AutoCloner

Multiple sequence alignment - TraesCS3B01G283000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G283000	chr3B	100.000	3067	0	0	1	3067	453997640	453994574	0.000000e+00	5664
1	TraesCS3B01G283000	chr3B	99.247	2787	17	4	168	2951	454374989	454372204	0.000000e+00	5027
2	TraesCS3B01G283000	chr3B	99.607	1782	7	0	1	1782	454204556	454202775	0.000000e+00	3253
3	TraesCS3B01G283000	chr3B	93.165	2180	98	20	521	2698	454488952	454486822	0.000000e+00	3153
4	TraesCS3B01G283000	chr3B	99.320	1176	6	2	1778	2951	454190575	454189400	0.000000e+00	2126
5	TraesCS3B01G283000	chr3B	89.257	875	58	23	6	866	454375838	454374986	0.000000e+00	1062
6	TraesCS3B01G283000	chr3B	99.259	135	0	1	2934	3067	453994836	453994702	3.060000e-60	243
7	TraesCS3B01G283000	chr3B	99.259	135	0	1	2934	3067	454189548	454189414	3.060000e-60	243
8	TraesCS3B01G283000	chr3B	98.519	135	1	1	2934	3067	454372352	454372218	1.420000e-58	237
9	TraesCS3B01G283000	chr4D	93.345	2960	141	34	6	2951	13927564	13930481	0.000000e+00	4324
10	TraesCS3B01G283000	chr4D	93.142	2960	147	34	6	2951	13838089	13841006	0.000000e+00	4290
11	TraesCS3B01G283000	chr4D	92.953	2966	152	35	1	2951	13743332	13746255	0.000000e+00	4266
12	TraesCS3B01G283000	chr4D	97.037	135	3	1	2934	3067	13746107	13746241	3.080000e-55	226
13	TraesCS3B01G283000	chr4D	97.037	135	3	1	2934	3067	13840858	13840992	3.080000e-55	226
14	TraesCS3B01G283000	chr4D	97.037	135	3	1	2934	3067	13930333	13930467	3.080000e-55	226
15	TraesCS3B01G283000	chr4B	92.202	2629	121	32	333	2951	24397829	24400383	0.000000e+00	3642
16	TraesCS3B01G283000	chr4B	94.774	2143	91	10	811	2951	24538485	24540608	0.000000e+00	3317
17	TraesCS3B01G283000	chr4B	91.989	724	42	11	6	720	24537750	24538466	0.000000e+00	1002
18	TraesCS3B01G283000	chr4B	97.037	135	3	1	2934	3067	24400235	24400369	3.080000e-55	226
19	TraesCS3B01G283000	chr4B	97.037	135	3	1	2934	3067	24540460	24540594	3.080000e-55	226
20	TraesCS3B01G283000	chr4A	89.153	2950	253	37	1	2928	457234638	457237542	0.000000e+00	3613
21	TraesCS3B01G283000	chr4A	95.431	2145	65	17	811	2951	588615150	588617265	0.000000e+00	3387
22	TraesCS3B01G283000	chr4A	87.539	1621	126	28	1	1581	586853235	586854819	0.000000e+00	1805
23	TraesCS3B01G283000	chrUn	97.037	135	3	1	2934	3067	379574078	379574212	3.080000e-55	226

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G283000	chr3B	453994574	453997640	3066	True	2953.500000	5664	99.629500	1	3067	2	chr3B.!!$R3	3066
1	TraesCS3B01G283000	chr3B	454202775	454204556	1781	True	3253.000000	3253	99.607000	1	1782	1	chr3B.!!$R1	1781
2	TraesCS3B01G283000	chr3B	454486822	454488952	2130	True	3153.000000	3153	93.165000	521	2698	1	chr3B.!!$R2	2177
3	TraesCS3B01G283000	chr3B	454372204	454375838	3634	True	2108.666667	5027	95.674333	6	3067	3	chr3B.!!$R5	3061
4	TraesCS3B01G283000	chr3B	454189400	454190575	1175	True	1184.500000	2126	99.289500	1778	3067	2	chr3B.!!$R4	1289
5	TraesCS3B01G283000	chr4D	13927564	13930481	2917	False	2275.000000	4324	95.191000	6	3067	2	chr4D.!!$F3	3061
6	TraesCS3B01G283000	chr4D	13838089	13841006	2917	False	2258.000000	4290	95.089500	6	3067	2	chr4D.!!$F2	3061
7	TraesCS3B01G283000	chr4D	13743332	13746255	2923	False	2246.000000	4266	94.995000	1	3067	2	chr4D.!!$F1	3066
8	TraesCS3B01G283000	chr4B	24397829	24400383	2554	False	1934.000000	3642	94.619500	333	3067	2	chr4B.!!$F1	2734
9	TraesCS3B01G283000	chr4B	24537750	24540608	2858	False	1515.000000	3317	94.600000	6	3067	3	chr4B.!!$F2	3061
10	TraesCS3B01G283000	chr4A	457234638	457237542	2904	False	3613.000000	3613	89.153000	1	2928	1	chr4A.!!$F1	2927
11	TraesCS3B01G283000	chr4A	588615150	588617265	2115	False	3387.000000	3387	95.431000	811	2951	1	chr4A.!!$F3	2140
12	TraesCS3B01G283000	chr4A	586853235	586854819	1584	False	1805.000000	1805	87.539000	1	1581	1	chr4A.!!$F2	1580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1423	2244	0.946221	GGTCAAGCTCGTCCACTGTG	60.946	60.0	0.0	0.0	0.0	3.66	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
3016	3839	0.028505	CATGGCGTGCAAGATACAGC	59.971	55.0	2.99	0.0	0.0	4.4	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1423	2244	0.946221	GGTCAAGCTCGTCCACTGTG	60.946	60.000	0.00	0.00	0.00	3.66
2052	2874	5.605069	TGCCCAAATGCTACTACCTAATCTA	59.395	40.000	0.00	0.00	0.00	1.98
2228	3050	0.727398	GCTGTAAAAGGCGTGGCTAG	59.273	55.000	0.00	0.00	0.00	3.42
2943	3766	7.046292	ACCCCTATTAAAAATAATTCACCGC	57.954	36.000	0.00	0.00	0.00	5.68
2944	3767	6.608002	ACCCCTATTAAAAATAATTCACCGCA	59.392	34.615	0.00	0.00	0.00	5.69
2945	3768	7.289084	ACCCCTATTAAAAATAATTCACCGCAT	59.711	33.333	0.00	0.00	0.00	4.73
2946	3769	8.147704	CCCCTATTAAAAATAATTCACCGCATT	58.852	33.333	0.00	0.00	0.00	3.56
2947	3770	8.977505	CCCTATTAAAAATAATTCACCGCATTG	58.022	33.333	0.00	0.00	0.00	2.82
2951	3774	6.720012	AAAAATAATTCACCGCATTGTTCC	57.280	33.333	0.00	0.00	0.00	3.62
2953	3776	1.923356	AATTCACCGCATTGTTCCCT	58.077	45.000	0.00	0.00	0.00	4.20
2954	3777	2.799126	ATTCACCGCATTGTTCCCTA	57.201	45.000	0.00	0.00	0.00	3.53
2955	3778	2.570415	TTCACCGCATTGTTCCCTAA	57.430	45.000	0.00	0.00	0.00	2.69
2956	3779	1.816074	TCACCGCATTGTTCCCTAAC	58.184	50.000	0.00	0.00	36.07	2.34
2957	3780	0.808755	CACCGCATTGTTCCCTAACC	59.191	55.000	0.00	0.00	34.49	2.85
2958	3781	0.402504	ACCGCATTGTTCCCTAACCA	59.597	50.000	0.00	0.00	34.49	3.67
2959	3782	1.202952	ACCGCATTGTTCCCTAACCAA	60.203	47.619	0.00	0.00	34.49	3.67
2960	3783	1.889829	CCGCATTGTTCCCTAACCAAA	59.110	47.619	0.00	0.00	34.49	3.28
2961	3784	2.094752	CCGCATTGTTCCCTAACCAAAG	60.095	50.000	0.00	0.00	34.49	2.77
2962	3785	2.556622	CGCATTGTTCCCTAACCAAAGT	59.443	45.455	0.00	0.00	34.49	2.66
2963	3786	3.005367	CGCATTGTTCCCTAACCAAAGTT	59.995	43.478	0.00	0.00	40.15	2.66
2964	3787	4.500716	CGCATTGTTCCCTAACCAAAGTTT	60.501	41.667	0.00	0.00	37.42	2.66
2965	3788	4.988540	GCATTGTTCCCTAACCAAAGTTTC	59.011	41.667	0.00	0.00	37.42	2.78
2966	3789	5.221441	GCATTGTTCCCTAACCAAAGTTTCT	60.221	40.000	0.00	0.00	37.42	2.52
2967	3790	5.845391	TTGTTCCCTAACCAAAGTTTCTG	57.155	39.130	0.00	0.00	37.42	3.02
2968	3791	3.634910	TGTTCCCTAACCAAAGTTTCTGC	59.365	43.478	0.00	0.00	37.42	4.26
2969	3792	3.876309	TCCCTAACCAAAGTTTCTGCT	57.124	42.857	0.00	0.00	37.42	4.24
2970	3793	4.178956	TCCCTAACCAAAGTTTCTGCTT	57.821	40.909	0.00	0.00	37.42	3.91
2971	3794	3.888930	TCCCTAACCAAAGTTTCTGCTTG	59.111	43.478	0.00	0.00	37.42	4.01
2972	3795	3.552890	CCCTAACCAAAGTTTCTGCTTGC	60.553	47.826	0.00	0.00	37.42	4.01
2973	3796	3.319122	CCTAACCAAAGTTTCTGCTTGCT	59.681	43.478	0.00	0.00	37.42	3.91
2974	3797	3.893326	AACCAAAGTTTCTGCTTGCTT	57.107	38.095	0.00	0.00	29.61	3.91
2975	3798	5.009610	CCTAACCAAAGTTTCTGCTTGCTTA	59.990	40.000	0.00	0.00	37.42	3.09
2976	3799	5.535753	AACCAAAGTTTCTGCTTGCTTAT	57.464	34.783	0.00	0.00	29.61	1.73
2977	3800	4.874970	ACCAAAGTTTCTGCTTGCTTATG	58.125	39.130	0.00	0.00	0.00	1.90
2978	3801	4.240096	CCAAAGTTTCTGCTTGCTTATGG	58.760	43.478	0.00	0.00	0.00	2.74
2979	3802	4.262164	CCAAAGTTTCTGCTTGCTTATGGT	60.262	41.667	0.00	0.00	0.00	3.55
2980	3803	4.510038	AAGTTTCTGCTTGCTTATGGTG	57.490	40.909	0.00	0.00	0.00	4.17
2981	3804	3.490348	AGTTTCTGCTTGCTTATGGTGT	58.510	40.909	0.00	0.00	0.00	4.16
2982	3805	3.254166	AGTTTCTGCTTGCTTATGGTGTG	59.746	43.478	0.00	0.00	0.00	3.82
2983	3806	2.566833	TCTGCTTGCTTATGGTGTGT	57.433	45.000	0.00	0.00	0.00	3.72
2984	3807	2.862541	TCTGCTTGCTTATGGTGTGTT	58.137	42.857	0.00	0.00	0.00	3.32
2985	3808	2.553602	TCTGCTTGCTTATGGTGTGTTG	59.446	45.455	0.00	0.00	0.00	3.33
2986	3809	1.000385	TGCTTGCTTATGGTGTGTTGC	60.000	47.619	0.00	0.00	0.00	4.17
2987	3810	1.000385	GCTTGCTTATGGTGTGTTGCA	60.000	47.619	0.00	0.00	0.00	4.08
2988	3811	2.664916	CTTGCTTATGGTGTGTTGCAC	58.335	47.619	0.00	0.00	46.97	4.57
3000	3823	5.505165	GTGTGTTGCACATGAATGATTTC	57.495	39.130	0.00	0.00	46.32	2.17
3001	3824	4.983538	GTGTGTTGCACATGAATGATTTCA	59.016	37.500	0.00	0.00	46.32	2.69
3011	3834	4.291540	TGAATGATTTCATTAGTGCGCC	57.708	40.909	4.18	0.00	45.72	6.53
3012	3835	3.693578	TGAATGATTTCATTAGTGCGCCA	59.306	39.130	4.18	0.00	45.72	5.69
3013	3836	4.338964	TGAATGATTTCATTAGTGCGCCAT	59.661	37.500	4.18	0.00	45.72	4.40
3014	3837	3.696281	TGATTTCATTAGTGCGCCATG	57.304	42.857	4.18	2.02	0.00	3.66
3015	3838	3.016031	TGATTTCATTAGTGCGCCATGT	58.984	40.909	4.18	0.00	0.00	3.21
3016	3839	2.917701	TTTCATTAGTGCGCCATGTG	57.082	45.000	4.18	0.00	0.00	3.21
3017	3840	0.451383	TTCATTAGTGCGCCATGTGC	59.549	50.000	4.18	0.46	39.75	4.57
3018	3841	0.392863	TCATTAGTGCGCCATGTGCT	60.393	50.000	4.18	0.00	40.03	4.40
3019	3842	0.248336	CATTAGTGCGCCATGTGCTG	60.248	55.000	4.18	0.00	40.03	4.41
3020	3843	0.677731	ATTAGTGCGCCATGTGCTGT	60.678	50.000	4.18	0.00	40.03	4.40
3021	3844	0.036858	TTAGTGCGCCATGTGCTGTA	60.037	50.000	4.18	0.00	40.03	2.74
3022	3845	0.177836	TAGTGCGCCATGTGCTGTAT	59.822	50.000	4.18	0.00	40.03	2.29
3023	3846	1.091771	AGTGCGCCATGTGCTGTATC	61.092	55.000	4.18	0.00	40.03	2.24
3024	3847	1.091771	GTGCGCCATGTGCTGTATCT	61.092	55.000	4.18	0.00	40.03	1.98
3025	3848	0.392863	TGCGCCATGTGCTGTATCTT	60.393	50.000	4.18	0.00	40.03	2.40
3026	3849	0.028505	GCGCCATGTGCTGTATCTTG	59.971	55.000	0.00	0.00	38.05	3.02
3027	3850	0.028505	CGCCATGTGCTGTATCTTGC	59.971	55.000	4.92	0.00	38.05	4.01
3028	3851	1.097232	GCCATGTGCTGTATCTTGCA	58.903	50.000	0.00	0.00	36.87	4.08
3032	3855	3.889227	TGCTGTATCTTGCACGCC	58.111	55.556	0.00	0.00	33.94	5.68
3033	3856	1.003959	TGCTGTATCTTGCACGCCA	60.004	52.632	0.00	0.00	33.94	5.69
3034	3857	0.392863	TGCTGTATCTTGCACGCCAT	60.393	50.000	0.00	0.00	33.94	4.40
3035	3858	0.028505	GCTGTATCTTGCACGCCATG	59.971	55.000	0.00	0.00	0.00	3.66
3036	3859	1.372582	CTGTATCTTGCACGCCATGT	58.627	50.000	0.00	0.00	0.00	3.21
3049	3872	1.735571	CGCCATGTGGTGTAACTAACC	59.264	52.381	4.44	0.00	40.69	2.85
3050	3873	2.089201	GCCATGTGGTGTAACTAACCC	58.911	52.381	0.35	0.00	36.83	4.11
3051	3874	2.718563	CCATGTGGTGTAACTAACCCC	58.281	52.381	0.00	0.00	36.83	4.95
3052	3875	2.307686	CCATGTGGTGTAACTAACCCCT	59.692	50.000	0.00	0.00	36.83	4.79
3053	3876	3.520317	CCATGTGGTGTAACTAACCCCTA	59.480	47.826	0.00	0.00	36.83	3.53
3054	3877	4.165372	CCATGTGGTGTAACTAACCCCTAT	59.835	45.833	0.00	0.00	36.83	2.57
3055	3878	5.339695	CCATGTGGTGTAACTAACCCCTATT	60.340	44.000	0.00	0.00	36.83	1.73
3056	3879	6.126710	CCATGTGGTGTAACTAACCCCTATTA	60.127	42.308	0.00	0.00	36.83	0.98
3057	3880	6.949117	TGTGGTGTAACTAACCCCTATTAA	57.051	37.500	0.00	0.00	36.83	1.40
3058	3881	7.327064	TGTGGTGTAACTAACCCCTATTAAA	57.673	36.000	0.00	0.00	36.83	1.52
3059	3882	7.753630	TGTGGTGTAACTAACCCCTATTAAAA	58.246	34.615	0.00	0.00	36.83	1.52
3060	3883	8.223330	TGTGGTGTAACTAACCCCTATTAAAAA	58.777	33.333	0.00	0.00	36.83	1.94
3061	3884	9.246670	GTGGTGTAACTAACCCCTATTAAAAAT	57.753	33.333	0.00	0.00	36.83	1.82

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
842	1659	1.867919	CGACGCACAGAAGAGGAGGT	61.868	60.000	0.00	0.00	0.00	3.85
2052	2874	1.137086	GTATCATCACCACGCTCCTGT	59.863	52.381	0.00	0.00	0.00	4.00
2228	3050	0.889186	TCTTCCAGAGCCGCCAAAAC	60.889	55.000	0.00	0.00	0.00	2.43
2939	3762	0.402504	TGGTTAGGGAACAATGCGGT	59.597	50.000	0.00	0.00	37.29	5.68
2940	3763	1.540267	TTGGTTAGGGAACAATGCGG	58.460	50.000	0.00	0.00	37.29	5.69
2942	3765	4.600692	AACTTTGGTTAGGGAACAATGC	57.399	40.909	0.00	0.00	37.29	3.56
2943	3766	6.215845	CAGAAACTTTGGTTAGGGAACAATG	58.784	40.000	0.00	0.00	37.29	2.82
2944	3767	5.221441	GCAGAAACTTTGGTTAGGGAACAAT	60.221	40.000	0.00	0.00	37.29	2.71
2945	3768	4.098807	GCAGAAACTTTGGTTAGGGAACAA	59.901	41.667	0.00	0.00	37.29	2.83
2946	3769	3.634910	GCAGAAACTTTGGTTAGGGAACA	59.365	43.478	0.00	0.00	37.29	3.18
2947	3770	3.889538	AGCAGAAACTTTGGTTAGGGAAC	59.110	43.478	0.00	0.00	34.90	3.62
2949	3772	3.876309	AGCAGAAACTTTGGTTAGGGA	57.124	42.857	0.00	0.00	34.90	4.20
2950	3773	3.552890	GCAAGCAGAAACTTTGGTTAGGG	60.553	47.826	0.00	0.00	34.76	3.53
2951	3774	3.319122	AGCAAGCAGAAACTTTGGTTAGG	59.681	43.478	0.00	0.00	34.76	2.69
2953	3776	6.446318	CATAAGCAAGCAGAAACTTTGGTTA	58.554	36.000	9.58	9.58	34.76	2.85
2954	3777	3.893326	AAGCAAGCAGAAACTTTGGTT	57.107	38.095	0.00	0.00	36.76	3.67
2955	3778	4.262164	CCATAAGCAAGCAGAAACTTTGGT	60.262	41.667	0.00	0.00	0.00	3.67
2956	3779	4.240096	CCATAAGCAAGCAGAAACTTTGG	58.760	43.478	0.00	0.00	0.00	3.28
2957	3780	4.682860	CACCATAAGCAAGCAGAAACTTTG	59.317	41.667	0.00	0.00	0.00	2.77
2958	3781	4.342092	ACACCATAAGCAAGCAGAAACTTT	59.658	37.500	0.00	0.00	0.00	2.66
2959	3782	3.891366	ACACCATAAGCAAGCAGAAACTT	59.109	39.130	0.00	0.00	0.00	2.66
2960	3783	3.254166	CACACCATAAGCAAGCAGAAACT	59.746	43.478	0.00	0.00	0.00	2.66
2961	3784	3.004734	ACACACCATAAGCAAGCAGAAAC	59.995	43.478	0.00	0.00	0.00	2.78
2962	3785	3.221771	ACACACCATAAGCAAGCAGAAA	58.778	40.909	0.00	0.00	0.00	2.52
2963	3786	2.862541	ACACACCATAAGCAAGCAGAA	58.137	42.857	0.00	0.00	0.00	3.02
2964	3787	2.553602	CAACACACCATAAGCAAGCAGA	59.446	45.455	0.00	0.00	0.00	4.26
2965	3788	2.923605	GCAACACACCATAAGCAAGCAG	60.924	50.000	0.00	0.00	0.00	4.24
2966	3789	1.000385	GCAACACACCATAAGCAAGCA	60.000	47.619	0.00	0.00	0.00	3.91
2967	3790	1.000385	TGCAACACACCATAAGCAAGC	60.000	47.619	0.00	0.00	0.00	4.01
2968	3791	2.664916	GTGCAACACACCATAAGCAAG	58.335	47.619	0.00	0.00	44.02	4.01
2969	3792	2.791383	GTGCAACACACCATAAGCAA	57.209	45.000	0.00	0.00	44.02	3.91
2975	3798	9.565625	TGAAATCATTCATGTGCAACACACCAT	62.566	37.037	1.93	0.00	43.50	3.55
2976	3799	8.352196	TGAAATCATTCATGTGCAACACACCA	62.352	38.462	1.93	0.00	43.50	4.17
2977	3800	6.021453	TGAAATCATTCATGTGCAACACACC	61.021	40.000	1.93	0.00	43.50	4.16
2978	3801	4.983538	TGAAATCATTCATGTGCAACACAC	59.016	37.500	1.93	0.00	40.71	3.82
2979	3802	5.197682	TGAAATCATTCATGTGCAACACA	57.802	34.783	2.45	2.45	40.71	3.72
2991	3814	4.291540	TGGCGCACTAATGAAATCATTC	57.708	40.909	10.83	0.00	44.67	2.67
2993	3816	3.633525	ACATGGCGCACTAATGAAATCAT	59.366	39.130	10.83	0.00	38.41	2.45
2994	3817	3.016031	ACATGGCGCACTAATGAAATCA	58.984	40.909	10.83	0.00	0.00	2.57
2995	3818	3.365832	CACATGGCGCACTAATGAAATC	58.634	45.455	10.83	0.00	0.00	2.17
2996	3819	2.480073	GCACATGGCGCACTAATGAAAT	60.480	45.455	10.83	0.00	0.00	2.17
2997	3820	1.135431	GCACATGGCGCACTAATGAAA	60.135	47.619	10.83	0.00	0.00	2.69
2998	3821	0.451383	GCACATGGCGCACTAATGAA	59.549	50.000	10.83	0.00	0.00	2.57
2999	3822	2.097444	GCACATGGCGCACTAATGA	58.903	52.632	10.83	0.00	0.00	2.57
3000	3823	4.696078	GCACATGGCGCACTAATG	57.304	55.556	10.83	9.84	0.00	1.90
3009	3832	1.097232	TGCAAGATACAGCACATGGC	58.903	50.000	0.00	0.00	45.30	4.40
3015	3838	0.392863	ATGGCGTGCAAGATACAGCA	60.393	50.000	2.99	0.00	38.65	4.41
3016	3839	0.028505	CATGGCGTGCAAGATACAGC	59.971	55.000	2.99	0.00	0.00	4.40
3017	3840	1.063027	CACATGGCGTGCAAGATACAG	59.937	52.381	6.62	0.00	39.19	2.74
3018	3841	1.085893	CACATGGCGTGCAAGATACA	58.914	50.000	6.62	0.00	39.19	2.29
3019	3842	0.378257	CCACATGGCGTGCAAGATAC	59.622	55.000	6.62	0.00	44.91	2.24
3020	3843	0.035534	ACCACATGGCGTGCAAGATA	60.036	50.000	6.62	0.00	44.91	1.98
3021	3844	1.303561	ACCACATGGCGTGCAAGAT	60.304	52.632	6.62	0.00	44.91	2.40
3022	3845	2.112928	ACCACATGGCGTGCAAGA	59.887	55.556	6.62	0.00	44.91	3.02
3023	3846	1.233950	TACACCACATGGCGTGCAAG	61.234	55.000	6.62	0.00	44.91	4.01
3024	3847	0.819666	TTACACCACATGGCGTGCAA	60.820	50.000	6.62	5.43	44.91	4.08
3025	3848	1.227973	TTACACCACATGGCGTGCA	60.228	52.632	6.62	0.00	44.91	4.57
3026	3849	1.209127	GTTACACCACATGGCGTGC	59.791	57.895	6.62	0.00	44.91	5.34
3027	3850	2.087501	TAGTTACACCACATGGCGTG	57.912	50.000	4.87	4.87	45.92	5.34
3028	3851	2.419667	GTTAGTTACACCACATGGCGT	58.580	47.619	0.00	0.00	39.32	5.68
3029	3852	1.735571	GGTTAGTTACACCACATGGCG	59.264	52.381	0.00	0.00	39.32	5.69
3030	3853	2.089201	GGGTTAGTTACACCACATGGC	58.911	52.381	0.00	0.00	39.32	4.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.