 0.00 0.00 4.40
5469 6347 0.673333 TAGCACACAGGAACGGCATG 60.673 55.000 0.00 0.00 0.00 4.06
5470 6348 2.981560 GCACACAGGAACGGCATGG 61.982 63.158 0.00 0.00 31.20 3.66
5471 6349 2.672996 ACACAGGAACGGCATGGC 60.673 61.111 9.69 9.69 31.20 4.40
5472 6350 3.443045 CACAGGAACGGCATGGCC 61.443 66.667 14.46 0.00 46.75 5.36
5488 6366 2.903855 CCCAGGCACGGCATGATC 60.904 66.667 11.29 0.00 43.36 2.92
5489 6367 2.903855 CCAGGCACGGCATGATCC 60.904 66.667 11.29 0.00 43.36 3.36
5490 6368 2.124612 CAGGCACGGCATGATCCA 60.125 61.111 0.00 0.00 43.36 3.41
5491 6369 2.184830 CAGGCACGGCATGATCCAG 61.185 63.158 0.00 0.00 43.36 3.86
5492 6370 2.903855 GGCACGGCATGATCCAGG 60.904 66.667 0.00 0.00 0.00 4.45
5493 6371 2.124570 GCACGGCATGATCCAGGT 60.125 61.111 0.00 0.00 0.00 4.00
5494 6372 1.146041 GCACGGCATGATCCAGGTA 59.854 57.895 0.00 0.00 0.00 3.08
5495 6373 1.160329 GCACGGCATGATCCAGGTAC 61.160 60.000 0.00 0.00 0.00 3.34
5496 6374 0.177836 CACGGCATGATCCAGGTACA 59.822 55.000 0.00 0.00 0.00 2.90
5497 6375 0.465705 ACGGCATGATCCAGGTACAG 59.534 55.000 0.00 0.00 0.00 2.74
5498 6376 0.882042 CGGCATGATCCAGGTACAGC 60.882 60.000 0.00 0.00 0.00 4.40
5499 6377 0.181114 GGCATGATCCAGGTACAGCA 59.819 55.000 0.00 0.00 0.00 4.41
5500 6378 1.303309 GCATGATCCAGGTACAGCAC 58.697 55.000 0.00 0.00 0.00 4.40
5501 6379 1.575244 CATGATCCAGGTACAGCACG 58.425 55.000 0.00 0.00 0.00 5.34
5502 6380 1.136891 CATGATCCAGGTACAGCACGA 59.863 52.381 0.00 0.00 0.00 4.35
5503 6381 0.530744 TGATCCAGGTACAGCACGAC 59.469 55.000 0.00 0.00 0.00 4.34
5504 6382 0.179108 GATCCAGGTACAGCACGACC 60.179 60.000 0.00 0.00 35.83 4.79
5505 6383 1.614241 ATCCAGGTACAGCACGACCC 61.614 60.000 0.00 0.00 36.27 4.46
5506 6384 2.126071 CAGGTACAGCACGACCCG 60.126 66.667 0.00 0.00 36.27 5.28
5507 6385 3.379445 AGGTACAGCACGACCCGG 61.379 66.667 0.00 0.00 36.27 5.73
5508 6386 4.446413 GGTACAGCACGACCCGGG 62.446 72.222 22.25 22.25 0.00 5.73
5515 6393 2.812178 CACGACCCGGGCTAAACG 60.812 66.667 24.08 20.22 0.00 3.60
5525 6403 3.440415 GCTAAACGGGCCAGGCAC 61.440 66.667 15.19 9.32 0.00 5.01
5559 6437 4.517934 CATGCCTGGGCCTGGAGG 62.518 72.222 31.46 18.34 41.09 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
389 479 2.724977 CTTCAACAGCAGGACGAGTA 57.275 50.000 0.00 0.00 0.00 2.59
579 669 2.521958 AATCCTGGCGACCAACCGAG 62.522 60.000 0.00 0.00 30.80 4.63
593 683 2.166907 ATCCTCCGTGTCTGAATCCT 57.833 50.000 0.00 0.00 0.00 3.24
697 787 2.292802 GAATCGTTCGGTTGCGAGCC 62.293 60.000 0.00 0.00 40.56 4.70
727 817 1.598130 GCGCAAGACCAGTTCCACT 60.598 57.895 0.30 0.00 43.02 4.00
753 843 1.418342 CCGTCGGATTTGGTAGCACG 61.418 60.000 4.91 0.00 0.00 5.34
763 853 0.879090 GCCTTTTTGACCGTCGGATT 59.121 50.000 20.51 0.00 0.00 3.01
767 857 0.383860 GAACGCCTTTTTGACCGTCG 60.384 55.000 0.00 0.00 32.89 5.12
982 1074 1.546589 ATGGTCGTCGCTGGGGTTTA 61.547 55.000 0.00 0.00 0.00 2.01
1536 1644 2.038387 ACGAGGCGCCTAATTGAAAT 57.962 45.000 32.97 3.02 0.00 2.17
1567 1675 4.743644 GTCTGTACCCGCTATGTAATTCAC 59.256 45.833 0.00 0.00 0.00 3.18
1591 1699 6.516718 ACAAGTATACTGATCCGATTCCAAG 58.483 40.000 6.06 0.00 0.00 3.61
1653 1770 5.428253 TGCTAAGAGTAAACTGGCTATTGG 58.572 41.667 0.00 0.00 0.00 3.16
1654 1771 7.559590 AATGCTAAGAGTAAACTGGCTATTG 57.440 36.000 0.00 0.00 0.00 1.90
1673 1790 8.742777 TGCTAAGAATGAAACATCTTAAATGCT 58.257 29.630 0.00 0.00 37.61 3.79
1674 1791 8.915871 TGCTAAGAATGAAACATCTTAAATGC 57.084 30.769 0.00 0.00 37.61 3.56
1677 1794 9.357652 GCAATGCTAAGAATGAAACATCTTAAA 57.642 29.630 0.00 0.00 37.61 1.52
1678 1795 8.742777 AGCAATGCTAAGAATGAAACATCTTAA 58.257 29.630 5.69 0.00 37.61 1.85
1679 1796 8.284945 AGCAATGCTAAGAATGAAACATCTTA 57.715 30.769 5.69 0.00 36.99 2.10
1680 1797 7.166691 AGCAATGCTAAGAATGAAACATCTT 57.833 32.000 5.69 0.00 36.99 2.40
1681 1798 6.770746 AGCAATGCTAAGAATGAAACATCT 57.229 33.333 5.69 0.00 36.99 2.90
1683 1800 7.870509 TCTAGCAATGCTAAGAATGAAACAT 57.129 32.000 16.35 0.00 40.82 2.71
1684 1801 7.686438 TTCTAGCAATGCTAAGAATGAAACA 57.314 32.000 16.35 0.00 40.82 2.83
1685 1802 9.578439 AAATTCTAGCAATGCTAAGAATGAAAC 57.422 29.630 25.61 0.00 40.82 2.78
1692 1809 9.618890 ACATCTTAAATTCTAGCAATGCTAAGA 57.381 29.630 16.35 15.19 40.82 2.10
1709 1826 9.357652 GCAATGCTAAGAATGAAACATCTTAAA 57.642 29.630 0.00 0.00 37.61 1.52
1710 1827 8.742777 AGCAATGCTAAGAATGAAACATCTTAA 58.257 29.630 5.69 0.00 37.61 1.85
1711 1828 8.284945 AGCAATGCTAAGAATGAAACATCTTA 57.715 30.769 5.69 0.00 36.99 2.10
1712 1829 7.166691 AGCAATGCTAAGAATGAAACATCTT 57.833 32.000 5.69 0.00 36.99 2.40
1766 1883 2.867109 AGTTCTCACCCCAATCACAG 57.133 50.000 0.00 0.00 0.00 3.66
1910 2028 3.123621 CAGACACGCTAACAATCCTTGAC 59.876 47.826 0.00 0.00 0.00 3.18
1920 2038 5.176958 ACATAAACTGTTCAGACACGCTAAC 59.823 40.000 6.83 0.00 32.90 2.34
1952 2070 9.213777 AGTAGGTGAAGTATCATATGGAAAGAA 57.786 33.333 2.13 0.00 38.01 2.52
1953 2071 8.642432 CAGTAGGTGAAGTATCATATGGAAAGA 58.358 37.037 2.13 0.00 38.01 2.52
1954 2072 7.386299 GCAGTAGGTGAAGTATCATATGGAAAG 59.614 40.741 2.13 0.00 38.01 2.62
1955 2073 7.217200 GCAGTAGGTGAAGTATCATATGGAAA 58.783 38.462 2.13 0.00 38.01 3.13
1956 2074 6.239600 GGCAGTAGGTGAAGTATCATATGGAA 60.240 42.308 2.13 0.00 38.01 3.53
1957 2075 5.246203 GGCAGTAGGTGAAGTATCATATGGA 59.754 44.000 2.13 0.00 38.01 3.41
2091 2237 4.846168 AGGTGTTCCCTCTCCTTTAATC 57.154 45.455 0.00 0.00 40.71 1.75
2118 2264 4.820894 ACTATAGTCCTGAACACCAACC 57.179 45.455 0.00 0.00 0.00 3.77
2190 2336 0.912006 AGGTTCCCTCTTCCCTCTGC 60.912 60.000 0.00 0.00 0.00 4.26
2326 2480 2.387757 AGGATTGCAAACTGTTGGTGT 58.612 42.857 1.71 0.00 35.10 4.16
2347 2501 8.472413 AGACTACTATAGAATGGCACGTTTAAA 58.528 33.333 6.78 0.00 0.00 1.52
2533 2776 2.035832 GTCAATGGTGGTGGTTTCAAGG 59.964 50.000 0.00 0.00 0.00 3.61
2678 2921 4.233632 TGATGCTATTGATGGTCACCAA 57.766 40.909 0.00 0.00 36.95 3.67
2692 2935 3.068165 CCAGACGGTCACTAATGATGCTA 59.932 47.826 11.27 0.00 37.14 3.49
2890 3249 9.158233 ACTTGCATGGAAGATTTGATTTTATTG 57.842 29.630 30.84 2.31 0.00 1.90
2934 3298 1.539496 GGCAGTTGGTGTAGTGAACGA 60.539 52.381 0.00 0.00 0.00 3.85
3184 3548 1.969923 ACTGCTTCTCTGCTTCTCTGT 59.030 47.619 0.00 0.00 0.00 3.41
3247 3611 0.685785 TTTTGCAAGTGGGACTGCCA 60.686 50.000 0.00 0.00 35.15 4.92
3358 3984 4.625607 ACCACAGGAAGACCTCTAAAAG 57.374 45.455 0.00 0.00 45.94 2.27
3859 4674 6.150140 CAGAGAATTAGCAAATATAGTGGGCC 59.850 42.308 0.00 0.00 0.00 5.80
4251 5104 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
4253 5106 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
4254 5107 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
4255 5108 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
4257 5110 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
4258 5111 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
4259 5112 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
4260 5113 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
4261 5114 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
4262 5115 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
4263 5116 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
4265 5118 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
4266 5119 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
4267 5120 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
4268 5121 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
4269 5122 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
4270 5123 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
4271 5124 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
4272 5125 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
4273 5126 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
4274 5127 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
4275 5128 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
4276 5129 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
4277 5130 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
4301 5154 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
4302 5155 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
4303 5156 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
4304 5157 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
4305 5158 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
4306 5159 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
4307 5160 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
4308 5161 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
4309 5162 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
4310 5163 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
4311 5164 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
4312 5165 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
4313 5166 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
4314 5167 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
4315 5168 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
4316 5169 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
4317 5170 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
4318 5171 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
4319 5172 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
4320 5173 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
4321 5174 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
4322 5175 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
4323 5176 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
4324 5177 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
4325 5178 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
4326 5179 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
4327 5180 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
4328 5181 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
4329 5182 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4330 5183 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4331 5184 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4332 5185 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4333 5186 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4334 5187 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4335 5188 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4336 5189 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
4337 5190 1.400737 CTACTCCCTCCGTTCGGAAT 58.599 55.000 14.79 2.09 33.41 3.01
4338 5191 0.682209 CCTACTCCCTCCGTTCGGAA 60.682 60.000 14.79 0.04 33.41 4.30
4339 5192 1.077212 CCTACTCCCTCCGTTCGGA 60.077 63.158 13.34 13.34 0.00 4.55
4340 5193 0.467659 ATCCTACTCCCTCCGTTCGG 60.468 60.000 4.74 4.74 0.00 4.30
4341 5194 0.669077 CATCCTACTCCCTCCGTTCG 59.331 60.000 0.00 0.00 0.00 3.95
4342 5195 1.041437 CCATCCTACTCCCTCCGTTC 58.959 60.000 0.00 0.00 0.00 3.95
4343 5196 0.635009 TCCATCCTACTCCCTCCGTT 59.365 55.000 0.00 0.00 0.00 4.44
4344 5197 0.186386 CTCCATCCTACTCCCTCCGT 59.814 60.000 0.00 0.00 0.00 4.69
4345 5198 0.540830 CCTCCATCCTACTCCCTCCG 60.541 65.000 0.00 0.00 0.00 4.63
4346 5199 0.861155 TCCTCCATCCTACTCCCTCC 59.139 60.000 0.00 0.00 0.00 4.30
4347 5200 1.501604 ACTCCTCCATCCTACTCCCTC 59.498 57.143 0.00 0.00 0.00 4.30
4348 5201 1.219213 CACTCCTCCATCCTACTCCCT 59.781 57.143 0.00 0.00 0.00 4.20
4349 5202 1.218196 TCACTCCTCCATCCTACTCCC 59.782 57.143 0.00 0.00 0.00 4.30
4350 5203 2.757894 TCACTCCTCCATCCTACTCC 57.242 55.000 0.00 0.00 0.00 3.85
4351 5204 3.838565 TGATCACTCCTCCATCCTACTC 58.161 50.000 0.00 0.00 0.00 2.59
4352 5205 3.981516 TGATCACTCCTCCATCCTACT 57.018 47.619 0.00 0.00 0.00 2.57
4363 5216 3.285484 AGGTGAATGCATTGATCACTCC 58.715 45.455 22.82 15.46 42.36 3.85
4866 5743 4.656112 CACCAGACTTTCCATAGGAGGTAT 59.344 45.833 0.00 0.00 31.21 2.73
4906 5783 0.254747 TAGCACGCCCCAAAGCTTAT 59.745 50.000 0.00 0.00 38.47 1.73
4907 5784 0.675522 GTAGCACGCCCCAAAGCTTA 60.676 55.000 0.00 0.00 38.47 3.09
4932 5809 4.545823 TTTTTATAAAGATCAGCCGGCG 57.454 40.909 23.20 16.49 0.00 6.46
4950 5827 4.313819 GGTCCGGCCGATCTTTTT 57.686 55.556 30.73 0.00 0.00 1.94
4961 5838 4.124351 TAACTGCTCGCGGTCCGG 62.124 66.667 14.38 0.00 37.59 5.14
4970 5847 7.306866 CGCTTAATAGGTGAAATCTAACTGCTC 60.307 40.741 0.00 0.00 0.00 4.26
4997 5874 3.058085 GCTTGGTTTCCATTTGGCATTTG 60.058 43.478 0.00 0.00 31.53 2.32
5003 5880 3.749665 TGAAGCTTGGTTTCCATTTGG 57.250 42.857 2.10 0.00 31.53 3.28
5012 5889 0.613012 GGCCTCCATGAAGCTTGGTT 60.613 55.000 2.10 0.00 35.64 3.67
5016 5893 3.677156 ATAAAGGCCTCCATGAAGCTT 57.323 42.857 5.23 0.00 0.00 3.74
5021 5898 7.154191 AGATCTAAAATAAAGGCCTCCATGA 57.846 36.000 5.23 0.00 0.00 3.07
5160 6037 3.684305 GCCCCATATTTGTCTTTTTGTGC 59.316 43.478 0.00 0.00 0.00 4.57
5163 6040 7.509141 AAAAAGCCCCATATTTGTCTTTTTG 57.491 32.000 14.01 0.00 40.23 2.44
5198 6076 6.922247 ATCATGCACTTTAGAGATGAACAG 57.078 37.500 0.00 0.00 0.00 3.16
5199 6077 7.692460 AAATCATGCACTTTAGAGATGAACA 57.308 32.000 0.00 0.00 0.00 3.18
5200 6078 8.976986 AAAAATCATGCACTTTAGAGATGAAC 57.023 30.769 0.00 0.00 0.00 3.18
5224 6102 1.388547 AACTGCGAGCTGGACAAAAA 58.611 45.000 0.00 0.00 0.00 1.94
5225 6103 1.388547 AAACTGCGAGCTGGACAAAA 58.611 45.000 0.00 0.00 0.00 2.44
5226 6104 2.248280 TAAACTGCGAGCTGGACAAA 57.752 45.000 0.00 0.00 0.00 2.83
5227 6105 2.143122 CTTAAACTGCGAGCTGGACAA 58.857 47.619 0.00 0.00 0.00 3.18
5228 6106 1.608025 CCTTAAACTGCGAGCTGGACA 60.608 52.381 0.00 0.00 0.00 4.02
5229 6107 1.079503 CCTTAAACTGCGAGCTGGAC 58.920 55.000 0.00 0.00 0.00 4.02
5230 6108 0.685097 ACCTTAAACTGCGAGCTGGA 59.315 50.000 0.00 0.00 0.00 3.86
5231 6109 2.380084 TACCTTAAACTGCGAGCTGG 57.620 50.000 0.00 0.00 0.00 4.85
5232 6110 4.391830 TGAAATACCTTAAACTGCGAGCTG 59.608 41.667 0.00 0.37 0.00 4.24
5233 6111 4.575885 TGAAATACCTTAAACTGCGAGCT 58.424 39.130 0.00 0.00 0.00 4.09
5234 6112 4.939509 TGAAATACCTTAAACTGCGAGC 57.060 40.909 0.00 0.00 0.00 5.03
5235 6113 5.817816 AGGATGAAATACCTTAAACTGCGAG 59.182 40.000 0.00 0.00 31.95 5.03
5236 6114 5.584649 CAGGATGAAATACCTTAAACTGCGA 59.415 40.000 0.00 0.00 39.69 5.10
5237 6115 5.584649 TCAGGATGAAATACCTTAAACTGCG 59.415 40.000 0.00 0.00 45.97 5.18
5253 6131 8.081633 GTGTATGTGTGAAAAATTTCAGGATGA 58.918 33.333 8.76 0.00 46.80 2.92
5254 6132 8.084073 AGTGTATGTGTGAAAAATTTCAGGATG 58.916 33.333 8.76 0.00 46.80 3.51
5255 6133 8.181904 AGTGTATGTGTGAAAAATTTCAGGAT 57.818 30.769 8.76 4.68 46.80 3.24
5256 6134 7.581213 AGTGTATGTGTGAAAAATTTCAGGA 57.419 32.000 8.76 0.00 46.80 3.86
5257 6135 8.647143 AAAGTGTATGTGTGAAAAATTTCAGG 57.353 30.769 8.76 0.00 46.80 3.86
5262 6140 9.691362 GGATGTAAAGTGTATGTGTGAAAAATT 57.309 29.630 0.00 0.00 0.00 1.82
5263 6141 9.077885 AGGATGTAAAGTGTATGTGTGAAAAAT 57.922 29.630 0.00 0.00 0.00 1.82
5264 6142 8.458573 AGGATGTAAAGTGTATGTGTGAAAAA 57.541 30.769 0.00 0.00 0.00 1.94
5265 6143 8.458573 AAGGATGTAAAGTGTATGTGTGAAAA 57.541 30.769 0.00 0.00 0.00 2.29
5266 6144 7.174253 GGAAGGATGTAAAGTGTATGTGTGAAA 59.826 37.037 0.00 0.00 0.00 2.69
5267 6145 6.653320 GGAAGGATGTAAAGTGTATGTGTGAA 59.347 38.462 0.00 0.00 0.00 3.18
5268 6146 6.170506 GGAAGGATGTAAAGTGTATGTGTGA 58.829 40.000 0.00 0.00 0.00 3.58
5269 6147 5.937540 TGGAAGGATGTAAAGTGTATGTGTG 59.062 40.000 0.00 0.00 0.00 3.82
5270 6148 6.121776 TGGAAGGATGTAAAGTGTATGTGT 57.878 37.500 0.00 0.00 0.00 3.72
5271 6149 7.768582 TGTATGGAAGGATGTAAAGTGTATGTG 59.231 37.037 0.00 0.00 0.00 3.21
5272 6150 7.857456 TGTATGGAAGGATGTAAAGTGTATGT 58.143 34.615 0.00 0.00 0.00 2.29
5273 6151 8.777413 CATGTATGGAAGGATGTAAAGTGTATG 58.223 37.037 0.00 0.00 0.00 2.39
5274 6152 8.494433 ACATGTATGGAAGGATGTAAAGTGTAT 58.506 33.333 0.00 0.00 0.00 2.29
5275 6153 7.768582 CACATGTATGGAAGGATGTAAAGTGTA 59.231 37.037 0.00 0.00 0.00 2.90
5276 6154 6.599244 CACATGTATGGAAGGATGTAAAGTGT 59.401 38.462 0.00 0.00 0.00 3.55
5277 6155 6.599244 ACACATGTATGGAAGGATGTAAAGTG 59.401 38.462 0.00 0.00 0.00 3.16
5278 6156 6.721318 ACACATGTATGGAAGGATGTAAAGT 58.279 36.000 0.00 0.00 0.00 2.66
5279 6157 8.908786 ATACACATGTATGGAAGGATGTAAAG 57.091 34.615 0.00 0.00 39.57 1.85
5280 6158 9.693739 AAATACACATGTATGGAAGGATGTAAA 57.306 29.630 0.00 0.00 40.78 2.01
5283 6161 9.866655 AATAAATACACATGTATGGAAGGATGT 57.133 29.630 0.00 0.00 40.78 3.06
5366 6244 1.002366 CCGAACCGAGCTTCATGAAG 58.998 55.000 27.82 27.82 41.24 3.02
5367 6245 0.320374 ACCGAACCGAGCTTCATGAA 59.680 50.000 8.12 8.12 0.00 2.57
5368 6246 0.389817 CACCGAACCGAGCTTCATGA 60.390 55.000 0.00 0.00 0.00 3.07
5369 6247 1.970917 GCACCGAACCGAGCTTCATG 61.971 60.000 0.00 0.00 0.00 3.07
5370 6248 1.741770 GCACCGAACCGAGCTTCAT 60.742 57.895 0.00 0.00 0.00 2.57
5371 6249 2.357034 GCACCGAACCGAGCTTCA 60.357 61.111 0.00 0.00 0.00 3.02
5372 6250 3.119096 GGCACCGAACCGAGCTTC 61.119 66.667 0.00 0.00 0.00 3.86
5373 6251 4.699522 GGGCACCGAACCGAGCTT 62.700 66.667 0.00 0.00 40.86 3.74
5385 6263 3.071167 CCACTTAATAGGGAGTAGGGCAC 59.929 52.174 0.00 0.00 0.00 5.01
5386 6264 3.314693 CCACTTAATAGGGAGTAGGGCA 58.685 50.000 0.00 0.00 0.00 5.36
5387 6265 2.038689 GCCACTTAATAGGGAGTAGGGC 59.961 54.545 0.00 0.00 30.78 5.19
5388 6266 3.588569 AGCCACTTAATAGGGAGTAGGG 58.411 50.000 0.00 0.00 0.00 3.53
5389 6267 6.097129 GCTATAGCCACTTAATAGGGAGTAGG 59.903 46.154 14.13 0.00 34.31 3.18
5390 6268 6.893005 AGCTATAGCCACTTAATAGGGAGTAG 59.107 42.308 21.17 0.00 43.38 2.57
5391 6269 6.663953 CAGCTATAGCCACTTAATAGGGAGTA 59.336 42.308 21.17 0.00 43.38 2.59
5392 6270 5.482175 CAGCTATAGCCACTTAATAGGGAGT 59.518 44.000 21.17 0.00 43.38 3.85
5393 6271 5.105146 CCAGCTATAGCCACTTAATAGGGAG 60.105 48.000 21.17 0.00 43.38 4.30
5394 6272 4.777896 CCAGCTATAGCCACTTAATAGGGA 59.222 45.833 21.17 0.00 43.38 4.20
5395 6273 4.624125 GCCAGCTATAGCCACTTAATAGGG 60.624 50.000 21.17 8.26 43.38 3.53
5396 6274 4.508662 GCCAGCTATAGCCACTTAATAGG 58.491 47.826 21.17 9.95 43.38 2.57
5407 6285 1.322442 CCCTTTTGGCCAGCTATAGC 58.678 55.000 17.33 17.33 38.86 2.97
5418 6296 3.447229 CCCATTTAGTACAGCCCTTTTGG 59.553 47.826 0.00 0.00 39.97 3.28
5419 6297 3.119137 GCCCATTTAGTACAGCCCTTTTG 60.119 47.826 0.00 0.00 0.00 2.44
5420 6298 3.096852 GCCCATTTAGTACAGCCCTTTT 58.903 45.455 0.00 0.00 0.00 2.27
5421 6299 2.311841 AGCCCATTTAGTACAGCCCTTT 59.688 45.455 0.00 0.00 0.00 3.11
5422 6300 1.923148 AGCCCATTTAGTACAGCCCTT 59.077 47.619 0.00 0.00 0.00 3.95
5423 6301 1.212935 CAGCCCATTTAGTACAGCCCT 59.787 52.381 0.00 0.00 0.00 5.19
5424 6302 1.680338 CAGCCCATTTAGTACAGCCC 58.320 55.000 0.00 0.00 0.00 5.19
5425 6303 1.680338 CCAGCCCATTTAGTACAGCC 58.320 55.000 0.00 0.00 0.00 4.85
5426 6304 1.025041 GCCAGCCCATTTAGTACAGC 58.975 55.000 0.00 0.00 0.00 4.40
5427 6305 1.680338 GGCCAGCCCATTTAGTACAG 58.320 55.000 0.00 0.00 0.00 2.74
5428 6306 3.894742 GGCCAGCCCATTTAGTACA 57.105 52.632 0.00 0.00 0.00 2.90
5441 6319 3.958147 CTGTGTGCTACCGGGCCAG 62.958 68.421 6.32 0.00 0.00 4.85
5442 6320 4.015406 CTGTGTGCTACCGGGCCA 62.015 66.667 6.32 0.00 0.00 5.36
5443 6321 4.778143 CCTGTGTGCTACCGGGCC 62.778 72.222 6.32 0.00 30.62 5.80
5444 6322 3.248446 TTCCTGTGTGCTACCGGGC 62.248 63.158 6.32 0.00 34.67 6.13
5445 6323 1.375523 GTTCCTGTGTGCTACCGGG 60.376 63.158 6.32 0.00 34.67 5.73
5446 6324 1.736645 CGTTCCTGTGTGCTACCGG 60.737 63.158 0.00 0.00 35.18 5.28
5447 6325 1.736645 CCGTTCCTGTGTGCTACCG 60.737 63.158 0.00 0.00 0.00 4.02
5448 6326 2.033194 GCCGTTCCTGTGTGCTACC 61.033 63.158 0.00 0.00 0.00 3.18
5449 6327 0.673644 ATGCCGTTCCTGTGTGCTAC 60.674 55.000 0.00 0.00 0.00 3.58
5450 6328 0.673333 CATGCCGTTCCTGTGTGCTA 60.673 55.000 0.00 0.00 0.00 3.49
5451 6329 1.968017 CATGCCGTTCCTGTGTGCT 60.968 57.895 0.00 0.00 0.00 4.40
5452 6330 2.562912 CATGCCGTTCCTGTGTGC 59.437 61.111 0.00 0.00 0.00 4.57
5453 6331 2.981560 GCCATGCCGTTCCTGTGTG 61.982 63.158 0.00 0.00 0.00 3.82
5454 6332 2.672996 GCCATGCCGTTCCTGTGT 60.673 61.111 0.00 0.00 0.00 3.72
5455 6333 3.443045 GGCCATGCCGTTCCTGTG 61.443 66.667 0.00 0.00 39.62 3.66
5471 6349 2.903855 GATCATGCCGTGCCTGGG 60.904 66.667 0.00 0.00 0.00 4.45
5472 6350 2.903855 GGATCATGCCGTGCCTGG 60.904 66.667 0.00 0.00 0.00 4.45
5473 6351 2.124612 TGGATCATGCCGTGCCTG 60.125 61.111 0.00 0.00 0.00 4.85
5474 6352 2.191375 CTGGATCATGCCGTGCCT 59.809 61.111 0.00 0.00 0.00 4.75
5475 6353 2.324014 TACCTGGATCATGCCGTGCC 62.324 60.000 0.00 0.00 0.00 5.01
5476 6354 1.146041 TACCTGGATCATGCCGTGC 59.854 57.895 0.00 0.00 0.00 5.34
5477 6355 0.177836 TGTACCTGGATCATGCCGTG 59.822 55.000 0.00 0.00 0.00 4.94
5478 6356 0.465705 CTGTACCTGGATCATGCCGT 59.534 55.000 0.00 0.00 0.00 5.68
5479 6357 0.882042 GCTGTACCTGGATCATGCCG 60.882 60.000 0.00 0.00 0.00 5.69
5480 6358 0.181114 TGCTGTACCTGGATCATGCC 59.819 55.000 0.00 0.00 0.00 4.40
5481 6359 1.303309 GTGCTGTACCTGGATCATGC 58.697 55.000 0.00 5.73 0.00 4.06
5482 6360 1.136891 TCGTGCTGTACCTGGATCATG 59.863 52.381 0.00 0.00 0.00 3.07
5483 6361 1.137086 GTCGTGCTGTACCTGGATCAT 59.863 52.381 0.00 0.00 0.00 2.45
5484 6362 0.530744 GTCGTGCTGTACCTGGATCA 59.469 55.000 0.00 0.00 0.00 2.92
5485 6363 0.179108 GGTCGTGCTGTACCTGGATC 60.179 60.000 0.00 0.00 32.72 3.36
5486 6364 1.614241 GGGTCGTGCTGTACCTGGAT 61.614 60.000 0.00 0.00 35.97 3.41
5487 6365 2.280552 GGGTCGTGCTGTACCTGGA 61.281 63.158 0.00 0.00 35.97 3.86
5488 6366 2.264794 GGGTCGTGCTGTACCTGG 59.735 66.667 0.00 0.00 35.97 4.45
5489 6367 2.126071 CGGGTCGTGCTGTACCTG 60.126 66.667 0.00 0.00 35.97 4.00
5490 6368 3.379445 CCGGGTCGTGCTGTACCT 61.379 66.667 0.00 0.00 35.97 3.08
5491 6369 4.446413 CCCGGGTCGTGCTGTACC 62.446 72.222 14.18 0.00 34.85 3.34
5493 6371 3.942377 TAGCCCGGGTCGTGCTGTA 62.942 63.158 24.63 0.00 41.11 2.74
5495 6373 3.599285 TTTAGCCCGGGTCGTGCTG 62.599 63.158 24.63 0.00 41.11 4.41
5496 6374 3.315949 TTTAGCCCGGGTCGTGCT 61.316 61.111 24.63 15.10 43.60 4.40
5497 6375 3.122971 GTTTAGCCCGGGTCGTGC 61.123 66.667 24.63 6.99 0.00 5.34
5498 6376 2.812178 CGTTTAGCCCGGGTCGTG 60.812 66.667 24.63 3.60 0.00 4.35
5499 6377 4.073200 CCGTTTAGCCCGGGTCGT 62.073 66.667 24.63 10.03 41.78 4.34
5508 6386 3.440415 GTGCCTGGCCCGTTTAGC 61.440 66.667 17.53 0.00 0.00 3.09
5509 6387 3.124921 CGTGCCTGGCCCGTTTAG 61.125 66.667 17.53 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.