Multiple sequence alignment - TraesCS3B01G280900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G280900 chr3B 100.000 4107 0 0 1 4107 451529253 451533359 0.000000e+00 7585.0
1 TraesCS3B01G280900 chr3A 90.897 3724 156 72 460 4107 471277927 471281543 0.000000e+00 4830.0
2 TraesCS3B01G280900 chr3D 90.499 3526 151 80 333 3769 352612331 352615761 0.000000e+00 4486.0
3 TraesCS3B01G280900 chr3D 85.938 384 23 12 3753 4107 352616390 352616771 8.330000e-102 381.0
4 TraesCS3B01G280900 chr3D 92.793 222 15 1 1102 1323 529250702 529250482 1.840000e-83 320.0
5 TraesCS3B01G280900 chrUn 89.109 303 26 3 2405 2701 109547230 109547531 1.800000e-98 370.0
6 TraesCS3B01G280900 chr6D 96.847 222 6 1 1102 1323 6097889 6097669 1.800000e-98 370.0
7 TraesCS3B01G280900 chr7B 95.946 222 8 1 1099 1320 242512400 242512620 3.900000e-95 359.0
8 TraesCS3B01G280900 chr7B 95.858 169 7 0 1 169 741153064 741152896 1.450000e-69 274.0
9 TraesCS3B01G280900 chr7B 95.210 167 8 0 3 169 738443866 738443700 8.750000e-67 265.0
10 TraesCS3B01G280900 chr7B 91.124 169 9 2 1 169 738276768 738276606 1.490000e-54 224.0
11 TraesCS3B01G280900 chr7B 81.176 85 14 1 1384 1466 453335793 453335709 2.650000e-07 67.6
12 TraesCS3B01G280900 chr6B 96.729 214 6 1 1107 1320 636561159 636561371 5.050000e-94 355.0
13 TraesCS3B01G280900 chr6B 92.353 170 13 0 1 170 124896115 124896284 4.100000e-60 243.0
14 TraesCS3B01G280900 chr7D 95.495 222 9 1 1102 1323 567631329 567631109 1.820000e-93 353.0
15 TraesCS3B01G280900 chr7D 92.308 39 3 0 1429 1467 436879048 436879010 5.740000e-04 56.5
16 TraesCS3B01G280900 chr2B 95.495 222 9 1 1099 1320 220433710 220433930 1.820000e-93 353.0
17 TraesCS3B01G280900 chr4D 92.661 218 15 1 1102 1319 140013089 140012873 3.080000e-81 313.0
18 TraesCS3B01G280900 chr7A 92.857 168 12 0 1 168 541045706 541045539 1.140000e-60 244.0
19 TraesCS3B01G280900 chr7A 88.757 169 19 0 1 169 125992720 125992888 1.500000e-49 207.0
20 TraesCS3B01G280900 chr7A 81.818 77 14 0 1390 1466 485745088 485745164 9.530000e-07 65.8
21 TraesCS3B01G280900 chr2A 92.308 169 13 0 1 169 55140591 55140759 1.480000e-59 241.0
22 TraesCS3B01G280900 chr6A 92.025 163 13 0 7 169 216917482 216917644 3.190000e-56 230.0
23 TraesCS3B01G280900 chr5B 89.697 165 17 0 5 169 193608451 193608615 1.160000e-50 211.0
24 TraesCS3B01G280900 chr5D 87.500 184 14 4 2101 2276 9923112 9922930 1.940000e-48 204.0
25 TraesCS3B01G280900 chr5D 88.732 142 16 0 2136 2277 16233697 16233838 1.520000e-39 174.0
26 TraesCS3B01G280900 chr1A 84.677 124 19 0 1393 1516 543060992 543061115 1.550000e-24 124.0
27 TraesCS3B01G280900 chr1D 83.065 124 21 0 1393 1516 447255155 447255278 3.360000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G280900 chr3B 451529253 451533359 4106 False 7585.0 7585 100.0000 1 4107 1 chr3B.!!$F1 4106
1 TraesCS3B01G280900 chr3A 471277927 471281543 3616 False 4830.0 4830 90.8970 460 4107 1 chr3A.!!$F1 3647
2 TraesCS3B01G280900 chr3D 352612331 352616771 4440 False 2433.5 4486 88.2185 333 4107 2 chr3D.!!$F1 3774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 278 0.027194 CGTGATCGCAGGCTTCAATG 59.973 55.0 7.12 0.00 0.00 2.82 F
970 989 0.247497 CAGAGACGAACGCGAGAGAG 60.247 60.0 15.93 1.26 41.64 3.20 F
982 1001 0.459078 CGAGAGAGCATTGCCTCTGA 59.541 55.0 24.98 0.00 42.06 3.27 F
2034 2063 0.750911 GCCTTCCTTGGGAGATGCTG 60.751 60.0 0.00 0.00 31.21 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1703 1732 0.316204 GCACAAAGCAGACCAAGCAT 59.684 50.000 0.00 0.0 44.79 3.79 R
2070 2099 0.393820 ACACAAATTGGCAAGCCTGG 59.606 50.000 12.96 0.0 36.94 4.45 R
2200 2253 1.948834 TGTCTGCAATGTGAACAGTGG 59.051 47.619 12.29 0.0 41.70 4.00 R
3533 3622 0.101759 GCAAGTACGTCGGGCATAGA 59.898 55.000 0.00 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.965660 TGATAGGCGGGACCCTTC 58.034 61.111 9.41 0.00 40.58 3.46
18 19 2.131709 TGATAGGCGGGACCCTTCG 61.132 63.158 9.41 0.00 40.58 3.79
19 20 2.842936 ATAGGCGGGACCCTTCGG 60.843 66.667 9.41 0.00 40.58 4.30
30 31 2.233305 ACCCTTCGGTCAGATACACT 57.767 50.000 0.00 0.00 38.28 3.55
31 32 1.825474 ACCCTTCGGTCAGATACACTG 59.175 52.381 0.00 0.00 38.28 3.66
32 33 1.825474 CCCTTCGGTCAGATACACTGT 59.175 52.381 0.00 0.00 45.86 3.55
33 34 2.159226 CCCTTCGGTCAGATACACTGTC 60.159 54.545 0.00 0.00 45.86 3.51
34 35 2.492088 CCTTCGGTCAGATACACTGTCA 59.508 50.000 0.00 0.00 45.86 3.58
35 36 3.056821 CCTTCGGTCAGATACACTGTCAA 60.057 47.826 0.00 0.00 45.86 3.18
36 37 4.382040 CCTTCGGTCAGATACACTGTCAAT 60.382 45.833 0.00 0.00 45.86 2.57
37 38 5.163550 CCTTCGGTCAGATACACTGTCAATA 60.164 44.000 0.00 0.00 45.86 1.90
38 39 5.244785 TCGGTCAGATACACTGTCAATAC 57.755 43.478 0.00 0.00 45.86 1.89
39 40 4.035684 CGGTCAGATACACTGTCAATACG 58.964 47.826 0.00 0.00 45.86 3.06
40 41 4.438336 CGGTCAGATACACTGTCAATACGT 60.438 45.833 0.00 0.00 45.86 3.57
41 42 5.220719 CGGTCAGATACACTGTCAATACGTA 60.221 44.000 0.00 0.00 45.86 3.57
42 43 6.512903 CGGTCAGATACACTGTCAATACGTAT 60.513 42.308 1.14 1.14 45.86 3.06
43 44 7.201145 GGTCAGATACACTGTCAATACGTATT 58.799 38.462 15.07 15.07 45.86 1.89
44 45 7.705325 GGTCAGATACACTGTCAATACGTATTT 59.295 37.037 18.06 4.98 45.86 1.40
45 46 9.726232 GTCAGATACACTGTCAATACGTATTTA 57.274 33.333 18.06 8.09 45.86 1.40
68 69 9.697250 TTTATACGCGATTTAGATCTTTTTGTG 57.303 29.630 15.93 0.00 0.00 3.33
69 70 5.856126 ACGCGATTTAGATCTTTTTGTGA 57.144 34.783 15.93 0.00 0.00 3.58
70 71 5.618561 ACGCGATTTAGATCTTTTTGTGAC 58.381 37.500 15.93 0.00 0.00 3.67
71 72 5.022021 CGCGATTTAGATCTTTTTGTGACC 58.978 41.667 0.00 0.00 0.00 4.02
72 73 5.390461 CGCGATTTAGATCTTTTTGTGACCA 60.390 40.000 0.00 0.00 0.00 4.02
73 74 5.795441 GCGATTTAGATCTTTTTGTGACCAC 59.205 40.000 0.00 0.00 0.00 4.16
74 75 6.348540 GCGATTTAGATCTTTTTGTGACCACT 60.349 38.462 0.00 0.00 0.00 4.00
75 76 7.237173 CGATTTAGATCTTTTTGTGACCACTC 58.763 38.462 0.00 0.00 0.00 3.51
76 77 6.539649 TTTAGATCTTTTTGTGACCACTCG 57.460 37.500 0.00 0.00 0.00 4.18
77 78 2.808543 AGATCTTTTTGTGACCACTCGC 59.191 45.455 1.62 0.00 0.00 5.03
78 79 1.305201 TCTTTTTGTGACCACTCGCC 58.695 50.000 1.62 0.00 0.00 5.54
79 80 0.310854 CTTTTTGTGACCACTCGCCC 59.689 55.000 1.62 0.00 0.00 6.13
80 81 1.104577 TTTTTGTGACCACTCGCCCC 61.105 55.000 1.62 0.00 0.00 5.80
81 82 2.272230 TTTTGTGACCACTCGCCCCA 62.272 55.000 1.62 0.00 0.00 4.96
82 83 2.272230 TTTGTGACCACTCGCCCCAA 62.272 55.000 1.62 0.00 0.00 4.12
83 84 2.112297 GTGACCACTCGCCCCAAA 59.888 61.111 0.00 0.00 0.00 3.28
84 85 2.112297 TGACCACTCGCCCCAAAC 59.888 61.111 0.00 0.00 0.00 2.93
85 86 2.430367 GACCACTCGCCCCAAACT 59.570 61.111 0.00 0.00 0.00 2.66
86 87 1.228154 GACCACTCGCCCCAAACTT 60.228 57.895 0.00 0.00 0.00 2.66
87 88 1.515521 GACCACTCGCCCCAAACTTG 61.516 60.000 0.00 0.00 0.00 3.16
88 89 1.228124 CCACTCGCCCCAAACTTGA 60.228 57.895 0.00 0.00 0.00 3.02
89 90 0.609131 CCACTCGCCCCAAACTTGAT 60.609 55.000 0.00 0.00 0.00 2.57
90 91 1.339631 CCACTCGCCCCAAACTTGATA 60.340 52.381 0.00 0.00 0.00 2.15
91 92 1.737793 CACTCGCCCCAAACTTGATAC 59.262 52.381 0.00 0.00 0.00 2.24
92 93 1.628846 ACTCGCCCCAAACTTGATACT 59.371 47.619 0.00 0.00 0.00 2.12
93 94 2.009774 CTCGCCCCAAACTTGATACTG 58.990 52.381 0.00 0.00 0.00 2.74
94 95 1.626321 TCGCCCCAAACTTGATACTGA 59.374 47.619 0.00 0.00 0.00 3.41
95 96 1.737793 CGCCCCAAACTTGATACTGAC 59.262 52.381 0.00 0.00 0.00 3.51
96 97 2.790433 GCCCCAAACTTGATACTGACA 58.210 47.619 0.00 0.00 0.00 3.58
97 98 2.488153 GCCCCAAACTTGATACTGACAC 59.512 50.000 0.00 0.00 0.00 3.67
98 99 2.742053 CCCCAAACTTGATACTGACACG 59.258 50.000 0.00 0.00 0.00 4.49
99 100 3.399330 CCCAAACTTGATACTGACACGT 58.601 45.455 0.00 0.00 0.00 4.49
100 101 4.561938 CCCCAAACTTGATACTGACACGTA 60.562 45.833 0.00 0.00 0.00 3.57
101 102 4.992319 CCCAAACTTGATACTGACACGTAA 59.008 41.667 0.00 0.00 0.00 3.18
102 103 5.467399 CCCAAACTTGATACTGACACGTAAA 59.533 40.000 0.00 0.00 0.00 2.01
103 104 6.017770 CCCAAACTTGATACTGACACGTAAAA 60.018 38.462 0.00 0.00 0.00 1.52
104 105 7.411274 CCAAACTTGATACTGACACGTAAAAA 58.589 34.615 0.00 0.00 0.00 1.94
105 106 8.073768 CCAAACTTGATACTGACACGTAAAAAT 58.926 33.333 0.00 0.00 0.00 1.82
106 107 9.445786 CAAACTTGATACTGACACGTAAAAATT 57.554 29.630 0.00 0.00 0.00 1.82
109 110 8.430063 ACTTGATACTGACACGTAAAAATTACG 58.570 33.333 18.09 18.09 45.44 3.18
110 111 8.518151 TTGATACTGACACGTAAAAATTACGA 57.482 30.769 24.40 5.82 42.94 3.43
111 112 8.518151 TGATACTGACACGTAAAAATTACGAA 57.482 30.769 24.40 9.55 42.94 3.85
112 113 8.427012 TGATACTGACACGTAAAAATTACGAAC 58.573 33.333 24.40 15.83 42.94 3.95
113 114 6.586868 ACTGACACGTAAAAATTACGAACA 57.413 33.333 24.40 18.43 42.94 3.18
114 115 6.642917 ACTGACACGTAAAAATTACGAACAG 58.357 36.000 24.40 25.01 42.94 3.16
115 116 6.256321 ACTGACACGTAAAAATTACGAACAGT 59.744 34.615 24.40 25.45 42.94 3.55
116 117 6.412460 TGACACGTAAAAATTACGAACAGTG 58.588 36.000 24.40 15.59 42.94 3.66
117 118 5.740406 ACACGTAAAAATTACGAACAGTGG 58.260 37.500 24.40 10.02 42.94 4.00
118 119 5.294060 ACACGTAAAAATTACGAACAGTGGT 59.706 36.000 24.40 10.48 42.94 4.16
119 120 6.478344 ACACGTAAAAATTACGAACAGTGGTA 59.522 34.615 24.40 0.00 42.94 3.25
120 121 6.787043 CACGTAAAAATTACGAACAGTGGTAC 59.213 38.462 24.40 0.00 42.94 3.34
121 122 6.073819 ACGTAAAAATTACGAACAGTGGTACC 60.074 38.462 24.40 4.43 42.94 3.34
122 123 6.073873 CGTAAAAATTACGAACAGTGGTACCA 60.074 38.462 11.60 11.60 42.94 3.25
123 124 6.696441 AAAAATTACGAACAGTGGTACCAA 57.304 33.333 18.31 0.00 0.00 3.67
124 125 6.887626 AAAATTACGAACAGTGGTACCAAT 57.112 33.333 18.31 13.91 0.00 3.16
125 126 6.490566 AAATTACGAACAGTGGTACCAATC 57.509 37.500 18.31 11.69 0.00 2.67
126 127 4.877378 TTACGAACAGTGGTACCAATCT 57.123 40.909 18.31 7.80 0.00 2.40
127 128 3.040147 ACGAACAGTGGTACCAATCTG 57.960 47.619 24.12 24.12 0.00 2.90
128 129 1.732259 CGAACAGTGGTACCAATCTGC 59.268 52.381 25.16 8.73 0.00 4.26
129 130 2.778299 GAACAGTGGTACCAATCTGCA 58.222 47.619 25.16 0.00 0.00 4.41
130 131 3.347216 GAACAGTGGTACCAATCTGCAT 58.653 45.455 25.16 17.36 0.00 3.96
131 132 2.715046 ACAGTGGTACCAATCTGCATG 58.285 47.619 25.16 11.80 0.00 4.06
132 133 2.040278 ACAGTGGTACCAATCTGCATGT 59.960 45.455 25.16 12.37 0.00 3.21
133 134 3.263170 ACAGTGGTACCAATCTGCATGTA 59.737 43.478 25.16 0.00 0.00 2.29
134 135 4.260985 CAGTGGTACCAATCTGCATGTAA 58.739 43.478 18.31 0.00 0.00 2.41
135 136 4.883585 CAGTGGTACCAATCTGCATGTAAT 59.116 41.667 18.31 0.00 0.00 1.89
149 150 4.724074 CATGTAATGCCTCAATTGTGGT 57.276 40.909 23.73 10.09 37.62 4.16
150 151 5.833406 CATGTAATGCCTCAATTGTGGTA 57.167 39.130 23.73 20.91 37.62 3.25
151 152 6.395426 CATGTAATGCCTCAATTGTGGTAT 57.605 37.500 23.73 22.03 37.62 2.73
152 153 6.808829 CATGTAATGCCTCAATTGTGGTATT 58.191 36.000 31.74 31.74 43.17 1.89
153 154 6.849085 TGTAATGCCTCAATTGTGGTATTT 57.151 33.333 33.21 22.41 41.71 1.40
154 155 6.862209 TGTAATGCCTCAATTGTGGTATTTC 58.138 36.000 33.21 29.27 41.71 2.17
155 156 6.663093 TGTAATGCCTCAATTGTGGTATTTCT 59.337 34.615 33.21 20.14 41.71 2.52
156 157 5.587388 ATGCCTCAATTGTGGTATTTCTG 57.413 39.130 23.73 1.11 31.53 3.02
157 158 4.406456 TGCCTCAATTGTGGTATTTCTGT 58.594 39.130 23.73 0.00 0.00 3.41
158 159 5.565509 TGCCTCAATTGTGGTATTTCTGTA 58.434 37.500 23.73 0.00 0.00 2.74
159 160 5.414454 TGCCTCAATTGTGGTATTTCTGTAC 59.586 40.000 23.73 7.28 0.00 2.90
160 161 5.414454 GCCTCAATTGTGGTATTTCTGTACA 59.586 40.000 23.73 0.00 0.00 2.90
161 162 6.072175 GCCTCAATTGTGGTATTTCTGTACAA 60.072 38.462 23.73 0.00 35.93 2.41
162 163 7.362920 GCCTCAATTGTGGTATTTCTGTACAAT 60.363 37.037 23.73 0.00 42.03 2.71
163 164 8.522830 CCTCAATTGTGGTATTTCTGTACAATT 58.477 33.333 16.81 0.00 46.78 2.32
169 170 8.246908 TGTGGTATTTCTGTACAATTAACTCG 57.753 34.615 0.00 0.00 0.00 4.18
170 171 8.089597 TGTGGTATTTCTGTACAATTAACTCGA 58.910 33.333 0.00 0.00 0.00 4.04
171 172 8.378421 GTGGTATTTCTGTACAATTAACTCGAC 58.622 37.037 0.00 0.00 0.00 4.20
172 173 7.274033 TGGTATTTCTGTACAATTAACTCGACG 59.726 37.037 0.00 0.00 0.00 5.12
173 174 7.485913 GGTATTTCTGTACAATTAACTCGACGA 59.514 37.037 0.00 0.00 0.00 4.20
174 175 7.878477 ATTTCTGTACAATTAACTCGACGAA 57.122 32.000 0.00 0.00 0.00 3.85
175 176 7.697352 TTTCTGTACAATTAACTCGACGAAA 57.303 32.000 0.00 0.00 0.00 3.46
176 177 6.922980 TCTGTACAATTAACTCGACGAAAG 57.077 37.500 0.00 0.00 0.00 2.62
189 190 1.167851 ACGAAAGTGGACATGCATGG 58.832 50.000 29.41 12.50 46.97 3.66
190 191 0.179156 CGAAAGTGGACATGCATGGC 60.179 55.000 29.41 27.45 34.16 4.40
191 192 0.889994 GAAAGTGGACATGCATGGCA 59.110 50.000 32.84 16.85 44.86 4.92
192 193 0.892755 AAAGTGGACATGCATGGCAG 59.107 50.000 32.84 7.58 43.65 4.85
193 194 1.601419 AAGTGGACATGCATGGCAGC 61.601 55.000 32.84 23.41 43.65 5.25
200 201 3.290567 TGCATGGCAGCAATCACC 58.709 55.556 8.79 0.00 42.46 4.02
201 202 2.103538 GCATGGCAGCAATCACCG 59.896 61.111 0.00 0.00 0.00 4.94
202 203 2.802792 CATGGCAGCAATCACCGG 59.197 61.111 0.00 0.00 0.00 5.28
203 204 1.750018 CATGGCAGCAATCACCGGA 60.750 57.895 9.46 0.00 0.00 5.14
204 205 1.105167 CATGGCAGCAATCACCGGAT 61.105 55.000 9.46 0.00 34.43 4.18
205 206 1.105167 ATGGCAGCAATCACCGGATG 61.105 55.000 9.46 2.48 32.92 3.51
206 207 1.750399 GGCAGCAATCACCGGATGT 60.750 57.895 9.46 0.00 32.92 3.06
207 208 1.430632 GCAGCAATCACCGGATGTG 59.569 57.895 9.46 0.00 46.88 3.21
208 209 1.430632 CAGCAATCACCGGATGTGC 59.569 57.895 9.46 12.32 45.03 4.57
209 210 1.750399 AGCAATCACCGGATGTGCC 60.750 57.895 9.46 0.00 45.03 5.01
210 211 2.045708 GCAATCACCGGATGTGCCA 61.046 57.895 9.46 0.00 45.03 4.92
211 212 1.386525 GCAATCACCGGATGTGCCAT 61.387 55.000 9.46 0.00 45.03 4.40
212 213 0.664761 CAATCACCGGATGTGCCATC 59.335 55.000 9.46 6.63 45.03 3.51
213 214 0.548031 AATCACCGGATGTGCCATCT 59.452 50.000 9.46 0.00 45.03 2.90
214 215 0.548031 ATCACCGGATGTGCCATCTT 59.452 50.000 9.46 0.00 45.03 2.40
215 216 0.327924 TCACCGGATGTGCCATCTTT 59.672 50.000 9.46 0.00 45.03 2.52
216 217 0.734889 CACCGGATGTGCCATCTTTC 59.265 55.000 9.46 0.00 38.34 2.62
217 218 0.620556 ACCGGATGTGCCATCTTTCT 59.379 50.000 9.46 0.00 35.94 2.52
218 219 1.004745 ACCGGATGTGCCATCTTTCTT 59.995 47.619 9.46 0.00 35.94 2.52
219 220 1.672881 CCGGATGTGCCATCTTTCTTC 59.327 52.381 0.00 0.00 35.94 2.87
220 221 1.328680 CGGATGTGCCATCTTTCTTCG 59.671 52.381 12.89 5.47 35.94 3.79
221 222 1.064654 GGATGTGCCATCTTTCTTCGC 59.935 52.381 12.89 0.00 36.34 4.70
222 223 1.739466 GATGTGCCATCTTTCTTCGCA 59.261 47.619 7.65 0.00 0.00 5.10
223 224 1.159285 TGTGCCATCTTTCTTCGCAG 58.841 50.000 0.00 0.00 0.00 5.18
224 225 1.160137 GTGCCATCTTTCTTCGCAGT 58.840 50.000 0.00 0.00 0.00 4.40
225 226 1.129437 GTGCCATCTTTCTTCGCAGTC 59.871 52.381 0.00 0.00 0.00 3.51
226 227 0.371645 GCCATCTTTCTTCGCAGTCG 59.628 55.000 0.00 0.00 0.00 4.18
227 228 1.714794 CCATCTTTCTTCGCAGTCGT 58.285 50.000 0.00 0.00 36.96 4.34
228 229 1.391485 CCATCTTTCTTCGCAGTCGTG 59.609 52.381 0.00 0.00 36.96 4.35
229 230 1.391485 CATCTTTCTTCGCAGTCGTGG 59.609 52.381 0.00 0.00 36.96 4.94
230 231 0.944311 TCTTTCTTCGCAGTCGTGGC 60.944 55.000 0.00 0.00 36.96 5.01
255 256 2.430367 GGGTGTTCCGACTGGCTT 59.570 61.111 0.00 0.00 34.14 4.35
256 257 1.671379 GGGTGTTCCGACTGGCTTC 60.671 63.158 0.00 0.00 34.14 3.86
257 258 1.371558 GGTGTTCCGACTGGCTTCT 59.628 57.895 0.00 0.00 34.14 2.85
258 259 0.670854 GGTGTTCCGACTGGCTTCTC 60.671 60.000 0.00 0.00 34.14 2.87
259 260 1.009389 GTGTTCCGACTGGCTTCTCG 61.009 60.000 0.00 0.00 34.14 4.04
260 261 1.289380 GTTCCGACTGGCTTCTCGT 59.711 57.895 0.00 0.00 34.14 4.18
261 262 1.009389 GTTCCGACTGGCTTCTCGTG 61.009 60.000 0.00 0.00 34.14 4.35
262 263 1.176619 TTCCGACTGGCTTCTCGTGA 61.177 55.000 0.00 0.00 34.14 4.35
263 264 0.965866 TCCGACTGGCTTCTCGTGAT 60.966 55.000 0.00 0.00 34.14 3.06
264 265 0.526524 CCGACTGGCTTCTCGTGATC 60.527 60.000 0.00 0.00 0.00 2.92
265 266 0.863538 CGACTGGCTTCTCGTGATCG 60.864 60.000 0.00 0.00 38.55 3.69
266 267 1.142778 GACTGGCTTCTCGTGATCGC 61.143 60.000 0.00 0.00 36.96 4.58
267 268 1.153765 CTGGCTTCTCGTGATCGCA 60.154 57.895 7.12 0.00 36.96 5.10
268 269 1.144565 CTGGCTTCTCGTGATCGCAG 61.145 60.000 7.12 3.48 36.96 5.18
269 270 1.880340 GGCTTCTCGTGATCGCAGG 60.880 63.158 7.12 0.00 36.96 4.85
270 271 2.520904 GCTTCTCGTGATCGCAGGC 61.521 63.158 7.12 0.00 36.96 4.85
271 272 1.140589 CTTCTCGTGATCGCAGGCT 59.859 57.895 7.12 0.00 36.96 4.58
272 273 0.459237 CTTCTCGTGATCGCAGGCTT 60.459 55.000 7.12 0.00 36.96 4.35
273 274 0.458543 TTCTCGTGATCGCAGGCTTC 60.459 55.000 7.12 0.00 36.96 3.86
274 275 1.153765 CTCGTGATCGCAGGCTTCA 60.154 57.895 7.12 0.00 36.96 3.02
275 276 0.737367 CTCGTGATCGCAGGCTTCAA 60.737 55.000 7.12 0.00 36.96 2.69
276 277 0.108186 TCGTGATCGCAGGCTTCAAT 60.108 50.000 7.12 0.00 36.96 2.57
277 278 0.027194 CGTGATCGCAGGCTTCAATG 59.973 55.000 7.12 0.00 0.00 2.82
278 279 0.248377 GTGATCGCAGGCTTCAATGC 60.248 55.000 0.16 0.00 39.09 3.56
282 283 2.570181 GCAGGCTTCAATGCGCTT 59.430 55.556 9.73 0.00 31.87 4.68
283 284 1.515736 GCAGGCTTCAATGCGCTTC 60.516 57.895 9.73 0.00 31.87 3.86
284 285 1.878070 CAGGCTTCAATGCGCTTCA 59.122 52.632 9.73 0.00 0.00 3.02
285 286 0.454600 CAGGCTTCAATGCGCTTCAT 59.545 50.000 9.73 0.00 36.87 2.57
286 287 0.737219 AGGCTTCAATGCGCTTCATC 59.263 50.000 9.73 0.00 33.40 2.92
287 288 0.452987 GGCTTCAATGCGCTTCATCA 59.547 50.000 9.73 0.00 33.40 3.07
288 289 1.066605 GGCTTCAATGCGCTTCATCAT 59.933 47.619 9.73 0.00 33.40 2.45
289 290 2.480759 GGCTTCAATGCGCTTCATCATT 60.481 45.455 9.73 0.00 33.40 2.57
290 291 3.184541 GCTTCAATGCGCTTCATCATTT 58.815 40.909 9.73 0.00 33.40 2.32
291 292 3.000078 GCTTCAATGCGCTTCATCATTTG 60.000 43.478 9.73 0.00 33.40 2.32
292 293 3.153676 TCAATGCGCTTCATCATTTGG 57.846 42.857 9.73 0.00 33.40 3.28
293 294 2.159212 TCAATGCGCTTCATCATTTGGG 60.159 45.455 9.73 0.00 33.40 4.12
294 295 1.766494 ATGCGCTTCATCATTTGGGA 58.234 45.000 9.73 0.00 0.00 4.37
295 296 1.543607 TGCGCTTCATCATTTGGGAA 58.456 45.000 9.73 0.00 0.00 3.97
296 297 1.473677 TGCGCTTCATCATTTGGGAAG 59.526 47.619 9.73 0.00 40.69 3.46
297 298 1.745087 GCGCTTCATCATTTGGGAAGA 59.255 47.619 0.00 0.00 40.28 2.87
298 299 2.164219 GCGCTTCATCATTTGGGAAGAA 59.836 45.455 0.00 0.00 40.28 2.52
299 300 3.367292 GCGCTTCATCATTTGGGAAGAAA 60.367 43.478 0.00 0.00 40.28 2.52
300 301 4.808558 CGCTTCATCATTTGGGAAGAAAA 58.191 39.130 13.49 0.00 40.28 2.29
301 302 5.229423 CGCTTCATCATTTGGGAAGAAAAA 58.771 37.500 13.49 0.00 40.28 1.94
302 303 5.346822 CGCTTCATCATTTGGGAAGAAAAAG 59.653 40.000 13.49 0.00 40.28 2.27
303 304 5.640783 GCTTCATCATTTGGGAAGAAAAAGG 59.359 40.000 13.49 0.00 40.28 3.11
304 305 5.151297 TCATCATTTGGGAAGAAAAAGGC 57.849 39.130 0.00 0.00 0.00 4.35
305 306 4.020307 TCATCATTTGGGAAGAAAAAGGCC 60.020 41.667 0.00 0.00 0.00 5.19
306 307 2.637382 TCATTTGGGAAGAAAAAGGCCC 59.363 45.455 0.00 0.00 41.08 5.80
307 308 1.429930 TTTGGGAAGAAAAAGGCCCC 58.570 50.000 0.00 0.00 39.93 5.80
308 309 0.565674 TTGGGAAGAAAAAGGCCCCT 59.434 50.000 0.00 0.00 39.93 4.79
309 310 1.462426 TGGGAAGAAAAAGGCCCCTA 58.538 50.000 0.00 0.00 39.93 3.53
310 311 2.007636 TGGGAAGAAAAAGGCCCCTAT 58.992 47.619 0.00 0.00 39.93 2.57
311 312 3.203059 TGGGAAGAAAAAGGCCCCTATA 58.797 45.455 0.00 0.00 39.93 1.31
312 313 3.598782 TGGGAAGAAAAAGGCCCCTATAA 59.401 43.478 0.00 0.00 39.93 0.98
313 314 4.046103 TGGGAAGAAAAAGGCCCCTATAAA 59.954 41.667 0.00 0.00 39.93 1.40
314 315 5.027460 GGGAAGAAAAAGGCCCCTATAAAA 58.973 41.667 0.00 0.00 34.39 1.52
315 316 5.486063 GGGAAGAAAAAGGCCCCTATAAAAA 59.514 40.000 0.00 0.00 34.39 1.94
361 362 5.251832 GTTTACCACAACAAAATTGCAACG 58.748 37.500 0.00 0.00 0.00 4.10
407 408 2.973420 GGGCTACGATTCCGAGTTG 58.027 57.895 0.00 0.00 39.50 3.16
519 521 2.203669 TTCCTCCAACGGTCCGGA 60.204 61.111 17.28 0.00 0.00 5.14
932 951 1.519455 GCATTCACGGACTAGCGCT 60.519 57.895 17.26 17.26 0.00 5.92
958 977 1.201181 CTCTCACCAGTTCCAGAGACG 59.799 57.143 0.00 0.00 35.34 4.18
970 989 0.247497 CAGAGACGAACGCGAGAGAG 60.247 60.000 15.93 1.26 41.64 3.20
982 1001 0.459078 CGAGAGAGCATTGCCTCTGA 59.541 55.000 24.98 0.00 42.06 3.27
1310 1332 3.141488 CCTGGTAGGTCGCTCGCT 61.141 66.667 0.00 0.00 0.00 4.93
1311 1333 2.409651 CTGGTAGGTCGCTCGCTC 59.590 66.667 0.00 0.00 0.00 5.03
1312 1334 3.456431 CTGGTAGGTCGCTCGCTCG 62.456 68.421 0.00 0.00 0.00 5.03
1313 1335 4.908877 GGTAGGTCGCTCGCTCGC 62.909 72.222 0.00 0.00 0.00 5.03
1314 1336 4.908877 GTAGGTCGCTCGCTCGCC 62.909 72.222 0.00 0.00 0.00 5.54
1342 1364 4.951963 CCCTCGCTCCGATTCCGC 62.952 72.222 0.00 0.00 34.61 5.54
1343 1365 4.207281 CCTCGCTCCGATTCCGCA 62.207 66.667 0.00 0.00 34.61 5.69
1344 1366 2.956964 CTCGCTCCGATTCCGCAC 60.957 66.667 0.00 0.00 34.61 5.34
1374 1396 2.765785 CTTCTTCAGCGTCGCGTG 59.234 61.111 12.30 10.64 0.00 5.34
1385 1407 0.940519 CGTCGCGTGTCTTTTGGGTA 60.941 55.000 5.77 0.00 0.00 3.69
1499 1521 0.817229 TCACGGTCAAGTGCATGCAA 60.817 50.000 24.58 3.23 41.61 4.08
1632 1654 6.430308 CGTCAAGGAAGCAGAGGTATATACTA 59.570 42.308 12.54 0.00 0.00 1.82
1633 1655 7.573469 CGTCAAGGAAGCAGAGGTATATACTAC 60.573 44.444 12.54 7.17 0.00 2.73
1634 1656 7.449086 GTCAAGGAAGCAGAGGTATATACTACT 59.551 40.741 12.54 9.11 0.00 2.57
1659 1681 8.770438 TTTGGTTCAAGGATTAATTATGTTGC 57.230 30.769 0.00 0.00 0.00 4.17
1668 1690 9.860650 AAGGATTAATTATGTTGCATACCACTA 57.139 29.630 0.00 0.00 0.00 2.74
1673 1695 6.844696 ATTATGTTGCATACCACTACTTCG 57.155 37.500 0.00 0.00 0.00 3.79
1674 1696 3.671008 TGTTGCATACCACTACTTCGT 57.329 42.857 0.00 0.00 0.00 3.85
1675 1697 3.997762 TGTTGCATACCACTACTTCGTT 58.002 40.909 0.00 0.00 0.00 3.85
1676 1698 3.743911 TGTTGCATACCACTACTTCGTTG 59.256 43.478 0.00 0.00 0.00 4.10
1677 1699 2.343101 TGCATACCACTACTTCGTTGC 58.657 47.619 0.00 0.00 0.00 4.17
1678 1700 2.289133 TGCATACCACTACTTCGTTGCA 60.289 45.455 0.00 0.00 36.58 4.08
1681 1703 4.727734 GCATACCACTACTTCGTTGCATTG 60.728 45.833 0.00 0.00 0.00 2.82
1682 1704 1.535462 ACCACTACTTCGTTGCATTGC 59.465 47.619 0.46 0.46 0.00 3.56
1718 1747 1.815003 GCACTATGCTTGGTCTGCTTT 59.185 47.619 0.00 0.00 40.96 3.51
1740 1769 8.836413 GCTTTGTGCAAATAGATTACCATACTA 58.164 33.333 0.00 0.00 42.31 1.82
1893 1922 7.308469 GCCCTCTTCATGATGAAAGATTGATAC 60.308 40.741 9.39 0.00 35.73 2.24
2034 2063 0.750911 GCCTTCCTTGGGAGATGCTG 60.751 60.000 0.00 0.00 31.21 4.41
2070 2099 3.096489 TGAAAGTTGTTCTTGCCATGC 57.904 42.857 0.00 0.00 36.40 4.06
2083 2112 2.363975 CCATGCCAGGCTTGCCAAT 61.364 57.895 19.95 0.00 33.27 3.16
2122 2175 8.232412 AGTGTATAGTCCTCCACAATCCTATTA 58.768 37.037 0.00 0.00 0.00 0.98
2123 2176 9.036980 GTGTATAGTCCTCCACAATCCTATTAT 57.963 37.037 0.00 0.00 0.00 1.28
2200 2253 1.133790 GATGTCTCCATGTTTGGCTGC 59.866 52.381 0.00 0.00 43.29 5.25
2304 2357 2.350522 GGCGCAATCAAGAGAGAAAGA 58.649 47.619 10.83 0.00 0.00 2.52
2369 2422 6.929049 CGAATAGTCTGGGCATATAAACAAGA 59.071 38.462 0.00 0.00 0.00 3.02
2500 2553 1.550072 AGCTCTCCTGCTGTTTCTCTC 59.450 52.381 0.00 0.00 42.33 3.20
2632 2685 5.455056 ACTCACGTTGTTCAGAGAGTATT 57.545 39.130 5.44 0.00 34.83 1.89
2809 2862 0.857311 GCAACCATTTCGCGACATCG 60.857 55.000 9.15 2.57 43.27 3.84
2929 2982 2.654863 CCACCACTTCAAAGACAAGGT 58.345 47.619 0.00 0.00 0.00 3.50
2938 2991 4.090761 TCAAAGACAAGGTTCTGCTGAT 57.909 40.909 0.00 0.00 0.00 2.90
3040 3093 4.629092 AGAGGTTGAACGGTTTAACTCTC 58.371 43.478 22.54 23.17 0.00 3.20
3283 3339 2.423538 GCTGCATTACAAAATCTCCGGT 59.576 45.455 0.00 0.00 0.00 5.28
3375 3439 8.598202 TTGATGGTAATTGAGTACTACTACCA 57.402 34.615 19.36 19.36 36.58 3.25
3376 3440 8.777578 TGATGGTAATTGAGTACTACTACCAT 57.222 34.615 24.16 24.16 42.28 3.55
3378 3442 7.592885 TGGTAATTGAGTACTACTACCATCC 57.407 40.000 15.69 5.94 29.53 3.51
3379 3443 6.552350 TGGTAATTGAGTACTACTACCATCCC 59.448 42.308 15.69 2.83 29.53 3.85
3380 3444 6.781507 GGTAATTGAGTACTACTACCATCCCT 59.218 42.308 13.46 0.00 0.00 4.20
3381 3445 6.980416 AATTGAGTACTACTACCATCCCTC 57.020 41.667 0.00 0.00 0.00 4.30
3385 3449 6.441222 TGAGTACTACTACCATCCCTCAATT 58.559 40.000 0.00 0.00 0.00 2.32
3387 3451 7.069578 TGAGTACTACTACCATCCCTCAATTTC 59.930 40.741 0.00 0.00 0.00 2.17
3391 3463 7.699878 ACTACTACCATCCCTCAATTTCTTTT 58.300 34.615 0.00 0.00 0.00 2.27
3424 3496 0.172803 CATCTGCTCCTTGCTTTGCC 59.827 55.000 0.00 0.00 43.37 4.52
3466 3538 6.583562 AGTGTATATCTCCTTACTGCAAACC 58.416 40.000 0.00 0.00 0.00 3.27
3486 3558 4.819769 ACCGCAGCAATTTTGAATTGTAT 58.180 34.783 13.18 2.61 0.00 2.29
3487 3559 5.960113 ACCGCAGCAATTTTGAATTGTATA 58.040 33.333 13.18 0.00 0.00 1.47
3488 3560 5.804979 ACCGCAGCAATTTTGAATTGTATAC 59.195 36.000 13.18 0.00 0.00 1.47
3489 3561 5.804473 CCGCAGCAATTTTGAATTGTATACA 59.196 36.000 0.08 0.08 0.00 2.29
3490 3562 6.476380 CCGCAGCAATTTTGAATTGTATACAT 59.524 34.615 6.36 0.00 0.00 2.29
3491 3563 7.010367 CCGCAGCAATTTTGAATTGTATACATT 59.990 33.333 6.36 0.00 0.00 2.71
3492 3564 7.842239 CGCAGCAATTTTGAATTGTATACATTG 59.158 33.333 6.36 6.78 0.00 2.82
3493 3565 8.871862 GCAGCAATTTTGAATTGTATACATTGA 58.128 29.630 6.36 0.00 0.00 2.57
3495 3567 9.369904 AGCAATTTTGAATTGTATACATTGACC 57.630 29.630 6.36 0.00 0.00 4.02
3496 3568 9.369904 GCAATTTTGAATTGTATACATTGACCT 57.630 29.630 6.36 0.00 0.00 3.85
3524 3613 3.430042 ACTGAGATTTGTCTGCACCAT 57.570 42.857 0.00 0.00 0.00 3.55
3533 3622 6.832384 AGATTTGTCTGCACCATATCTCAATT 59.168 34.615 8.08 0.00 28.42 2.32
3537 3626 7.071069 TGTCTGCACCATATCTCAATTCTAT 57.929 36.000 0.00 0.00 0.00 1.98
3553 3642 0.874607 CTATGCCCGACGTACTTGCC 60.875 60.000 0.00 0.00 0.00 4.52
3556 3645 2.807895 CCCGACGTACTTGCCACG 60.808 66.667 0.00 0.00 44.80 4.94
3633 3722 5.416083 TGTGAACAACATTATAGTCCCTCG 58.584 41.667 0.00 0.00 32.36 4.63
3664 3777 5.499139 TGAGTTTCAACCTTGTTTAGCTG 57.501 39.130 0.00 0.00 0.00 4.24
3671 3784 9.308318 GTTTCAACCTTGTTTAGCTGAAATTAA 57.692 29.630 0.00 0.00 36.94 1.40
3741 3858 7.094631 TGAATGTTGAATTAGTAGTACGTGCT 58.905 34.615 11.87 11.87 0.00 4.40
3798 4561 4.404394 TGCTGTAATACAGGAGGAAATCGA 59.596 41.667 20.56 0.00 46.01 3.59
3869 4632 4.663636 ATAGTTTTTCGAGGAACTTGCG 57.336 40.909 17.17 0.00 41.55 4.85
3921 4684 2.606272 GAGTATAACCGGCCGAAAACAG 59.394 50.000 30.73 11.56 0.00 3.16
3954 4717 7.793927 AAACTGAAGACAAGAAAACTCTAGG 57.206 36.000 0.00 0.00 0.00 3.02
3993 4785 3.576982 TCAGGGAAGTGTTTAGACATCGT 59.423 43.478 0.00 0.00 38.23 3.73
3996 4788 5.014858 AGGGAAGTGTTTAGACATCGTCTA 58.985 41.667 0.00 0.00 41.51 2.59
4040 4832 2.159382 CCCAAAACCGCTAGACACAAT 58.841 47.619 0.00 0.00 0.00 2.71
4063 4855 0.874175 TGTGCAACCAAGACGACTCG 60.874 55.000 0.00 0.00 34.36 4.18
4100 4892 1.959985 CTCTATGAGACTCGCCACCAT 59.040 52.381 0.00 0.00 0.00 3.55
4101 4893 2.363680 CTCTATGAGACTCGCCACCATT 59.636 50.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.131709 CGAAGGGTCCCGCCTATCA 61.132 63.158 0.99 0.00 37.43 2.15
1 2 2.735237 CGAAGGGTCCCGCCTATC 59.265 66.667 0.99 0.00 37.43 2.08
12 13 2.586258 CAGTGTATCTGACCGAAGGG 57.414 55.000 0.00 0.00 45.77 3.95
14 15 3.850122 TGACAGTGTATCTGACCGAAG 57.150 47.619 0.00 0.00 46.27 3.79
15 16 4.801330 ATTGACAGTGTATCTGACCGAA 57.199 40.909 0.00 0.00 46.27 4.30
16 17 4.201881 CGTATTGACAGTGTATCTGACCGA 60.202 45.833 0.00 0.00 46.27 4.69
17 18 4.035684 CGTATTGACAGTGTATCTGACCG 58.964 47.826 0.00 0.00 46.27 4.79
18 19 4.995124 ACGTATTGACAGTGTATCTGACC 58.005 43.478 0.00 0.00 46.27 4.02
19 20 8.630278 AAATACGTATTGACAGTGTATCTGAC 57.370 34.615 21.00 0.00 46.27 3.51
42 43 9.697250 CACAAAAAGATCTAAATCGCGTATAAA 57.303 29.630 5.77 0.00 36.97 1.40
43 44 9.089601 TCACAAAAAGATCTAAATCGCGTATAA 57.910 29.630 5.77 0.00 36.97 0.98
44 45 8.537223 GTCACAAAAAGATCTAAATCGCGTATA 58.463 33.333 5.77 0.00 36.97 1.47
45 46 7.399523 GTCACAAAAAGATCTAAATCGCGTAT 58.600 34.615 5.77 0.00 36.97 3.06
46 47 6.183360 GGTCACAAAAAGATCTAAATCGCGTA 60.183 38.462 5.77 0.00 36.97 4.42
47 48 5.390567 GGTCACAAAAAGATCTAAATCGCGT 60.391 40.000 5.77 0.00 36.97 6.01
48 49 5.022021 GGTCACAAAAAGATCTAAATCGCG 58.978 41.667 0.00 0.00 36.97 5.87
49 50 5.795441 GTGGTCACAAAAAGATCTAAATCGC 59.205 40.000 0.00 0.00 36.97 4.58
50 51 7.133891 AGTGGTCACAAAAAGATCTAAATCG 57.866 36.000 0.00 0.00 36.97 3.34
51 52 7.237173 CGAGTGGTCACAAAAAGATCTAAATC 58.763 38.462 0.00 0.00 0.00 2.17
52 53 6.348540 GCGAGTGGTCACAAAAAGATCTAAAT 60.349 38.462 0.00 0.00 0.00 1.40
53 54 5.049680 GCGAGTGGTCACAAAAAGATCTAAA 60.050 40.000 0.00 0.00 0.00 1.85
54 55 4.451096 GCGAGTGGTCACAAAAAGATCTAA 59.549 41.667 0.00 0.00 0.00 2.10
55 56 3.994392 GCGAGTGGTCACAAAAAGATCTA 59.006 43.478 0.00 0.00 0.00 1.98
56 57 2.808543 GCGAGTGGTCACAAAAAGATCT 59.191 45.455 3.82 0.00 0.00 2.75
57 58 2.095718 GGCGAGTGGTCACAAAAAGATC 60.096 50.000 3.82 0.00 0.00 2.75
58 59 1.880027 GGCGAGTGGTCACAAAAAGAT 59.120 47.619 3.82 0.00 0.00 2.40
59 60 1.305201 GGCGAGTGGTCACAAAAAGA 58.695 50.000 3.82 0.00 0.00 2.52
60 61 0.310854 GGGCGAGTGGTCACAAAAAG 59.689 55.000 3.82 0.00 0.00 2.27
61 62 1.104577 GGGGCGAGTGGTCACAAAAA 61.105 55.000 3.82 0.00 0.00 1.94
62 63 1.527380 GGGGCGAGTGGTCACAAAA 60.527 57.895 3.82 0.00 0.00 2.44
63 64 2.112297 GGGGCGAGTGGTCACAAA 59.888 61.111 3.82 0.00 0.00 2.83
64 65 2.272230 TTTGGGGCGAGTGGTCACAA 62.272 55.000 3.82 0.00 43.22 3.33
65 66 2.747443 TTTGGGGCGAGTGGTCACA 61.747 57.895 3.82 0.00 0.00 3.58
66 67 2.112297 TTTGGGGCGAGTGGTCAC 59.888 61.111 0.00 0.00 0.00 3.67
67 68 1.990160 AAGTTTGGGGCGAGTGGTCA 61.990 55.000 0.00 0.00 0.00 4.02
68 69 1.228154 AAGTTTGGGGCGAGTGGTC 60.228 57.895 0.00 0.00 0.00 4.02
69 70 1.528309 CAAGTTTGGGGCGAGTGGT 60.528 57.895 0.00 0.00 0.00 4.16
70 71 0.609131 ATCAAGTTTGGGGCGAGTGG 60.609 55.000 0.00 0.00 0.00 4.00
71 72 1.737793 GTATCAAGTTTGGGGCGAGTG 59.262 52.381 0.00 0.00 0.00 3.51
72 73 1.628846 AGTATCAAGTTTGGGGCGAGT 59.371 47.619 0.00 0.00 0.00 4.18
73 74 2.009774 CAGTATCAAGTTTGGGGCGAG 58.990 52.381 0.00 0.00 0.00 5.03
74 75 1.626321 TCAGTATCAAGTTTGGGGCGA 59.374 47.619 0.00 0.00 0.00 5.54
75 76 1.737793 GTCAGTATCAAGTTTGGGGCG 59.262 52.381 0.00 0.00 0.00 6.13
76 77 2.488153 GTGTCAGTATCAAGTTTGGGGC 59.512 50.000 0.00 0.00 0.00 5.80
77 78 2.742053 CGTGTCAGTATCAAGTTTGGGG 59.258 50.000 0.00 0.00 0.00 4.96
78 79 3.399330 ACGTGTCAGTATCAAGTTTGGG 58.601 45.455 0.00 0.00 0.00 4.12
79 80 6.533819 TTTACGTGTCAGTATCAAGTTTGG 57.466 37.500 0.00 0.00 0.00 3.28
80 81 9.445786 AATTTTTACGTGTCAGTATCAAGTTTG 57.554 29.630 0.00 0.00 0.00 2.93
83 84 8.430063 CGTAATTTTTACGTGTCAGTATCAAGT 58.570 33.333 10.74 0.00 36.31 3.16
84 85 8.641155 TCGTAATTTTTACGTGTCAGTATCAAG 58.359 33.333 16.60 0.00 41.25 3.02
85 86 8.518151 TCGTAATTTTTACGTGTCAGTATCAA 57.482 30.769 16.60 0.00 41.25 2.57
86 87 8.427012 GTTCGTAATTTTTACGTGTCAGTATCA 58.573 33.333 16.60 0.00 41.25 2.15
87 88 8.427012 TGTTCGTAATTTTTACGTGTCAGTATC 58.573 33.333 16.60 0.43 41.25 2.24
88 89 8.296799 TGTTCGTAATTTTTACGTGTCAGTAT 57.703 30.769 16.60 0.00 41.25 2.12
89 90 7.434897 ACTGTTCGTAATTTTTACGTGTCAGTA 59.565 33.333 25.00 7.63 40.63 2.74
90 91 6.256321 ACTGTTCGTAATTTTTACGTGTCAGT 59.744 34.615 23.15 23.15 41.25 3.41
91 92 6.568601 CACTGTTCGTAATTTTTACGTGTCAG 59.431 38.462 22.44 22.44 41.25 3.51
92 93 6.412460 CACTGTTCGTAATTTTTACGTGTCA 58.588 36.000 16.60 13.16 41.25 3.58
93 94 5.842327 CCACTGTTCGTAATTTTTACGTGTC 59.158 40.000 16.60 10.31 41.25 3.67
94 95 5.294060 ACCACTGTTCGTAATTTTTACGTGT 59.706 36.000 16.60 10.31 41.25 4.49
95 96 5.740406 ACCACTGTTCGTAATTTTTACGTG 58.260 37.500 16.60 9.09 41.25 4.49
96 97 5.989551 ACCACTGTTCGTAATTTTTACGT 57.010 34.783 16.60 0.00 41.25 3.57
97 98 6.073873 TGGTACCACTGTTCGTAATTTTTACG 60.074 38.462 11.60 12.33 41.79 3.18
98 99 7.188468 TGGTACCACTGTTCGTAATTTTTAC 57.812 36.000 11.60 0.00 0.00 2.01
99 100 7.798596 TTGGTACCACTGTTCGTAATTTTTA 57.201 32.000 16.04 0.00 0.00 1.52
100 101 6.696441 TTGGTACCACTGTTCGTAATTTTT 57.304 33.333 16.04 0.00 0.00 1.94
101 102 6.713450 AGATTGGTACCACTGTTCGTAATTTT 59.287 34.615 16.04 0.00 0.00 1.82
102 103 6.148811 CAGATTGGTACCACTGTTCGTAATTT 59.851 38.462 16.04 0.00 0.00 1.82
103 104 5.642063 CAGATTGGTACCACTGTTCGTAATT 59.358 40.000 16.04 0.00 0.00 1.40
104 105 5.175859 CAGATTGGTACCACTGTTCGTAAT 58.824 41.667 16.04 1.24 0.00 1.89
105 106 4.562082 CAGATTGGTACCACTGTTCGTAA 58.438 43.478 16.04 0.00 0.00 3.18
106 107 3.615592 GCAGATTGGTACCACTGTTCGTA 60.616 47.826 25.43 7.59 33.57 3.43
107 108 2.870435 GCAGATTGGTACCACTGTTCGT 60.870 50.000 25.43 5.10 33.57 3.85
108 109 1.732259 GCAGATTGGTACCACTGTTCG 59.268 52.381 25.43 11.14 33.57 3.95
109 110 2.778299 TGCAGATTGGTACCACTGTTC 58.222 47.619 25.43 16.03 33.57 3.18
110 111 2.949177 TGCAGATTGGTACCACTGTT 57.051 45.000 25.43 9.31 33.57 3.16
111 112 2.040278 ACATGCAGATTGGTACCACTGT 59.960 45.455 25.43 13.89 33.57 3.55
112 113 2.715046 ACATGCAGATTGGTACCACTG 58.285 47.619 22.40 22.40 0.00 3.66
113 114 4.568072 TTACATGCAGATTGGTACCACT 57.432 40.909 16.04 9.86 0.00 4.00
114 115 5.173774 CATTACATGCAGATTGGTACCAC 57.826 43.478 16.04 3.90 0.00 4.16
128 129 4.724074 ACCACAATTGAGGCATTACATG 57.276 40.909 20.41 0.50 0.00 3.21
129 130 7.342799 AGAAATACCACAATTGAGGCATTACAT 59.657 33.333 20.41 6.12 0.00 2.29
130 131 6.663093 AGAAATACCACAATTGAGGCATTACA 59.337 34.615 20.41 1.49 0.00 2.41
131 132 6.974622 CAGAAATACCACAATTGAGGCATTAC 59.025 38.462 20.41 10.36 0.00 1.89
132 133 6.663093 ACAGAAATACCACAATTGAGGCATTA 59.337 34.615 20.41 7.40 0.00 1.90
133 134 5.481473 ACAGAAATACCACAATTGAGGCATT 59.519 36.000 20.41 16.49 0.00 3.56
134 135 5.018809 ACAGAAATACCACAATTGAGGCAT 58.981 37.500 20.41 11.46 0.00 4.40
135 136 4.406456 ACAGAAATACCACAATTGAGGCA 58.594 39.130 20.41 9.51 0.00 4.75
136 137 5.414454 TGTACAGAAATACCACAATTGAGGC 59.586 40.000 20.41 5.26 0.00 4.70
137 138 7.447374 TTGTACAGAAATACCACAATTGAGG 57.553 36.000 19.10 19.10 0.00 3.86
143 144 8.714179 CGAGTTAATTGTACAGAAATACCACAA 58.286 33.333 0.00 0.00 33.96 3.33
144 145 8.089597 TCGAGTTAATTGTACAGAAATACCACA 58.910 33.333 0.00 0.00 0.00 4.17
145 146 8.378421 GTCGAGTTAATTGTACAGAAATACCAC 58.622 37.037 0.00 0.00 0.00 4.16
146 147 7.274033 CGTCGAGTTAATTGTACAGAAATACCA 59.726 37.037 0.00 0.00 0.00 3.25
147 148 7.485913 TCGTCGAGTTAATTGTACAGAAATACC 59.514 37.037 0.00 0.00 0.00 2.73
148 149 8.385789 TCGTCGAGTTAATTGTACAGAAATAC 57.614 34.615 0.00 0.00 0.00 1.89
149 150 8.969121 TTCGTCGAGTTAATTGTACAGAAATA 57.031 30.769 0.00 0.00 0.00 1.40
150 151 7.878477 TTCGTCGAGTTAATTGTACAGAAAT 57.122 32.000 0.00 0.00 0.00 2.17
151 152 7.436080 ACTTTCGTCGAGTTAATTGTACAGAAA 59.564 33.333 0.00 0.00 0.00 2.52
152 153 6.919662 ACTTTCGTCGAGTTAATTGTACAGAA 59.080 34.615 0.00 0.00 0.00 3.02
153 154 6.361481 CACTTTCGTCGAGTTAATTGTACAGA 59.639 38.462 0.00 0.00 0.00 3.41
154 155 6.399669 CCACTTTCGTCGAGTTAATTGTACAG 60.400 42.308 0.00 0.00 0.00 2.74
155 156 5.403166 CCACTTTCGTCGAGTTAATTGTACA 59.597 40.000 0.00 0.00 0.00 2.90
156 157 5.630680 TCCACTTTCGTCGAGTTAATTGTAC 59.369 40.000 0.00 0.00 0.00 2.90
157 158 5.630680 GTCCACTTTCGTCGAGTTAATTGTA 59.369 40.000 0.00 0.00 0.00 2.41
158 159 4.446719 GTCCACTTTCGTCGAGTTAATTGT 59.553 41.667 0.00 0.00 0.00 2.71
159 160 4.446385 TGTCCACTTTCGTCGAGTTAATTG 59.554 41.667 0.00 0.00 0.00 2.32
160 161 4.624015 TGTCCACTTTCGTCGAGTTAATT 58.376 39.130 0.00 0.00 0.00 1.40
161 162 4.247267 TGTCCACTTTCGTCGAGTTAAT 57.753 40.909 0.00 0.00 0.00 1.40
162 163 3.713858 TGTCCACTTTCGTCGAGTTAA 57.286 42.857 0.00 0.00 0.00 2.01
163 164 3.571571 CATGTCCACTTTCGTCGAGTTA 58.428 45.455 0.00 0.00 0.00 2.24
164 165 2.404215 CATGTCCACTTTCGTCGAGTT 58.596 47.619 0.00 0.00 0.00 3.01
165 166 1.935300 GCATGTCCACTTTCGTCGAGT 60.935 52.381 0.00 0.00 0.00 4.18
166 167 0.716108 GCATGTCCACTTTCGTCGAG 59.284 55.000 0.00 0.00 0.00 4.04
167 168 0.032815 TGCATGTCCACTTTCGTCGA 59.967 50.000 0.00 0.00 0.00 4.20
168 169 1.078709 ATGCATGTCCACTTTCGTCG 58.921 50.000 0.00 0.00 0.00 5.12
169 170 1.131126 CCATGCATGTCCACTTTCGTC 59.869 52.381 24.58 0.00 0.00 4.20
170 171 1.167851 CCATGCATGTCCACTTTCGT 58.832 50.000 24.58 0.00 0.00 3.85
171 172 0.179156 GCCATGCATGTCCACTTTCG 60.179 55.000 24.58 7.60 0.00 3.46
172 173 0.889994 TGCCATGCATGTCCACTTTC 59.110 50.000 24.58 4.64 31.71 2.62
173 174 0.892755 CTGCCATGCATGTCCACTTT 59.107 50.000 24.58 0.00 38.13 2.66
174 175 1.601419 GCTGCCATGCATGTCCACTT 61.601 55.000 24.58 0.00 38.13 3.16
175 176 2.050350 GCTGCCATGCATGTCCACT 61.050 57.895 24.58 0.00 38.13 4.00
176 177 1.879737 TTGCTGCCATGCATGTCCAC 61.880 55.000 24.58 12.14 42.96 4.02
177 178 0.973496 ATTGCTGCCATGCATGTCCA 60.973 50.000 24.58 18.83 42.96 4.02
178 179 0.249322 GATTGCTGCCATGCATGTCC 60.249 55.000 24.58 15.43 42.96 4.02
179 180 0.458260 TGATTGCTGCCATGCATGTC 59.542 50.000 24.58 13.73 42.96 3.06
180 181 0.174845 GTGATTGCTGCCATGCATGT 59.825 50.000 24.58 4.62 42.96 3.21
181 182 0.529773 GGTGATTGCTGCCATGCATG 60.530 55.000 20.19 20.19 42.96 4.06
182 183 1.820581 GGTGATTGCTGCCATGCAT 59.179 52.632 0.00 0.00 42.96 3.96
183 184 2.702788 CGGTGATTGCTGCCATGCA 61.703 57.895 0.00 0.00 41.65 3.96
184 185 2.103538 CGGTGATTGCTGCCATGC 59.896 61.111 0.00 0.00 0.00 4.06
185 186 1.105167 ATCCGGTGATTGCTGCCATG 61.105 55.000 0.00 0.00 0.00 3.66
186 187 1.105167 CATCCGGTGATTGCTGCCAT 61.105 55.000 0.00 0.00 0.00 4.40
187 188 1.750018 CATCCGGTGATTGCTGCCA 60.750 57.895 0.00 0.00 0.00 4.92
188 189 1.750399 ACATCCGGTGATTGCTGCC 60.750 57.895 0.00 0.00 0.00 4.85
189 190 3.909662 ACATCCGGTGATTGCTGC 58.090 55.556 0.00 0.00 0.00 5.25
205 206 1.129437 GACTGCGAAGAAAGATGGCAC 59.871 52.381 0.00 0.00 0.00 5.01
206 207 1.442769 GACTGCGAAGAAAGATGGCA 58.557 50.000 0.00 0.00 0.00 4.92
207 208 0.371645 CGACTGCGAAGAAAGATGGC 59.628 55.000 0.00 0.00 40.82 4.40
208 209 1.391485 CACGACTGCGAAGAAAGATGG 59.609 52.381 0.00 0.00 41.64 3.51
209 210 1.391485 CCACGACTGCGAAGAAAGATG 59.609 52.381 0.00 0.00 41.64 2.90
210 211 1.714794 CCACGACTGCGAAGAAAGAT 58.285 50.000 0.00 0.00 41.64 2.40
211 212 0.944311 GCCACGACTGCGAAGAAAGA 60.944 55.000 0.00 0.00 41.64 2.52
212 213 1.493311 GCCACGACTGCGAAGAAAG 59.507 57.895 0.00 0.00 41.64 2.62
213 214 3.637714 GCCACGACTGCGAAGAAA 58.362 55.556 0.00 0.00 41.64 2.52
238 239 1.671379 GAAGCCAGTCGGAACACCC 60.671 63.158 0.00 0.00 0.00 4.61
239 240 0.670854 GAGAAGCCAGTCGGAACACC 60.671 60.000 0.00 0.00 0.00 4.16
240 241 1.009389 CGAGAAGCCAGTCGGAACAC 61.009 60.000 0.00 0.00 32.40 3.32
241 242 1.289066 CGAGAAGCCAGTCGGAACA 59.711 57.895 0.00 0.00 32.40 3.18
242 243 1.009389 CACGAGAAGCCAGTCGGAAC 61.009 60.000 0.00 0.00 40.59 3.62
243 244 1.176619 TCACGAGAAGCCAGTCGGAA 61.177 55.000 0.00 0.00 40.59 4.30
244 245 0.965866 ATCACGAGAAGCCAGTCGGA 60.966 55.000 0.00 0.21 40.59 4.55
245 246 0.526524 GATCACGAGAAGCCAGTCGG 60.527 60.000 0.00 0.00 40.59 4.79
246 247 0.863538 CGATCACGAGAAGCCAGTCG 60.864 60.000 0.00 0.00 42.66 4.18
247 248 1.142778 GCGATCACGAGAAGCCAGTC 61.143 60.000 0.00 0.00 42.66 3.51
248 249 1.153745 GCGATCACGAGAAGCCAGT 60.154 57.895 0.00 0.00 42.66 4.00
249 250 1.144565 CTGCGATCACGAGAAGCCAG 61.145 60.000 10.14 2.97 42.66 4.85
250 251 1.153765 CTGCGATCACGAGAAGCCA 60.154 57.895 10.14 0.00 42.66 4.75
251 252 1.880340 CCTGCGATCACGAGAAGCC 60.880 63.158 10.14 0.00 42.66 4.35
252 253 2.520904 GCCTGCGATCACGAGAAGC 61.521 63.158 6.71 6.71 42.66 3.86
253 254 0.459237 AAGCCTGCGATCACGAGAAG 60.459 55.000 0.00 0.00 42.66 2.85
254 255 0.458543 GAAGCCTGCGATCACGAGAA 60.459 55.000 0.00 0.00 42.66 2.87
255 256 1.139734 GAAGCCTGCGATCACGAGA 59.860 57.895 0.00 0.00 42.66 4.04
256 257 0.737367 TTGAAGCCTGCGATCACGAG 60.737 55.000 0.00 0.00 42.66 4.18
257 258 0.108186 ATTGAAGCCTGCGATCACGA 60.108 50.000 0.00 0.00 42.66 4.35
258 259 0.027194 CATTGAAGCCTGCGATCACG 59.973 55.000 0.00 0.00 42.93 4.35
259 260 0.248377 GCATTGAAGCCTGCGATCAC 60.248 55.000 0.00 0.00 0.00 3.06
260 261 2.100846 GCATTGAAGCCTGCGATCA 58.899 52.632 0.00 0.00 0.00 2.92
265 266 1.515736 GAAGCGCATTGAAGCCTGC 60.516 57.895 11.47 0.00 35.02 4.85
266 267 0.454600 ATGAAGCGCATTGAAGCCTG 59.545 50.000 11.47 0.00 31.73 4.85
267 268 0.737219 GATGAAGCGCATTGAAGCCT 59.263 50.000 11.47 0.00 37.34 4.58
268 269 0.452987 TGATGAAGCGCATTGAAGCC 59.547 50.000 11.47 0.00 37.34 4.35
269 270 2.486951 ATGATGAAGCGCATTGAAGC 57.513 45.000 11.47 0.00 37.34 3.86
270 271 3.550275 CCAAATGATGAAGCGCATTGAAG 59.450 43.478 11.47 0.00 37.34 3.02
271 272 3.513662 CCAAATGATGAAGCGCATTGAA 58.486 40.909 11.47 0.00 37.34 2.69
272 273 2.159212 CCCAAATGATGAAGCGCATTGA 60.159 45.455 11.47 0.00 37.34 2.57
273 274 2.159212 TCCCAAATGATGAAGCGCATTG 60.159 45.455 11.47 1.44 37.34 2.82
274 275 2.101783 TCCCAAATGATGAAGCGCATT 58.898 42.857 11.47 0.00 37.34 3.56
275 276 1.766494 TCCCAAATGATGAAGCGCAT 58.234 45.000 11.47 0.00 40.77 4.73
276 277 1.473677 CTTCCCAAATGATGAAGCGCA 59.526 47.619 11.47 0.00 30.19 6.09
277 278 1.745087 TCTTCCCAAATGATGAAGCGC 59.255 47.619 0.00 0.00 36.34 5.92
278 279 4.439305 TTTCTTCCCAAATGATGAAGCG 57.561 40.909 0.00 0.00 36.34 4.68
279 280 5.640783 CCTTTTTCTTCCCAAATGATGAAGC 59.359 40.000 0.00 0.00 36.34 3.86
280 281 5.640783 GCCTTTTTCTTCCCAAATGATGAAG 59.359 40.000 0.00 0.00 37.44 3.02
281 282 5.512921 GGCCTTTTTCTTCCCAAATGATGAA 60.513 40.000 0.00 0.00 0.00 2.57
282 283 4.020307 GGCCTTTTTCTTCCCAAATGATGA 60.020 41.667 0.00 0.00 0.00 2.92
283 284 4.256110 GGCCTTTTTCTTCCCAAATGATG 58.744 43.478 0.00 0.00 0.00 3.07
284 285 3.264193 GGGCCTTTTTCTTCCCAAATGAT 59.736 43.478 0.84 0.00 38.62 2.45
285 286 2.637382 GGGCCTTTTTCTTCCCAAATGA 59.363 45.455 0.84 0.00 38.62 2.57
286 287 2.290260 GGGGCCTTTTTCTTCCCAAATG 60.290 50.000 0.84 0.00 40.53 2.32
287 288 1.985159 GGGGCCTTTTTCTTCCCAAAT 59.015 47.619 0.84 0.00 40.53 2.32
288 289 1.061735 AGGGGCCTTTTTCTTCCCAAA 60.062 47.619 0.84 0.00 40.53 3.28
289 290 0.565674 AGGGGCCTTTTTCTTCCCAA 59.434 50.000 0.84 0.00 40.53 4.12
290 291 1.462426 TAGGGGCCTTTTTCTTCCCA 58.538 50.000 0.84 0.00 40.53 4.37
291 292 2.848678 ATAGGGGCCTTTTTCTTCCC 57.151 50.000 0.84 0.00 38.03 3.97
292 293 6.614694 TTTTTATAGGGGCCTTTTTCTTCC 57.385 37.500 0.84 0.00 0.00 3.46
332 333 6.797513 GCAATTTTGTTGTGGTAAACGTTTTT 59.202 30.769 20.19 0.00 32.47 1.94
333 334 6.073222 TGCAATTTTGTTGTGGTAAACGTTTT 60.073 30.769 20.19 3.53 32.47 2.43
334 335 5.408604 TGCAATTTTGTTGTGGTAAACGTTT 59.591 32.000 18.90 18.90 32.47 3.60
335 336 4.929808 TGCAATTTTGTTGTGGTAAACGTT 59.070 33.333 0.00 0.00 32.47 3.99
336 337 4.495422 TGCAATTTTGTTGTGGTAAACGT 58.505 34.783 0.00 0.00 32.47 3.99
337 338 5.251832 GTTGCAATTTTGTTGTGGTAAACG 58.748 37.500 0.59 0.00 32.47 3.60
398 399 2.801996 CGCGTACGCAACTCGGAA 60.802 61.111 36.44 0.00 43.86 4.30
519 521 3.771160 GGAGGTGCGTGTCGGGAT 61.771 66.667 0.00 0.00 0.00 3.85
667 670 2.200170 GACAAAGAGGCGCGGCATTT 62.200 55.000 34.94 28.56 0.00 2.32
826 845 1.298859 GGTTTACGAGGCTGTGCAGG 61.299 60.000 0.00 0.00 0.00 4.85
914 933 1.483424 GAGCGCTAGTCCGTGAATGC 61.483 60.000 11.50 0.00 0.00 3.56
932 951 1.251527 GGAACTGGTGAGAGGAGCGA 61.252 60.000 0.00 0.00 0.00 4.93
938 957 1.201181 CGTCTCTGGAACTGGTGAGAG 59.799 57.143 0.00 0.00 36.41 3.20
958 977 1.346538 GCAATGCTCTCTCGCGTTC 59.653 57.895 5.77 0.00 37.03 3.95
970 989 2.178890 CGCTCCTCAGAGGCAATGC 61.179 63.158 12.26 11.65 40.79 3.56
1331 1353 2.296692 CTTTGCGTGCGGAATCGGAG 62.297 60.000 0.00 0.00 37.41 4.63
1342 1364 2.763249 AGAAGCTGAAACTTTGCGTG 57.237 45.000 0.00 0.00 0.00 5.34
1343 1365 2.682856 TGAAGAAGCTGAAACTTTGCGT 59.317 40.909 0.00 0.00 0.00 5.24
1344 1366 3.294943 CTGAAGAAGCTGAAACTTTGCG 58.705 45.455 0.00 0.00 0.00 4.85
1374 1396 1.798813 CTGCACGAGTACCCAAAAGAC 59.201 52.381 0.00 0.00 0.00 3.01
1385 1407 3.699894 CTCCTGGCCTGCACGAGT 61.700 66.667 3.32 0.00 0.00 4.18
1632 1654 9.927668 CAACATAATTAATCCTTGAACCAAAGT 57.072 29.630 0.00 0.00 0.00 2.66
1633 1655 8.872845 GCAACATAATTAATCCTTGAACCAAAG 58.127 33.333 0.00 0.00 0.00 2.77
1634 1656 8.370940 TGCAACATAATTAATCCTTGAACCAAA 58.629 29.630 0.00 0.00 0.00 3.28
1659 1681 4.727734 GCAATGCAACGAAGTAGTGGTATG 60.728 45.833 0.00 0.00 45.00 2.39
1668 1690 4.906065 ATATCATGCAATGCAACGAAGT 57.094 36.364 13.45 0.84 45.86 3.01
1703 1732 0.316204 GCACAAAGCAGACCAAGCAT 59.684 50.000 0.00 0.00 44.79 3.79
1718 1747 9.710900 CTGATAGTATGGTAATCTATTTGCACA 57.289 33.333 0.00 0.00 0.00 4.57
1893 1922 5.046304 AGGGAGATAAATGTCCATATGGTCG 60.046 44.000 21.28 0.00 41.73 4.79
2001 2030 1.412343 GGAAGGCACACCAAACAATGT 59.588 47.619 0.00 0.00 39.06 2.71
2034 2063 6.369615 ACAACTTTCAAAGATGCATTATTGGC 59.630 34.615 19.31 0.05 34.95 4.52
2070 2099 0.393820 ACACAAATTGGCAAGCCTGG 59.606 50.000 12.96 0.00 36.94 4.45
2081 2110 8.349983 GGACTATACACTGAAACAACACAAATT 58.650 33.333 0.00 0.00 0.00 1.82
2083 2112 7.051623 AGGACTATACACTGAAACAACACAAA 58.948 34.615 0.00 0.00 0.00 2.83
2122 2175 7.201591 GCAGCAGCATCGTATGATTATTAAGAT 60.202 37.037 0.00 0.00 41.58 2.40
2123 2176 6.091305 GCAGCAGCATCGTATGATTATTAAGA 59.909 38.462 0.00 0.00 41.58 2.10
2200 2253 1.948834 TGTCTGCAATGTGAACAGTGG 59.051 47.619 12.29 0.00 41.70 4.00
2401 2454 7.759433 TCAAACAGGATGAAGAACTTGTTTTTC 59.241 33.333 9.06 9.06 39.69 2.29
2500 2553 5.102953 TCCTGTTAGTCCCATGATTCTTG 57.897 43.478 0.00 0.00 0.00 3.02
2632 2685 2.672714 CTGACCTCGTTCATTTCGTCA 58.327 47.619 0.00 0.00 0.00 4.35
2809 2862 2.679349 GCCACAGTCAGATCTCCTTTCC 60.679 54.545 0.00 0.00 0.00 3.13
2929 2982 5.122239 GCTGTAATTGTGTGTATCAGCAGAA 59.878 40.000 8.95 0.00 43.83 3.02
2938 2991 2.290641 CCCCCTGCTGTAATTGTGTGTA 60.291 50.000 0.00 0.00 0.00 2.90
3040 3093 0.895530 TTCTAGTGCCTCGACCCTTG 59.104 55.000 0.00 0.00 0.00 3.61
3147 3203 7.153985 ACAAAATACGTACAGGTTAGCACTAA 58.846 34.615 0.00 0.00 0.00 2.24
3158 3214 6.519761 GCATTGAACTGACAAAATACGTACAG 59.480 38.462 0.00 2.01 33.44 2.74
3283 3339 3.146066 CCAGCCTAACTGCAGTTAAACA 58.854 45.455 32.86 18.00 45.78 2.83
3391 3463 5.717178 AGGAGCAGATGACTAGTACTCAAAA 59.283 40.000 0.00 0.00 0.00 2.44
3396 3468 3.383185 GCAAGGAGCAGATGACTAGTACT 59.617 47.826 0.00 0.00 44.79 2.73
3397 3469 3.712187 GCAAGGAGCAGATGACTAGTAC 58.288 50.000 0.00 0.00 44.79 2.73
3466 3538 6.867799 TGTATACAATTCAAAATTGCTGCG 57.132 33.333 2.20 0.00 32.55 5.18
3486 3558 8.768501 ATCTCAGTACTAATGAGGTCAATGTA 57.231 34.615 12.45 0.00 43.60 2.29
3487 3559 7.667575 ATCTCAGTACTAATGAGGTCAATGT 57.332 36.000 12.45 0.00 43.60 2.71
3488 3560 8.824781 CAAATCTCAGTACTAATGAGGTCAATG 58.175 37.037 12.45 4.08 43.60 2.82
3489 3561 8.543774 ACAAATCTCAGTACTAATGAGGTCAAT 58.456 33.333 12.45 0.00 43.60 2.57
3490 3562 7.907389 ACAAATCTCAGTACTAATGAGGTCAA 58.093 34.615 12.45 0.00 43.60 3.18
3491 3563 7.397476 AGACAAATCTCAGTACTAATGAGGTCA 59.603 37.037 12.45 0.00 43.60 4.02
3492 3564 7.704472 CAGACAAATCTCAGTACTAATGAGGTC 59.296 40.741 12.45 11.25 43.60 3.85
3493 3565 7.551585 CAGACAAATCTCAGTACTAATGAGGT 58.448 38.462 12.45 3.80 43.60 3.85
3494 3566 6.478344 GCAGACAAATCTCAGTACTAATGAGG 59.522 42.308 12.45 1.12 43.60 3.86
3495 3567 7.009999 GTGCAGACAAATCTCAGTACTAATGAG 59.990 40.741 7.12 7.12 44.57 2.90
3496 3568 6.813649 GTGCAGACAAATCTCAGTACTAATGA 59.186 38.462 0.00 0.00 30.42 2.57
3497 3569 6.036517 GGTGCAGACAAATCTCAGTACTAATG 59.963 42.308 0.00 0.00 30.42 1.90
3498 3570 6.109359 GGTGCAGACAAATCTCAGTACTAAT 58.891 40.000 0.00 0.00 30.42 1.73
3499 3571 5.011635 TGGTGCAGACAAATCTCAGTACTAA 59.988 40.000 0.00 0.00 30.42 2.24
3500 3572 4.526650 TGGTGCAGACAAATCTCAGTACTA 59.473 41.667 0.00 0.00 30.42 1.82
3501 3573 3.324846 TGGTGCAGACAAATCTCAGTACT 59.675 43.478 0.00 0.00 30.42 2.73
3502 3574 3.664107 TGGTGCAGACAAATCTCAGTAC 58.336 45.455 0.00 0.00 30.42 2.73
3524 3613 3.572682 ACGTCGGGCATAGAATTGAGATA 59.427 43.478 0.00 0.00 0.00 1.98
3533 3622 0.101759 GCAAGTACGTCGGGCATAGA 59.898 55.000 0.00 0.00 0.00 1.98
3537 3626 3.617735 TGGCAAGTACGTCGGGCA 61.618 61.111 0.00 0.00 0.00 5.36
3553 3642 5.869753 AGAGTTCCAATCAAGAATTCGTG 57.130 39.130 14.41 14.41 35.71 4.35
3633 3722 6.223120 ACAAGGTTGAAACTCAATATTTGCC 58.777 36.000 0.00 0.00 38.79 4.52
3694 3808 4.929819 TGGTTCTCTTTTAAAGGCCAAC 57.070 40.909 5.01 5.57 0.00 3.77
3798 4561 5.188555 TCATAAGACTGCAAATCACCTCTCT 59.811 40.000 0.79 0.00 0.00 3.10
3869 4632 1.000866 AATTCCTGCCCTTGCCTCC 59.999 57.895 0.00 0.00 36.33 4.30
3892 4655 3.495753 CGGCCGGTTATACTCAATTAACC 59.504 47.826 20.10 2.46 38.76 2.85
3921 4684 9.620660 TTTTCTTGTCTTCAGTTTTTGTACTTC 57.379 29.630 0.00 0.00 0.00 3.01
3963 4727 7.123547 TGTCTAAACACTTCCCTGAAAATTGTT 59.876 33.333 0.00 0.00 0.00 2.83
3964 4728 6.605594 TGTCTAAACACTTCCCTGAAAATTGT 59.394 34.615 0.00 0.00 0.00 2.71
3967 4731 6.149474 CGATGTCTAAACACTTCCCTGAAAAT 59.851 38.462 0.00 0.00 38.48 1.82
3973 4737 3.833070 AGACGATGTCTAAACACTTCCCT 59.167 43.478 0.00 0.00 41.51 4.20
3993 4785 1.003464 TGCTCTTGTGCATGGCTTAGA 59.997 47.619 0.00 0.00 38.12 2.10
3996 4788 1.530013 GGTGCTCTTGTGCATGGCTT 61.530 55.000 0.00 0.00 45.23 4.35
4003 4795 3.426568 GCCTCGGTGCTCTTGTGC 61.427 66.667 0.00 0.00 0.00 4.57
4040 4832 0.460459 TCGTCTTGGTTGCACACGAA 60.460 50.000 0.00 0.00 36.59 3.85
4063 4855 9.388506 TCTCATAGAGGATGAAATCTTTTCAAC 57.611 33.333 6.75 4.57 44.14 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.