Multiple sequence alignment - TraesCS3B01G283600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G283600 chr3B 100.000 2534 0 0 1 2534 454655868 454658401 0.000000e+00 4680
1 TraesCS3B01G283600 chr4B 89.218 1994 73 45 578 2485 24052242 24050305 0.000000e+00 2361
2 TraesCS3B01G283600 chr4B 89.147 387 39 2 190 576 24053835 24053452 1.760000e-131 479
3 TraesCS3B01G283600 chr4B 88.210 229 20 3 1 224 24054062 24053836 1.490000e-67 267
4 TraesCS3B01G283600 chr4A 88.993 1808 128 29 1 1777 588938591 588940358 0.000000e+00 2170
5 TraesCS3B01G283600 chr4D 90.366 1121 57 21 683 1772 13253613 13252513 0.000000e+00 1424
6 TraesCS3B01G283600 chr4D 92.072 555 29 11 14 556 13254615 13254064 0.000000e+00 767


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G283600 chr3B 454655868 454658401 2533 False 4680.000000 4680 100.000000 1 2534 1 chr3B.!!$F1 2533
1 TraesCS3B01G283600 chr4B 24050305 24054062 3757 True 1035.666667 2361 88.858333 1 2485 3 chr4B.!!$R1 2484
2 TraesCS3B01G283600 chr4A 588938591 588940358 1767 False 2170.000000 2170 88.993000 1 1777 1 chr4A.!!$F1 1776
3 TraesCS3B01G283600 chr4D 13252513 13254615 2102 True 1095.500000 1424 91.219000 14 1772 2 chr4D.!!$R1 1758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 165 0.790993 AGTGGGTCTGTCTTAGGGGA 59.209 55.0 0.0 0.0 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1927 3613 0.179084 ATTTGATCGATCGCCCGTGT 60.179 50.0 20.03 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 165 0.790993 AGTGGGTCTGTCTTAGGGGA 59.209 55.000 0.00 0.00 0.00 4.81
183 191 2.203015 ATGTATGGTCGTGCCGGC 60.203 61.111 22.73 22.73 41.21 6.13
339 382 4.957296 ACGACTTAGATGAAAAGTGTGGT 58.043 39.130 0.00 0.00 37.31 4.16
358 401 9.596308 AGTGTGGTAGAAAATTTTAAATAGGGT 57.404 29.630 2.75 0.00 0.00 4.34
401 444 4.467198 ACAGGGAGTAAAAGGTGATACG 57.533 45.455 0.00 0.00 0.00 3.06
448 499 3.620488 GATAAAGGAGGCAATGTCCACA 58.380 45.455 0.00 0.00 36.43 4.17
522 573 6.741811 CGATGTACGAAATATGCTACCTAGTC 59.258 42.308 0.00 0.00 45.77 2.59
576 627 5.234543 TCGCGATGATATATAGGACGAGAAG 59.765 44.000 3.71 0.00 0.00 2.85
578 629 5.297278 GCGATGATATATAGGACGAGAAGGT 59.703 44.000 0.00 0.00 0.00 3.50
580 631 7.628794 GCGATGATATATAGGACGAGAAGGTTT 60.629 40.741 0.00 0.00 0.00 3.27
581 632 7.698550 CGATGATATATAGGACGAGAAGGTTTG 59.301 40.741 0.00 0.00 0.00 2.93
582 633 7.834881 TGATATATAGGACGAGAAGGTTTGT 57.165 36.000 0.00 0.00 0.00 2.83
583 634 7.883217 TGATATATAGGACGAGAAGGTTTGTC 58.117 38.462 0.00 0.00 0.00 3.18
585 636 2.821991 AGGACGAGAAGGTTTGTCAG 57.178 50.000 0.00 0.00 33.85 3.51
587 638 3.228453 AGGACGAGAAGGTTTGTCAGTA 58.772 45.455 0.00 0.00 33.85 2.74
588 639 3.640029 AGGACGAGAAGGTTTGTCAGTAA 59.360 43.478 0.00 0.00 33.85 2.24
708 2313 2.160205 TGGTTGGTTCGTTCAACAACA 58.840 42.857 12.69 4.98 44.38 3.33
709 2314 2.557056 TGGTTGGTTCGTTCAACAACAA 59.443 40.909 12.69 1.82 44.38 2.83
710 2315 2.918600 GGTTGGTTCGTTCAACAACAAC 59.081 45.455 12.69 0.99 44.38 3.32
770 2387 2.543861 CGGTCCATCGTTATCAGACAGG 60.544 54.545 0.00 0.00 0.00 4.00
850 2495 3.411446 TGCTGTGGTACCAAGATTTGAG 58.589 45.455 18.31 5.28 0.00 3.02
1006 2659 2.126071 CGACGACGGCCATGTCTT 60.126 61.111 14.79 3.83 36.71 3.01
1007 2660 2.158959 CGACGACGGCCATGTCTTC 61.159 63.158 14.79 10.99 36.71 2.87
1008 2661 1.215647 GACGACGGCCATGTCTTCT 59.784 57.895 2.24 0.00 35.08 2.85
1185 2841 2.094649 GGTCAAGTCCTACACCTTCGAG 60.095 54.545 0.00 0.00 0.00 4.04
1646 3302 9.277783 CACCTTTCTTGATAGAAAAAGAGAGAA 57.722 33.333 4.94 0.00 46.72 2.87
1660 3316 9.921637 GAAAAAGAGAGAAGAAACTATGAGAGA 57.078 33.333 0.00 0.00 0.00 3.10
1662 3318 9.874205 AAAAGAGAGAAGAAACTATGAGAGATG 57.126 33.333 0.00 0.00 0.00 2.90
1663 3319 8.821686 AAGAGAGAAGAAACTATGAGAGATGA 57.178 34.615 0.00 0.00 0.00 2.92
1665 3321 8.906867 AGAGAGAAGAAACTATGAGAGATGAAG 58.093 37.037 0.00 0.00 0.00 3.02
1666 3322 8.010733 AGAGAAGAAACTATGAGAGATGAAGG 57.989 38.462 0.00 0.00 0.00 3.46
1667 3323 7.619302 AGAGAAGAAACTATGAGAGATGAAGGT 59.381 37.037 0.00 0.00 0.00 3.50
1668 3324 7.555087 AGAAGAAACTATGAGAGATGAAGGTG 58.445 38.462 0.00 0.00 0.00 4.00
1669 3325 6.232581 AGAAACTATGAGAGATGAAGGTGG 57.767 41.667 0.00 0.00 0.00 4.61
1670 3326 5.130145 AGAAACTATGAGAGATGAAGGTGGG 59.870 44.000 0.00 0.00 0.00 4.61
1672 3328 2.277008 ATGAGAGATGAAGGTGGGGT 57.723 50.000 0.00 0.00 0.00 4.95
1673 3329 2.044793 TGAGAGATGAAGGTGGGGTT 57.955 50.000 0.00 0.00 0.00 4.11
1674 3330 1.630369 TGAGAGATGAAGGTGGGGTTG 59.370 52.381 0.00 0.00 0.00 3.77
1675 3331 0.329596 AGAGATGAAGGTGGGGTTGC 59.670 55.000 0.00 0.00 0.00 4.17
1677 3333 2.035626 ATGAAGGTGGGGTTGCGG 59.964 61.111 0.00 0.00 0.00 5.69
1685 3363 1.974343 TGGGGTTGCGGTGTAATGC 60.974 57.895 0.00 0.00 0.00 3.56
1789 3475 6.496218 TCAAGTGCTGGTATGATGAGATATCT 59.504 38.462 4.47 4.47 0.00 1.98
1793 3479 7.673504 AGTGCTGGTATGATGAGATATCTAGTT 59.326 37.037 4.89 0.00 0.00 2.24
1794 3480 8.310382 GTGCTGGTATGATGAGATATCTAGTTT 58.690 37.037 4.89 0.00 0.00 2.66
1795 3481 8.526978 TGCTGGTATGATGAGATATCTAGTTTC 58.473 37.037 4.89 1.45 0.00 2.78
1799 3485 9.814899 GGTATGATGAGATATCTAGTTTCCATG 57.185 37.037 4.89 0.00 0.00 3.66
1823 3509 8.461249 TGGAATGTATGGTAGTACTTCTACTC 57.539 38.462 0.00 0.00 45.86 2.59
1824 3510 8.280084 TGGAATGTATGGTAGTACTTCTACTCT 58.720 37.037 0.00 0.00 45.86 3.24
1827 3513 6.660800 TGTATGGTAGTACTTCTACTCTGCT 58.339 40.000 0.00 0.00 45.86 4.24
1829 3515 8.270030 TGTATGGTAGTACTTCTACTCTGCTTA 58.730 37.037 0.00 0.00 45.86 3.09
1849 3535 5.595952 GCTTATTCATTGAAATGGAGGGAGT 59.404 40.000 2.68 0.00 37.03 3.85
1865 3551 1.906574 GGAGTACCAACATGACCTCCA 59.093 52.381 0.00 0.00 35.97 3.86
1869 3555 5.099042 AGTACCAACATGACCTCCATTAC 57.901 43.478 0.00 0.00 31.94 1.89
1905 3591 2.485814 GAGCTTGCGATCCTGAGTTTTT 59.514 45.455 0.00 0.00 0.00 1.94
1924 3610 2.740506 TTTTTCCGGGACCTGAGTTT 57.259 45.000 0.00 0.00 0.00 2.66
1925 3611 2.740506 TTTTCCGGGACCTGAGTTTT 57.259 45.000 0.00 0.00 0.00 2.43
1926 3612 3.860968 TTTTCCGGGACCTGAGTTTTA 57.139 42.857 0.00 0.00 0.00 1.52
1927 3613 3.860968 TTTCCGGGACCTGAGTTTTAA 57.139 42.857 0.00 0.00 0.00 1.52
1928 3614 2.845363 TCCGGGACCTGAGTTTTAAC 57.155 50.000 0.00 0.00 0.00 2.01
1929 3615 2.048601 TCCGGGACCTGAGTTTTAACA 58.951 47.619 0.00 0.00 0.00 2.41
1930 3616 2.148768 CCGGGACCTGAGTTTTAACAC 58.851 52.381 0.31 0.00 0.00 3.32
1931 3617 1.796459 CGGGACCTGAGTTTTAACACG 59.204 52.381 0.00 0.00 0.00 4.49
1932 3618 2.148768 GGGACCTGAGTTTTAACACGG 58.851 52.381 0.00 0.00 0.00 4.94
1950 3636 2.223971 ACGGGCGATCGATCAAATAGTT 60.224 45.455 24.40 0.10 0.00 2.24
1960 3646 7.043986 CGATCGATCAAATAGTTTTTCGAGTCT 60.044 37.037 24.40 0.00 37.81 3.24
2028 3714 7.402640 GTCTCATTCGATTAACCATGAGTTTC 58.597 38.462 17.66 9.34 42.24 2.78
2086 3772 1.597854 CTCAACTGCTCGGGCACAA 60.598 57.895 5.44 0.00 44.28 3.33
2119 3806 4.678509 ATTACGGTGTGTGCATTGTTAG 57.321 40.909 0.00 0.00 0.00 2.34
2124 3811 2.819608 GGTGTGTGCATTGTTAGGATGT 59.180 45.455 0.00 0.00 0.00 3.06
2387 4091 8.146412 CCTCAAGATTTTTCAGAAGGACAAATT 58.854 33.333 0.00 0.00 36.33 1.82
2478 4182 9.131791 TGCTTTTGTTATCTAGGTTTTCTTTCT 57.868 29.630 0.00 0.00 0.00 2.52
2506 4210 1.651987 TTTTCCCGATCGATGACAGC 58.348 50.000 18.66 0.00 0.00 4.40
2507 4211 0.534873 TTTCCCGATCGATGACAGCA 59.465 50.000 18.66 0.00 0.00 4.41
2508 4212 0.752658 TTCCCGATCGATGACAGCAT 59.247 50.000 18.66 0.00 37.47 3.79
2509 4213 0.032540 TCCCGATCGATGACAGCATG 59.967 55.000 18.66 0.00 46.00 4.06
2520 4224 4.963878 CAGCATGTACAGTCCCCC 57.036 61.111 0.33 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.421424 AGTTTTCGCGAGTACTACGGAT 59.579 45.455 19.60 0.15 0.00 4.18
12 13 1.652619 GCCAGTTTTCGCGAGTACTAC 59.347 52.381 20.27 13.80 0.00 2.73
82 85 2.108566 CATGAGGAGCAGCGAGGG 59.891 66.667 0.00 0.00 0.00 4.30
157 165 0.397941 CGACCATACATGCATCCCCT 59.602 55.000 0.00 0.00 0.00 4.79
183 191 4.429505 TCCATATAGGATTGTCCTCCCTG 58.570 47.826 0.97 0.00 45.66 4.45
202 210 1.678728 CCAACTAGGAAGCGCAATCCA 60.679 52.381 27.53 15.74 41.22 3.41
382 425 3.447950 ACCGTATCACCTTTTACTCCCT 58.552 45.455 0.00 0.00 0.00 4.20
392 435 3.713826 AATTGTCCAACCGTATCACCT 57.286 42.857 0.00 0.00 0.00 4.00
416 459 3.572255 GCCTCCTTTATCCACACACAAAA 59.428 43.478 0.00 0.00 0.00 2.44
418 461 2.107378 TGCCTCCTTTATCCACACACAA 59.893 45.455 0.00 0.00 0.00 3.33
448 499 1.512926 GACAGTGTCGTGGAATTGCT 58.487 50.000 7.68 0.00 0.00 3.91
504 555 7.639162 AAAATCGACTAGGTAGCATATTTCG 57.361 36.000 0.00 0.00 0.00 3.46
515 566 7.866393 CGACCATTAGATTAAAATCGACTAGGT 59.134 37.037 0.00 8.54 40.35 3.08
517 568 7.381408 TGCGACCATTAGATTAAAATCGACTAG 59.619 37.037 0.00 0.00 40.35 2.57
522 573 8.560576 AAATTGCGACCATTAGATTAAAATCG 57.439 30.769 0.00 0.00 40.35 3.34
602 1859 4.123276 TCGACGTGTTTAGCAAATGAAC 57.877 40.909 0.00 0.00 0.00 3.18
708 2313 6.293735 CCGTGACCACACAATAATAACAAGTT 60.294 38.462 0.00 0.00 46.20 2.66
709 2314 5.180492 CCGTGACCACACAATAATAACAAGT 59.820 40.000 0.00 0.00 46.20 3.16
710 2315 5.410132 TCCGTGACCACACAATAATAACAAG 59.590 40.000 0.00 0.00 46.20 3.16
748 2353 1.407618 TGTCTGATAACGATGGACCGG 59.592 52.381 0.00 0.00 0.00 5.28
749 2354 2.543861 CCTGTCTGATAACGATGGACCG 60.544 54.545 0.00 0.00 0.00 4.79
770 2387 6.795399 TGAAATTTTGTCACTGTTTCTCTCC 58.205 36.000 0.00 0.00 31.79 3.71
890 2535 1.887242 GCACCGGCGATCTATTGCA 60.887 57.895 9.30 0.00 38.98 4.08
919 2566 2.140717 CCGGTCGGTTTTATAGATGCC 58.859 52.381 0.55 0.00 0.00 4.40
970 2618 0.887836 GTTGGGGTTTGGGAGTCGTC 60.888 60.000 0.00 0.00 0.00 4.20
971 2619 1.149854 GTTGGGGTTTGGGAGTCGT 59.850 57.895 0.00 0.00 0.00 4.34
972 2620 1.964373 CGTTGGGGTTTGGGAGTCG 60.964 63.158 0.00 0.00 0.00 4.18
1006 2659 2.637640 GGAGGAGGGTCAGGGGAGA 61.638 68.421 0.00 0.00 0.00 3.71
1007 2660 2.041405 GGAGGAGGGTCAGGGGAG 60.041 72.222 0.00 0.00 0.00 4.30
1008 2661 2.540910 AGGAGGAGGGTCAGGGGA 60.541 66.667 0.00 0.00 0.00 4.81
1370 3026 4.647615 CTATCACCCCGCGCTCCG 62.648 72.222 5.56 0.00 0.00 4.63
1646 3302 5.130145 CCCACCTTCATCTCTCATAGTTTCT 59.870 44.000 0.00 0.00 0.00 2.52
1649 3305 3.713764 CCCCACCTTCATCTCTCATAGTT 59.286 47.826 0.00 0.00 0.00 2.24
1660 3316 2.035626 CCGCAACCCCACCTTCAT 59.964 61.111 0.00 0.00 0.00 2.57
1662 3318 2.400269 TACACCGCAACCCCACCTTC 62.400 60.000 0.00 0.00 0.00 3.46
1663 3319 1.997256 TTACACCGCAACCCCACCTT 61.997 55.000 0.00 0.00 0.00 3.50
1665 3321 1.303806 ATTACACCGCAACCCCACC 60.304 57.895 0.00 0.00 0.00 4.61
1666 3322 1.880186 CATTACACCGCAACCCCAC 59.120 57.895 0.00 0.00 0.00 4.61
1667 3323 1.974343 GCATTACACCGCAACCCCA 60.974 57.895 0.00 0.00 0.00 4.96
1668 3324 2.882132 GCATTACACCGCAACCCC 59.118 61.111 0.00 0.00 0.00 4.95
1669 3325 2.483288 CGCATTACACCGCAACCC 59.517 61.111 0.00 0.00 0.00 4.11
1670 3326 2.483288 CCGCATTACACCGCAACC 59.517 61.111 0.00 0.00 0.00 3.77
1672 3328 2.748251 CCCCGCATTACACCGCAA 60.748 61.111 0.00 0.00 0.00 4.85
1673 3329 2.544590 ATTCCCCGCATTACACCGCA 62.545 55.000 0.00 0.00 0.00 5.69
1674 3330 1.381165 AATTCCCCGCATTACACCGC 61.381 55.000 0.00 0.00 0.00 5.68
1675 3331 0.380378 CAATTCCCCGCATTACACCG 59.620 55.000 0.00 0.00 0.00 4.94
1677 3333 0.814457 TGCAATTCCCCGCATTACAC 59.186 50.000 0.00 0.00 31.95 2.90
1685 3363 4.654091 ACTTGAAATATGCAATTCCCCG 57.346 40.909 0.00 0.00 0.00 5.73
1736 3414 1.070577 CCGTTTGTCTTTCTGCTCGTG 60.071 52.381 0.00 0.00 0.00 4.35
1789 3475 7.446106 ACTACCATACATTCCATGGAAACTA 57.554 36.000 30.28 20.98 44.95 2.24
1793 3479 7.347222 AGAAGTACTACCATACATTCCATGGAA 59.653 37.037 28.92 28.92 44.95 3.53
1794 3480 6.844388 AGAAGTACTACCATACATTCCATGGA 59.156 38.462 11.44 11.44 44.95 3.41
1823 3509 5.595542 TCCCTCCATTTCAATGAATAAGCAG 59.404 40.000 0.00 0.00 38.70 4.24
1824 3510 5.517924 TCCCTCCATTTCAATGAATAAGCA 58.482 37.500 0.00 0.00 38.70 3.91
1827 3513 7.060421 GGTACTCCCTCCATTTCAATGAATAA 58.940 38.462 0.00 0.00 38.70 1.40
1829 3515 5.044179 TGGTACTCCCTCCATTTCAATGAAT 60.044 40.000 0.00 0.00 38.70 2.57
1849 3535 4.080582 CCTGTAATGGAGGTCATGTTGGTA 60.081 45.833 0.00 0.00 35.99 3.25
1865 3551 4.592485 CTCGAATAGCTCCACCTGTAAT 57.408 45.455 0.00 0.00 0.00 1.89
1905 3591 2.740506 AAACTCAGGTCCCGGAAAAA 57.259 45.000 0.73 0.00 0.00 1.94
1906 3592 2.740506 AAAACTCAGGTCCCGGAAAA 57.259 45.000 0.73 0.00 0.00 2.29
1907 3593 3.117963 TGTTAAAACTCAGGTCCCGGAAA 60.118 43.478 0.73 0.00 0.00 3.13
1908 3594 2.438763 TGTTAAAACTCAGGTCCCGGAA 59.561 45.455 0.73 0.00 0.00 4.30
1909 3595 2.048601 TGTTAAAACTCAGGTCCCGGA 58.951 47.619 0.73 0.00 0.00 5.14
1910 3596 2.148768 GTGTTAAAACTCAGGTCCCGG 58.851 52.381 0.00 0.00 0.00 5.73
1911 3597 1.796459 CGTGTTAAAACTCAGGTCCCG 59.204 52.381 0.00 0.00 0.00 5.14
1913 3599 2.148768 CCCGTGTTAAAACTCAGGTCC 58.851 52.381 0.00 0.00 0.00 4.46
1914 3600 1.534163 GCCCGTGTTAAAACTCAGGTC 59.466 52.381 0.00 0.00 0.00 3.85
1915 3601 1.601166 GCCCGTGTTAAAACTCAGGT 58.399 50.000 0.00 0.00 0.00 4.00
1916 3602 0.515564 CGCCCGTGTTAAAACTCAGG 59.484 55.000 0.00 0.00 0.00 3.86
1917 3603 1.504359 TCGCCCGTGTTAAAACTCAG 58.496 50.000 0.00 0.00 0.00 3.35
1919 3605 1.060122 CGATCGCCCGTGTTAAAACTC 59.940 52.381 0.26 0.00 0.00 3.01
1920 3606 1.073177 CGATCGCCCGTGTTAAAACT 58.927 50.000 0.26 0.00 0.00 2.66
1921 3607 1.070038 TCGATCGCCCGTGTTAAAAC 58.930 50.000 11.09 0.00 0.00 2.43
1922 3608 1.928503 GATCGATCGCCCGTGTTAAAA 59.071 47.619 11.09 0.00 0.00 1.52
1923 3609 1.135053 TGATCGATCGCCCGTGTTAAA 60.135 47.619 20.03 0.00 0.00 1.52
1924 3610 0.456628 TGATCGATCGCCCGTGTTAA 59.543 50.000 20.03 0.00 0.00 2.01
1925 3611 0.456628 TTGATCGATCGCCCGTGTTA 59.543 50.000 20.03 0.00 0.00 2.41
1926 3612 0.390603 TTTGATCGATCGCCCGTGTT 60.391 50.000 20.03 0.00 0.00 3.32
1927 3613 0.179084 ATTTGATCGATCGCCCGTGT 60.179 50.000 20.03 0.00 0.00 4.49
1928 3614 1.721389 CTATTTGATCGATCGCCCGTG 59.279 52.381 20.03 5.49 0.00 4.94
1929 3615 1.340248 ACTATTTGATCGATCGCCCGT 59.660 47.619 20.03 10.42 0.00 5.28
1930 3616 2.065993 ACTATTTGATCGATCGCCCG 57.934 50.000 20.03 9.83 0.00 6.13
1931 3617 4.813296 AAAACTATTTGATCGATCGCCC 57.187 40.909 20.03 4.90 0.00 6.13
1932 3618 4.898488 CGAAAAACTATTTGATCGATCGCC 59.102 41.667 20.03 5.29 35.86 5.54
1933 3619 5.724239 TCGAAAAACTATTTGATCGATCGC 58.276 37.500 20.03 0.00 37.09 4.58
1950 3636 9.261180 CCTGCTAAATTATATCAGACTCGAAAA 57.739 33.333 0.00 0.00 0.00 2.29
2028 3714 1.683418 GGGGAGGTACCTAAGTGGCG 61.683 65.000 16.29 0.00 40.22 5.69
2056 3742 1.397315 GCAGTTGAGCGAGTTCGTTTC 60.397 52.381 3.27 2.90 42.22 2.78
2086 3772 4.112634 CACACCGTAATTCATGAGATCGT 58.887 43.478 0.00 0.00 0.00 3.73
2119 3806 6.585695 TTTAGATATCCGTCTGGTACATCC 57.414 41.667 0.00 0.00 38.20 3.51
2124 3811 4.222145 GGCCATTTAGATATCCGTCTGGTA 59.778 45.833 0.00 0.00 36.30 3.25
2339 4043 3.814504 TCCTCTCCTTCCAAATTTGCT 57.185 42.857 12.92 0.00 0.00 3.91
2387 4091 6.261158 TCACACAAAAATCTCATGAACCGTAA 59.739 34.615 0.00 0.00 0.00 3.18
2486 4190 2.006888 GCTGTCATCGATCGGGAAAAA 58.993 47.619 16.41 0.00 0.00 1.94
2487 4191 1.066502 TGCTGTCATCGATCGGGAAAA 60.067 47.619 16.41 4.99 0.00 2.29
2488 4192 0.534873 TGCTGTCATCGATCGGGAAA 59.465 50.000 16.41 7.78 0.00 3.13
2489 4193 0.752658 ATGCTGTCATCGATCGGGAA 59.247 50.000 16.41 0.00 0.00 3.97
2490 4194 0.032540 CATGCTGTCATCGATCGGGA 59.967 55.000 16.41 10.72 0.00 5.14
2491 4195 0.249615 ACATGCTGTCATCGATCGGG 60.250 55.000 16.41 8.33 0.00 5.14
2492 4196 2.054363 GTACATGCTGTCATCGATCGG 58.946 52.381 16.41 0.00 0.00 4.18
2493 4197 2.723143 CTGTACATGCTGTCATCGATCG 59.277 50.000 9.36 9.36 0.00 3.69
2494 4198 3.711086 ACTGTACATGCTGTCATCGATC 58.289 45.455 0.00 0.00 0.00 3.69
2495 4199 3.491619 GGACTGTACATGCTGTCATCGAT 60.492 47.826 13.20 0.00 38.53 3.59
2496 4200 2.159240 GGACTGTACATGCTGTCATCGA 60.159 50.000 13.20 0.00 38.53 3.59
2497 4201 2.196749 GGACTGTACATGCTGTCATCG 58.803 52.381 13.20 0.00 38.53 3.84
2498 4202 2.555199 GGGACTGTACATGCTGTCATC 58.445 52.381 13.20 3.64 38.53 2.92
2499 4203 1.210478 GGGGACTGTACATGCTGTCAT 59.790 52.381 13.20 0.00 38.53 3.06
2500 4204 0.613260 GGGGACTGTACATGCTGTCA 59.387 55.000 13.20 0.00 38.53 3.58
2501 4205 0.107654 GGGGGACTGTACATGCTGTC 60.108 60.000 0.00 0.00 36.84 3.51
2502 4206 1.991230 GGGGGACTGTACATGCTGT 59.009 57.895 0.00 0.00 0.00 4.40
2503 4207 4.963878 GGGGGACTGTACATGCTG 57.036 61.111 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.