Multiple sequence alignment - TraesCS3B01G281200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G281200 chr3B 100.000 5824 0 0 1 5824 451879875 451874052 0.000000e+00 10756.0
1 TraesCS3B01G281200 chr3B 100.000 1743 0 0 6155 7897 451873721 451871979 0.000000e+00 3219.0
2 TraesCS3B01G281200 chr3B 98.050 872 12 2 7031 7897 451863800 451862929 0.000000e+00 1511.0
3 TraesCS3B01G281200 chr3B 81.242 789 95 38 7140 7895 160784608 160783840 8.830000e-164 588.0
4 TraesCS3B01G281200 chr3B 91.489 47 4 0 5367 5413 667717459 667717505 1.840000e-06 65.8
5 TraesCS3B01G281200 chr3B 100.000 31 0 0 4655 4685 451875106 451875076 3.080000e-04 58.4
6 TraesCS3B01G281200 chr3B 100.000 31 0 0 4770 4800 451875221 451875191 3.080000e-04 58.4
7 TraesCS3B01G281200 chr3A 93.195 3512 143 38 345 3821 471371568 471368118 0.000000e+00 5073.0
8 TraesCS3B01G281200 chr3A 90.331 755 58 9 3838 4581 471368130 471367380 0.000000e+00 976.0
9 TraesCS3B01G281200 chr3A 87.281 857 62 20 6178 7025 471365932 471365114 0.000000e+00 935.0
10 TraesCS3B01G281200 chr3A 89.665 358 24 4 4798 5146 471367198 471366845 2.020000e-120 444.0
11 TraesCS3B01G281200 chr3A 89.017 346 24 8 1 345 471372191 471371859 4.410000e-112 416.0
12 TraesCS3B01G281200 chr3A 82.222 360 39 14 5452 5807 471366537 471366199 3.610000e-73 287.0
13 TraesCS3B01G281200 chr3A 91.270 126 8 3 4604 4727 471367327 471367203 1.360000e-37 169.0
14 TraesCS3B01G281200 chr3D 90.378 2484 172 34 2294 4727 352798320 352795854 0.000000e+00 3201.0
15 TraesCS3B01G281200 chr3D 92.170 1392 46 24 195 1548 352802831 352801465 0.000000e+00 1908.0
16 TraesCS3B01G281200 chr3D 87.116 846 64 20 6178 7015 352794550 352793742 0.000000e+00 917.0
17 TraesCS3B01G281200 chr3D 86.721 738 61 21 1592 2305 352801462 352800738 0.000000e+00 785.0
18 TraesCS3B01G281200 chr3D 89.385 358 25 5 4798 5146 352795849 352795496 9.410000e-119 438.0
19 TraesCS3B01G281200 chr3D 87.599 379 26 8 5450 5807 352795193 352794815 3.410000e-113 420.0
20 TraesCS3B01G281200 chr3D 93.878 49 3 0 5403 5451 541598266 541598218 3.060000e-09 75.0
21 TraesCS3B01G281200 chr3D 100.000 29 0 0 5426 5454 413349979 413349951 4.000000e-03 54.7
22 TraesCS3B01G281200 chr1B 98.050 872 10 4 7031 7897 343355047 343354178 0.000000e+00 1509.0
23 TraesCS3B01G281200 chr1B 97.824 873 12 4 7031 7897 343364096 343363225 0.000000e+00 1500.0
24 TraesCS3B01G281200 chr1B 95.035 866 29 8 7042 7897 366356020 366355159 0.000000e+00 1349.0
25 TraesCS3B01G281200 chr1B 94.527 877 35 8 7031 7897 366347588 366346715 0.000000e+00 1341.0
26 TraesCS3B01G281200 chr1B 90.385 52 5 0 5384 5435 156593030 156593081 1.420000e-07 69.4
27 TraesCS3B01G281200 chr7A 95.434 876 29 7 7031 7897 112889342 112890215 0.000000e+00 1386.0
28 TraesCS3B01G281200 chr7A 94.989 878 30 11 7031 7897 112898401 112899275 0.000000e+00 1365.0
29 TraesCS3B01G281200 chr7A 86.885 61 8 0 5364 5424 732467562 732467622 1.420000e-07 69.4
30 TraesCS3B01G281200 chr7A 97.143 35 1 0 5418 5452 34787572 34787538 8.560000e-05 60.2
31 TraesCS3B01G281200 chr7B 92.947 879 42 12 7031 7897 336522858 336521988 0.000000e+00 1262.0
32 TraesCS3B01G281200 chr7B 97.059 34 1 0 5418 5451 62852543 62852510 3.080000e-04 58.4
33 TraesCS3B01G281200 chr2B 96.122 722 21 4 7031 7745 359021875 359021154 0.000000e+00 1171.0
34 TraesCS3B01G281200 chrUn 77.907 344 55 10 363 699 93650966 93651295 2.250000e-45 195.0
35 TraesCS3B01G281200 chr5A 83.333 138 19 2 4057 4194 375872854 375872721 2.990000e-24 124.0
36 TraesCS3B01G281200 chr5A 96.970 33 1 0 5419 5451 539948783 539948751 1.000000e-03 56.5
37 TraesCS3B01G281200 chr5D 79.259 135 20 2 4058 4191 284145576 284145449 3.930000e-13 87.9
38 TraesCS3B01G281200 chr2D 84.444 90 8 6 5367 5453 14774458 14774544 5.080000e-12 84.2
39 TraesCS3B01G281200 chr1D 95.238 42 2 0 5383 5424 393747473 393747514 5.110000e-07 67.6
40 TraesCS3B01G281200 chr4D 76.429 140 21 9 4058 4194 58285334 58285204 1.840000e-06 65.8
41 TraesCS3B01G281200 chr4B 80.645 93 10 6 5365 5453 653746109 653746021 1.840000e-06 65.8
42 TraesCS3B01G281200 chr4A 81.481 81 11 4 5373 5451 58913225 58913147 6.620000e-06 63.9
43 TraesCS3B01G281200 chr7D 97.059 34 1 0 5418 5451 375975906 375975939 3.080000e-04 58.4
44 TraesCS3B01G281200 chr6A 78.571 98 13 8 5359 5453 537004425 537004333 3.080000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G281200 chr3B 451871979 451879875 7896 True 6987.500000 10756 100.000000 1 7897 2 chr3B.!!$R3 7896
1 TraesCS3B01G281200 chr3B 451862929 451863800 871 True 1511.000000 1511 98.050000 7031 7897 1 chr3B.!!$R2 866
2 TraesCS3B01G281200 chr3B 160783840 160784608 768 True 588.000000 588 81.242000 7140 7895 1 chr3B.!!$R1 755
3 TraesCS3B01G281200 chr3A 471365114 471372191 7077 True 1185.714286 5073 88.997286 1 7025 7 chr3A.!!$R1 7024
4 TraesCS3B01G281200 chr3D 352793742 352802831 9089 True 1278.166667 3201 88.894833 195 7015 6 chr3D.!!$R3 6820
5 TraesCS3B01G281200 chr1B 343354178 343355047 869 True 1509.000000 1509 98.050000 7031 7897 1 chr1B.!!$R1 866
6 TraesCS3B01G281200 chr1B 343363225 343364096 871 True 1500.000000 1500 97.824000 7031 7897 1 chr1B.!!$R2 866
7 TraesCS3B01G281200 chr1B 366355159 366356020 861 True 1349.000000 1349 95.035000 7042 7897 1 chr1B.!!$R4 855
8 TraesCS3B01G281200 chr1B 366346715 366347588 873 True 1341.000000 1341 94.527000 7031 7897 1 chr1B.!!$R3 866
9 TraesCS3B01G281200 chr7A 112889342 112890215 873 False 1386.000000 1386 95.434000 7031 7897 1 chr7A.!!$F1 866
10 TraesCS3B01G281200 chr7A 112898401 112899275 874 False 1365.000000 1365 94.989000 7031 7897 1 chr7A.!!$F2 866
11 TraesCS3B01G281200 chr7B 336521988 336522858 870 True 1262.000000 1262 92.947000 7031 7897 1 chr7B.!!$R2 866
12 TraesCS3B01G281200 chr2B 359021154 359021875 721 True 1171.000000 1171 96.122000 7031 7745 1 chr2B.!!$R1 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.101759 CGGAAATTGGCAGCATGAGG 59.898 55.000 0.00 0.0 39.69 3.86 F
307 309 0.107017 ACTGCGAATGCCTATTGCCT 60.107 50.000 0.00 0.0 41.78 4.75 F
867 1174 0.173708 GGTAGTGTGAGCCTTCGAGG 59.826 60.000 0.00 0.0 38.80 4.63 F
952 1260 0.322648 ATCCAAGCTTGCAAAAGCCC 59.677 50.000 21.43 0.0 46.61 5.19 F
1527 1868 0.396278 CCTGCTTCCCCATTCCCTTC 60.396 60.000 0.00 0.0 0.00 3.46 F
1561 1902 0.526954 CCCGATTACGCGCAGTTACT 60.527 55.000 5.73 0.0 38.29 2.24 F
3164 5977 0.243365 TTGCCATCGGTGTTGCATTC 59.757 50.000 0.27 0.0 33.08 2.67 F
3785 6599 1.338973 CACTTGCTGAGTTGCCATTGT 59.661 47.619 0.00 0.0 36.10 2.71 F
4555 7381 0.239347 CCTTTTTGCTGCTGAGACCG 59.761 55.000 0.00 0.0 0.00 4.79 F
6394 9538 0.035881 TGGCCTCAGCTTCAGTTCTG 59.964 55.000 3.32 0.0 39.73 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1527 1868 0.243907 TCGGGCGAGAAGAGAAACAG 59.756 55.000 0.00 0.00 0.00 3.16 R
1565 1906 0.472044 TGCGGCATCCTAATAAGGCA 59.528 50.000 0.00 0.00 43.31 4.75 R
2348 5148 1.127343 AGCAGGCTAGAATCTGGGTC 58.873 55.000 0.00 0.00 0.00 4.46 R
2780 5586 2.635427 TGGGTCACTGCATAACTGTACA 59.365 45.455 0.00 0.00 0.00 2.90 R
3145 5958 0.243365 GAATGCAACACCGATGGCAA 59.757 50.000 0.00 0.00 40.02 4.52 R
3529 6343 0.322322 ACTTGGAATCGCCGGTAACA 59.678 50.000 1.90 0.00 40.66 2.41 R
4417 7236 0.251341 ACCCATGTTCCTGCTTCACC 60.251 55.000 0.00 0.00 0.00 4.02 R
5535 8500 0.250901 AAAATGCGACAGTGGAGCCT 60.251 50.000 9.16 0.00 0.00 4.58 R
6488 9632 0.108089 TTAGGTAGGCGCGCAATCAA 60.108 50.000 34.42 15.20 0.00 2.57 R
7402 10561 5.783100 ATTGACTTTGCAAAATTATGCCG 57.217 34.783 13.84 1.28 45.83 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.202050 GCTAATTCATGGCGATGGTTTCTT 60.202 41.667 8.98 0.00 0.00 2.52
37 38 5.008613 GCTAATTCATGGCGATGGTTTCTTA 59.991 40.000 8.98 0.52 0.00 2.10
48 49 2.243810 TGGTTTCTTAATGTGGTGGGC 58.756 47.619 0.00 0.00 0.00 5.36
67 68 0.176219 CTGCTCTCTCTCCCTGCTTG 59.824 60.000 0.00 0.00 0.00 4.01
83 84 0.826062 CTTGAAATGTCCATGCCCCC 59.174 55.000 0.00 0.00 0.00 5.40
84 85 0.413037 TTGAAATGTCCATGCCCCCT 59.587 50.000 0.00 0.00 0.00 4.79
123 124 4.736793 CGTTTACTAATACGGACGAGCATT 59.263 41.667 0.00 0.00 34.30 3.56
124 125 5.230726 CGTTTACTAATACGGACGAGCATTT 59.769 40.000 0.00 0.00 34.30 2.32
125 126 6.408428 GTTTACTAATACGGACGAGCATTTG 58.592 40.000 0.00 0.00 0.00 2.32
126 127 2.864343 ACTAATACGGACGAGCATTTGC 59.136 45.455 0.00 0.00 42.49 3.68
156 157 2.331893 CGGACGGAAATTGGCAGCA 61.332 57.895 0.00 0.00 0.00 4.41
160 161 0.813184 ACGGAAATTGGCAGCATGAG 59.187 50.000 0.00 0.00 39.69 2.90
161 162 0.101759 CGGAAATTGGCAGCATGAGG 59.898 55.000 0.00 0.00 39.69 3.86
173 174 7.073457 TGGCAGCATGAGGTAAATATACTAA 57.927 36.000 0.00 0.00 39.69 2.24
174 175 7.689299 TGGCAGCATGAGGTAAATATACTAAT 58.311 34.615 0.00 0.00 39.69 1.73
175 176 8.821817 TGGCAGCATGAGGTAAATATACTAATA 58.178 33.333 0.00 0.00 39.69 0.98
178 179 9.601217 CAGCATGAGGTAAATATACTAATACCC 57.399 37.037 0.00 0.00 39.69 3.69
179 180 8.475639 AGCATGAGGTAAATATACTAATACCCG 58.524 37.037 0.00 0.00 38.86 5.28
180 181 8.472413 GCATGAGGTAAATATACTAATACCCGA 58.528 37.037 0.00 0.00 38.86 5.14
183 184 9.193806 TGAGGTAAATATACTAATACCCGATCC 57.806 37.037 0.00 0.00 38.86 3.36
184 185 8.230472 AGGTAAATATACTAATACCCGATCCG 57.770 38.462 0.00 0.00 38.86 4.18
185 186 8.055181 AGGTAAATATACTAATACCCGATCCGA 58.945 37.037 0.00 0.00 38.86 4.55
186 187 8.686334 GGTAAATATACTAATACCCGATCCGAA 58.314 37.037 0.00 0.00 33.25 4.30
302 304 1.595382 GCGGACTGCGAATGCCTAT 60.595 57.895 0.00 0.00 41.78 2.57
303 305 1.160329 GCGGACTGCGAATGCCTATT 61.160 55.000 0.00 0.00 41.78 1.73
304 306 0.583438 CGGACTGCGAATGCCTATTG 59.417 55.000 0.00 0.00 41.78 1.90
305 307 0.308993 GGACTGCGAATGCCTATTGC 59.691 55.000 0.00 0.00 41.78 3.56
306 308 0.308993 GACTGCGAATGCCTATTGCC 59.691 55.000 0.00 0.00 41.78 4.52
307 309 0.107017 ACTGCGAATGCCTATTGCCT 60.107 50.000 0.00 0.00 41.78 4.75
308 310 1.140852 ACTGCGAATGCCTATTGCCTA 59.859 47.619 0.00 0.00 41.78 3.93
396 691 2.832643 TGACCGGAATAGTGGTAGGA 57.167 50.000 9.46 0.00 38.99 2.94
402 697 3.386726 CCGGAATAGTGGTAGGATCAACA 59.613 47.826 0.00 0.00 0.00 3.33
803 1107 1.075212 TGCCAGGGTGATTGATGACAA 59.925 47.619 0.00 0.00 40.42 3.18
813 1117 2.291209 TTGATGACAACATGGTGGCT 57.709 45.000 19.55 2.80 36.82 4.75
829 1133 1.301401 GCTACGTGCCCAGTGTCAA 60.301 57.895 0.00 0.00 35.15 3.18
836 1140 0.822944 TGCCCAGTGTCAATGTGTGG 60.823 55.000 0.00 0.00 0.00 4.17
867 1174 0.173708 GGTAGTGTGAGCCTTCGAGG 59.826 60.000 0.00 0.00 38.80 4.63
929 1237 1.358725 GCTGAATGTACGAGCGGCAA 61.359 55.000 1.45 0.00 33.01 4.52
948 1256 1.422531 ACCCATCCAAGCTTGCAAAA 58.577 45.000 21.43 6.25 0.00 2.44
949 1257 1.345415 ACCCATCCAAGCTTGCAAAAG 59.655 47.619 21.43 11.14 0.00 2.27
952 1260 0.322648 ATCCAAGCTTGCAAAAGCCC 59.677 50.000 21.43 0.00 46.61 5.19
966 1274 4.481195 GCCCAAAGCAGAGACACA 57.519 55.556 0.00 0.00 42.97 3.72
968 1276 1.251251 GCCCAAAGCAGAGACACAAT 58.749 50.000 0.00 0.00 42.97 2.71
970 1278 2.421424 GCCCAAAGCAGAGACACAATAG 59.579 50.000 0.00 0.00 42.97 1.73
971 1279 3.869912 GCCCAAAGCAGAGACACAATAGA 60.870 47.826 0.00 0.00 42.97 1.98
973 1281 4.946157 CCCAAAGCAGAGACACAATAGAAT 59.054 41.667 0.00 0.00 0.00 2.40
976 1284 7.284034 CCCAAAGCAGAGACACAATAGAATAAT 59.716 37.037 0.00 0.00 0.00 1.28
977 1285 8.127327 CCAAAGCAGAGACACAATAGAATAATG 58.873 37.037 0.00 0.00 0.00 1.90
1089 1405 1.004918 CGAGAAAAGGACGCCACCT 60.005 57.895 0.00 0.00 42.69 4.00
1090 1406 1.014564 CGAGAAAAGGACGCCACCTC 61.015 60.000 0.00 0.00 39.62 3.85
1091 1407 0.673956 GAGAAAAGGACGCCACCTCC 60.674 60.000 0.00 0.00 39.62 4.30
1092 1408 1.128188 AGAAAAGGACGCCACCTCCT 61.128 55.000 0.00 0.00 40.11 3.69
1094 1410 1.128188 AAAAGGACGCCACCTCCTCT 61.128 55.000 0.00 0.00 37.13 3.69
1100 1416 2.766229 GCCACCTCCTCTCCTCCC 60.766 72.222 0.00 0.00 0.00 4.30
1102 1418 2.041405 CACCTCCTCTCCTCCCCC 60.041 72.222 0.00 0.00 0.00 5.40
1103 1419 2.204705 ACCTCCTCTCCTCCCCCT 60.205 66.667 0.00 0.00 0.00 4.79
1451 1792 1.227497 GATCAGCGGCTTCCTCCTG 60.227 63.158 0.00 0.00 0.00 3.86
1481 1822 4.479993 GCCGCCCTCATGCTCACT 62.480 66.667 0.00 0.00 0.00 3.41
1520 1861 2.361610 CGTTGCCTGCTTCCCCAT 60.362 61.111 0.00 0.00 0.00 4.00
1527 1868 0.396278 CCTGCTTCCCCATTCCCTTC 60.396 60.000 0.00 0.00 0.00 3.46
1550 1891 2.858941 GTTTCTCTTCTCGCCCGATTAC 59.141 50.000 0.00 0.00 0.00 1.89
1551 1892 0.661552 TCTCTTCTCGCCCGATTACG 59.338 55.000 0.00 0.00 39.43 3.18
1552 1893 0.935366 CTCTTCTCGCCCGATTACGC 60.935 60.000 0.00 0.00 38.29 4.42
1558 1899 3.192922 GCCCGATTACGCGCAGTT 61.193 61.111 5.73 0.00 41.99 3.16
1559 1900 1.879430 GCCCGATTACGCGCAGTTA 60.879 57.895 5.73 0.36 41.99 2.24
1560 1901 1.922189 CCCGATTACGCGCAGTTAC 59.078 57.895 5.73 0.00 38.29 2.50
1561 1902 0.526954 CCCGATTACGCGCAGTTACT 60.527 55.000 5.73 0.00 38.29 2.24
1562 1903 0.844503 CCGATTACGCGCAGTTACTC 59.155 55.000 5.73 0.00 38.29 2.59
1563 1904 1.541475 CGATTACGCGCAGTTACTCA 58.459 50.000 5.73 0.00 0.00 3.41
1564 1905 1.252015 CGATTACGCGCAGTTACTCAC 59.748 52.381 5.73 0.00 0.00 3.51
1565 1906 2.527100 GATTACGCGCAGTTACTCACT 58.473 47.619 5.73 0.00 35.35 3.41
1587 1928 2.783135 CCTTATTAGGATGCCGCATGT 58.217 47.619 11.49 0.00 45.05 3.21
1601 1942 1.430632 CATGTTGACTGATGCGGCC 59.569 57.895 0.00 0.00 0.00 6.13
1606 1947 0.537143 TTGACTGATGCGGCCTTTGT 60.537 50.000 0.00 0.00 0.00 2.83
1768 2109 4.402793 CCATAGGTGAGCTACAGTACAGTT 59.597 45.833 0.00 0.00 0.00 3.16
1792 2133 9.953825 GTTACAAGTTCGTCATCATAGTTTTAG 57.046 33.333 0.00 0.00 0.00 1.85
1793 2134 9.701098 TTACAAGTTCGTCATCATAGTTTTAGT 57.299 29.630 0.00 0.00 0.00 2.24
1794 2135 8.603242 ACAAGTTCGTCATCATAGTTTTAGTT 57.397 30.769 0.00 0.00 0.00 2.24
1795 2136 9.052759 ACAAGTTCGTCATCATAGTTTTAGTTT 57.947 29.630 0.00 0.00 0.00 2.66
1796 2137 9.878599 CAAGTTCGTCATCATAGTTTTAGTTTT 57.121 29.630 0.00 0.00 0.00 2.43
1847 2210 5.183904 GGATTGGTTAATGGCATTAGGCTAG 59.816 44.000 18.52 0.00 44.01 3.42
1848 2211 3.486383 TGGTTAATGGCATTAGGCTAGC 58.514 45.455 18.52 6.04 44.01 3.42
1849 2212 3.117701 TGGTTAATGGCATTAGGCTAGCA 60.118 43.478 18.24 16.19 44.01 3.49
1850 2213 4.082125 GGTTAATGGCATTAGGCTAGCAT 58.918 43.478 18.24 12.98 44.01 3.79
2302 5102 7.272037 ACACGTCAATTGGAAAGAACTAATT 57.728 32.000 5.42 0.00 32.69 1.40
2374 5174 4.769488 CCAGATTCTAGCCTGCTACTGATA 59.231 45.833 13.21 0.00 0.00 2.15
2471 5271 4.498009 CGAACAAGAGTTGGTGAGCAATTT 60.498 41.667 0.00 0.00 38.30 1.82
2594 5397 7.067496 TCAGGCATTTTGTTTGGGTAATTTA 57.933 32.000 0.00 0.00 0.00 1.40
2644 5448 9.431887 TGTGTTTACAGCCTTATCTACTTAAAG 57.568 33.333 0.00 0.00 31.91 1.85
2646 5450 9.649167 TGTTTACAGCCTTATCTACTTAAAGAC 57.351 33.333 0.00 0.00 0.00 3.01
2679 5483 8.879427 ATTACTTAAACTCAGGCCTTATGTTT 57.121 30.769 22.83 22.83 35.43 2.83
2738 5544 9.503399 GGATTTACTTGGGAGTATACATTTAGG 57.497 37.037 5.50 0.00 38.14 2.69
2876 5684 7.291885 TCATCAGTGATCTCTAAGATGGGATTT 59.708 37.037 18.00 0.00 34.53 2.17
2948 5756 2.519622 TAGTGTGGCCTGCAGTGCT 61.520 57.895 17.60 9.59 0.00 4.40
3057 5868 1.786937 CAGCCCTGATACTCTGGAGT 58.213 55.000 8.36 8.36 45.02 3.85
3058 5869 2.950781 CAGCCCTGATACTCTGGAGTA 58.049 52.381 12.09 12.09 46.68 2.59
3059 5870 2.625790 CAGCCCTGATACTCTGGAGTAC 59.374 54.545 11.97 7.65 45.61 2.73
3065 5877 4.339814 CCTGATACTCTGGAGTACACTTCC 59.660 50.000 11.97 0.00 45.61 3.46
3078 5891 1.136891 ACACTTCCCTGCTTTTTGTGC 59.863 47.619 0.00 0.00 0.00 4.57
3080 5893 0.940991 CTTCCCTGCTTTTTGTGCGC 60.941 55.000 0.00 0.00 0.00 6.09
3093 5906 1.063649 GTGCGCTCTGGCATTGATG 59.936 57.895 9.73 0.00 45.99 3.07
3145 5958 9.189723 GTTTGTAGAAAACGTAGAGATGTTACT 57.810 33.333 0.00 0.00 33.49 2.24
3162 5975 0.895100 ACTTGCCATCGGTGTTGCAT 60.895 50.000 0.27 0.00 33.08 3.96
3164 5977 0.243365 TTGCCATCGGTGTTGCATTC 59.757 50.000 0.27 0.00 33.08 2.67
3177 5990 6.690957 CGGTGTTGCATTCGTTAATGATTTAT 59.309 34.615 0.00 0.00 44.50 1.40
3183 5996 7.257003 TGCATTCGTTAATGATTTATGCACTT 58.743 30.769 22.77 0.00 44.50 3.16
3281 6094 5.627499 TTGTTTGGCTGTCATACAATCTC 57.373 39.130 13.06 0.00 40.58 2.75
3331 6144 2.421073 TCAGCTGATTGCATTCCTTTCG 59.579 45.455 13.74 0.00 45.94 3.46
3338 6151 4.394920 TGATTGCATTCCTTTCGTAGAACC 59.605 41.667 6.16 0.00 45.90 3.62
3357 6170 1.533513 TGCACATGTGGGCCATTGT 60.534 52.632 26.55 14.52 45.73 2.71
3359 6172 1.592743 CACATGTGGGCCATTGTGG 59.407 57.895 30.27 18.70 41.55 4.17
3360 6173 1.610086 ACATGTGGGCCATTGTGGG 60.610 57.895 20.33 6.65 38.19 4.61
3376 6189 4.046286 TGTGGGGACATTTAAAGCAGAT 57.954 40.909 0.00 0.00 46.14 2.90
3418 6231 2.349275 GCATCAAATTGTTGGAATGGCG 59.651 45.455 6.23 0.00 35.29 5.69
3422 6235 2.988493 CAAATTGTTGGAATGGCGTGAG 59.012 45.455 0.00 0.00 0.00 3.51
3441 6255 2.154462 AGGGATCGTTGCTTCTTGTTG 58.846 47.619 0.00 0.00 0.00 3.33
3493 6307 7.301068 CTTGAACAAGGAGAACTGTATCATC 57.699 40.000 6.66 0.00 34.87 2.92
3494 6308 5.734720 TGAACAAGGAGAACTGTATCATCC 58.265 41.667 0.00 0.00 0.00 3.51
3495 6309 4.762289 ACAAGGAGAACTGTATCATCCC 57.238 45.455 0.00 0.00 0.00 3.85
3496 6310 4.104086 ACAAGGAGAACTGTATCATCCCA 58.896 43.478 0.00 0.00 0.00 4.37
3497 6311 4.723789 ACAAGGAGAACTGTATCATCCCAT 59.276 41.667 0.00 0.00 0.00 4.00
3514 6328 7.124721 TCATCCCATTCATCTTTTTCCATGTA 58.875 34.615 0.00 0.00 0.00 2.29
3529 6343 2.557924 CCATGTATGCCACAACTGTTGT 59.442 45.455 19.85 19.85 46.75 3.32
3551 6365 3.002102 GTTACCGGCGATTCCAAGTTTA 58.998 45.455 9.30 0.00 34.01 2.01
3589 6403 2.532532 ATGGTGGCAGGTGAGCAGT 61.533 57.895 0.00 0.00 35.83 4.40
3592 6406 1.518903 GGTGGCAGGTGAGCAGTTTC 61.519 60.000 0.00 0.00 35.83 2.78
3629 6443 3.746949 GAGTCCCTGCATGGAGGCG 62.747 68.421 26.95 19.37 38.35 5.52
3646 6460 1.536331 GGCGTTCTAGAGGTATCTCCG 59.464 57.143 0.00 0.00 40.83 4.63
3648 6462 2.031857 GCGTTCTAGAGGTATCTCCGTG 60.032 54.545 0.00 0.00 40.83 4.94
3785 6599 1.338973 CACTTGCTGAGTTGCCATTGT 59.661 47.619 0.00 0.00 36.10 2.71
3804 6618 3.127589 TGTACAATGAACGATATGGCCG 58.872 45.455 0.00 0.00 0.00 6.13
3827 6641 4.804139 GTCTTGGTATGGACGATAACACAG 59.196 45.833 0.00 0.00 33.70 3.66
3859 6673 5.303971 GTGGTAGGAAGATGAATGAGATGG 58.696 45.833 0.00 0.00 0.00 3.51
3860 6674 4.971282 TGGTAGGAAGATGAATGAGATGGT 59.029 41.667 0.00 0.00 0.00 3.55
3907 6725 5.317600 TGTCCTGCTCTATAGAGACTCAT 57.682 43.478 30.06 0.00 44.74 2.90
3984 6802 3.115390 CCAAATCCTCTTACTCCCTCCA 58.885 50.000 0.00 0.00 0.00 3.86
4019 6837 1.559682 TCTGGCATGGGAACTTAGGTC 59.440 52.381 0.00 0.00 0.00 3.85
4029 6847 5.484715 TGGGAACTTAGGTCGTCAATTTAG 58.515 41.667 0.00 0.00 0.00 1.85
4033 6851 6.255237 GGAACTTAGGTCGTCAATTTAGCTAC 59.745 42.308 0.00 0.00 0.00 3.58
4054 6872 5.215252 ACTGAAGCACGTATAATATGCCT 57.785 39.130 0.00 0.00 40.33 4.75
4144 6962 6.401367 GCAGCATGTTTTTCGCTAATCAAATT 60.401 34.615 0.00 0.00 39.31 1.82
4165 6983 6.851222 ATTGAAGACCTAAATATCTGTGCG 57.149 37.500 0.00 0.00 0.00 5.34
4170 6988 4.402793 AGACCTAAATATCTGTGCGTGACT 59.597 41.667 0.00 0.00 0.00 3.41
4178 6996 7.891183 AATATCTGTGCGTGACTTATATTCC 57.109 36.000 0.00 0.00 0.00 3.01
4187 7005 5.569630 GCGTGACTTATATTCCCATCCAGAT 60.570 44.000 0.00 0.00 0.00 2.90
4220 7038 6.998968 AAAATCTGTCAAATTGGCAAACAA 57.001 29.167 3.01 0.00 44.54 2.83
4248 7066 5.684184 CACATATGCTGCACAATGACATTAC 59.316 40.000 25.17 0.00 0.00 1.89
4270 7088 2.851263 ACCGAGGTGCATTAGTTCAA 57.149 45.000 0.00 0.00 0.00 2.69
4315 7133 9.729023 TTATGTAGTGTTTCTTGAAAACATGTG 57.271 29.630 15.61 0.00 41.51 3.21
4318 7136 5.343249 AGTGTTTCTTGAAAACATGTGCTC 58.657 37.500 0.00 0.00 41.51 4.26
4320 7138 4.142491 TGTTTCTTGAAAACATGTGCTCGT 60.142 37.500 0.00 0.00 35.45 4.18
4323 7141 5.743026 TCTTGAAAACATGTGCTCGTTAA 57.257 34.783 0.00 0.00 0.00 2.01
4335 7153 7.172532 ACATGTGCTCGTTAATCAAACTCTTAA 59.827 33.333 0.00 0.00 35.81 1.85
4336 7154 7.117241 TGTGCTCGTTAATCAAACTCTTAAG 57.883 36.000 0.00 0.00 35.81 1.85
4341 7159 7.626452 GCTCGTTAATCAAACTCTTAAGCCAAT 60.626 37.037 0.00 0.00 35.81 3.16
4350 7168 7.882791 TCAAACTCTTAAGCCAATCTTATGACA 59.117 33.333 0.00 0.00 36.86 3.58
4361 7179 5.885352 CCAATCTTATGACACCACCATAACA 59.115 40.000 0.00 0.00 34.10 2.41
4445 7268 1.073923 AGGAACATGGGTGTGACCTTC 59.926 52.381 0.00 0.00 40.57 3.46
4455 7278 0.321564 TGTGACCTTCAATGGAGCCG 60.322 55.000 0.00 0.00 0.00 5.52
4489 7312 8.196802 TGTCACATAATGTTTGCTGATACTAC 57.803 34.615 0.00 0.00 0.00 2.73
4548 7374 1.068127 CACTGCTTCCTTTTTGCTGCT 59.932 47.619 0.00 0.00 0.00 4.24
4555 7381 0.239347 CCTTTTTGCTGCTGAGACCG 59.761 55.000 0.00 0.00 0.00 4.79
4558 7384 1.442769 TTTTGCTGCTGAGACCGATC 58.557 50.000 0.00 0.00 0.00 3.69
4565 7391 3.873952 GCTGCTGAGACCGATCTTTTTAT 59.126 43.478 0.00 0.00 34.34 1.40
4591 7417 9.868277 TTCTAAAAAGAGAAACTGATTTTGCAA 57.132 25.926 0.00 0.00 32.46 4.08
4592 7418 9.868277 TCTAAAAAGAGAAACTGATTTTGCAAA 57.132 25.926 8.05 8.05 0.00 3.68
4700 7557 8.578308 CAATTTGTTTTCTCAGATTGCACTAA 57.422 30.769 0.00 0.00 34.74 2.24
4713 7570 6.942005 CAGATTGCACTAATATATTGGACCCA 59.058 38.462 15.06 6.35 0.00 4.51
4717 7574 7.090319 TGCACTAATATATTGGACCCATCTT 57.910 36.000 15.06 0.00 0.00 2.40
4787 7644 9.907229 TTGGACCCATTTTAAAATTTAGTTGTT 57.093 25.926 10.77 0.00 0.00 2.83
4788 7645 9.907229 TGGACCCATTTTAAAATTTAGTTGTTT 57.093 25.926 10.77 0.00 0.00 2.83
4790 7647 9.658475 GACCCATTTTAAAATTTAGTTGTTTGC 57.342 29.630 10.77 0.00 0.00 3.68
4791 7648 9.178758 ACCCATTTTAAAATTTAGTTGTTTGCA 57.821 25.926 10.77 0.00 0.00 4.08
4815 7672 9.713740 GCAATTTGTTTCAACATTTGTCATAAA 57.286 25.926 13.32 0.00 38.95 1.40
4855 7712 3.225104 TCAATGCTTCTGCTCTGGTTTT 58.775 40.909 0.00 0.00 40.48 2.43
4856 7713 3.005050 TCAATGCTTCTGCTCTGGTTTTG 59.995 43.478 0.00 0.00 40.48 2.44
4857 7714 0.670162 TGCTTCTGCTCTGGTTTTGC 59.330 50.000 0.00 0.00 40.48 3.68
4858 7715 0.957362 GCTTCTGCTCTGGTTTTGCT 59.043 50.000 0.00 0.00 36.03 3.91
4861 7718 3.378339 CTTCTGCTCTGGTTTTGCTTTG 58.622 45.455 0.00 0.00 0.00 2.77
4875 7741 7.014711 TGGTTTTGCTTTGTATTCCACTAATGA 59.985 33.333 0.00 0.00 0.00 2.57
4881 7747 7.280876 TGCTTTGTATTCCACTAATGAGACATC 59.719 37.037 0.00 0.00 0.00 3.06
4882 7748 7.517417 GCTTTGTATTCCACTAATGAGACATCG 60.517 40.741 0.00 0.00 0.00 3.84
4886 7752 1.536922 CCACTAATGAGACATCGCGCT 60.537 52.381 5.56 0.00 0.00 5.92
4935 7801 0.318614 GGGCAATTGTTGTGTCCACG 60.319 55.000 7.40 0.00 0.00 4.94
5013 7879 1.548357 AACATCTGCCGACAGCTCCT 61.548 55.000 0.00 0.00 44.10 3.69
5051 7917 5.158141 TCTCCTGCTTGGATGGTAATATCT 58.842 41.667 0.00 0.00 45.16 1.98
5086 7952 4.201485 CGTGTTTTTCTTTCTGTGTTGTGC 60.201 41.667 0.00 0.00 0.00 4.57
5093 7959 4.311606 TCTTTCTGTGTTGTGCGCTATTA 58.688 39.130 9.73 0.00 0.00 0.98
5094 7960 4.935205 TCTTTCTGTGTTGTGCGCTATTAT 59.065 37.500 9.73 0.00 0.00 1.28
5097 7963 3.100817 CTGTGTTGTGCGCTATTATTGC 58.899 45.455 9.73 0.00 0.00 3.56
5098 7964 2.746904 TGTGTTGTGCGCTATTATTGCT 59.253 40.909 9.73 0.00 0.00 3.91
5099 7965 3.190327 TGTGTTGTGCGCTATTATTGCTT 59.810 39.130 9.73 0.00 0.00 3.91
5100 7966 3.543494 GTGTTGTGCGCTATTATTGCTTG 59.457 43.478 9.73 0.00 0.00 4.01
5101 7967 3.108144 GTTGTGCGCTATTATTGCTTGG 58.892 45.455 9.73 0.00 0.00 3.61
5102 7968 2.637947 TGTGCGCTATTATTGCTTGGA 58.362 42.857 9.73 0.00 0.00 3.53
5103 7969 3.213506 TGTGCGCTATTATTGCTTGGAT 58.786 40.909 9.73 0.00 0.00 3.41
5104 7970 3.003585 TGTGCGCTATTATTGCTTGGATG 59.996 43.478 9.73 0.00 0.00 3.51
5105 7971 2.553602 TGCGCTATTATTGCTTGGATGG 59.446 45.455 9.73 0.00 0.00 3.51
5106 7972 2.554032 GCGCTATTATTGCTTGGATGGT 59.446 45.455 0.00 0.00 0.00 3.55
5107 7973 3.751175 GCGCTATTATTGCTTGGATGGTA 59.249 43.478 0.00 0.00 0.00 3.25
5110 7976 6.093495 GCGCTATTATTGCTTGGATGGTAATA 59.907 38.462 0.00 0.00 0.00 0.98
5112 7978 8.338259 CGCTATTATTGCTTGGATGGTAATATC 58.662 37.037 0.00 0.00 0.00 1.63
5121 7987 6.151817 GCTTGGATGGTAATATCATTCCCTTC 59.848 42.308 0.00 0.00 0.00 3.46
5132 7998 1.283029 CATTCCCTTCTCCCTGCTTCA 59.717 52.381 0.00 0.00 0.00 3.02
5136 8002 1.208293 CCCTTCTCCCTGCTTCAGTAC 59.792 57.143 0.00 0.00 0.00 2.73
5146 8012 4.888239 CCCTGCTTCAGTACTTAGCTACTA 59.112 45.833 21.31 6.40 35.93 1.82
5147 8013 5.536916 CCCTGCTTCAGTACTTAGCTACTAT 59.463 44.000 21.31 0.00 35.93 2.12
5148 8014 6.715718 CCCTGCTTCAGTACTTAGCTACTATA 59.284 42.308 21.31 5.58 35.93 1.31
5149 8015 7.230913 CCCTGCTTCAGTACTTAGCTACTATAA 59.769 40.741 21.31 5.04 35.93 0.98
5150 8016 8.798402 CCTGCTTCAGTACTTAGCTACTATAAT 58.202 37.037 21.31 0.00 35.93 1.28
5151 8017 9.619316 CTGCTTCAGTACTTAGCTACTATAATG 57.381 37.037 21.31 0.00 35.93 1.90
5152 8018 9.132923 TGCTTCAGTACTTAGCTACTATAATGT 57.867 33.333 21.31 0.00 35.93 2.71
5156 8022 9.770097 TCAGTACTTAGCTACTATAATGTACGT 57.230 33.333 0.00 0.00 35.56 3.57
5185 8145 3.940209 TTTCAATGCCTGCACCTTTAG 57.060 42.857 0.00 0.00 0.00 1.85
5190 8150 2.048603 GCCTGCACCTTTAGGGCTG 61.049 63.158 3.76 5.25 39.68 4.85
5217 8177 5.009911 GCATTGGCAATGTATCAGATAACCA 59.990 40.000 33.64 0.00 41.01 3.67
5221 8181 6.545567 TGGCAATGTATCAGATAACCATGAT 58.454 36.000 0.00 0.00 39.44 2.45
5244 8207 8.830580 TGATACTGTCTAAGCTATGAATTTTGC 58.169 33.333 0.00 0.00 0.00 3.68
5245 8208 6.442513 ACTGTCTAAGCTATGAATTTTGCC 57.557 37.500 0.00 0.00 0.00 4.52
5256 8219 6.704493 GCTATGAATTTTGCCATTGTGATCAT 59.296 34.615 0.00 0.00 0.00 2.45
5262 8225 1.565288 TGCCATTGTGATCATGAGGGA 59.435 47.619 13.98 6.40 0.00 4.20
5263 8226 2.228059 GCCATTGTGATCATGAGGGAG 58.772 52.381 13.98 0.00 0.00 4.30
5287 8250 2.455889 GTGGTGGGGTAGGGGGTA 59.544 66.667 0.00 0.00 0.00 3.69
5288 8251 1.997311 GTGGTGGGGTAGGGGGTAC 60.997 68.421 0.00 0.00 0.00 3.34
5304 8268 1.957186 TACGGCGGTGCAACACTTC 60.957 57.895 13.24 0.00 39.98 3.01
5343 8307 4.630644 AGTGATGATAGGCAATACTGGG 57.369 45.455 0.00 0.00 0.00 4.45
5346 8310 0.771127 TGATAGGCAATACTGGGGGC 59.229 55.000 0.00 0.00 0.00 5.80
5362 8326 1.448717 GGCGGCAGAGAACCTCTTC 60.449 63.158 3.07 0.00 38.99 2.87
5366 8330 1.548269 CGGCAGAGAACCTCTTCTTCT 59.452 52.381 0.00 0.00 38.99 2.85
5367 8331 2.755655 CGGCAGAGAACCTCTTCTTCTA 59.244 50.000 0.00 0.00 38.99 2.10
5368 8332 3.428316 CGGCAGAGAACCTCTTCTTCTAC 60.428 52.174 0.00 0.00 38.99 2.59
5369 8333 3.767131 GGCAGAGAACCTCTTCTTCTACT 59.233 47.826 0.00 0.00 38.99 2.57
5370 8334 4.951094 GGCAGAGAACCTCTTCTTCTACTA 59.049 45.833 0.00 0.00 38.99 1.82
5371 8335 5.596772 GGCAGAGAACCTCTTCTTCTACTAT 59.403 44.000 0.00 0.00 38.99 2.12
5372 8336 6.238925 GGCAGAGAACCTCTTCTTCTACTATC 60.239 46.154 0.00 0.00 38.99 2.08
5373 8337 6.546034 GCAGAGAACCTCTTCTTCTACTATCT 59.454 42.308 0.00 0.00 38.99 1.98
5374 8338 7.255139 GCAGAGAACCTCTTCTTCTACTATCTC 60.255 44.444 0.00 0.00 38.99 2.75
5375 8339 7.228706 CAGAGAACCTCTTCTTCTACTATCTCC 59.771 44.444 0.00 0.00 38.99 3.71
5376 8340 6.059484 AGAACCTCTTCTTCTACTATCTCCG 58.941 44.000 0.00 0.00 32.29 4.63
5377 8341 5.376756 ACCTCTTCTTCTACTATCTCCGT 57.623 43.478 0.00 0.00 0.00 4.69
5378 8342 5.370679 ACCTCTTCTTCTACTATCTCCGTC 58.629 45.833 0.00 0.00 0.00 4.79
5379 8343 4.758165 CCTCTTCTTCTACTATCTCCGTCC 59.242 50.000 0.00 0.00 0.00 4.79
5380 8344 4.716794 TCTTCTTCTACTATCTCCGTCCC 58.283 47.826 0.00 0.00 0.00 4.46
5381 8345 4.165565 TCTTCTTCTACTATCTCCGTCCCA 59.834 45.833 0.00 0.00 0.00 4.37
5382 8346 4.515028 TCTTCTACTATCTCCGTCCCAA 57.485 45.455 0.00 0.00 0.00 4.12
5383 8347 4.863548 TCTTCTACTATCTCCGTCCCAAA 58.136 43.478 0.00 0.00 0.00 3.28
5384 8348 5.266788 TCTTCTACTATCTCCGTCCCAAAA 58.733 41.667 0.00 0.00 0.00 2.44
5385 8349 5.897824 TCTTCTACTATCTCCGTCCCAAAAT 59.102 40.000 0.00 0.00 0.00 1.82
5386 8350 7.064866 TCTTCTACTATCTCCGTCCCAAAATA 58.935 38.462 0.00 0.00 0.00 1.40
5387 8351 7.728981 TCTTCTACTATCTCCGTCCCAAAATAT 59.271 37.037 0.00 0.00 0.00 1.28
5388 8352 8.945195 TTCTACTATCTCCGTCCCAAAATATA 57.055 34.615 0.00 0.00 0.00 0.86
5389 8353 8.945195 TCTACTATCTCCGTCCCAAAATATAA 57.055 34.615 0.00 0.00 0.00 0.98
5390 8354 9.021807 TCTACTATCTCCGTCCCAAAATATAAG 57.978 37.037 0.00 0.00 0.00 1.73
5391 8355 7.850935 ACTATCTCCGTCCCAAAATATAAGA 57.149 36.000 0.00 0.00 0.00 2.10
5392 8356 7.668492 ACTATCTCCGTCCCAAAATATAAGAC 58.332 38.462 0.00 0.00 0.00 3.01
5394 8358 4.403432 TCTCCGTCCCAAAATATAAGACGT 59.597 41.667 9.63 0.00 46.62 4.34
5395 8359 4.685924 TCCGTCCCAAAATATAAGACGTC 58.314 43.478 7.70 7.70 46.62 4.34
5396 8360 4.403432 TCCGTCCCAAAATATAAGACGTCT 59.597 41.667 13.58 13.58 46.62 4.18
5397 8361 5.105228 TCCGTCCCAAAATATAAGACGTCTT 60.105 40.000 31.70 31.70 46.62 3.01
5398 8362 5.583457 CCGTCCCAAAATATAAGACGTCTTT 59.417 40.000 33.82 22.67 46.62 2.52
5399 8363 6.456449 CCGTCCCAAAATATAAGACGTCTTTG 60.456 42.308 33.82 23.58 46.62 2.77
5400 8364 6.255950 GTCCCAAAATATAAGACGTCTTTGC 58.744 40.000 33.82 10.19 37.40 3.68
5401 8365 5.941058 TCCCAAAATATAAGACGTCTTTGCA 59.059 36.000 33.82 18.19 37.40 4.08
5402 8366 6.093495 TCCCAAAATATAAGACGTCTTTGCAG 59.907 38.462 33.82 17.97 37.40 4.41
5403 8367 6.128007 CCCAAAATATAAGACGTCTTTGCAGT 60.128 38.462 33.82 16.49 37.40 4.40
5404 8368 7.305474 CCAAAATATAAGACGTCTTTGCAGTT 58.695 34.615 33.82 20.69 37.40 3.16
5405 8369 7.481798 CCAAAATATAAGACGTCTTTGCAGTTC 59.518 37.037 33.82 0.00 37.40 3.01
5406 8370 7.667043 AAATATAAGACGTCTTTGCAGTTCA 57.333 32.000 33.82 15.23 37.40 3.18
5407 8371 7.667043 AATATAAGACGTCTTTGCAGTTCAA 57.333 32.000 33.82 14.50 37.40 2.69
5408 8372 7.849804 ATATAAGACGTCTTTGCAGTTCAAT 57.150 32.000 33.82 19.97 37.40 2.57
5409 8373 4.900635 AAGACGTCTTTGCAGTTCAATT 57.099 36.364 24.93 0.00 34.12 2.32
5410 8374 4.900635 AGACGTCTTTGCAGTTCAATTT 57.099 36.364 13.58 0.00 34.12 1.82
5411 8375 4.601019 AGACGTCTTTGCAGTTCAATTTG 58.399 39.130 13.58 0.00 34.12 2.32
5412 8376 4.335315 AGACGTCTTTGCAGTTCAATTTGA 59.665 37.500 13.58 0.00 34.12 2.69
5413 8377 4.992688 ACGTCTTTGCAGTTCAATTTGAA 58.007 34.783 7.74 7.74 34.12 2.69
5414 8378 8.568472 AAGACGTCTTTGCAGTTCAATTTGAAC 61.568 37.037 27.31 27.31 43.94 3.18
5444 8408 8.904099 AAAAAGTCTTATATTATGGGACGGAG 57.096 34.615 0.00 0.00 32.86 4.63
5445 8409 6.607004 AAGTCTTATATTATGGGACGGAGG 57.393 41.667 0.00 0.00 32.86 4.30
5446 8410 5.652324 AGTCTTATATTATGGGACGGAGGT 58.348 41.667 0.00 0.00 32.86 3.85
5447 8411 6.797707 AGTCTTATATTATGGGACGGAGGTA 58.202 40.000 0.00 0.00 32.86 3.08
5448 8412 6.890814 AGTCTTATATTATGGGACGGAGGTAG 59.109 42.308 0.00 0.00 32.86 3.18
5459 8423 1.893801 ACGGAGGTAGTATATGGCAGC 59.106 52.381 0.00 0.00 0.00 5.25
5475 8439 3.007723 TGGCAGCATCTCCTTGATAGATC 59.992 47.826 0.00 0.00 31.22 2.75
5482 8446 5.185635 GCATCTCCTTGATAGATCTAGCAGT 59.814 44.000 19.29 0.00 32.67 4.40
5483 8447 6.623486 CATCTCCTTGATAGATCTAGCAGTG 58.377 44.000 19.29 15.70 32.67 3.66
5526 8490 2.120909 GGGGATGGTTGTGCATCCG 61.121 63.158 0.00 0.00 46.21 4.18
5535 8500 2.123248 TTGTGCATCCGAGGCCAAGA 62.123 55.000 5.01 0.00 0.00 3.02
5573 8539 0.394192 TACACTTGCAGCACAGCTCT 59.606 50.000 0.00 0.00 36.40 4.09
5596 8562 1.270839 GGTTTGTACCAGCTGAGCAGA 60.271 52.381 17.39 3.32 44.36 4.26
5619 8585 0.108585 TGGGAAACAGTCACTGCCTC 59.891 55.000 4.13 1.08 34.37 4.70
5622 8588 1.808945 GGAAACAGTCACTGCCTCATG 59.191 52.381 4.13 0.00 34.37 3.07
5623 8589 1.198637 GAAACAGTCACTGCCTCATGC 59.801 52.381 4.13 0.00 41.77 4.06
5676 8661 0.616371 TTAGCCGCCTACAACCACAT 59.384 50.000 0.00 0.00 0.00 3.21
5686 8671 1.538047 ACAACCACATGCACCATCTC 58.462 50.000 0.00 0.00 0.00 2.75
5713 8698 3.397439 GCAGAGAGGGAGGCAGCA 61.397 66.667 0.00 0.00 0.00 4.41
5724 8709 2.224967 GGGAGGCAGCAATGGATAATCT 60.225 50.000 0.00 0.00 0.00 2.40
5742 8727 4.833478 ATCTCATGCAGGTCTAAAGTGT 57.167 40.909 0.00 0.00 0.00 3.55
5756 8741 2.949177 AAGTGTGTGAGGTGGCATTA 57.051 45.000 0.00 0.00 0.00 1.90
5761 8746 1.196808 GTGTGAGGTGGCATTAACGTG 59.803 52.381 0.00 0.00 0.00 4.49
5767 8752 0.609681 GTGGCATTAACGTGGGGGAA 60.610 55.000 0.00 0.00 0.00 3.97
5769 8754 1.035385 GGCATTAACGTGGGGGAAGG 61.035 60.000 0.00 0.00 0.00 3.46
5770 8755 0.323087 GCATTAACGTGGGGGAAGGT 60.323 55.000 0.00 0.00 0.00 3.50
5790 8775 1.075536 TGACAGTGCTGGAGTAGAGGA 59.924 52.381 4.11 0.00 34.19 3.71
5794 8779 0.827368 GTGCTGGAGTAGAGGAAGGG 59.173 60.000 0.00 0.00 0.00 3.95
5797 8782 2.032151 GCTGGAGTAGAGGAAGGGAGG 61.032 61.905 0.00 0.00 0.00 4.30
6216 9360 6.544650 TCTTTCTCAGTCTAGTGAGGTTACT 58.455 40.000 13.51 0.00 43.69 2.24
6224 9368 6.039829 CAGTCTAGTGAGGTTACTGATATGCA 59.960 42.308 0.00 0.00 39.93 3.96
6230 9374 7.765307 AGTGAGGTTACTGATATGCAAAATTG 58.235 34.615 0.00 0.00 0.00 2.32
6274 9418 7.859026 TTGTATACTGGGTAATAGGTATGCA 57.141 36.000 4.17 0.00 36.21 3.96
6275 9419 7.859026 TGTATACTGGGTAATAGGTATGCAA 57.141 36.000 4.17 0.00 35.51 4.08
6276 9420 8.444010 TGTATACTGGGTAATAGGTATGCAAT 57.556 34.615 4.17 0.00 35.51 3.56
6277 9421 9.549984 TGTATACTGGGTAATAGGTATGCAATA 57.450 33.333 4.17 0.00 35.51 1.90
6279 9423 8.911018 ATACTGGGTAATAGGTATGCAATAGA 57.089 34.615 0.00 0.00 0.00 1.98
6280 9424 7.005709 ACTGGGTAATAGGTATGCAATAGAC 57.994 40.000 0.00 0.00 0.00 2.59
6298 9442 4.473477 AGACTAGGACAATAACACCAGC 57.527 45.455 0.00 0.00 0.00 4.85
6324 9468 4.581824 TGTACCGTGTAAGGAGTCATATCC 59.418 45.833 0.00 0.00 39.89 2.59
6339 9483 7.926555 GGAGTCATATCCTCTTTATTGACGAAA 59.073 37.037 0.00 0.00 36.35 3.46
6342 9486 9.046296 GTCATATCCTCTTTATTGACGAAATGT 57.954 33.333 0.00 0.00 0.00 2.71
6377 9521 0.962855 TGTCTCTCCGTGCTCTCTGG 60.963 60.000 0.00 0.00 0.00 3.86
6382 9526 3.385384 CCGTGCTCTCTGGCCTCA 61.385 66.667 3.32 0.00 0.00 3.86
6386 9530 1.917282 TGCTCTCTGGCCTCAGCTT 60.917 57.895 3.32 0.00 40.69 3.74
6389 9533 0.176219 CTCTCTGGCCTCAGCTTCAG 59.824 60.000 3.32 0.00 40.69 3.02
6392 9536 0.322975 TCTGGCCTCAGCTTCAGTTC 59.677 55.000 3.32 0.00 40.69 3.01
6394 9538 0.035881 TGGCCTCAGCTTCAGTTCTG 59.964 55.000 3.32 0.00 39.73 3.02
6395 9539 0.322975 GGCCTCAGCTTCAGTTCTGA 59.677 55.000 0.00 0.00 39.73 3.27
6404 9548 3.080319 GCTTCAGTTCTGAGAATTGGCT 58.920 45.455 16.19 0.00 0.00 4.75
6405 9549 4.019860 AGCTTCAGTTCTGAGAATTGGCTA 60.020 41.667 16.19 3.68 0.00 3.93
6406 9550 4.094146 GCTTCAGTTCTGAGAATTGGCTAC 59.906 45.833 16.19 2.53 0.00 3.58
6407 9551 5.486526 CTTCAGTTCTGAGAATTGGCTACT 58.513 41.667 16.19 0.00 0.00 2.57
6408 9552 4.825422 TCAGTTCTGAGAATTGGCTACTG 58.175 43.478 16.19 9.36 34.55 2.74
6488 9632 4.969484 ACTTCTTGTTACTTCAACCCGAT 58.031 39.130 0.00 0.00 36.20 4.18
6613 9757 2.548280 CCAAAGCACAACAATCCATGCA 60.548 45.455 0.00 0.00 40.63 3.96
6660 9804 3.910627 ACAGGAAAAGAGAAGGCCTAGAA 59.089 43.478 5.16 0.00 0.00 2.10
6661 9805 4.257731 CAGGAAAAGAGAAGGCCTAGAAC 58.742 47.826 5.16 0.00 0.00 3.01
6662 9806 3.910627 AGGAAAAGAGAAGGCCTAGAACA 59.089 43.478 5.16 0.00 0.00 3.18
6663 9807 4.019771 AGGAAAAGAGAAGGCCTAGAACAG 60.020 45.833 5.16 0.00 0.00 3.16
6664 9808 3.342377 AAAGAGAAGGCCTAGAACAGC 57.658 47.619 5.16 0.00 0.00 4.40
6669 9813 0.035630 AAGGCCTAGAACAGCTGCTG 60.036 55.000 27.02 27.02 37.52 4.41
6670 9814 1.451028 GGCCTAGAACAGCTGCTGG 60.451 63.158 31.00 15.03 35.51 4.85
6672 9816 0.537188 GCCTAGAACAGCTGCTGGTA 59.463 55.000 31.00 18.42 35.51 3.25
6705 9849 4.141367 TGTCTTAACACCTTTGATGGGTCA 60.141 41.667 0.00 0.00 34.44 4.02
6706 9850 5.010282 GTCTTAACACCTTTGATGGGTCAT 58.990 41.667 0.00 0.00 34.44 3.06
6707 9851 5.009631 TCTTAACACCTTTGATGGGTCATG 58.990 41.667 0.00 0.00 34.44 3.07
6709 9853 3.243359 ACACCTTTGATGGGTCATGTT 57.757 42.857 0.00 0.00 34.44 2.71
6710 9854 2.892852 ACACCTTTGATGGGTCATGTTG 59.107 45.455 0.00 0.00 34.44 3.33
6711 9855 2.892852 CACCTTTGATGGGTCATGTTGT 59.107 45.455 0.00 0.00 34.44 3.32
6712 9856 3.057315 CACCTTTGATGGGTCATGTTGTC 60.057 47.826 0.00 0.00 34.44 3.18
6713 9857 2.162208 CCTTTGATGGGTCATGTTGTCG 59.838 50.000 0.00 0.00 33.56 4.35
6714 9858 2.559698 TTGATGGGTCATGTTGTCGT 57.440 45.000 0.00 0.00 33.56 4.34
6715 9859 2.559698 TGATGGGTCATGTTGTCGTT 57.440 45.000 0.00 0.00 0.00 3.85
6716 9860 2.857483 TGATGGGTCATGTTGTCGTTT 58.143 42.857 0.00 0.00 0.00 3.60
6717 9861 4.009370 TGATGGGTCATGTTGTCGTTTA 57.991 40.909 0.00 0.00 0.00 2.01
6718 9862 4.390264 TGATGGGTCATGTTGTCGTTTAA 58.610 39.130 0.00 0.00 0.00 1.52
6719 9863 4.822350 TGATGGGTCATGTTGTCGTTTAAA 59.178 37.500 0.00 0.00 0.00 1.52
6720 9864 5.475220 TGATGGGTCATGTTGTCGTTTAAAT 59.525 36.000 0.00 0.00 0.00 1.40
6721 9865 5.365403 TGGGTCATGTTGTCGTTTAAATC 57.635 39.130 0.00 0.00 0.00 2.17
6722 9866 4.822350 TGGGTCATGTTGTCGTTTAAATCA 59.178 37.500 0.00 0.00 0.00 2.57
6723 9867 5.475220 TGGGTCATGTTGTCGTTTAAATCAT 59.525 36.000 0.00 0.00 0.00 2.45
6724 9868 6.015856 TGGGTCATGTTGTCGTTTAAATCATT 60.016 34.615 0.00 0.00 0.00 2.57
6730 9874 8.797215 CATGTTGTCGTTTAAATCATTATGTGG 58.203 33.333 0.00 0.00 0.00 4.17
6755 9899 7.013846 GGATGTACAAGTCTAGAGTAGCATCTT 59.986 40.741 20.52 7.97 32.81 2.40
6768 9912 3.961480 AGCATCTTAAAAGTTTGGGCC 57.039 42.857 0.00 0.00 0.00 5.80
6771 9915 2.368311 TCTTAAAAGTTTGGGCCGGT 57.632 45.000 1.90 0.00 0.00 5.28
6794 9938 3.181462 TGCTCATATACTGACTGCCCTTG 60.181 47.826 0.00 0.00 0.00 3.61
6796 9940 4.684485 GCTCATATACTGACTGCCCTTGTT 60.684 45.833 0.00 0.00 0.00 2.83
6797 9941 5.453339 GCTCATATACTGACTGCCCTTGTTA 60.453 44.000 0.00 0.00 0.00 2.41
6798 9942 6.742644 GCTCATATACTGACTGCCCTTGTTAT 60.743 42.308 0.00 0.00 0.00 1.89
6799 9943 7.525526 GCTCATATACTGACTGCCCTTGTTATA 60.526 40.741 0.00 0.00 0.00 0.98
6800 9944 7.896811 TCATATACTGACTGCCCTTGTTATAG 58.103 38.462 0.00 0.00 0.00 1.31
6801 9945 3.914426 ACTGACTGCCCTTGTTATAGG 57.086 47.619 0.00 0.00 34.92 2.57
6802 9946 3.182152 ACTGACTGCCCTTGTTATAGGT 58.818 45.455 0.00 0.00 33.17 3.08
6803 9947 3.197983 ACTGACTGCCCTTGTTATAGGTC 59.802 47.826 0.00 0.00 33.17 3.85
6804 9948 3.450904 TGACTGCCCTTGTTATAGGTCT 58.549 45.455 0.00 0.00 33.17 3.85
6815 9962 8.101419 CCCTTGTTATAGGTCTAACAGAAGTTT 58.899 37.037 0.00 0.00 41.32 2.66
6817 9964 8.842358 TTGTTATAGGTCTAACAGAAGTTTGG 57.158 34.615 0.00 0.00 41.32 3.28
6838 9985 6.100404 TGGAAAATCTCCTGTGAATTTTGG 57.900 37.500 0.00 0.00 45.64 3.28
6851 9998 8.522830 CCTGTGAATTTTGGTCAAGTTACATAT 58.477 33.333 0.00 0.00 0.00 1.78
6853 10000 9.072375 TGTGAATTTTGGTCAAGTTACATATCA 57.928 29.630 0.00 0.00 0.00 2.15
6863 10010 6.258727 GTCAAGTTACATATCATCCTGTGGTG 59.741 42.308 0.00 0.00 0.00 4.17
6882 10029 7.101054 TGTGGTGAGTTGTAAGTGGTATATTC 58.899 38.462 0.00 0.00 0.00 1.75
6883 10030 7.101054 GTGGTGAGTTGTAAGTGGTATATTCA 58.899 38.462 0.00 0.00 0.00 2.57
6913 10060 4.714632 TCTTCCCTTTCGAATCTTGTGTT 58.285 39.130 0.00 0.00 0.00 3.32
6914 10061 5.130350 TCTTCCCTTTCGAATCTTGTGTTT 58.870 37.500 0.00 0.00 0.00 2.83
6916 10063 3.004315 TCCCTTTCGAATCTTGTGTTTGC 59.996 43.478 0.00 0.00 0.00 3.68
6917 10064 3.243367 CCCTTTCGAATCTTGTGTTTGCA 60.243 43.478 0.00 0.00 0.00 4.08
6923 10070 4.739228 TCGAATCTTGTGTTTGCATGTTTG 59.261 37.500 0.00 0.00 0.00 2.93
6929 10076 2.928757 TGTGTTTGCATGTTTGTGCTTC 59.071 40.909 0.00 0.00 45.27 3.86
6930 10077 2.034675 GTGTTTGCATGTTTGTGCTTCG 60.035 45.455 0.00 0.00 45.27 3.79
6941 10088 2.592574 TGCTTCGCTTGCAGCACT 60.593 55.556 0.00 0.00 42.58 4.40
6957 10104 6.094719 TGCAGCACTATTATCTTTTGCTTTG 58.905 36.000 0.00 0.00 41.60 2.77
6975 10123 1.452108 GAGAATGCGTGGGAAGGGG 60.452 63.158 0.00 0.00 0.00 4.79
6986 10134 0.550914 GGGAAGGGGCATGTATGTCA 59.449 55.000 0.00 0.00 33.08 3.58
7002 10150 7.282332 TGTATGTCATGTTTGGATGTTTTGA 57.718 32.000 0.00 0.00 0.00 2.69
7015 10163 6.472016 TGGATGTTTTGAGCTACTTGATACA 58.528 36.000 0.00 0.00 0.00 2.29
7016 10164 6.595326 TGGATGTTTTGAGCTACTTGATACAG 59.405 38.462 0.00 0.00 0.00 2.74
7017 10165 6.818644 GGATGTTTTGAGCTACTTGATACAGA 59.181 38.462 0.00 0.00 0.00 3.41
7019 10167 8.798859 ATGTTTTGAGCTACTTGATACAGAAT 57.201 30.769 0.00 0.00 0.00 2.40
7020 10168 8.621532 TGTTTTGAGCTACTTGATACAGAATT 57.378 30.769 0.00 0.00 0.00 2.17
7021 10169 8.721478 TGTTTTGAGCTACTTGATACAGAATTC 58.279 33.333 0.00 0.00 0.00 2.17
7022 10170 8.940952 GTTTTGAGCTACTTGATACAGAATTCT 58.059 33.333 0.88 0.88 0.00 2.40
7024 10172 8.484641 TTGAGCTACTTGATACAGAATTCTTG 57.515 34.615 4.86 4.38 0.00 3.02
7025 10173 7.840931 TGAGCTACTTGATACAGAATTCTTGA 58.159 34.615 4.86 0.00 0.00 3.02
7026 10174 8.481314 TGAGCTACTTGATACAGAATTCTTGAT 58.519 33.333 4.86 1.69 0.00 2.57
7027 10175 9.973450 GAGCTACTTGATACAGAATTCTTGATA 57.027 33.333 4.86 0.00 0.00 2.15
7063 10211 6.278363 CCGGTGTAATAATGCTACAGTAACT 58.722 40.000 0.00 0.00 30.04 2.24
7065 10213 7.201145 CGGTGTAATAATGCTACAGTAACTCT 58.799 38.462 0.00 0.00 30.04 3.24
7402 10561 1.307097 TTGCAATTGTTTTGGCCAGC 58.693 45.000 5.11 3.59 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.762370 TCGCCATGAATTAGCTCAGGA 59.238 47.619 0.00 0.00 0.00 3.86
13 14 3.316308 AGAAACCATCGCCATGAATTAGC 59.684 43.478 0.00 0.00 30.57 3.09
36 37 0.253044 GAGAGCAGCCCACCACATTA 59.747 55.000 0.00 0.00 0.00 1.90
37 38 1.001641 GAGAGCAGCCCACCACATT 60.002 57.895 0.00 0.00 0.00 2.71
48 49 0.176219 CAAGCAGGGAGAGAGAGCAG 59.824 60.000 0.00 0.00 0.00 4.24
67 68 1.571955 AAAGGGGGCATGGACATTTC 58.428 50.000 0.00 0.00 0.00 2.17
90 91 9.072294 GTCCGTATTAGTAAACGTTTTAAGCTA 57.928 33.333 20.19 13.10 37.40 3.32
133 134 1.409427 TGCCAATTTCCGTCCGTTTTT 59.591 42.857 0.00 0.00 0.00 1.94
134 135 1.000717 CTGCCAATTTCCGTCCGTTTT 60.001 47.619 0.00 0.00 0.00 2.43
141 142 0.813184 CTCATGCTGCCAATTTCCGT 59.187 50.000 0.00 0.00 0.00 4.69
160 161 8.225603 TCGGATCGGGTATTAGTATATTTACC 57.774 38.462 0.00 0.00 32.07 2.85
255 256 8.592105 TTTCATCCATTTCACATTTTCTTGTC 57.408 30.769 0.00 0.00 0.00 3.18
302 304 3.878103 TGCAGAAAACGTTTACTAGGCAA 59.122 39.130 15.03 3.35 0.00 4.52
303 305 3.468770 TGCAGAAAACGTTTACTAGGCA 58.531 40.909 15.03 15.98 0.00 4.75
304 306 4.464112 CTTGCAGAAAACGTTTACTAGGC 58.536 43.478 15.03 13.73 0.00 3.93
305 307 4.753107 TCCTTGCAGAAAACGTTTACTAGG 59.247 41.667 15.03 17.42 0.00 3.02
306 308 5.614887 GCTCCTTGCAGAAAACGTTTACTAG 60.615 44.000 15.03 10.08 42.31 2.57
307 309 4.212636 GCTCCTTGCAGAAAACGTTTACTA 59.787 41.667 15.03 1.17 42.31 1.82
308 310 3.003378 GCTCCTTGCAGAAAACGTTTACT 59.997 43.478 15.03 0.00 42.31 2.24
709 1013 4.451150 GCTGTCCGCCATCGACCA 62.451 66.667 0.00 0.00 38.10 4.02
813 1117 0.394938 ACATTGACACTGGGCACGTA 59.605 50.000 0.00 0.00 0.00 3.57
829 1133 0.597568 CCACATTTCGCACCACACAT 59.402 50.000 0.00 0.00 0.00 3.21
836 1140 1.196808 CACACTACCCACATTTCGCAC 59.803 52.381 0.00 0.00 0.00 5.34
929 1237 1.345415 CTTTTGCAAGCTTGGATGGGT 59.655 47.619 27.10 0.00 0.00 4.51
948 1256 0.183492 TTGTGTCTCTGCTTTGGGCT 59.817 50.000 0.00 0.00 42.39 5.19
949 1257 1.251251 ATTGTGTCTCTGCTTTGGGC 58.749 50.000 0.00 0.00 42.22 5.36
952 1260 8.127327 CCATTATTCTATTGTGTCTCTGCTTTG 58.873 37.037 0.00 0.00 0.00 2.77
1089 1405 3.036959 GGGAGGGGGAGGAGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
1090 1406 4.179599 GGGGAGGGGGAGGAGAGG 62.180 77.778 0.00 0.00 0.00 3.69
1091 1407 3.039526 AGGGGAGGGGGAGGAGAG 61.040 72.222 0.00 0.00 0.00 3.20
1092 1408 3.036959 GAGGGGAGGGGGAGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
1100 1416 2.760385 GAGACCACGAGGGGAGGG 60.760 72.222 3.29 0.00 42.91 4.30
1102 1418 1.755008 GAGGAGACCACGAGGGGAG 60.755 68.421 3.29 0.00 42.91 4.30
1103 1419 2.359404 GAGGAGACCACGAGGGGA 59.641 66.667 3.29 0.00 42.91 4.81
1318 1655 1.988846 GGAAGGGATGGATAAGGGGAG 59.011 57.143 0.00 0.00 0.00 4.30
1345 1682 2.032634 CAAGTAAAGAGCGGCGCCA 61.033 57.895 30.40 0.53 0.00 5.69
1351 1688 7.112287 CGTCATCTATCTAACAAGTAAAGAGCG 59.888 40.741 0.00 0.00 0.00 5.03
1355 1692 6.142480 CGGCGTCATCTATCTAACAAGTAAAG 59.858 42.308 0.00 0.00 0.00 1.85
1390 1731 1.645034 CCGTATGACCTGCACAAGAG 58.355 55.000 0.00 0.00 0.00 2.85
1518 1859 4.629200 CGAGAAGAGAAACAGAAGGGAATG 59.371 45.833 0.00 0.00 0.00 2.67
1520 1861 3.555168 GCGAGAAGAGAAACAGAAGGGAA 60.555 47.826 0.00 0.00 0.00 3.97
1527 1868 0.243907 TCGGGCGAGAAGAGAAACAG 59.756 55.000 0.00 0.00 0.00 3.16
1555 1896 6.686632 GCATCCTAATAAGGCAGTGAGTAACT 60.687 42.308 0.00 0.00 43.31 2.24
1556 1897 5.467063 GCATCCTAATAAGGCAGTGAGTAAC 59.533 44.000 0.00 0.00 43.31 2.50
1557 1898 5.454755 GGCATCCTAATAAGGCAGTGAGTAA 60.455 44.000 0.00 0.00 43.31 2.24
1558 1899 4.040461 GGCATCCTAATAAGGCAGTGAGTA 59.960 45.833 0.00 0.00 43.31 2.59
1559 1900 3.181450 GGCATCCTAATAAGGCAGTGAGT 60.181 47.826 0.00 0.00 43.31 3.41
1560 1901 3.406764 GGCATCCTAATAAGGCAGTGAG 58.593 50.000 0.00 0.00 43.31 3.51
1561 1902 2.224281 CGGCATCCTAATAAGGCAGTGA 60.224 50.000 0.00 0.00 43.31 3.41
1562 1903 2.146342 CGGCATCCTAATAAGGCAGTG 58.854 52.381 0.00 0.00 43.31 3.66
1563 1904 1.543429 GCGGCATCCTAATAAGGCAGT 60.543 52.381 0.00 0.00 43.31 4.40
1564 1905 1.160137 GCGGCATCCTAATAAGGCAG 58.840 55.000 0.00 0.00 43.31 4.85
1565 1906 0.472044 TGCGGCATCCTAATAAGGCA 59.528 50.000 0.00 0.00 43.31 4.75
1566 1907 1.470098 CATGCGGCATCCTAATAAGGC 59.530 52.381 13.53 0.00 43.31 4.35
1567 1908 2.783135 ACATGCGGCATCCTAATAAGG 58.217 47.619 13.53 0.92 45.21 2.69
1568 1909 3.814842 TCAACATGCGGCATCCTAATAAG 59.185 43.478 13.53 1.68 0.00 1.73
1569 1910 3.563808 GTCAACATGCGGCATCCTAATAA 59.436 43.478 13.53 0.00 0.00 1.40
1570 1911 3.138304 GTCAACATGCGGCATCCTAATA 58.862 45.455 13.53 0.00 0.00 0.98
1571 1912 1.949525 GTCAACATGCGGCATCCTAAT 59.050 47.619 13.53 0.00 0.00 1.73
1572 1913 1.065491 AGTCAACATGCGGCATCCTAA 60.065 47.619 13.53 0.00 0.00 2.69
1587 1928 0.537143 ACAAAGGCCGCATCAGTCAA 60.537 50.000 0.00 0.00 0.00 3.18
1768 2109 9.701098 AACTAAAACTATGATGACGAACTTGTA 57.299 29.630 0.00 0.00 0.00 2.41
1792 2133 3.341857 TGTGACCATTGCACGTAAAAC 57.658 42.857 0.00 0.00 39.07 2.43
1793 2134 3.628032 TCTTGTGACCATTGCACGTAAAA 59.372 39.130 0.00 0.00 39.07 1.52
1794 2135 3.206964 TCTTGTGACCATTGCACGTAAA 58.793 40.909 0.00 0.00 39.07 2.01
1795 2136 2.839975 TCTTGTGACCATTGCACGTAA 58.160 42.857 0.00 0.00 39.07 3.18
1796 2137 2.535012 TCTTGTGACCATTGCACGTA 57.465 45.000 0.00 0.00 39.07 3.57
1797 2138 1.536766 CATCTTGTGACCATTGCACGT 59.463 47.619 0.00 0.00 39.07 4.49
2096 2466 5.507315 CGCCTAAAATTGTTGGTGAGAGTTT 60.507 40.000 3.79 0.00 32.31 2.66
2348 5148 1.127343 AGCAGGCTAGAATCTGGGTC 58.873 55.000 0.00 0.00 0.00 4.46
2374 5174 5.128919 TGGCATAAACCAAACAAAATTGCT 58.871 33.333 0.00 0.00 36.55 3.91
2476 5276 9.462174 GCAATATTGAAACATGAATCCGAAATA 57.538 29.630 19.73 0.00 0.00 1.40
2611 5415 7.268586 AGATAAGGCTGTAAACACAGTGATAG 58.731 38.462 7.81 0.00 39.76 2.08
2619 5423 9.649167 TCTTTAAGTAGATAAGGCTGTAAACAC 57.351 33.333 0.00 0.00 0.00 3.32
2644 5448 9.989869 GCCTGAGTTTAAGTAATAAATGAAGTC 57.010 33.333 0.00 0.00 35.98 3.01
2646 5450 9.178758 AGGCCTGAGTTTAAGTAATAAATGAAG 57.821 33.333 3.11 0.00 35.98 3.02
2656 5460 7.825761 GGTAAACATAAGGCCTGAGTTTAAGTA 59.174 37.037 26.37 13.18 36.69 2.24
2662 5466 4.042934 AGTGGTAAACATAAGGCCTGAGTT 59.957 41.667 5.69 9.14 0.00 3.01
2691 5495 5.829986 TCCTCTCAATCAATTGAAATGGGA 58.170 37.500 20.08 20.08 45.26 4.37
2769 5575 7.101652 TGCATAACTGTACACCAAAAGAAAA 57.898 32.000 0.00 0.00 0.00 2.29
2773 5579 5.238432 TCACTGCATAACTGTACACCAAAAG 59.762 40.000 0.00 0.00 0.00 2.27
2774 5580 5.008217 GTCACTGCATAACTGTACACCAAAA 59.992 40.000 0.00 0.00 0.00 2.44
2778 5584 3.000727 GGTCACTGCATAACTGTACACC 58.999 50.000 0.00 0.00 0.00 4.16
2779 5585 3.000727 GGGTCACTGCATAACTGTACAC 58.999 50.000 0.00 0.00 0.00 2.90
2780 5586 2.635427 TGGGTCACTGCATAACTGTACA 59.365 45.455 0.00 0.00 0.00 2.90
2781 5587 3.328382 TGGGTCACTGCATAACTGTAC 57.672 47.619 0.00 0.00 0.00 2.90
2876 5684 2.885135 AGCCCATTTCAGACATCACA 57.115 45.000 0.00 0.00 0.00 3.58
2948 5756 3.603965 ACCTGGTAAACAAATCCCACA 57.396 42.857 0.00 0.00 0.00 4.17
3015 5823 2.496070 AGTGCGCACTAAAGGACATCTA 59.504 45.455 40.15 0.00 40.43 1.98
3039 5850 2.245028 TGTACTCCAGAGTATCAGGGCT 59.755 50.000 10.56 0.00 42.88 5.19
3057 5868 2.360801 GCACAAAAAGCAGGGAAGTGTA 59.639 45.455 0.00 0.00 0.00 2.90
3058 5869 1.136891 GCACAAAAAGCAGGGAAGTGT 59.863 47.619 0.00 0.00 0.00 3.55
3059 5870 1.856802 GCACAAAAAGCAGGGAAGTG 58.143 50.000 0.00 0.00 0.00 3.16
3065 5877 0.662374 CAGAGCGCACAAAAAGCAGG 60.662 55.000 11.47 0.00 0.00 4.85
3078 5891 2.191513 CCCCATCAATGCCAGAGCG 61.192 63.158 0.00 0.00 44.31 5.03
3080 5893 1.133575 ACATCCCCATCAATGCCAGAG 60.134 52.381 0.00 0.00 0.00 3.35
3093 5906 3.560636 ACAAGCACTGTATACATCCCC 57.439 47.619 5.91 0.00 36.10 4.81
3145 5958 0.243365 GAATGCAACACCGATGGCAA 59.757 50.000 0.00 0.00 40.02 4.52
3162 5975 8.293157 TGTTCAAGTGCATAAATCATTAACGAA 58.707 29.630 0.00 0.00 0.00 3.85
3164 5977 7.750458 ACTGTTCAAGTGCATAAATCATTAACG 59.250 33.333 0.00 0.00 37.88 3.18
3183 5996 5.069318 TCAATAGTTCCAATGCACTGTTCA 58.931 37.500 0.00 0.00 0.00 3.18
3195 6008 6.299805 AGTGCAATAGTCTCAATAGTTCCA 57.700 37.500 0.00 0.00 0.00 3.53
3237 6050 0.890542 AATGCATGCACACCGACAGT 60.891 50.000 25.37 0.00 0.00 3.55
3281 6094 4.320057 GCTTGAAACAGAAGGATGTGACAG 60.320 45.833 0.00 0.00 32.52 3.51
3323 6136 2.103432 TGTGCAGGTTCTACGAAAGGAA 59.897 45.455 0.00 0.00 0.00 3.36
3331 6144 1.453155 CCCACATGTGCAGGTTCTAC 58.547 55.000 20.81 0.00 0.00 2.59
3338 6151 1.216977 CAATGGCCCACATGTGCAG 59.783 57.895 20.81 14.32 40.44 4.41
3357 6170 5.083122 TCAAATCTGCTTTAAATGTCCCCA 58.917 37.500 0.00 0.00 0.00 4.96
3359 6172 7.603784 ACAAATCAAATCTGCTTTAAATGTCCC 59.396 33.333 0.00 0.00 0.00 4.46
3360 6173 8.437742 CACAAATCAAATCTGCTTTAAATGTCC 58.562 33.333 0.00 0.00 0.00 4.02
3376 6189 4.161189 TGCTTTCCAGGTTCACAAATCAAA 59.839 37.500 0.00 0.00 0.00 2.69
3418 6231 1.734465 CAAGAAGCAACGATCCCTCAC 59.266 52.381 0.00 0.00 0.00 3.51
3422 6235 1.200020 CCAACAAGAAGCAACGATCCC 59.800 52.381 0.00 0.00 0.00 3.85
3479 6293 6.767456 AGATGAATGGGATGATACAGTTCTC 58.233 40.000 0.00 0.00 0.00 2.87
3481 6295 7.814264 AAAGATGAATGGGATGATACAGTTC 57.186 36.000 0.00 0.00 0.00 3.01
3484 6298 7.286087 TGGAAAAAGATGAATGGGATGATACAG 59.714 37.037 0.00 0.00 0.00 2.74
3488 6302 6.614087 ACATGGAAAAAGATGAATGGGATGAT 59.386 34.615 0.00 0.00 0.00 2.45
3489 6303 5.959594 ACATGGAAAAAGATGAATGGGATGA 59.040 36.000 0.00 0.00 0.00 2.92
3490 6304 6.229936 ACATGGAAAAAGATGAATGGGATG 57.770 37.500 0.00 0.00 0.00 3.51
3491 6305 7.472381 GCATACATGGAAAAAGATGAATGGGAT 60.472 37.037 0.00 0.00 0.00 3.85
3492 6306 6.183360 GCATACATGGAAAAAGATGAATGGGA 60.183 38.462 0.00 0.00 0.00 4.37
3493 6307 5.987347 GCATACATGGAAAAAGATGAATGGG 59.013 40.000 0.00 0.00 0.00 4.00
3494 6308 5.987347 GGCATACATGGAAAAAGATGAATGG 59.013 40.000 0.00 0.00 0.00 3.16
3495 6309 6.477688 GTGGCATACATGGAAAAAGATGAATG 59.522 38.462 0.00 0.00 0.00 2.67
3496 6310 6.154877 TGTGGCATACATGGAAAAAGATGAAT 59.845 34.615 0.00 0.00 33.42 2.57
3497 6311 5.479724 TGTGGCATACATGGAAAAAGATGAA 59.520 36.000 0.00 0.00 33.42 2.57
3529 6343 0.322322 ACTTGGAATCGCCGGTAACA 59.678 50.000 1.90 0.00 40.66 2.41
3551 6365 1.180029 GGCACAATGGACAGCAAGAT 58.820 50.000 0.00 0.00 0.00 2.40
3585 6399 4.771590 TGATGACCATCAAAGAAACTGC 57.228 40.909 10.00 0.00 44.14 4.40
3607 6421 0.545171 CTCCATGCAGGGACTCATGT 59.455 55.000 17.85 0.00 40.09 3.21
3608 6422 0.179026 CCTCCATGCAGGGACTCATG 60.179 60.000 17.85 6.29 40.80 3.07
3614 6428 3.329542 GAACGCCTCCATGCAGGGA 62.330 63.158 20.69 20.69 38.24 4.20
3629 6443 3.215975 AGCACGGAGATACCTCTAGAAC 58.784 50.000 0.00 0.00 39.38 3.01
3668 6482 5.468072 GCCACCTGAATATAGATCAACACTG 59.532 44.000 0.00 0.00 0.00 3.66
3743 6557 0.310854 GTCTCCAAACCTTGTTGGCG 59.689 55.000 0.00 0.00 46.56 5.69
3771 6585 5.156355 GTTCATTGTACAATGGCAACTCAG 58.844 41.667 36.25 16.56 46.08 3.35
3785 6599 3.069016 AGACGGCCATATCGTTCATTGTA 59.931 43.478 2.24 0.00 41.22 2.41
3794 6608 2.337583 CATACCAAGACGGCCATATCG 58.662 52.381 2.24 0.00 39.03 2.92
3804 6618 4.751060 TGTGTTATCGTCCATACCAAGAC 58.249 43.478 0.00 0.00 0.00 3.01
3827 6641 4.222145 TCATCTTCCTACCACCACAACTAC 59.778 45.833 0.00 0.00 0.00 2.73
3886 6700 4.700213 GGATGAGTCTCTATAGAGCAGGAC 59.300 50.000 22.81 16.10 41.80 3.85
3907 6725 1.680522 GAGAGATGGCTGCTTCGGGA 61.681 60.000 0.00 0.00 0.00 5.14
3984 6802 5.280882 CCATGCCAGACTTATATTCCCATCT 60.281 44.000 0.00 0.00 0.00 2.90
4000 6818 1.743772 CGACCTAAGTTCCCATGCCAG 60.744 57.143 0.00 0.00 0.00 4.85
4033 6851 5.230182 TGAGGCATATTATACGTGCTTCAG 58.770 41.667 8.05 0.00 45.87 3.02
4067 6885 4.168922 TCGTCGAATGAAGTTTCTAGCA 57.831 40.909 0.00 0.00 0.00 3.49
4119 6937 3.500982 TGATTAGCGAAAAACATGCTGC 58.499 40.909 0.00 0.00 39.73 5.25
4122 6940 7.048000 TCAATTTGATTAGCGAAAAACATGC 57.952 32.000 0.00 0.00 0.00 4.06
4126 6944 7.595130 AGGTCTTCAATTTGATTAGCGAAAAAC 59.405 33.333 0.00 0.00 0.00 2.43
4131 6949 7.915293 TTTAGGTCTTCAATTTGATTAGCGA 57.085 32.000 0.00 0.00 0.00 4.93
4144 6962 5.105513 TCACGCACAGATATTTAGGTCTTCA 60.106 40.000 0.00 0.00 0.00 3.02
4160 6978 3.897141 TGGGAATATAAGTCACGCACA 57.103 42.857 0.00 0.00 0.00 4.57
4197 7015 6.598850 ACTTGTTTGCCAATTTGACAGATTTT 59.401 30.769 0.00 0.00 31.20 1.82
4210 7028 3.651206 CATATGTGCACTTGTTTGCCAA 58.349 40.909 19.41 0.00 42.25 4.52
4307 7125 6.017109 AGAGTTTGATTAACGAGCACATGTTT 60.017 34.615 0.00 0.00 41.78 2.83
4315 7133 5.121768 TGGCTTAAGAGTTTGATTAACGAGC 59.878 40.000 6.67 0.00 41.78 5.03
4318 7136 7.752695 AGATTGGCTTAAGAGTTTGATTAACG 58.247 34.615 6.67 0.00 41.78 3.18
4323 7141 8.897752 GTCATAAGATTGGCTTAAGAGTTTGAT 58.102 33.333 6.67 0.00 42.10 2.57
4335 7153 2.308570 TGGTGGTGTCATAAGATTGGCT 59.691 45.455 0.00 0.00 0.00 4.75
4336 7154 2.722094 TGGTGGTGTCATAAGATTGGC 58.278 47.619 0.00 0.00 0.00 4.52
4341 7159 6.306643 TCATGTTATGGTGGTGTCATAAGA 57.693 37.500 0.00 0.00 37.64 2.10
4350 7168 7.161715 ACCCTAATATTCATGTTATGGTGGT 57.838 36.000 0.00 0.00 33.50 4.16
4361 7179 7.872138 CCATATGGTGGTACCCTAATATTCAT 58.128 38.462 14.09 4.41 43.44 2.57
4388 7206 1.195115 ATACTCCGCTCCTCTTTGCA 58.805 50.000 0.00 0.00 0.00 4.08
4417 7236 0.251341 ACCCATGTTCCTGCTTCACC 60.251 55.000 0.00 0.00 0.00 4.02
4445 7268 1.534163 CATCACTATGCGGCTCCATTG 59.466 52.381 0.00 0.00 0.00 2.82
4455 7278 6.415867 GCAAACATTATGTGACATCACTATGC 59.584 38.462 12.98 4.02 46.55 3.14
4475 7298 6.428385 AGCTCAATTGTAGTATCAGCAAAC 57.572 37.500 13.55 0.00 0.00 2.93
4565 7391 9.868277 TTGCAAAATCAGTTTCTCTTTTTAGAA 57.132 25.926 0.00 0.00 33.69 2.10
4628 7485 5.137551 TGCAGATCATCAATGTCAATGGAT 58.862 37.500 0.00 0.00 0.00 3.41
4666 7523 6.873076 TCTGAGAAAACAAATTGCAAACAACT 59.127 30.769 1.71 0.00 38.99 3.16
4670 7527 6.630045 GCAATCTGAGAAAACAAATTGCAAAC 59.370 34.615 1.71 0.00 46.75 2.93
4761 7618 9.907229 AACAACTAAATTTTAAAATGGGTCCAA 57.093 25.926 14.04 0.00 0.00 3.53
4762 7619 9.907229 AAACAACTAAATTTTAAAATGGGTCCA 57.093 25.926 14.04 0.00 0.00 4.02
4764 7621 9.658475 GCAAACAACTAAATTTTAAAATGGGTC 57.342 29.630 14.04 0.00 0.00 4.46
4765 7622 9.178758 TGCAAACAACTAAATTTTAAAATGGGT 57.821 25.926 14.04 10.12 0.00 4.51
4777 7634 9.553418 GTTGAAACAAATTGCAAACAACTAAAT 57.447 25.926 1.71 0.00 38.99 1.40
4778 7635 8.559536 TGTTGAAACAAATTGCAAACAACTAAA 58.440 25.926 1.71 0.00 35.66 1.85
4779 7636 8.087982 TGTTGAAACAAATTGCAAACAACTAA 57.912 26.923 1.71 0.00 35.66 2.24
4780 7637 7.658179 TGTTGAAACAAATTGCAAACAACTA 57.342 28.000 1.71 8.92 35.66 2.24
4781 7638 6.551385 TGTTGAAACAAATTGCAAACAACT 57.449 29.167 1.71 0.00 35.66 3.16
4782 7639 7.793907 AATGTTGAAACAAATTGCAAACAAC 57.206 28.000 1.71 11.48 43.03 3.32
4783 7640 7.864379 ACAAATGTTGAAACAAATTGCAAACAA 59.136 25.926 17.84 0.00 43.03 2.83
4784 7641 7.365741 ACAAATGTTGAAACAAATTGCAAACA 58.634 26.923 17.84 0.00 43.03 2.83
4785 7642 7.536622 TGACAAATGTTGAAACAAATTGCAAAC 59.463 29.630 17.84 0.00 43.03 2.93
4786 7643 7.587629 TGACAAATGTTGAAACAAATTGCAAA 58.412 26.923 17.84 7.40 43.03 3.68
4787 7644 7.137490 TGACAAATGTTGAAACAAATTGCAA 57.863 28.000 17.84 0.00 43.03 4.08
4788 7645 6.732531 TGACAAATGTTGAAACAAATTGCA 57.267 29.167 17.84 14.93 43.03 4.08
4789 7646 9.713740 TTTATGACAAATGTTGAAACAAATTGC 57.286 25.926 17.84 13.43 43.03 3.56
4821 7678 7.992033 AGCAGAAGCATTGAAAGATAACTAGAT 59.008 33.333 0.00 0.00 45.49 1.98
4855 7712 6.472016 TGTCTCATTAGTGGAATACAAAGCA 58.528 36.000 0.00 0.00 0.00 3.91
4856 7713 6.985188 TGTCTCATTAGTGGAATACAAAGC 57.015 37.500 0.00 0.00 0.00 3.51
4857 7714 7.517417 GCGATGTCTCATTAGTGGAATACAAAG 60.517 40.741 0.00 0.00 0.00 2.77
4858 7715 6.257849 GCGATGTCTCATTAGTGGAATACAAA 59.742 38.462 0.00 0.00 0.00 2.83
4861 7718 4.383052 CGCGATGTCTCATTAGTGGAATAC 59.617 45.833 0.00 0.00 0.00 1.89
4875 7741 2.357396 TGCACAAGCGCGATGTCT 60.357 55.556 12.10 0.00 46.23 3.41
4881 7747 4.126390 CGAGTCTGCACAAGCGCG 62.126 66.667 0.00 0.00 46.23 6.86
4882 7748 2.724708 CTCGAGTCTGCACAAGCGC 61.725 63.158 3.62 0.00 46.23 5.92
4935 7801 2.882927 TAGATGCCACCGATGTACAC 57.117 50.000 0.00 0.00 0.00 2.90
5032 7898 9.950496 AGTATAAAGATATTACCATCCAAGCAG 57.050 33.333 0.00 0.00 0.00 4.24
5063 7929 4.201485 GCACAACACAGAAAGAAAAACACG 60.201 41.667 0.00 0.00 0.00 4.49
5086 7952 5.940192 TTACCATCCAAGCAATAATAGCG 57.060 39.130 0.00 0.00 37.01 4.26
5093 7959 6.438425 GGGAATGATATTACCATCCAAGCAAT 59.562 38.462 0.00 0.00 0.00 3.56
5094 7960 5.774690 GGGAATGATATTACCATCCAAGCAA 59.225 40.000 0.00 0.00 0.00 3.91
5097 7963 7.465116 AGAAGGGAATGATATTACCATCCAAG 58.535 38.462 5.64 0.00 0.00 3.61
5098 7964 7.406620 AGAAGGGAATGATATTACCATCCAA 57.593 36.000 5.64 0.00 0.00 3.53
5099 7965 6.012508 GGAGAAGGGAATGATATTACCATCCA 60.013 42.308 5.64 0.00 0.00 3.41
5100 7966 6.418946 GGAGAAGGGAATGATATTACCATCC 58.581 44.000 5.64 5.95 0.00 3.51
5101 7967 6.216456 AGGGAGAAGGGAATGATATTACCATC 59.784 42.308 5.64 3.14 0.00 3.51
5102 7968 6.012157 CAGGGAGAAGGGAATGATATTACCAT 60.012 42.308 5.64 0.00 0.00 3.55
5103 7969 5.310594 CAGGGAGAAGGGAATGATATTACCA 59.689 44.000 5.64 0.00 0.00 3.25
5104 7970 5.804771 GCAGGGAGAAGGGAATGATATTACC 60.805 48.000 0.00 0.00 0.00 2.85
5105 7971 5.013599 AGCAGGGAGAAGGGAATGATATTAC 59.986 44.000 0.00 0.00 0.00 1.89
5106 7972 5.165652 AGCAGGGAGAAGGGAATGATATTA 58.834 41.667 0.00 0.00 0.00 0.98
5107 7973 3.986134 AGCAGGGAGAAGGGAATGATATT 59.014 43.478 0.00 0.00 0.00 1.28
5110 7976 1.904440 AGCAGGGAGAAGGGAATGAT 58.096 50.000 0.00 0.00 0.00 2.45
5112 7978 1.283029 TGAAGCAGGGAGAAGGGAATG 59.717 52.381 0.00 0.00 0.00 2.67
5121 7987 2.763448 AGCTAAGTACTGAAGCAGGGAG 59.237 50.000 24.69 3.55 38.75 4.30
5163 8123 3.557228 AAAGGTGCAGGCATTGAAAAA 57.443 38.095 0.00 0.00 0.00 1.94
5209 8169 7.847711 AGCTTAGACAGTATCATGGTTATCT 57.152 36.000 0.00 0.00 0.00 1.98
5221 8181 7.109501 TGGCAAAATTCATAGCTTAGACAGTA 58.890 34.615 0.00 0.00 0.00 2.74
5226 8188 7.122501 TCACAATGGCAAAATTCATAGCTTAGA 59.877 33.333 0.00 0.00 0.00 2.10
5231 8193 6.044046 TGATCACAATGGCAAAATTCATAGC 58.956 36.000 0.00 0.00 0.00 2.97
5244 8207 2.488528 CCCTCCCTCATGATCACAATGG 60.489 54.545 0.00 0.00 0.00 3.16
5245 8208 2.860009 CCCTCCCTCATGATCACAATG 58.140 52.381 0.00 0.00 0.00 2.82
5287 8250 3.276846 GAAGTGTTGCACCGCCGT 61.277 61.111 0.00 0.00 34.49 5.68
5288 8251 3.276091 TGAAGTGTTGCACCGCCG 61.276 61.111 0.00 0.00 34.49 6.46
5320 8284 5.380043 CCCAGTATTGCCTATCATCACTTT 58.620 41.667 0.00 0.00 0.00 2.66
5321 8285 4.202503 CCCCAGTATTGCCTATCATCACTT 60.203 45.833 0.00 0.00 0.00 3.16
5343 8307 2.860972 GAAGAGGTTCTCTGCCGCCC 62.861 65.000 0.00 0.00 40.28 6.13
5346 8310 1.548269 AGAAGAAGAGGTTCTCTGCCG 59.452 52.381 0.00 0.00 42.59 5.69
5362 8326 5.593679 TTTTGGGACGGAGATAGTAGAAG 57.406 43.478 0.00 0.00 0.00 2.85
5366 8330 8.800332 GTCTTATATTTTGGGACGGAGATAGTA 58.200 37.037 0.00 0.00 0.00 1.82
5367 8331 7.523380 CGTCTTATATTTTGGGACGGAGATAGT 60.523 40.741 0.00 0.00 43.69 2.12
5368 8332 6.807230 CGTCTTATATTTTGGGACGGAGATAG 59.193 42.308 0.00 0.00 43.69 2.08
5369 8333 6.684686 CGTCTTATATTTTGGGACGGAGATA 58.315 40.000 0.00 0.00 43.69 1.98
5370 8334 5.539048 CGTCTTATATTTTGGGACGGAGAT 58.461 41.667 0.00 0.00 43.69 2.75
5371 8335 4.940463 CGTCTTATATTTTGGGACGGAGA 58.060 43.478 0.00 0.00 43.69 3.71
5376 8340 6.128117 TGCAAAGACGTCTTATATTTTGGGAC 60.128 38.462 29.91 11.63 34.61 4.46
5377 8341 5.941058 TGCAAAGACGTCTTATATTTTGGGA 59.059 36.000 29.91 11.12 34.61 4.37
5378 8342 6.128007 ACTGCAAAGACGTCTTATATTTTGGG 60.128 38.462 29.91 14.96 34.61 4.12
5379 8343 6.842163 ACTGCAAAGACGTCTTATATTTTGG 58.158 36.000 29.91 16.21 34.61 3.28
5380 8344 8.015087 TGAACTGCAAAGACGTCTTATATTTTG 58.985 33.333 29.91 22.76 34.61 2.44
5381 8345 8.094798 TGAACTGCAAAGACGTCTTATATTTT 57.905 30.769 29.91 19.58 34.61 1.82
5382 8346 7.667043 TGAACTGCAAAGACGTCTTATATTT 57.333 32.000 29.91 18.62 34.61 1.40
5383 8347 7.667043 TTGAACTGCAAAGACGTCTTATATT 57.333 32.000 29.91 18.95 34.61 1.28
5384 8348 7.849804 ATTGAACTGCAAAGACGTCTTATAT 57.150 32.000 29.91 13.09 40.48 0.86
5385 8349 7.667043 AATTGAACTGCAAAGACGTCTTATA 57.333 32.000 29.91 17.66 40.48 0.98
5386 8350 6.560253 AATTGAACTGCAAAGACGTCTTAT 57.440 33.333 29.91 17.27 40.48 1.73
5387 8351 6.037720 TCAAATTGAACTGCAAAGACGTCTTA 59.962 34.615 29.91 14.59 40.48 2.10
5388 8352 4.900635 AATTGAACTGCAAAGACGTCTT 57.099 36.364 24.93 24.93 40.48 3.01
5389 8353 4.335315 TCAAATTGAACTGCAAAGACGTCT 59.665 37.500 13.58 13.58 40.48 4.18
5390 8354 4.597079 TCAAATTGAACTGCAAAGACGTC 58.403 39.130 7.70 7.70 40.48 4.34
5391 8355 4.630894 TCAAATTGAACTGCAAAGACGT 57.369 36.364 0.00 0.00 40.48 4.34
5419 8383 7.937394 CCTCCGTCCCATAATATAAGACTTTTT 59.063 37.037 0.00 0.00 0.00 1.94
5420 8384 7.072076 ACCTCCGTCCCATAATATAAGACTTTT 59.928 37.037 0.00 0.00 0.00 2.27
5421 8385 6.557633 ACCTCCGTCCCATAATATAAGACTTT 59.442 38.462 0.00 0.00 0.00 2.66
5422 8386 6.082707 ACCTCCGTCCCATAATATAAGACTT 58.917 40.000 0.00 0.00 0.00 3.01
5423 8387 5.652324 ACCTCCGTCCCATAATATAAGACT 58.348 41.667 0.00 0.00 0.00 3.24
5424 8388 5.997384 ACCTCCGTCCCATAATATAAGAC 57.003 43.478 0.00 0.00 0.00 3.01
5425 8389 6.797707 ACTACCTCCGTCCCATAATATAAGA 58.202 40.000 0.00 0.00 0.00 2.10
5426 8390 8.763984 ATACTACCTCCGTCCCATAATATAAG 57.236 38.462 0.00 0.00 0.00 1.73
5428 8392 9.803507 CATATACTACCTCCGTCCCATAATATA 57.196 37.037 0.00 0.00 0.00 0.86
5429 8393 7.728981 CCATATACTACCTCCGTCCCATAATAT 59.271 40.741 0.00 0.00 0.00 1.28
5430 8394 7.064866 CCATATACTACCTCCGTCCCATAATA 58.935 42.308 0.00 0.00 0.00 0.98
5431 8395 5.897824 CCATATACTACCTCCGTCCCATAAT 59.102 44.000 0.00 0.00 0.00 1.28
5432 8396 5.266788 CCATATACTACCTCCGTCCCATAA 58.733 45.833 0.00 0.00 0.00 1.90
5433 8397 4.863548 CCATATACTACCTCCGTCCCATA 58.136 47.826 0.00 0.00 0.00 2.74
5434 8398 3.709587 CCATATACTACCTCCGTCCCAT 58.290 50.000 0.00 0.00 0.00 4.00
5435 8399 2.820485 GCCATATACTACCTCCGTCCCA 60.820 54.545 0.00 0.00 0.00 4.37
5436 8400 1.823610 GCCATATACTACCTCCGTCCC 59.176 57.143 0.00 0.00 0.00 4.46
5437 8401 2.492484 CTGCCATATACTACCTCCGTCC 59.508 54.545 0.00 0.00 0.00 4.79
5438 8402 2.094649 GCTGCCATATACTACCTCCGTC 60.095 54.545 0.00 0.00 0.00 4.79
5439 8403 1.893801 GCTGCCATATACTACCTCCGT 59.106 52.381 0.00 0.00 0.00 4.69
5440 8404 1.893137 TGCTGCCATATACTACCTCCG 59.107 52.381 0.00 0.00 0.00 4.63
5441 8405 3.772025 AGATGCTGCCATATACTACCTCC 59.228 47.826 0.00 0.00 0.00 4.30
5442 8406 4.142049 GGAGATGCTGCCATATACTACCTC 60.142 50.000 0.00 0.00 0.00 3.85
5443 8407 3.772025 GGAGATGCTGCCATATACTACCT 59.228 47.826 0.00 0.00 0.00 3.08
5444 8408 3.772025 AGGAGATGCTGCCATATACTACC 59.228 47.826 0.00 0.00 32.13 3.18
5445 8409 5.047021 TCAAGGAGATGCTGCCATATACTAC 60.047 44.000 0.00 0.00 32.73 2.73
5446 8410 5.086621 TCAAGGAGATGCTGCCATATACTA 58.913 41.667 0.00 0.00 32.73 1.82
5447 8411 3.906218 TCAAGGAGATGCTGCCATATACT 59.094 43.478 0.00 0.00 35.37 2.12
5448 8412 4.277515 TCAAGGAGATGCTGCCATATAC 57.722 45.455 0.00 0.00 0.00 1.47
5459 8423 6.350361 CCACTGCTAGATCTATCAAGGAGATG 60.350 46.154 16.14 10.93 37.57 2.90
5535 8500 0.250901 AAAATGCGACAGTGGAGCCT 60.251 50.000 9.16 0.00 0.00 4.58
5544 8509 2.604373 GCTGCAAGTGTAAAATGCGACA 60.604 45.455 0.00 0.00 42.91 4.35
5573 8539 0.400213 CTCAGCTGGTACAAACCCCA 59.600 55.000 15.13 0.00 46.16 4.96
5596 8562 1.972872 CAGTGACTGTTTCCCAGCTT 58.027 50.000 4.01 0.00 45.68 3.74
5619 8585 1.487976 ACCAGATCTACCCACAGCATG 59.512 52.381 0.00 0.00 46.00 4.06
5622 8588 1.137872 CTCACCAGATCTACCCACAGC 59.862 57.143 0.00 0.00 0.00 4.40
5623 8589 2.739943 TCTCACCAGATCTACCCACAG 58.260 52.381 0.00 0.00 0.00 3.66
5686 8671 1.079543 CCTCTCTGCACCTTCCACG 60.080 63.158 0.00 0.00 0.00 4.94
5693 8678 3.005539 TGCCTCCCTCTCTGCACC 61.006 66.667 0.00 0.00 0.00 5.01
5713 8698 5.579753 AGACCTGCATGAGATTATCCATT 57.420 39.130 0.00 0.00 0.00 3.16
5724 8709 3.070878 TCACACACTTTAGACCTGCATGA 59.929 43.478 0.00 0.00 0.00 3.07
5742 8727 1.518325 CACGTTAATGCCACCTCACA 58.482 50.000 0.00 0.00 0.00 3.58
5756 8741 2.052047 CTGTCACCTTCCCCCACGTT 62.052 60.000 0.00 0.00 0.00 3.99
5761 8746 2.034221 GCACTGTCACCTTCCCCC 59.966 66.667 0.00 0.00 0.00 5.40
5767 8752 1.203063 TCTACTCCAGCACTGTCACCT 60.203 52.381 0.00 0.00 0.00 4.00
5769 8754 1.203523 CCTCTACTCCAGCACTGTCAC 59.796 57.143 0.00 0.00 0.00 3.67
5770 8755 1.075536 TCCTCTACTCCAGCACTGTCA 59.924 52.381 0.00 0.00 0.00 3.58
5790 8775 3.409384 GCTCTGGAAGCCTCCCTT 58.591 61.111 0.00 0.00 45.92 3.95
6158 9143 3.698539 TCTCACTACAAGAGATGGCTCAG 59.301 47.826 0.00 0.00 43.81 3.35
6206 9350 7.761409 TCAATTTTGCATATCAGTAACCTCAC 58.239 34.615 0.00 0.00 0.00 3.51
6250 9394 7.859026 TGCATACCTATTACCCAGTATACAA 57.141 36.000 5.50 0.00 0.00 2.41
6257 9401 7.246171 AGTCTATTGCATACCTATTACCCAG 57.754 40.000 0.00 0.00 0.00 4.45
6263 9407 8.492415 TTGTCCTAGTCTATTGCATACCTATT 57.508 34.615 0.00 0.00 0.00 1.73
6264 9408 8.671987 ATTGTCCTAGTCTATTGCATACCTAT 57.328 34.615 0.00 0.00 0.00 2.57
6265 9409 9.596308 TTATTGTCCTAGTCTATTGCATACCTA 57.404 33.333 0.00 0.00 0.00 3.08
6267 9411 8.148351 TGTTATTGTCCTAGTCTATTGCATACC 58.852 37.037 0.00 0.00 0.00 2.73
6268 9412 8.979574 GTGTTATTGTCCTAGTCTATTGCATAC 58.020 37.037 0.00 0.00 0.00 2.39
6269 9413 8.148351 GGTGTTATTGTCCTAGTCTATTGCATA 58.852 37.037 0.00 0.00 0.00 3.14
6272 9416 6.346096 TGGTGTTATTGTCCTAGTCTATTGC 58.654 40.000 0.00 0.00 0.00 3.56
6273 9417 6.480320 GCTGGTGTTATTGTCCTAGTCTATTG 59.520 42.308 0.00 0.00 0.00 1.90
6274 9418 6.156256 TGCTGGTGTTATTGTCCTAGTCTATT 59.844 38.462 0.00 0.00 0.00 1.73
6275 9419 5.661312 TGCTGGTGTTATTGTCCTAGTCTAT 59.339 40.000 0.00 0.00 0.00 1.98
6276 9420 5.020795 TGCTGGTGTTATTGTCCTAGTCTA 58.979 41.667 0.00 0.00 0.00 2.59
6277 9421 3.838317 TGCTGGTGTTATTGTCCTAGTCT 59.162 43.478 0.00 0.00 0.00 3.24
6278 9422 4.184629 CTGCTGGTGTTATTGTCCTAGTC 58.815 47.826 0.00 0.00 0.00 2.59
6279 9423 3.583086 ACTGCTGGTGTTATTGTCCTAGT 59.417 43.478 0.00 0.00 0.00 2.57
6280 9424 3.935203 CACTGCTGGTGTTATTGTCCTAG 59.065 47.826 0.00 0.00 40.79 3.02
6298 9442 2.555325 TGACTCCTTACACGGTACACTG 59.445 50.000 0.00 0.00 0.00 3.66
6336 9480 9.248291 AGACAACACATTTGTTCAATACATTTC 57.752 29.630 0.00 0.00 44.57 2.17
6339 9483 8.169977 AGAGACAACACATTTGTTCAATACAT 57.830 30.769 0.00 0.00 44.57 2.29
6342 9486 6.073276 CGGAGAGACAACACATTTGTTCAATA 60.073 38.462 0.00 0.00 44.57 1.90
6365 9509 3.368190 CTGAGGCCAGAGAGCACGG 62.368 68.421 5.01 0.00 43.02 4.94
6377 9521 3.923354 TCAGAACTGAAGCTGAGGC 57.077 52.632 1.79 0.00 36.31 4.70
6382 9526 3.080319 GCCAATTCTCAGAACTGAAGCT 58.920 45.455 0.00 0.00 39.39 3.74
6386 9530 4.284490 ACAGTAGCCAATTCTCAGAACTGA 59.716 41.667 7.30 4.45 37.22 3.41
6389 9533 4.569943 TCACAGTAGCCAATTCTCAGAAC 58.430 43.478 0.00 0.00 0.00 3.01
6392 9536 3.529533 CCTCACAGTAGCCAATTCTCAG 58.470 50.000 0.00 0.00 0.00 3.35
6394 9538 2.501723 TCCCTCACAGTAGCCAATTCTC 59.498 50.000 0.00 0.00 0.00 2.87
6395 9539 2.237392 GTCCCTCACAGTAGCCAATTCT 59.763 50.000 0.00 0.00 0.00 2.40
6408 9552 2.094649 CCGACTCTTTAGTGTCCCTCAC 60.095 54.545 6.42 0.00 46.46 3.51
6488 9632 0.108089 TTAGGTAGGCGCGCAATCAA 60.108 50.000 34.42 15.20 0.00 2.57
6569 9713 2.770048 ATCCTTCCCTCGGGCTGG 60.770 66.667 0.00 2.11 34.68 4.85
6643 9787 3.329225 AGCTGTTCTAGGCCTTCTCTTTT 59.671 43.478 12.58 0.00 0.00 2.27
6669 9813 5.351740 GGTGTTAAGACAATCTTGCTCTACC 59.648 44.000 5.00 0.00 37.29 3.18
6670 9814 6.166982 AGGTGTTAAGACAATCTTGCTCTAC 58.833 40.000 5.00 0.00 37.29 2.59
6672 9816 5.234466 AGGTGTTAAGACAATCTTGCTCT 57.766 39.130 5.00 0.00 37.29 4.09
6678 9822 5.711976 CCCATCAAAGGTGTTAAGACAATCT 59.288 40.000 5.00 0.00 37.57 2.40
6681 9825 4.798882 ACCCATCAAAGGTGTTAAGACAA 58.201 39.130 5.00 0.00 37.57 3.18
6705 9849 8.735315 TCCACATAATGATTTAAACGACAACAT 58.265 29.630 0.00 0.00 0.00 2.71
6706 9850 8.100508 TCCACATAATGATTTAAACGACAACA 57.899 30.769 0.00 0.00 0.00 3.33
6707 9851 9.009327 CATCCACATAATGATTTAAACGACAAC 57.991 33.333 0.00 0.00 0.00 3.32
6709 9853 8.275015 ACATCCACATAATGATTTAAACGACA 57.725 30.769 0.00 0.00 0.00 4.35
6710 9854 9.646336 GTACATCCACATAATGATTTAAACGAC 57.354 33.333 0.00 0.00 0.00 4.34
6711 9855 9.384764 TGTACATCCACATAATGATTTAAACGA 57.615 29.630 0.00 0.00 0.00 3.85
6712 9856 9.995957 TTGTACATCCACATAATGATTTAAACG 57.004 29.630 0.00 0.00 0.00 3.60
6718 9862 9.770097 CTAGACTTGTACATCCACATAATGATT 57.230 33.333 0.00 0.00 0.00 2.57
6719 9863 9.147732 TCTAGACTTGTACATCCACATAATGAT 57.852 33.333 0.00 0.00 0.00 2.45
6720 9864 8.533569 TCTAGACTTGTACATCCACATAATGA 57.466 34.615 0.00 0.00 0.00 2.57
6721 9865 8.417106 ACTCTAGACTTGTACATCCACATAATG 58.583 37.037 0.00 0.00 0.00 1.90
6722 9866 8.540507 ACTCTAGACTTGTACATCCACATAAT 57.459 34.615 0.00 0.00 0.00 1.28
6723 9867 7.956328 ACTCTAGACTTGTACATCCACATAA 57.044 36.000 0.00 0.00 0.00 1.90
6724 9868 7.228906 GCTACTCTAGACTTGTACATCCACATA 59.771 40.741 0.00 0.00 0.00 2.29
6730 9874 7.504924 AGATGCTACTCTAGACTTGTACATC 57.495 40.000 0.00 15.76 32.11 3.06
6755 9899 0.389757 GCAACCGGCCCAAACTTTTA 59.610 50.000 0.00 0.00 36.11 1.52
6768 9912 2.797156 GCAGTCAGTATATGAGCAACCG 59.203 50.000 0.00 0.00 39.07 4.44
6771 9915 3.041211 AGGGCAGTCAGTATATGAGCAA 58.959 45.455 0.00 0.00 39.07 3.91
6794 9938 9.498176 TTTCCAAACTTCTGTTAGACCTATAAC 57.502 33.333 0.00 0.00 34.96 1.89
6797 9941 9.232473 GATTTTCCAAACTTCTGTTAGACCTAT 57.768 33.333 0.00 0.00 34.96 2.57
6798 9942 8.437575 AGATTTTCCAAACTTCTGTTAGACCTA 58.562 33.333 0.00 0.00 34.96 3.08
6799 9943 7.290813 AGATTTTCCAAACTTCTGTTAGACCT 58.709 34.615 0.00 0.00 34.96 3.85
6800 9944 7.308649 GGAGATTTTCCAAACTTCTGTTAGACC 60.309 40.741 0.00 0.00 46.01 3.85
6801 9945 7.585867 GGAGATTTTCCAAACTTCTGTTAGAC 58.414 38.462 0.00 0.00 46.01 2.59
6802 9946 7.745620 GGAGATTTTCCAAACTTCTGTTAGA 57.254 36.000 0.00 0.00 46.01 2.10
6803 9947 7.229506 ACAGGAGATTTTCCAAACTTCTGTTAG 59.770 37.037 0.00 0.00 45.20 2.34
6804 9948 7.013274 CACAGGAGATTTTCCAAACTTCTGTTA 59.987 37.037 0.00 0.00 45.20 2.41
6817 9964 6.748132 TGACCAAAATTCACAGGAGATTTTC 58.252 36.000 0.00 0.00 0.00 2.29
6838 9985 6.258727 CACCACAGGATGATATGTAACTTGAC 59.741 42.308 0.00 0.00 39.69 3.18
6851 9998 3.646162 ACTTACAACTCACCACAGGATGA 59.354 43.478 0.00 0.00 39.69 2.92
6853 10000 3.244561 CCACTTACAACTCACCACAGGAT 60.245 47.826 0.00 0.00 0.00 3.24
6882 10029 5.689383 TTCGAAAGGGAAGAGAACAAATG 57.311 39.130 0.00 0.00 0.00 2.32
6883 10030 6.241645 AGATTCGAAAGGGAAGAGAACAAAT 58.758 36.000 0.00 0.00 0.00 2.32
6941 10088 7.697710 CACGCATTCTCAAAGCAAAAGATAATA 59.302 33.333 0.00 0.00 0.00 0.98
6957 10104 1.452108 CCCCTTCCCACGCATTCTC 60.452 63.158 0.00 0.00 0.00 2.87
6986 10134 6.265196 TCAAGTAGCTCAAAACATCCAAACAT 59.735 34.615 0.00 0.00 0.00 2.71
6998 10146 8.939929 CAAGAATTCTGTATCAAGTAGCTCAAA 58.060 33.333 9.17 0.00 0.00 2.69
7015 10163 6.828785 GGGGTGTTACACATATCAAGAATTCT 59.171 38.462 17.67 0.88 35.86 2.40
7016 10164 6.238374 CGGGGTGTTACACATATCAAGAATTC 60.238 42.308 17.67 0.00 35.86 2.17
7017 10165 5.588648 CGGGGTGTTACACATATCAAGAATT 59.411 40.000 17.67 0.00 35.86 2.17
7019 10167 4.509616 CGGGGTGTTACACATATCAAGAA 58.490 43.478 17.67 0.00 35.86 2.52
7020 10168 3.118555 CCGGGGTGTTACACATATCAAGA 60.119 47.826 17.67 0.00 35.86 3.02
7021 10169 3.202906 CCGGGGTGTTACACATATCAAG 58.797 50.000 17.67 1.35 35.86 3.02
7022 10170 2.572556 ACCGGGGTGTTACACATATCAA 59.427 45.455 17.67 0.00 35.86 2.57
7024 10172 2.557317 CACCGGGGTGTTACACATATC 58.443 52.381 17.67 0.00 40.91 1.63
7025 10173 2.702592 CACCGGGGTGTTACACATAT 57.297 50.000 17.67 0.00 40.91 1.78
7063 10211 7.289084 AGCAAAAAGATTAACTTAACCCCAAGA 59.711 33.333 0.00 0.00 37.93 3.02
7065 10213 7.368198 AGCAAAAAGATTAACTTAACCCCAA 57.632 32.000 0.00 0.00 37.93 4.12
7402 10561 5.783100 ATTGACTTTGCAAAATTATGCCG 57.217 34.783 13.84 1.28 45.83 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.