Multiple sequence alignment - TraesCS3B01G280100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G280100 chr3B 100.000 3389 0 0 1 3389 449845384 449848772 0.000000e+00 6259.0
1 TraesCS3B01G280100 chr3D 94.032 2128 89 23 728 2849 351287001 351289096 0.000000e+00 3192.0
2 TraesCS3B01G280100 chr3D 90.698 301 26 2 3085 3383 7967481 7967181 1.890000e-107 399.0
3 TraesCS3B01G280100 chr3A 97.160 1655 38 2 863 2508 469668842 469670496 0.000000e+00 2787.0
4 TraesCS3B01G280100 chr3A 95.574 723 28 2 1 720 745553323 745554044 0.000000e+00 1155.0
5 TraesCS3B01G280100 chr3A 96.109 514 15 3 210 720 57911935 57912446 0.000000e+00 833.0
6 TraesCS3B01G280100 chr3A 96.185 367 14 0 1 367 57911572 57911938 4.840000e-168 601.0
7 TraesCS3B01G280100 chr3A 96.053 152 5 1 728 879 469668673 469668823 2.610000e-61 246.0
8 TraesCS3B01G280100 chr3A 76.970 165 18 9 2516 2672 135525649 135525497 3.630000e-10 76.8
9 TraesCS3B01G280100 chr5D 95.989 723 25 2 1 720 208538847 208538126 0.000000e+00 1171.0
10 TraesCS3B01G280100 chr5A 95.989 723 25 2 1 720 3455089 3454368 0.000000e+00 1171.0
11 TraesCS3B01G280100 chr5B 93.417 714 31 6 1 699 31288505 31289217 0.000000e+00 1044.0
12 TraesCS3B01G280100 chr5B 92.997 714 34 6 1 699 31195478 31196190 0.000000e+00 1027.0
13 TraesCS3B01G280100 chr5B 79.255 752 94 36 1 720 140948095 140947374 5.120000e-128 468.0
14 TraesCS3B01G280100 chr5B 84.314 153 20 4 2522 2672 673048332 673048482 2.730000e-31 147.0
15 TraesCS3B01G280100 chr4B 89.919 744 47 17 1 720 124042564 124043303 0.000000e+00 933.0
16 TraesCS3B01G280100 chr6A 79.283 753 92 38 1 720 21655645 21654924 5.120000e-128 468.0
17 TraesCS3B01G280100 chr6A 79.487 117 21 3 2556 2672 475445406 475445519 2.800000e-11 80.5
18 TraesCS3B01G280100 chr1B 78.333 660 82 34 1 630 310101611 310100983 1.490000e-98 370.0
19 TraesCS3B01G280100 chr7A 82.014 278 29 9 3082 3359 471546259 471546515 2.050000e-52 217.0
20 TraesCS3B01G280100 chr7A 79.856 278 50 3 3082 3359 493380316 493380587 7.420000e-47 198.0
21 TraesCS3B01G280100 chr7A 87.805 82 9 1 544 625 501146603 501146523 1.000000e-15 95.3
22 TraesCS3B01G280100 chr7A 84.524 84 12 1 2513 2595 657739663 657739746 7.790000e-12 82.4
23 TraesCS3B01G280100 chr6D 84.653 202 24 2 1 201 306006868 306007063 9.600000e-46 195.0
24 TraesCS3B01G280100 chr6D 82.069 145 20 5 2517 2659 419739586 419739446 5.940000e-23 119.0
25 TraesCS3B01G280100 chr6B 88.961 154 17 0 1 154 19716927 19716774 1.240000e-44 191.0
26 TraesCS3B01G280100 chr6B 82.609 138 22 2 3077 3213 588900359 588900223 1.650000e-23 121.0
27 TraesCS3B01G280100 chr6B 81.250 112 19 1 2544 2655 699140285 699140394 4.660000e-14 89.8
28 TraesCS3B01G280100 chr4D 93.913 115 6 1 2967 3081 378487228 378487341 4.500000e-39 172.0
29 TraesCS3B01G280100 chr2D 80.085 236 42 1 3082 3317 134401771 134402001 1.620000e-38 171.0
30 TraesCS3B01G280100 chr2D 77.593 241 35 11 3077 3317 59216641 59216420 9.870000e-26 128.0
31 TraesCS3B01G280100 chr1D 90.426 94 9 0 3087 3180 422328010 422327917 1.280000e-24 124.0
32 TraesCS3B01G280100 chr4A 77.419 186 36 6 3082 3264 479409176 479409358 4.620000e-19 106.0
33 TraesCS3B01G280100 chr4A 75.532 188 42 4 3085 3270 551779027 551778842 4.660000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G280100 chr3B 449845384 449848772 3388 False 6259.0 6259 100.0000 1 3389 1 chr3B.!!$F1 3388
1 TraesCS3B01G280100 chr3D 351287001 351289096 2095 False 3192.0 3192 94.0320 728 2849 1 chr3D.!!$F1 2121
2 TraesCS3B01G280100 chr3A 469668673 469670496 1823 False 1516.5 2787 96.6065 728 2508 2 chr3A.!!$F3 1780
3 TraesCS3B01G280100 chr3A 745553323 745554044 721 False 1155.0 1155 95.5740 1 720 1 chr3A.!!$F1 719
4 TraesCS3B01G280100 chr3A 57911572 57912446 874 False 717.0 833 96.1470 1 720 2 chr3A.!!$F2 719
5 TraesCS3B01G280100 chr5D 208538126 208538847 721 True 1171.0 1171 95.9890 1 720 1 chr5D.!!$R1 719
6 TraesCS3B01G280100 chr5A 3454368 3455089 721 True 1171.0 1171 95.9890 1 720 1 chr5A.!!$R1 719
7 TraesCS3B01G280100 chr5B 31288505 31289217 712 False 1044.0 1044 93.4170 1 699 1 chr5B.!!$F2 698
8 TraesCS3B01G280100 chr5B 31195478 31196190 712 False 1027.0 1027 92.9970 1 699 1 chr5B.!!$F1 698
9 TraesCS3B01G280100 chr5B 140947374 140948095 721 True 468.0 468 79.2550 1 720 1 chr5B.!!$R1 719
10 TraesCS3B01G280100 chr4B 124042564 124043303 739 False 933.0 933 89.9190 1 720 1 chr4B.!!$F1 719
11 TraesCS3B01G280100 chr6A 21654924 21655645 721 True 468.0 468 79.2830 1 720 1 chr6A.!!$R1 719
12 TraesCS3B01G280100 chr1B 310100983 310101611 628 True 370.0 370 78.3330 1 630 1 chr1B.!!$R1 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 970 0.307760 GCACATTACCGCATAGCCAC 59.692 55.0 0.00 0.0 0.0 5.01 F
1626 1914 0.037326 CCTTCTCCAAGTACAGCGCA 60.037 55.0 11.47 0.0 0.0 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1944 0.034896 CCTTGTACTTGGCGACCAGT 59.965 55.0 0.0 0.0 33.81 4.00 R
2947 3268 0.036577 AGAGGAGCTGTGCATGTGTC 60.037 55.0 0.0 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 201 1.705186 ACTGGCAGTACAAGGTCCAAT 59.295 47.619 20.61 0.00 0.00 3.16
191 235 2.811410 TGTCTAGGTTTCGGCTTCCTA 58.189 47.619 0.00 0.00 33.34 2.94
254 324 2.753452 GTGAGGTCTGTCTCGATGGTAA 59.247 50.000 0.00 0.00 36.61 2.85
354 582 3.449227 TCGACCCCAGCTACTGCG 61.449 66.667 0.00 0.00 45.42 5.18
371 599 5.722021 ACTGCGTGTACATATGATCCATA 57.278 39.130 10.38 0.00 0.00 2.74
426 654 2.483877 GCTTGTGTTGTGATGATCCGAA 59.516 45.455 0.00 0.00 0.00 4.30
491 721 7.222000 TGTTAAACCTTGACTTGAACAGTTT 57.778 32.000 0.00 0.00 35.01 2.66
534 765 6.878923 CAGTCATCCAACTATCCACTTGTAAA 59.121 38.462 0.00 0.00 0.00 2.01
535 766 7.554118 CAGTCATCCAACTATCCACTTGTAAAT 59.446 37.037 0.00 0.00 0.00 1.40
721 968 1.569493 CGCACATTACCGCATAGCC 59.431 57.895 0.00 0.00 0.00 3.93
722 969 1.157257 CGCACATTACCGCATAGCCA 61.157 55.000 0.00 0.00 0.00 4.75
723 970 0.307760 GCACATTACCGCATAGCCAC 59.692 55.000 0.00 0.00 0.00 5.01
724 971 1.953559 CACATTACCGCATAGCCACT 58.046 50.000 0.00 0.00 0.00 4.00
725 972 2.805295 GCACATTACCGCATAGCCACTA 60.805 50.000 0.00 0.00 0.00 2.74
726 973 3.059884 CACATTACCGCATAGCCACTAG 58.940 50.000 0.00 0.00 0.00 2.57
760 1007 4.871933 AATCTACCAAAACAAGCAAGGG 57.128 40.909 0.00 0.00 0.00 3.95
846 1093 0.897863 CAAATGTTCCCGGCCCTTCA 60.898 55.000 0.00 0.00 0.00 3.02
892 1174 1.447838 CGCGAACCCATACTGCACT 60.448 57.895 0.00 0.00 0.00 4.40
1395 1683 2.827190 TGGATCGGCTACGTCGCT 60.827 61.111 12.16 0.00 41.85 4.93
1482 1770 2.432628 CGCAACCTCGAGTGGGTC 60.433 66.667 12.31 0.00 35.83 4.46
1626 1914 0.037326 CCTTCTCCAAGTACAGCGCA 60.037 55.000 11.47 0.00 0.00 6.09
2375 2663 1.888512 GTTTCTCCCTGCATGCTTTCA 59.111 47.619 20.33 0.00 0.00 2.69
2469 2760 7.583230 TGTGAATAATGGCTTTTGAAATTTGC 58.417 30.769 0.00 0.00 0.00 3.68
2503 2794 5.126222 ACAAATGTTTATGTGTGGTGTGTCA 59.874 36.000 0.00 0.00 33.44 3.58
2510 2801 7.013750 TGTTTATGTGTGGTGTGTCATGTAATT 59.986 33.333 0.00 0.00 0.00 1.40
2518 2809 9.108284 TGTGGTGTGTCATGTAATTAATATCAG 57.892 33.333 0.00 0.00 0.00 2.90
2539 2830 8.690680 ATCAGTTTTGATAAGTCTTAGTCGAC 57.309 34.615 7.70 7.70 42.21 4.20
2541 2832 7.808381 TCAGTTTTGATAAGTCTTAGTCGACTG 59.192 37.037 28.12 12.46 43.14 3.51
2559 2850 5.180680 TCGACTGAGACTTCGTTATTTCTCA 59.819 40.000 0.00 0.00 41.71 3.27
2566 2857 6.102663 AGACTTCGTTATTTCTCAGTGGATG 58.897 40.000 0.00 0.00 0.00 3.51
2586 2877 7.446625 GTGGATGCTATATTCCTTTGATCTTGT 59.553 37.037 0.00 0.00 32.95 3.16
2590 2881 8.853077 TGCTATATTCCTTTGATCTTGTATGG 57.147 34.615 0.00 0.00 0.00 2.74
2596 2887 8.688747 ATTCCTTTGATCTTGTATGGAGATTC 57.311 34.615 0.00 0.00 34.13 2.52
2630 2921 9.851686 AAAATTCTTTCCTATTTTGCCTTTTCT 57.148 25.926 0.00 0.00 33.84 2.52
2631 2922 9.494271 AAATTCTTTCCTATTTTGCCTTTTCTC 57.506 29.630 0.00 0.00 0.00 2.87
2720 3033 2.701107 CAGTCGACTGAGACCTAGTCA 58.299 52.381 36.73 0.00 46.59 3.41
2730 3043 6.441222 ACTGAGACCTAGTCATACCCAATTA 58.559 40.000 0.00 0.00 34.60 1.40
2731 3044 7.076446 ACTGAGACCTAGTCATACCCAATTAT 58.924 38.462 0.00 0.00 34.60 1.28
2734 3047 9.256228 TGAGACCTAGTCATACCCAATTATATC 57.744 37.037 0.00 0.00 34.60 1.63
2735 3048 8.611051 AGACCTAGTCATACCCAATTATATCC 57.389 38.462 0.00 0.00 34.60 2.59
2755 3070 6.916360 ATCCATGGTTGATAAGTTTGTGTT 57.084 33.333 12.58 0.00 0.00 3.32
2757 3072 5.242838 TCCATGGTTGATAAGTTTGTGTTCC 59.757 40.000 12.58 0.00 0.00 3.62
2776 3091 7.669304 TGTGTTCCAAAGAATATTTCTGATGGA 59.331 33.333 15.62 15.62 46.44 3.41
2780 3095 8.229253 TCCAAAGAATATTTCTGATGGATGTG 57.771 34.615 15.62 0.00 44.80 3.21
2786 3101 9.293404 AGAATATTTCTGATGGATGTGTAATGG 57.707 33.333 0.00 0.00 38.91 3.16
2787 3102 9.071276 GAATATTTCTGATGGATGTGTAATGGT 57.929 33.333 0.00 0.00 0.00 3.55
2788 3103 6.704289 ATTTCTGATGGATGTGTAATGGTG 57.296 37.500 0.00 0.00 0.00 4.17
2789 3104 5.434182 TTCTGATGGATGTGTAATGGTGA 57.566 39.130 0.00 0.00 0.00 4.02
2800 3115 9.587772 GGATGTGTAATGGTGATCATATACTAC 57.412 37.037 0.00 0.00 34.44 2.73
2801 3116 9.587772 GATGTGTAATGGTGATCATATACTACC 57.412 37.037 0.00 0.00 34.44 3.18
2802 3117 7.903145 TGTGTAATGGTGATCATATACTACCC 58.097 38.462 0.00 0.00 34.44 3.69
2805 3120 6.875972 AATGGTGATCATATACTACCCCTC 57.124 41.667 0.00 0.00 34.44 4.30
2807 3122 3.700038 GGTGATCATATACTACCCCTCCG 59.300 52.174 0.00 0.00 0.00 4.63
2808 3123 4.342359 GTGATCATATACTACCCCTCCGT 58.658 47.826 0.00 0.00 0.00 4.69
2809 3124 4.771054 GTGATCATATACTACCCCTCCGTT 59.229 45.833 0.00 0.00 0.00 4.44
2810 3125 5.014858 TGATCATATACTACCCCTCCGTTC 58.985 45.833 0.00 0.00 0.00 3.95
2811 3126 3.771216 TCATATACTACCCCTCCGTTCC 58.229 50.000 0.00 0.00 0.00 3.62
2831 3152 5.103290 TCCGAATTAACTGTTGCTGAAAC 57.897 39.130 2.69 0.00 39.41 2.78
2846 3167 4.705507 TGCTGAAACGGAGAGAGTAATACT 59.294 41.667 0.00 0.00 0.00 2.12
2849 3170 6.035112 GCTGAAACGGAGAGAGTAATACTTTG 59.965 42.308 0.00 0.00 0.00 2.77
2850 3171 7.223260 TGAAACGGAGAGAGTAATACTTTGA 57.777 36.000 0.00 0.00 0.00 2.69
2851 3172 7.088905 TGAAACGGAGAGAGTAATACTTTGAC 58.911 38.462 0.00 0.00 0.00 3.18
2852 3173 6.585695 AACGGAGAGAGTAATACTTTGACA 57.414 37.500 0.00 0.00 0.00 3.58
2853 3174 6.197364 ACGGAGAGAGTAATACTTTGACAG 57.803 41.667 0.00 0.00 0.00 3.51
2854 3175 5.711036 ACGGAGAGAGTAATACTTTGACAGT 59.289 40.000 0.00 0.00 39.87 3.55
2855 3176 6.883217 ACGGAGAGAGTAATACTTTGACAGTA 59.117 38.462 0.00 0.00 42.49 2.74
2857 3178 9.053840 CGGAGAGAGTAATACTTTGACAGTATA 57.946 37.037 0.00 0.00 46.53 1.47
2869 3190 7.736893 ACTTTGACAGTATATAATCCCACTCC 58.263 38.462 0.00 0.00 31.97 3.85
2870 3191 6.681729 TTGACAGTATATAATCCCACTCCC 57.318 41.667 0.00 0.00 0.00 4.30
2871 3192 5.091552 TGACAGTATATAATCCCACTCCCC 58.908 45.833 0.00 0.00 0.00 4.81
2872 3193 5.091552 GACAGTATATAATCCCACTCCCCA 58.908 45.833 0.00 0.00 0.00 4.96
2873 3194 4.844655 ACAGTATATAATCCCACTCCCCAC 59.155 45.833 0.00 0.00 0.00 4.61
2874 3195 4.844085 CAGTATATAATCCCACTCCCCACA 59.156 45.833 0.00 0.00 0.00 4.17
2875 3196 5.309543 CAGTATATAATCCCACTCCCCACAA 59.690 44.000 0.00 0.00 0.00 3.33
2876 3197 4.724279 ATATAATCCCACTCCCCACAAC 57.276 45.455 0.00 0.00 0.00 3.32
2877 3198 2.053747 TAATCCCACTCCCCACAACT 57.946 50.000 0.00 0.00 0.00 3.16
2878 3199 2.053747 AATCCCACTCCCCACAACTA 57.946 50.000 0.00 0.00 0.00 2.24
2879 3200 1.286248 ATCCCACTCCCCACAACTAC 58.714 55.000 0.00 0.00 0.00 2.73
2880 3201 0.192566 TCCCACTCCCCACAACTACT 59.807 55.000 0.00 0.00 0.00 2.57
2881 3202 0.324943 CCCACTCCCCACAACTACTG 59.675 60.000 0.00 0.00 0.00 2.74
2882 3203 0.324943 CCACTCCCCACAACTACTGG 59.675 60.000 0.00 0.00 0.00 4.00
2883 3204 1.056660 CACTCCCCACAACTACTGGT 58.943 55.000 0.00 0.00 0.00 4.00
2884 3205 1.420138 CACTCCCCACAACTACTGGTT 59.580 52.381 0.00 0.00 38.93 3.67
2885 3206 1.697982 ACTCCCCACAACTACTGGTTC 59.302 52.381 0.00 0.00 35.74 3.62
2886 3207 1.978580 CTCCCCACAACTACTGGTTCT 59.021 52.381 0.00 0.00 35.74 3.01
2887 3208 3.170717 CTCCCCACAACTACTGGTTCTA 58.829 50.000 0.00 0.00 35.74 2.10
2888 3209 3.581332 CTCCCCACAACTACTGGTTCTAA 59.419 47.826 0.00 0.00 35.74 2.10
2889 3210 3.975312 TCCCCACAACTACTGGTTCTAAA 59.025 43.478 0.00 0.00 35.74 1.85
2890 3211 4.412858 TCCCCACAACTACTGGTTCTAAAA 59.587 41.667 0.00 0.00 35.74 1.52
2891 3212 4.760204 CCCCACAACTACTGGTTCTAAAAG 59.240 45.833 0.00 0.00 35.74 2.27
2892 3213 5.374071 CCCACAACTACTGGTTCTAAAAGT 58.626 41.667 0.00 0.00 35.74 2.66
2893 3214 6.464749 CCCCACAACTACTGGTTCTAAAAGTA 60.465 42.308 0.00 0.00 35.74 2.24
2894 3215 6.426025 CCCACAACTACTGGTTCTAAAAGTAC 59.574 42.308 0.00 0.00 35.74 2.73
2895 3216 6.987992 CCACAACTACTGGTTCTAAAAGTACA 59.012 38.462 0.00 0.00 35.74 2.90
2896 3217 7.660208 CCACAACTACTGGTTCTAAAAGTACAT 59.340 37.037 0.00 0.00 35.74 2.29
2897 3218 8.495949 CACAACTACTGGTTCTAAAAGTACATG 58.504 37.037 0.00 0.00 35.74 3.21
2898 3219 8.426489 ACAACTACTGGTTCTAAAAGTACATGA 58.574 33.333 0.00 0.00 35.74 3.07
2899 3220 8.709646 CAACTACTGGTTCTAAAAGTACATGAC 58.290 37.037 0.00 0.00 35.74 3.06
2900 3221 8.191534 ACTACTGGTTCTAAAAGTACATGACT 57.808 34.615 0.00 0.00 41.56 3.41
2916 3237 9.425577 AGTACATGACTTAGCTAGTTTTCTTTC 57.574 33.333 0.00 0.00 37.17 2.62
2917 3238 7.352719 ACATGACTTAGCTAGTTTTCTTTCG 57.647 36.000 0.00 0.00 37.17 3.46
2918 3239 7.152645 ACATGACTTAGCTAGTTTTCTTTCGA 58.847 34.615 0.00 0.00 37.17 3.71
2919 3240 7.819900 ACATGACTTAGCTAGTTTTCTTTCGAT 59.180 33.333 0.00 0.00 37.17 3.59
2920 3241 7.582435 TGACTTAGCTAGTTTTCTTTCGATG 57.418 36.000 0.00 0.00 37.17 3.84
2921 3242 7.152645 TGACTTAGCTAGTTTTCTTTCGATGT 58.847 34.615 0.00 0.00 37.17 3.06
2922 3243 8.301720 TGACTTAGCTAGTTTTCTTTCGATGTA 58.698 33.333 0.00 0.00 37.17 2.29
2923 3244 9.136952 GACTTAGCTAGTTTTCTTTCGATGTAA 57.863 33.333 0.00 0.00 37.17 2.41
2924 3245 9.485206 ACTTAGCTAGTTTTCTTTCGATGTAAA 57.515 29.630 0.00 0.00 31.29 2.01
2927 3248 8.603242 AGCTAGTTTTCTTTCGATGTAAAAGA 57.397 30.769 0.00 0.00 40.14 2.52
2928 3249 8.496751 AGCTAGTTTTCTTTCGATGTAAAAGAC 58.503 33.333 0.00 0.00 41.24 3.01
2929 3250 8.496751 GCTAGTTTTCTTTCGATGTAAAAGACT 58.503 33.333 0.00 0.00 41.24 3.24
2932 3253 9.543783 AGTTTTCTTTCGATGTAAAAGACTAGT 57.456 29.630 0.00 0.00 41.24 2.57
2949 3270 9.570488 AAAGACTAGTATTACTCAATCAACGAC 57.430 33.333 2.61 0.00 0.00 4.34
2950 3271 8.277490 AGACTAGTATTACTCAATCAACGACA 57.723 34.615 0.00 0.00 0.00 4.35
2951 3272 8.182881 AGACTAGTATTACTCAATCAACGACAC 58.817 37.037 0.00 0.00 0.00 3.67
2952 3273 7.823665 ACTAGTATTACTCAATCAACGACACA 58.176 34.615 0.00 0.00 0.00 3.72
2953 3274 8.467598 ACTAGTATTACTCAATCAACGACACAT 58.532 33.333 0.00 0.00 0.00 3.21
2954 3275 7.525688 AGTATTACTCAATCAACGACACATG 57.474 36.000 0.00 0.00 0.00 3.21
2955 3276 4.661993 TTACTCAATCAACGACACATGC 57.338 40.909 0.00 0.00 0.00 4.06
2956 3277 2.493035 ACTCAATCAACGACACATGCA 58.507 42.857 0.00 0.00 0.00 3.96
2957 3278 2.224079 ACTCAATCAACGACACATGCAC 59.776 45.455 0.00 0.00 0.00 4.57
2958 3279 2.216898 TCAATCAACGACACATGCACA 58.783 42.857 0.00 0.00 0.00 4.57
2959 3280 2.223845 TCAATCAACGACACATGCACAG 59.776 45.455 0.00 0.00 0.00 3.66
2960 3281 0.518636 ATCAACGACACATGCACAGC 59.481 50.000 0.00 0.00 0.00 4.40
2961 3282 0.532640 TCAACGACACATGCACAGCT 60.533 50.000 0.00 0.00 0.00 4.24
2962 3283 0.110509 CAACGACACATGCACAGCTC 60.111 55.000 0.00 0.00 0.00 4.09
2963 3284 1.230635 AACGACACATGCACAGCTCC 61.231 55.000 0.00 0.00 0.00 4.70
2964 3285 1.375140 CGACACATGCACAGCTCCT 60.375 57.895 0.00 0.00 0.00 3.69
2965 3286 1.357258 CGACACATGCACAGCTCCTC 61.357 60.000 0.00 0.00 0.00 3.71
2966 3287 0.036577 GACACATGCACAGCTCCTCT 60.037 55.000 0.00 0.00 0.00 3.69
2967 3288 0.399454 ACACATGCACAGCTCCTCTT 59.601 50.000 0.00 0.00 0.00 2.85
2968 3289 1.202855 ACACATGCACAGCTCCTCTTT 60.203 47.619 0.00 0.00 0.00 2.52
2969 3290 1.884579 CACATGCACAGCTCCTCTTTT 59.115 47.619 0.00 0.00 0.00 2.27
2970 3291 2.295349 CACATGCACAGCTCCTCTTTTT 59.705 45.455 0.00 0.00 0.00 1.94
2971 3292 2.555757 ACATGCACAGCTCCTCTTTTTC 59.444 45.455 0.00 0.00 0.00 2.29
2972 3293 1.229428 TGCACAGCTCCTCTTTTTCG 58.771 50.000 0.00 0.00 0.00 3.46
2973 3294 0.110010 GCACAGCTCCTCTTTTTCGC 60.110 55.000 0.00 0.00 0.00 4.70
2974 3295 0.164647 CACAGCTCCTCTTTTTCGCG 59.835 55.000 0.00 0.00 0.00 5.87
2975 3296 0.951040 ACAGCTCCTCTTTTTCGCGG 60.951 55.000 6.13 0.00 0.00 6.46
2976 3297 1.376037 AGCTCCTCTTTTTCGCGGG 60.376 57.895 6.13 0.00 0.00 6.13
2977 3298 2.399356 GCTCCTCTTTTTCGCGGGG 61.399 63.158 6.13 0.00 0.00 5.73
2978 3299 1.003718 CTCCTCTTTTTCGCGGGGT 60.004 57.895 6.13 0.00 0.00 4.95
2979 3300 0.248289 CTCCTCTTTTTCGCGGGGTA 59.752 55.000 6.13 0.00 0.00 3.69
2980 3301 0.686224 TCCTCTTTTTCGCGGGGTAA 59.314 50.000 6.13 0.00 0.00 2.85
2981 3302 1.072015 TCCTCTTTTTCGCGGGGTAAA 59.928 47.619 6.13 0.00 0.00 2.01
2982 3303 1.881324 CCTCTTTTTCGCGGGGTAAAA 59.119 47.619 6.13 2.34 0.00 1.52
2983 3304 2.095415 CCTCTTTTTCGCGGGGTAAAAG 60.095 50.000 22.31 22.31 39.21 2.27
2984 3305 1.267533 TCTTTTTCGCGGGGTAAAAGC 59.732 47.619 23.03 0.00 38.26 3.51
2985 3306 1.001158 CTTTTTCGCGGGGTAAAAGCA 60.001 47.619 18.71 0.00 33.63 3.91
2986 3307 1.030457 TTTTCGCGGGGTAAAAGCAA 58.970 45.000 6.13 0.00 0.00 3.91
2987 3308 1.249407 TTTCGCGGGGTAAAAGCAAT 58.751 45.000 6.13 0.00 0.00 3.56
2988 3309 1.249407 TTCGCGGGGTAAAAGCAATT 58.751 45.000 6.13 0.00 0.00 2.32
2989 3310 0.806241 TCGCGGGGTAAAAGCAATTC 59.194 50.000 6.13 0.00 0.00 2.17
2990 3311 0.523966 CGCGGGGTAAAAGCAATTCA 59.476 50.000 0.00 0.00 0.00 2.57
2991 3312 1.134175 CGCGGGGTAAAAGCAATTCAT 59.866 47.619 0.00 0.00 0.00 2.57
2992 3313 2.416701 CGCGGGGTAAAAGCAATTCATT 60.417 45.455 0.00 0.00 0.00 2.57
2993 3314 3.181495 CGCGGGGTAAAAGCAATTCATTA 60.181 43.478 0.00 0.00 0.00 1.90
2994 3315 4.109766 GCGGGGTAAAAGCAATTCATTAC 58.890 43.478 0.00 0.00 0.00 1.89
2995 3316 4.142249 GCGGGGTAAAAGCAATTCATTACT 60.142 41.667 0.00 0.00 0.00 2.24
2996 3317 5.623596 GCGGGGTAAAAGCAATTCATTACTT 60.624 40.000 0.00 0.00 0.00 2.24
2997 3318 6.033966 CGGGGTAAAAGCAATTCATTACTTC 58.966 40.000 0.00 0.00 0.00 3.01
2998 3319 6.349777 CGGGGTAAAAGCAATTCATTACTTCA 60.350 38.462 0.00 0.00 0.00 3.02
2999 3320 7.035612 GGGGTAAAAGCAATTCATTACTTCAG 58.964 38.462 0.00 0.00 0.00 3.02
3000 3321 7.309805 GGGGTAAAAGCAATTCATTACTTCAGT 60.310 37.037 0.00 0.00 0.00 3.41
3001 3322 8.736244 GGGTAAAAGCAATTCATTACTTCAGTA 58.264 33.333 0.00 0.00 0.00 2.74
3043 3364 9.881649 TCATTCATAATGATAGTGCTAATCTCC 57.118 33.333 0.00 0.00 42.69 3.71
3044 3365 9.887629 CATTCATAATGATAGTGCTAATCTCCT 57.112 33.333 0.00 0.00 41.46 3.69
3048 3369 9.814899 CATAATGATAGTGCTAATCTCCTAAGG 57.185 37.037 0.00 0.00 0.00 2.69
3049 3370 9.775539 ATAATGATAGTGCTAATCTCCTAAGGA 57.224 33.333 0.00 0.00 0.00 3.36
3050 3371 6.902771 TGATAGTGCTAATCTCCTAAGGAC 57.097 41.667 0.00 0.00 32.33 3.85
3051 3372 6.615617 TGATAGTGCTAATCTCCTAAGGACT 58.384 40.000 1.46 1.46 43.30 3.85
3052 3373 7.756614 TGATAGTGCTAATCTCCTAAGGACTA 58.243 38.462 5.58 5.58 44.72 2.59
3055 3376 7.922699 AGTGCTAATCTCCTAAGGACTATTT 57.077 36.000 0.00 0.00 39.74 1.40
3056 3377 7.731054 AGTGCTAATCTCCTAAGGACTATTTG 58.269 38.462 0.00 0.00 39.74 2.32
3057 3378 6.425417 GTGCTAATCTCCTAAGGACTATTTGC 59.575 42.308 0.00 0.00 34.54 3.68
3058 3379 6.327626 TGCTAATCTCCTAAGGACTATTTGCT 59.672 38.462 2.94 0.00 34.77 3.91
3059 3380 7.509318 TGCTAATCTCCTAAGGACTATTTGCTA 59.491 37.037 2.94 0.00 34.77 3.49
3060 3381 8.368668 GCTAATCTCCTAAGGACTATTTGCTAA 58.631 37.037 0.00 0.00 32.98 3.09
3061 3382 9.699703 CTAATCTCCTAAGGACTATTTGCTAAC 57.300 37.037 0.00 0.00 0.00 2.34
3062 3383 6.481434 TCTCCTAAGGACTATTTGCTAACC 57.519 41.667 0.00 0.00 0.00 2.85
3063 3384 5.962031 TCTCCTAAGGACTATTTGCTAACCA 59.038 40.000 0.00 0.00 0.00 3.67
3064 3385 6.442564 TCTCCTAAGGACTATTTGCTAACCAA 59.557 38.462 0.00 0.00 0.00 3.67
3065 3386 6.412214 TCCTAAGGACTATTTGCTAACCAAC 58.588 40.000 0.00 0.00 31.97 3.77
3066 3387 6.013206 TCCTAAGGACTATTTGCTAACCAACA 60.013 38.462 0.00 0.00 31.97 3.33
3067 3388 6.657541 CCTAAGGACTATTTGCTAACCAACAA 59.342 38.462 0.00 0.00 31.97 2.83
3068 3389 7.339466 CCTAAGGACTATTTGCTAACCAACAAT 59.661 37.037 0.00 0.00 31.97 2.71
3069 3390 6.515272 AGGACTATTTGCTAACCAACAATG 57.485 37.500 0.00 0.00 31.97 2.82
3070 3391 5.102313 GGACTATTTGCTAACCAACAATGC 58.898 41.667 0.00 0.00 31.97 3.56
3071 3392 5.072040 ACTATTTGCTAACCAACAATGCC 57.928 39.130 0.00 0.00 31.97 4.40
3072 3393 2.430546 TTTGCTAACCAACAATGCCG 57.569 45.000 0.00 0.00 31.97 5.69
3073 3394 1.323412 TTGCTAACCAACAATGCCGT 58.677 45.000 0.00 0.00 0.00 5.68
3074 3395 1.323412 TGCTAACCAACAATGCCGTT 58.677 45.000 0.00 0.00 0.00 4.44
3075 3396 1.683917 TGCTAACCAACAATGCCGTTT 59.316 42.857 0.00 0.00 0.00 3.60
3076 3397 2.101582 TGCTAACCAACAATGCCGTTTT 59.898 40.909 0.00 0.00 0.00 2.43
3077 3398 3.127589 GCTAACCAACAATGCCGTTTTT 58.872 40.909 0.00 0.00 0.00 1.94
3102 3423 5.667539 TGAATTTTTGTTCACAAGGACCA 57.332 34.783 0.00 0.00 37.15 4.02
3103 3424 5.415221 TGAATTTTTGTTCACAAGGACCAC 58.585 37.500 0.00 0.00 37.15 4.16
3104 3425 3.878160 TTTTTGTTCACAAGGACCACC 57.122 42.857 0.00 0.00 37.15 4.61
3105 3426 7.760470 TGAATTTTTGTTCACAAGGACCACCT 61.760 38.462 0.00 0.00 39.48 4.00
3106 3427 9.666668 TGAATTTTTGTTCACAAGGACCACCTG 62.667 40.741 0.00 0.00 38.60 4.00
3113 3434 4.003788 AGGACCACCTGCCGAACG 62.004 66.667 0.00 0.00 45.92 3.95
3123 3444 4.440214 GCCGAACGCAATTGACAG 57.560 55.556 10.34 1.95 37.47 3.51
3124 3445 1.866237 GCCGAACGCAATTGACAGA 59.134 52.632 10.34 0.00 37.47 3.41
3125 3446 0.237235 GCCGAACGCAATTGACAGAA 59.763 50.000 10.34 0.00 37.47 3.02
3126 3447 1.334599 GCCGAACGCAATTGACAGAAA 60.335 47.619 10.34 0.00 37.47 2.52
3127 3448 2.856720 GCCGAACGCAATTGACAGAAAA 60.857 45.455 10.34 0.00 37.47 2.29
3128 3449 2.973224 CCGAACGCAATTGACAGAAAAG 59.027 45.455 10.34 0.00 0.00 2.27
3129 3450 3.303725 CCGAACGCAATTGACAGAAAAGA 60.304 43.478 10.34 0.00 0.00 2.52
3130 3451 3.659444 CGAACGCAATTGACAGAAAAGAC 59.341 43.478 10.34 0.00 0.00 3.01
3131 3452 3.626028 ACGCAATTGACAGAAAAGACC 57.374 42.857 10.34 0.00 0.00 3.85
3132 3453 2.948979 ACGCAATTGACAGAAAAGACCA 59.051 40.909 10.34 0.00 0.00 4.02
3133 3454 3.243068 ACGCAATTGACAGAAAAGACCAC 60.243 43.478 10.34 0.00 0.00 4.16
3134 3455 3.642705 GCAATTGACAGAAAAGACCACC 58.357 45.455 10.34 0.00 0.00 4.61
3135 3456 3.552890 GCAATTGACAGAAAAGACCACCC 60.553 47.826 10.34 0.00 0.00 4.61
3136 3457 3.593442 ATTGACAGAAAAGACCACCCA 57.407 42.857 0.00 0.00 0.00 4.51
3137 3458 3.593442 TTGACAGAAAAGACCACCCAT 57.407 42.857 0.00 0.00 0.00 4.00
3138 3459 2.862541 TGACAGAAAAGACCACCCATG 58.137 47.619 0.00 0.00 0.00 3.66
3139 3460 2.441375 TGACAGAAAAGACCACCCATGA 59.559 45.455 0.00 0.00 0.00 3.07
3140 3461 3.074390 TGACAGAAAAGACCACCCATGAT 59.926 43.478 0.00 0.00 0.00 2.45
3141 3462 4.082125 GACAGAAAAGACCACCCATGATT 58.918 43.478 0.00 0.00 0.00 2.57
3142 3463 4.082125 ACAGAAAAGACCACCCATGATTC 58.918 43.478 0.00 0.00 0.00 2.52
3143 3464 4.081406 CAGAAAAGACCACCCATGATTCA 58.919 43.478 0.00 0.00 0.00 2.57
3144 3465 4.082125 AGAAAAGACCACCCATGATTCAC 58.918 43.478 0.00 0.00 0.00 3.18
3145 3466 3.524095 AAAGACCACCCATGATTCACA 57.476 42.857 0.00 0.00 0.00 3.58
3146 3467 3.744940 AAGACCACCCATGATTCACAT 57.255 42.857 0.00 0.00 40.17 3.21
3147 3468 3.744940 AGACCACCCATGATTCACATT 57.255 42.857 0.00 0.00 37.07 2.71
3148 3469 3.359033 AGACCACCCATGATTCACATTG 58.641 45.455 0.00 0.00 37.07 2.82
3149 3470 2.428171 GACCACCCATGATTCACATTGG 59.572 50.000 0.00 0.00 44.40 3.16
3150 3471 1.137479 CCACCCATGATTCACATTGGC 59.863 52.381 0.00 0.00 43.16 4.52
3151 3472 1.826096 CACCCATGATTCACATTGGCA 59.174 47.619 0.00 0.00 43.16 4.92
3152 3473 2.234168 CACCCATGATTCACATTGGCAA 59.766 45.455 0.68 0.68 43.16 4.52
3153 3474 2.905085 ACCCATGATTCACATTGGCAAA 59.095 40.909 3.01 0.00 43.16 3.68
3154 3475 3.327172 ACCCATGATTCACATTGGCAAAA 59.673 39.130 3.01 0.00 43.16 2.44
3155 3476 3.685756 CCCATGATTCACATTGGCAAAAC 59.314 43.478 3.01 0.00 35.51 2.43
3156 3477 3.368539 CCATGATTCACATTGGCAAAACG 59.631 43.478 3.01 0.00 37.07 3.60
3157 3478 3.023946 TGATTCACATTGGCAAAACGG 57.976 42.857 3.01 0.00 0.00 4.44
3158 3479 2.625314 TGATTCACATTGGCAAAACGGA 59.375 40.909 3.01 0.00 0.00 4.69
3159 3480 2.500509 TTCACATTGGCAAAACGGAC 57.499 45.000 3.01 0.00 0.00 4.79
3160 3481 0.671251 TCACATTGGCAAAACGGACC 59.329 50.000 3.01 0.00 0.00 4.46
3161 3482 0.387202 CACATTGGCAAAACGGACCA 59.613 50.000 3.01 0.00 0.00 4.02
3162 3483 0.673437 ACATTGGCAAAACGGACCAG 59.327 50.000 3.01 0.00 34.28 4.00
3163 3484 0.667184 CATTGGCAAAACGGACCAGC 60.667 55.000 3.01 0.00 34.28 4.85
3164 3485 0.827507 ATTGGCAAAACGGACCAGCT 60.828 50.000 3.01 0.00 34.28 4.24
3165 3486 1.733402 TTGGCAAAACGGACCAGCTG 61.733 55.000 6.78 6.78 34.28 4.24
3166 3487 1.896660 GGCAAAACGGACCAGCTGA 60.897 57.895 17.39 0.00 0.00 4.26
3167 3488 1.576421 GCAAAACGGACCAGCTGAG 59.424 57.895 17.39 8.04 0.00 3.35
3168 3489 1.166531 GCAAAACGGACCAGCTGAGT 61.167 55.000 17.39 11.66 0.00 3.41
3169 3490 1.308998 CAAAACGGACCAGCTGAGTT 58.691 50.000 17.39 12.59 0.00 3.01
3170 3491 1.002468 CAAAACGGACCAGCTGAGTTG 60.002 52.381 17.39 10.45 0.00 3.16
3171 3492 0.180406 AAACGGACCAGCTGAGTTGT 59.820 50.000 17.39 3.76 0.00 3.32
3172 3493 0.532862 AACGGACCAGCTGAGTTGTG 60.533 55.000 17.39 7.84 0.00 3.33
3173 3494 1.669115 CGGACCAGCTGAGTTGTGG 60.669 63.158 17.39 0.00 37.38 4.17
3174 3495 1.968540 GGACCAGCTGAGTTGTGGC 60.969 63.158 17.39 0.00 34.40 5.01
3175 3496 2.281070 ACCAGCTGAGTTGTGGCG 60.281 61.111 17.39 0.00 34.40 5.69
3176 3497 3.052082 CCAGCTGAGTTGTGGCGG 61.052 66.667 17.39 0.00 0.00 6.13
3177 3498 3.730761 CAGCTGAGTTGTGGCGGC 61.731 66.667 8.42 0.00 36.66 6.53
3178 3499 4.254709 AGCTGAGTTGTGGCGGCA 62.255 61.111 7.97 7.97 38.84 5.69
3179 3500 3.730761 GCTGAGTTGTGGCGGCAG 61.731 66.667 13.91 0.00 36.43 4.85
3180 3501 3.052082 CTGAGTTGTGGCGGCAGG 61.052 66.667 13.91 0.00 0.00 4.85
3181 3502 3.832237 CTGAGTTGTGGCGGCAGGT 62.832 63.158 13.91 0.00 0.00 4.00
3182 3503 3.357079 GAGTTGTGGCGGCAGGTG 61.357 66.667 13.91 0.00 0.00 4.00
3195 3516 4.996434 AGGTGCGCCAGCTGACAC 62.996 66.667 20.59 19.04 40.87 3.67
3202 3523 4.969196 CCAGCTGACACGTGGCGT 62.969 66.667 21.57 2.17 42.36 5.68
3203 3524 3.406361 CAGCTGACACGTGGCGTC 61.406 66.667 21.57 12.60 38.32 5.19
3204 3525 3.606662 AGCTGACACGTGGCGTCT 61.607 61.111 21.57 14.85 38.32 4.18
3205 3526 3.406361 GCTGACACGTGGCGTCTG 61.406 66.667 21.57 13.08 38.32 3.51
3206 3527 3.406361 CTGACACGTGGCGTCTGC 61.406 66.667 21.57 0.60 38.32 4.26
3233 3554 3.785859 CGAAGGCTGCAGGGGCTA 61.786 66.667 17.12 0.00 41.31 3.93
3234 3555 2.124529 GAAGGCTGCAGGGGCTAC 60.125 66.667 17.12 0.00 41.31 3.58
3235 3556 3.705934 GAAGGCTGCAGGGGCTACC 62.706 68.421 17.12 6.78 41.31 3.18
3274 3595 2.763215 TGGCCCACCACAGGAATC 59.237 61.111 0.00 0.00 42.67 2.52
3275 3596 2.438434 GGCCCACCACAGGAATCG 60.438 66.667 0.00 0.00 35.26 3.34
3276 3597 2.438434 GCCCACCACAGGAATCGG 60.438 66.667 0.00 0.00 0.00 4.18
3277 3598 3.077907 CCCACCACAGGAATCGGT 58.922 61.111 0.00 0.00 0.00 4.69
3281 3602 3.625745 ACCACAGGAATCGGTGAAC 57.374 52.632 5.43 0.00 40.69 3.18
3282 3603 0.320421 ACCACAGGAATCGGTGAACG 60.320 55.000 5.43 0.00 40.69 3.95
3283 3604 1.635663 CCACAGGAATCGGTGAACGC 61.636 60.000 5.43 0.00 40.69 4.84
3284 3605 0.948623 CACAGGAATCGGTGAACGCA 60.949 55.000 0.00 0.00 40.69 5.24
3285 3606 0.670546 ACAGGAATCGGTGAACGCAG 60.671 55.000 0.00 0.00 43.86 5.18
3286 3607 1.741770 AGGAATCGGTGAACGCAGC 60.742 57.895 0.00 0.00 43.86 5.25
3287 3608 1.741770 GGAATCGGTGAACGCAGCT 60.742 57.895 0.00 0.00 43.86 4.24
3288 3609 1.421485 GAATCGGTGAACGCAGCTG 59.579 57.895 10.11 10.11 43.86 4.24
3289 3610 1.005037 AATCGGTGAACGCAGCTGA 60.005 52.632 20.43 0.00 43.86 4.26
3290 3611 0.391661 AATCGGTGAACGCAGCTGAT 60.392 50.000 20.43 0.42 43.86 2.90
3291 3612 1.086067 ATCGGTGAACGCAGCTGATG 61.086 55.000 20.43 11.63 43.86 3.07
3301 3622 4.435436 AGCTGATGCGCGACGGAA 62.435 61.111 12.10 0.00 45.42 4.30
3302 3623 4.210304 GCTGATGCGCGACGGAAC 62.210 66.667 12.10 0.00 0.00 3.62
3350 3671 4.063967 CCTCGTGTGGCGGCACTA 62.064 66.667 37.33 23.40 41.72 2.74
3351 3672 2.809601 CTCGTGTGGCGGCACTAC 60.810 66.667 37.33 30.08 41.72 2.73
3352 3673 3.282745 CTCGTGTGGCGGCACTACT 62.283 63.158 37.33 0.00 41.72 2.57
3353 3674 3.112075 CGTGTGGCGGCACTACTG 61.112 66.667 37.33 24.04 37.24 2.74
3360 3681 3.972227 CGGCACTACTGCAGCTTT 58.028 55.556 15.27 0.00 46.28 3.51
3361 3682 2.247790 CGGCACTACTGCAGCTTTT 58.752 52.632 15.27 0.00 46.28 2.27
3362 3683 0.593128 CGGCACTACTGCAGCTTTTT 59.407 50.000 15.27 0.00 46.28 1.94
3384 3705 5.603170 TTTAGGGTCGACAGTATTTAGGG 57.397 43.478 18.91 0.00 0.00 3.53
3385 3706 1.761198 AGGGTCGACAGTATTTAGGGC 59.239 52.381 18.91 0.00 0.00 5.19
3386 3707 1.761198 GGGTCGACAGTATTTAGGGCT 59.239 52.381 18.91 0.00 0.00 5.19
3387 3708 2.483188 GGGTCGACAGTATTTAGGGCTG 60.483 54.545 18.91 0.00 36.41 4.85
3388 3709 2.483188 GGTCGACAGTATTTAGGGCTGG 60.483 54.545 18.91 0.00 34.79 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 6.477253 ACCTCCCTAAATCAGAAGAAGAAAC 58.523 40.000 0.00 0.00 0.00 2.78
139 183 3.371487 CCATATTGGACCTTGTACTGCCA 60.371 47.826 0.00 0.00 40.96 4.92
157 201 3.774766 ACCTAGACATCAGCACAACCATA 59.225 43.478 0.00 0.00 0.00 2.74
254 324 4.221703 TGCCATTTAATCAATCAACCGGTT 59.778 37.500 15.86 15.86 0.00 4.44
354 582 9.803315 AACACGATATATGGATCATATGTACAC 57.197 33.333 0.00 0.00 37.57 2.90
426 654 5.126384 CGATCTCCAAAAGAGGTAGAGTTCT 59.874 44.000 0.00 0.00 43.44 3.01
491 721 4.202346 TGACTGATCACAGAAACACATCCA 60.202 41.667 0.00 0.00 46.03 3.41
720 967 5.688807 AGATTTTGGATGGATCACTAGTGG 58.311 41.667 22.48 4.59 0.00 4.00
721 968 6.708054 GGTAGATTTTGGATGGATCACTAGTG 59.292 42.308 17.17 17.17 0.00 2.74
722 969 6.386927 TGGTAGATTTTGGATGGATCACTAGT 59.613 38.462 0.00 0.00 0.00 2.57
723 970 6.830912 TGGTAGATTTTGGATGGATCACTAG 58.169 40.000 0.00 0.00 0.00 2.57
724 971 6.823286 TGGTAGATTTTGGATGGATCACTA 57.177 37.500 0.00 0.00 0.00 2.74
725 972 5.715439 TGGTAGATTTTGGATGGATCACT 57.285 39.130 0.00 0.00 0.00 3.41
726 973 6.773976 TTTGGTAGATTTTGGATGGATCAC 57.226 37.500 0.00 0.00 0.00 3.06
892 1174 3.194968 GCTTTGAGTGGGTGCTACTAGTA 59.805 47.826 1.89 1.89 0.00 1.82
1467 1755 3.362262 TCGACCCACTCGAGGTTG 58.638 61.111 18.41 10.22 46.75 3.77
1645 1933 4.309950 GACCAGTTCCCGCACCGT 62.310 66.667 0.00 0.00 0.00 4.83
1656 1944 0.034896 CCTTGTACTTGGCGACCAGT 59.965 55.000 0.00 0.00 33.81 4.00
1731 2019 1.446792 CATGTCGAAGGCGCAGAGT 60.447 57.895 10.83 0.00 37.46 3.24
2327 2615 1.909302 CCCTGGTCTTCTTCTTGCCTA 59.091 52.381 0.00 0.00 0.00 3.93
2375 2663 7.666804 ACGTATTCACAAACTAATTAACCCCTT 59.333 33.333 0.00 0.00 0.00 3.95
2469 2760 7.168972 CACACATAAACATTTGTACCAAACCAG 59.831 37.037 0.00 0.00 0.00 4.00
2484 2775 4.203226 ACATGACACACCACACATAAACA 58.797 39.130 0.00 0.00 0.00 2.83
2532 2823 6.370994 AGAAATAACGAAGTCTCAGTCGACTA 59.629 38.462 19.57 0.00 45.00 2.59
2536 2827 5.391449 TGAGAAATAACGAAGTCTCAGTCG 58.609 41.667 0.00 0.00 45.00 4.18
2541 2832 5.710984 TCCACTGAGAAATAACGAAGTCTC 58.289 41.667 0.00 0.00 45.00 3.36
2548 2839 8.539770 AATATAGCATCCACTGAGAAATAACG 57.460 34.615 0.00 0.00 0.00 3.18
2554 2845 6.753913 AAGGAATATAGCATCCACTGAGAA 57.246 37.500 5.18 0.00 38.23 2.87
2559 2850 7.327064 AGATCAAAGGAATATAGCATCCACT 57.673 36.000 0.00 0.00 38.23 4.00
2566 2857 9.160496 CTCCATACAAGATCAAAGGAATATAGC 57.840 37.037 0.00 0.00 0.00 2.97
2610 2901 8.893219 AAAAGAGAAAAGGCAAAATAGGAAAG 57.107 30.769 0.00 0.00 0.00 2.62
2706 2997 4.332683 TTGGGTATGACTAGGTCTCAGT 57.667 45.455 0.00 0.00 33.15 3.41
2707 2998 5.878406 AATTGGGTATGACTAGGTCTCAG 57.122 43.478 0.00 0.00 33.15 3.35
2708 2999 9.256228 GATATAATTGGGTATGACTAGGTCTCA 57.744 37.037 0.00 0.00 33.15 3.27
2709 3000 8.697292 GGATATAATTGGGTATGACTAGGTCTC 58.303 40.741 0.00 0.00 33.15 3.36
2710 3001 8.184249 TGGATATAATTGGGTATGACTAGGTCT 58.816 37.037 0.00 0.00 33.15 3.85
2717 3030 7.888021 TCAACCATGGATATAATTGGGTATGAC 59.112 37.037 21.47 0.00 33.39 3.06
2730 3043 8.593945 AACACAAACTTATCAACCATGGATAT 57.406 30.769 21.47 10.87 0.00 1.63
2731 3044 7.122055 GGAACACAAACTTATCAACCATGGATA 59.878 37.037 21.47 2.74 0.00 2.59
2734 3047 5.010516 TGGAACACAAACTTATCAACCATGG 59.989 40.000 11.19 11.19 0.00 3.66
2735 3048 6.083098 TGGAACACAAACTTATCAACCATG 57.917 37.500 0.00 0.00 0.00 3.66
2755 3070 7.835682 ACACATCCATCAGAAATATTCTTTGGA 59.164 33.333 17.37 17.37 45.91 3.53
2776 3091 8.540388 GGGTAGTATATGATCACCATTACACAT 58.460 37.037 0.00 0.00 36.71 3.21
2780 3095 7.147707 GGAGGGGTAGTATATGATCACCATTAC 60.148 44.444 0.00 0.00 36.71 1.89
2783 3098 5.281314 GGAGGGGTAGTATATGATCACCAT 58.719 45.833 0.00 0.00 39.25 3.55
2784 3099 4.684724 GGAGGGGTAGTATATGATCACCA 58.315 47.826 0.00 0.00 0.00 4.17
2785 3100 3.700038 CGGAGGGGTAGTATATGATCACC 59.300 52.174 0.00 0.00 0.00 4.02
2786 3101 4.342359 ACGGAGGGGTAGTATATGATCAC 58.658 47.826 0.00 0.00 0.00 3.06
2787 3102 4.669866 ACGGAGGGGTAGTATATGATCA 57.330 45.455 0.00 0.00 0.00 2.92
2788 3103 4.401837 GGAACGGAGGGGTAGTATATGATC 59.598 50.000 0.00 0.00 0.00 2.92
2789 3104 4.351127 GGAACGGAGGGGTAGTATATGAT 58.649 47.826 0.00 0.00 0.00 2.45
2807 3122 4.742438 TCAGCAACAGTTAATTCGGAAC 57.258 40.909 0.00 0.00 0.00 3.62
2808 3123 5.516090 GTTTCAGCAACAGTTAATTCGGAA 58.484 37.500 0.00 0.00 35.18 4.30
2809 3124 4.319190 CGTTTCAGCAACAGTTAATTCGGA 60.319 41.667 0.00 0.00 34.68 4.55
2810 3125 3.906008 CGTTTCAGCAACAGTTAATTCGG 59.094 43.478 0.00 0.00 34.68 4.30
2811 3126 3.906008 CCGTTTCAGCAACAGTTAATTCG 59.094 43.478 0.00 0.00 34.68 3.34
2831 3152 6.197364 ACTGTCAAAGTATTACTCTCTCCG 57.803 41.667 0.00 0.00 37.36 4.63
2846 3167 6.043938 GGGGAGTGGGATTATATACTGTCAAA 59.956 42.308 0.00 0.00 0.00 2.69
2849 3170 5.046520 GTGGGGAGTGGGATTATATACTGTC 60.047 48.000 0.00 0.00 0.00 3.51
2850 3171 4.844655 GTGGGGAGTGGGATTATATACTGT 59.155 45.833 0.00 0.00 0.00 3.55
2851 3172 4.844085 TGTGGGGAGTGGGATTATATACTG 59.156 45.833 0.00 0.00 0.00 2.74
2852 3173 5.101254 TGTGGGGAGTGGGATTATATACT 57.899 43.478 0.00 0.00 0.00 2.12
2853 3174 5.309806 AGTTGTGGGGAGTGGGATTATATAC 59.690 44.000 0.00 0.00 0.00 1.47
2854 3175 5.482580 AGTTGTGGGGAGTGGGATTATATA 58.517 41.667 0.00 0.00 0.00 0.86
2855 3176 4.315993 AGTTGTGGGGAGTGGGATTATAT 58.684 43.478 0.00 0.00 0.00 0.86
2856 3177 3.743132 AGTTGTGGGGAGTGGGATTATA 58.257 45.455 0.00 0.00 0.00 0.98
2857 3178 2.573463 AGTTGTGGGGAGTGGGATTAT 58.427 47.619 0.00 0.00 0.00 1.28
2858 3179 2.053747 AGTTGTGGGGAGTGGGATTA 57.946 50.000 0.00 0.00 0.00 1.75
2859 3180 1.633945 GTAGTTGTGGGGAGTGGGATT 59.366 52.381 0.00 0.00 0.00 3.01
2860 3181 1.203440 AGTAGTTGTGGGGAGTGGGAT 60.203 52.381 0.00 0.00 0.00 3.85
2861 3182 0.192566 AGTAGTTGTGGGGAGTGGGA 59.807 55.000 0.00 0.00 0.00 4.37
2862 3183 0.324943 CAGTAGTTGTGGGGAGTGGG 59.675 60.000 0.00 0.00 0.00 4.61
2863 3184 0.324943 CCAGTAGTTGTGGGGAGTGG 59.675 60.000 0.00 0.00 0.00 4.00
2864 3185 1.056660 ACCAGTAGTTGTGGGGAGTG 58.943 55.000 0.00 0.00 39.65 3.51
2865 3186 1.697982 GAACCAGTAGTTGTGGGGAGT 59.302 52.381 0.00 0.00 39.40 3.85
2866 3187 1.978580 AGAACCAGTAGTTGTGGGGAG 59.021 52.381 0.00 0.00 39.40 4.30
2867 3188 2.112279 AGAACCAGTAGTTGTGGGGA 57.888 50.000 0.00 0.00 39.40 4.81
2868 3189 4.360951 TTTAGAACCAGTAGTTGTGGGG 57.639 45.455 0.00 0.00 39.40 4.96
2869 3190 5.374071 ACTTTTAGAACCAGTAGTTGTGGG 58.626 41.667 0.00 0.00 39.40 4.61
2870 3191 6.987992 TGTACTTTTAGAACCAGTAGTTGTGG 59.012 38.462 0.00 0.00 39.40 4.17
2871 3192 8.495949 CATGTACTTTTAGAACCAGTAGTTGTG 58.504 37.037 0.00 0.00 39.40 3.33
2872 3193 8.426489 TCATGTACTTTTAGAACCAGTAGTTGT 58.574 33.333 0.00 0.00 39.40 3.32
2873 3194 8.709646 GTCATGTACTTTTAGAACCAGTAGTTG 58.290 37.037 0.00 0.00 39.40 3.16
2874 3195 8.648693 AGTCATGTACTTTTAGAACCAGTAGTT 58.351 33.333 0.00 0.00 36.76 2.24
2875 3196 8.191534 AGTCATGTACTTTTAGAACCAGTAGT 57.808 34.615 0.00 0.00 33.35 2.73
2878 3199 7.603024 GCTAAGTCATGTACTTTTAGAACCAGT 59.397 37.037 13.40 0.00 46.61 4.00
2879 3200 7.819900 AGCTAAGTCATGTACTTTTAGAACCAG 59.180 37.037 13.40 6.10 46.61 4.00
2880 3201 7.676947 AGCTAAGTCATGTACTTTTAGAACCA 58.323 34.615 13.40 0.00 46.61 3.67
2881 3202 9.303537 CTAGCTAAGTCATGTACTTTTAGAACC 57.696 37.037 13.40 0.00 46.61 3.62
2882 3203 9.857957 ACTAGCTAAGTCATGTACTTTTAGAAC 57.142 33.333 13.40 0.00 46.61 3.01
2887 3208 9.780186 AGAAAACTAGCTAAGTCATGTACTTTT 57.220 29.630 13.40 2.99 46.61 2.27
2888 3209 9.780186 AAGAAAACTAGCTAAGTCATGTACTTT 57.220 29.630 13.40 2.52 46.61 2.66
2890 3211 9.425577 GAAAGAAAACTAGCTAAGTCATGTACT 57.574 33.333 0.00 0.00 37.50 2.73
2891 3212 8.373992 CGAAAGAAAACTAGCTAAGTCATGTAC 58.626 37.037 0.00 0.00 37.50 2.90
2892 3213 8.301720 TCGAAAGAAAACTAGCTAAGTCATGTA 58.698 33.333 0.00 0.00 35.15 2.29
2893 3214 7.152645 TCGAAAGAAAACTAGCTAAGTCATGT 58.847 34.615 0.00 0.00 35.15 3.21
2894 3215 7.582435 TCGAAAGAAAACTAGCTAAGTCATG 57.418 36.000 0.00 0.00 35.15 3.07
2923 3244 9.570488 GTCGTTGATTGAGTAATACTAGTCTTT 57.430 33.333 0.00 0.00 0.00 2.52
2924 3245 8.737175 TGTCGTTGATTGAGTAATACTAGTCTT 58.263 33.333 0.00 0.00 0.00 3.01
2925 3246 8.182881 GTGTCGTTGATTGAGTAATACTAGTCT 58.817 37.037 0.00 0.00 0.00 3.24
2926 3247 7.966753 TGTGTCGTTGATTGAGTAATACTAGTC 59.033 37.037 0.00 0.00 0.00 2.59
2927 3248 7.823665 TGTGTCGTTGATTGAGTAATACTAGT 58.176 34.615 0.00 0.00 0.00 2.57
2928 3249 8.746751 CATGTGTCGTTGATTGAGTAATACTAG 58.253 37.037 0.00 0.00 0.00 2.57
2929 3250 7.222031 GCATGTGTCGTTGATTGAGTAATACTA 59.778 37.037 0.00 0.00 0.00 1.82
2930 3251 6.036083 GCATGTGTCGTTGATTGAGTAATACT 59.964 38.462 0.00 0.00 0.00 2.12
2931 3252 6.183360 TGCATGTGTCGTTGATTGAGTAATAC 60.183 38.462 0.00 0.00 0.00 1.89
2932 3253 5.872070 TGCATGTGTCGTTGATTGAGTAATA 59.128 36.000 0.00 0.00 0.00 0.98
2933 3254 4.694982 TGCATGTGTCGTTGATTGAGTAAT 59.305 37.500 0.00 0.00 0.00 1.89
2934 3255 4.061596 TGCATGTGTCGTTGATTGAGTAA 58.938 39.130 0.00 0.00 0.00 2.24
2935 3256 3.431912 GTGCATGTGTCGTTGATTGAGTA 59.568 43.478 0.00 0.00 0.00 2.59
2936 3257 2.224079 GTGCATGTGTCGTTGATTGAGT 59.776 45.455 0.00 0.00 0.00 3.41
2937 3258 2.223845 TGTGCATGTGTCGTTGATTGAG 59.776 45.455 0.00 0.00 0.00 3.02
2938 3259 2.216898 TGTGCATGTGTCGTTGATTGA 58.783 42.857 0.00 0.00 0.00 2.57
2939 3260 2.577450 CTGTGCATGTGTCGTTGATTG 58.423 47.619 0.00 0.00 0.00 2.67
2940 3261 1.069022 GCTGTGCATGTGTCGTTGATT 60.069 47.619 0.00 0.00 0.00 2.57
2941 3262 0.518636 GCTGTGCATGTGTCGTTGAT 59.481 50.000 0.00 0.00 0.00 2.57
2942 3263 0.532640 AGCTGTGCATGTGTCGTTGA 60.533 50.000 0.00 0.00 0.00 3.18
2943 3264 0.110509 GAGCTGTGCATGTGTCGTTG 60.111 55.000 0.00 0.00 0.00 4.10
2944 3265 1.230635 GGAGCTGTGCATGTGTCGTT 61.231 55.000 0.00 0.00 0.00 3.85
2945 3266 1.669115 GGAGCTGTGCATGTGTCGT 60.669 57.895 0.00 0.00 0.00 4.34
2946 3267 1.357258 GAGGAGCTGTGCATGTGTCG 61.357 60.000 0.00 0.00 0.00 4.35
2947 3268 0.036577 AGAGGAGCTGTGCATGTGTC 60.037 55.000 0.00 0.00 0.00 3.67
2948 3269 0.399454 AAGAGGAGCTGTGCATGTGT 59.601 50.000 0.00 0.00 0.00 3.72
2949 3270 1.531423 AAAGAGGAGCTGTGCATGTG 58.469 50.000 0.00 0.00 0.00 3.21
2950 3271 2.283145 AAAAGAGGAGCTGTGCATGT 57.717 45.000 0.00 0.00 0.00 3.21
2951 3272 2.413765 CGAAAAAGAGGAGCTGTGCATG 60.414 50.000 0.00 0.00 0.00 4.06
2952 3273 1.808945 CGAAAAAGAGGAGCTGTGCAT 59.191 47.619 0.00 0.00 0.00 3.96
2953 3274 1.229428 CGAAAAAGAGGAGCTGTGCA 58.771 50.000 0.00 0.00 0.00 4.57
2954 3275 0.110010 GCGAAAAAGAGGAGCTGTGC 60.110 55.000 0.00 0.00 0.00 4.57
2955 3276 0.164647 CGCGAAAAAGAGGAGCTGTG 59.835 55.000 0.00 0.00 0.00 3.66
2956 3277 0.951040 CCGCGAAAAAGAGGAGCTGT 60.951 55.000 8.23 0.00 32.51 4.40
2957 3278 1.639298 CCCGCGAAAAAGAGGAGCTG 61.639 60.000 8.23 0.00 32.51 4.24
2958 3279 1.376037 CCCGCGAAAAAGAGGAGCT 60.376 57.895 8.23 0.00 32.51 4.09
2959 3280 2.399356 CCCCGCGAAAAAGAGGAGC 61.399 63.158 8.23 0.00 32.51 4.70
2960 3281 0.248289 TACCCCGCGAAAAAGAGGAG 59.752 55.000 8.23 0.00 32.51 3.69
2961 3282 0.686224 TTACCCCGCGAAAAAGAGGA 59.314 50.000 8.23 0.00 32.51 3.71
2962 3283 1.525941 TTTACCCCGCGAAAAAGAGG 58.474 50.000 8.23 0.00 0.00 3.69
2963 3284 2.667448 GCTTTTACCCCGCGAAAAAGAG 60.667 50.000 25.81 14.17 40.87 2.85
2964 3285 1.267533 GCTTTTACCCCGCGAAAAAGA 59.732 47.619 25.81 6.75 40.87 2.52
2965 3286 1.001158 TGCTTTTACCCCGCGAAAAAG 60.001 47.619 21.19 21.19 41.17 2.27
2966 3287 1.030457 TGCTTTTACCCCGCGAAAAA 58.970 45.000 8.23 7.98 0.00 1.94
2967 3288 1.030457 TTGCTTTTACCCCGCGAAAA 58.970 45.000 8.23 5.38 0.00 2.29
2968 3289 1.249407 ATTGCTTTTACCCCGCGAAA 58.751 45.000 8.23 0.00 0.00 3.46
2969 3290 1.200484 GAATTGCTTTTACCCCGCGAA 59.800 47.619 8.23 0.00 0.00 4.70
2970 3291 0.806241 GAATTGCTTTTACCCCGCGA 59.194 50.000 8.23 0.00 0.00 5.87
2971 3292 0.523966 TGAATTGCTTTTACCCCGCG 59.476 50.000 0.00 0.00 0.00 6.46
2972 3293 2.959507 ATGAATTGCTTTTACCCCGC 57.040 45.000 0.00 0.00 0.00 6.13
2973 3294 5.576447 AGTAATGAATTGCTTTTACCCCG 57.424 39.130 0.00 0.00 27.85 5.73
2974 3295 6.930731 TGAAGTAATGAATTGCTTTTACCCC 58.069 36.000 7.64 0.00 41.68 4.95
2975 3296 7.602753 ACTGAAGTAATGAATTGCTTTTACCC 58.397 34.615 7.64 0.00 41.68 3.69
3018 3339 9.887629 AGGAGATTAGCACTATCATTATGAATG 57.112 33.333 0.00 0.00 40.28 2.67
3022 3343 9.814899 CCTTAGGAGATTAGCACTATCATTATG 57.185 37.037 0.00 0.00 0.00 1.90
3023 3344 9.775539 TCCTTAGGAGATTAGCACTATCATTAT 57.224 33.333 0.00 0.00 0.00 1.28
3024 3345 9.026121 GTCCTTAGGAGATTAGCACTATCATTA 57.974 37.037 0.00 0.00 29.39 1.90
3025 3346 7.732593 AGTCCTTAGGAGATTAGCACTATCATT 59.267 37.037 0.00 0.00 29.39 2.57
3026 3347 7.245292 AGTCCTTAGGAGATTAGCACTATCAT 58.755 38.462 0.00 0.00 29.39 2.45
3027 3348 6.615617 AGTCCTTAGGAGATTAGCACTATCA 58.384 40.000 0.00 0.00 29.39 2.15
3028 3349 8.817092 ATAGTCCTTAGGAGATTAGCACTATC 57.183 38.462 0.00 0.00 29.39 2.08
3029 3350 9.608718 AAATAGTCCTTAGGAGATTAGCACTAT 57.391 33.333 0.00 0.17 29.39 2.12
3030 3351 8.861086 CAAATAGTCCTTAGGAGATTAGCACTA 58.139 37.037 0.00 0.00 29.39 2.74
3031 3352 7.688083 GCAAATAGTCCTTAGGAGATTAGCACT 60.688 40.741 0.00 0.00 29.39 4.40
3032 3353 6.425417 GCAAATAGTCCTTAGGAGATTAGCAC 59.575 42.308 0.00 0.00 29.39 4.40
3033 3354 6.327626 AGCAAATAGTCCTTAGGAGATTAGCA 59.672 38.462 0.00 0.00 29.39 3.49
3034 3355 6.764379 AGCAAATAGTCCTTAGGAGATTAGC 58.236 40.000 0.00 2.33 29.39 3.09
3035 3356 9.699703 GTTAGCAAATAGTCCTTAGGAGATTAG 57.300 37.037 0.00 0.00 29.39 1.73
3036 3357 8.648693 GGTTAGCAAATAGTCCTTAGGAGATTA 58.351 37.037 0.00 0.00 29.39 1.75
3037 3358 7.127339 TGGTTAGCAAATAGTCCTTAGGAGATT 59.873 37.037 0.00 1.67 29.39 2.40
3038 3359 6.615726 TGGTTAGCAAATAGTCCTTAGGAGAT 59.384 38.462 0.00 0.00 29.39 2.75
3039 3360 5.962031 TGGTTAGCAAATAGTCCTTAGGAGA 59.038 40.000 0.00 0.00 29.39 3.71
3040 3361 6.235231 TGGTTAGCAAATAGTCCTTAGGAG 57.765 41.667 0.00 0.00 29.39 3.69
3041 3362 6.013206 TGTTGGTTAGCAAATAGTCCTTAGGA 60.013 38.462 0.00 0.00 0.00 2.94
3042 3363 6.177610 TGTTGGTTAGCAAATAGTCCTTAGG 58.822 40.000 0.00 0.00 0.00 2.69
3043 3364 7.681939 TTGTTGGTTAGCAAATAGTCCTTAG 57.318 36.000 0.00 0.00 0.00 2.18
3044 3365 7.362574 GCATTGTTGGTTAGCAAATAGTCCTTA 60.363 37.037 0.00 0.00 30.64 2.69
3045 3366 6.572314 GCATTGTTGGTTAGCAAATAGTCCTT 60.572 38.462 0.00 0.00 30.64 3.36
3046 3367 5.105756 GCATTGTTGGTTAGCAAATAGTCCT 60.106 40.000 0.00 0.00 30.64 3.85
3047 3368 5.102313 GCATTGTTGGTTAGCAAATAGTCC 58.898 41.667 0.00 0.00 30.64 3.85
3048 3369 5.102313 GGCATTGTTGGTTAGCAAATAGTC 58.898 41.667 0.00 0.00 30.64 2.59
3049 3370 4.380444 CGGCATTGTTGGTTAGCAAATAGT 60.380 41.667 0.00 0.00 30.64 2.12
3050 3371 4.104776 CGGCATTGTTGGTTAGCAAATAG 58.895 43.478 0.00 0.00 30.64 1.73
3051 3372 3.508012 ACGGCATTGTTGGTTAGCAAATA 59.492 39.130 0.00 0.00 30.64 1.40
3052 3373 2.298729 ACGGCATTGTTGGTTAGCAAAT 59.701 40.909 0.00 0.00 30.64 2.32
3053 3374 1.683917 ACGGCATTGTTGGTTAGCAAA 59.316 42.857 0.00 0.00 30.64 3.68
3054 3375 1.323412 ACGGCATTGTTGGTTAGCAA 58.677 45.000 0.00 0.00 0.00 3.91
3055 3376 1.323412 AACGGCATTGTTGGTTAGCA 58.677 45.000 0.00 0.00 0.00 3.49
3056 3377 2.432206 AAACGGCATTGTTGGTTAGC 57.568 45.000 0.00 0.00 31.10 3.09
3079 3400 9.667866 AGGTGGTCCTTGTGAACAAAAATTCAC 62.668 40.741 10.91 10.91 43.89 3.18
3080 3401 5.415221 GTGGTCCTTGTGAACAAAAATTCA 58.585 37.500 0.00 0.00 43.89 2.57
3081 3402 4.808895 GGTGGTCCTTGTGAACAAAAATTC 59.191 41.667 0.00 0.00 43.89 2.17
3082 3403 4.469586 AGGTGGTCCTTGTGAACAAAAATT 59.530 37.500 0.00 0.00 43.89 1.82
3083 3404 4.030216 AGGTGGTCCTTGTGAACAAAAAT 58.970 39.130 0.00 0.00 43.89 1.82
3084 3405 3.194542 CAGGTGGTCCTTGTGAACAAAAA 59.805 43.478 0.00 0.00 43.89 1.94
3085 3406 2.757868 CAGGTGGTCCTTGTGAACAAAA 59.242 45.455 0.00 0.00 43.89 2.44
3086 3407 2.374184 CAGGTGGTCCTTGTGAACAAA 58.626 47.619 0.00 0.00 43.89 2.83
3087 3408 2.021723 GCAGGTGGTCCTTGTGAACAA 61.022 52.381 0.00 0.00 43.89 2.83
3088 3409 0.465460 GCAGGTGGTCCTTGTGAACA 60.465 55.000 0.00 0.00 43.07 3.18
3089 3410 1.172812 GGCAGGTGGTCCTTGTGAAC 61.173 60.000 0.00 0.00 43.07 3.18
3090 3411 1.150536 GGCAGGTGGTCCTTGTGAA 59.849 57.895 0.00 0.00 43.07 3.18
3091 3412 2.836154 GGCAGGTGGTCCTTGTGA 59.164 61.111 0.00 0.00 43.07 3.58
3092 3413 2.669569 CGGCAGGTGGTCCTTGTG 60.670 66.667 0.00 0.00 43.07 3.33
3093 3414 2.448582 TTCGGCAGGTGGTCCTTGT 61.449 57.895 0.00 0.00 43.07 3.16
3094 3415 1.966451 GTTCGGCAGGTGGTCCTTG 60.966 63.158 0.00 0.00 43.07 3.61
3095 3416 2.430367 GTTCGGCAGGTGGTCCTT 59.570 61.111 0.00 0.00 43.07 3.36
3096 3417 4.003788 CGTTCGGCAGGTGGTCCT 62.004 66.667 0.00 0.00 46.37 3.85
3106 3427 0.237235 TTCTGTCAATTGCGTTCGGC 59.763 50.000 0.00 0.00 43.96 5.54
3107 3428 2.679355 TTTCTGTCAATTGCGTTCGG 57.321 45.000 0.00 0.00 0.00 4.30
3108 3429 3.659444 GTCTTTTCTGTCAATTGCGTTCG 59.341 43.478 0.00 0.00 0.00 3.95
3109 3430 3.975035 GGTCTTTTCTGTCAATTGCGTTC 59.025 43.478 0.00 0.00 0.00 3.95
3110 3431 3.380004 TGGTCTTTTCTGTCAATTGCGTT 59.620 39.130 0.00 0.00 0.00 4.84
3111 3432 2.948979 TGGTCTTTTCTGTCAATTGCGT 59.051 40.909 0.00 0.00 0.00 5.24
3112 3433 3.300009 GTGGTCTTTTCTGTCAATTGCG 58.700 45.455 0.00 0.00 0.00 4.85
3113 3434 3.552890 GGGTGGTCTTTTCTGTCAATTGC 60.553 47.826 0.00 0.00 0.00 3.56
3114 3435 3.636300 TGGGTGGTCTTTTCTGTCAATTG 59.364 43.478 0.00 0.00 0.00 2.32
3115 3436 3.909732 TGGGTGGTCTTTTCTGTCAATT 58.090 40.909 0.00 0.00 0.00 2.32
3116 3437 3.593442 TGGGTGGTCTTTTCTGTCAAT 57.407 42.857 0.00 0.00 0.00 2.57
3117 3438 3.117701 TCATGGGTGGTCTTTTCTGTCAA 60.118 43.478 0.00 0.00 0.00 3.18
3118 3439 2.441375 TCATGGGTGGTCTTTTCTGTCA 59.559 45.455 0.00 0.00 0.00 3.58
3119 3440 3.140325 TCATGGGTGGTCTTTTCTGTC 57.860 47.619 0.00 0.00 0.00 3.51
3120 3441 3.814504 ATCATGGGTGGTCTTTTCTGT 57.185 42.857 0.00 0.00 0.00 3.41
3121 3442 4.081406 TGAATCATGGGTGGTCTTTTCTG 58.919 43.478 0.00 0.00 0.00 3.02
3122 3443 4.082125 GTGAATCATGGGTGGTCTTTTCT 58.918 43.478 0.00 0.00 0.00 2.52
3123 3444 3.826157 TGTGAATCATGGGTGGTCTTTTC 59.174 43.478 0.00 0.00 0.00 2.29
3124 3445 3.843422 TGTGAATCATGGGTGGTCTTTT 58.157 40.909 0.00 0.00 0.00 2.27
3125 3446 3.524095 TGTGAATCATGGGTGGTCTTT 57.476 42.857 0.00 0.00 0.00 2.52
3126 3447 3.744940 ATGTGAATCATGGGTGGTCTT 57.255 42.857 0.00 0.00 35.19 3.01
3127 3448 3.359033 CAATGTGAATCATGGGTGGTCT 58.641 45.455 0.00 0.00 36.81 3.85
3128 3449 2.428171 CCAATGTGAATCATGGGTGGTC 59.572 50.000 0.00 0.00 41.53 4.02
3129 3450 2.459644 CCAATGTGAATCATGGGTGGT 58.540 47.619 0.00 0.00 41.53 4.16
3130 3451 1.137479 GCCAATGTGAATCATGGGTGG 59.863 52.381 3.82 2.94 46.66 4.61
3131 3452 1.826096 TGCCAATGTGAATCATGGGTG 59.174 47.619 3.82 0.00 46.66 4.61
3132 3453 2.234896 TGCCAATGTGAATCATGGGT 57.765 45.000 3.82 0.00 46.66 4.51
3134 3455 3.368539 CGTTTTGCCAATGTGAATCATGG 59.631 43.478 0.00 0.00 36.81 3.66
3135 3456 3.368539 CCGTTTTGCCAATGTGAATCATG 59.631 43.478 0.00 0.00 36.81 3.07
3136 3457 3.257873 TCCGTTTTGCCAATGTGAATCAT 59.742 39.130 0.00 0.00 38.57 2.45
3137 3458 2.625314 TCCGTTTTGCCAATGTGAATCA 59.375 40.909 0.00 0.00 0.00 2.57
3138 3459 2.986479 GTCCGTTTTGCCAATGTGAATC 59.014 45.455 0.00 0.00 0.00 2.52
3139 3460 2.288763 GGTCCGTTTTGCCAATGTGAAT 60.289 45.455 0.00 0.00 0.00 2.57
3140 3461 1.067821 GGTCCGTTTTGCCAATGTGAA 59.932 47.619 0.00 0.00 0.00 3.18
3141 3462 0.671251 GGTCCGTTTTGCCAATGTGA 59.329 50.000 0.00 0.00 0.00 3.58
3142 3463 0.387202 TGGTCCGTTTTGCCAATGTG 59.613 50.000 0.00 0.00 0.00 3.21
3143 3464 0.673437 CTGGTCCGTTTTGCCAATGT 59.327 50.000 0.00 0.00 0.00 2.71
3144 3465 0.667184 GCTGGTCCGTTTTGCCAATG 60.667 55.000 0.00 0.00 0.00 2.82
3145 3466 0.827507 AGCTGGTCCGTTTTGCCAAT 60.828 50.000 0.00 0.00 0.00 3.16
3146 3467 1.454847 AGCTGGTCCGTTTTGCCAA 60.455 52.632 0.00 0.00 0.00 4.52
3147 3468 2.192861 CAGCTGGTCCGTTTTGCCA 61.193 57.895 5.57 0.00 0.00 4.92
3148 3469 1.856265 CTCAGCTGGTCCGTTTTGCC 61.856 60.000 15.13 0.00 0.00 4.52
3149 3470 1.166531 ACTCAGCTGGTCCGTTTTGC 61.167 55.000 15.13 0.00 0.00 3.68
3150 3471 1.002468 CAACTCAGCTGGTCCGTTTTG 60.002 52.381 15.13 3.52 0.00 2.44
3151 3472 1.308998 CAACTCAGCTGGTCCGTTTT 58.691 50.000 15.13 0.00 0.00 2.43
3152 3473 0.180406 ACAACTCAGCTGGTCCGTTT 59.820 50.000 15.13 0.00 0.00 3.60
3153 3474 0.532862 CACAACTCAGCTGGTCCGTT 60.533 55.000 15.13 9.52 0.00 4.44
3154 3475 1.069765 CACAACTCAGCTGGTCCGT 59.930 57.895 15.13 8.82 0.00 4.69
3155 3476 1.669115 CCACAACTCAGCTGGTCCG 60.669 63.158 15.13 8.24 0.00 4.79
3156 3477 1.968540 GCCACAACTCAGCTGGTCC 60.969 63.158 15.13 0.00 0.00 4.46
3157 3478 2.320587 CGCCACAACTCAGCTGGTC 61.321 63.158 15.13 0.00 0.00 4.02
3158 3479 2.281070 CGCCACAACTCAGCTGGT 60.281 61.111 15.13 7.99 0.00 4.00
3159 3480 3.052082 CCGCCACAACTCAGCTGG 61.052 66.667 15.13 7.28 0.00 4.85
3160 3481 3.730761 GCCGCCACAACTCAGCTG 61.731 66.667 7.63 7.63 0.00 4.24
3161 3482 4.254709 TGCCGCCACAACTCAGCT 62.255 61.111 0.00 0.00 0.00 4.24
3162 3483 3.730761 CTGCCGCCACAACTCAGC 61.731 66.667 0.00 0.00 0.00 4.26
3163 3484 3.052082 CCTGCCGCCACAACTCAG 61.052 66.667 0.00 0.00 0.00 3.35
3164 3485 3.872603 ACCTGCCGCCACAACTCA 61.873 61.111 0.00 0.00 0.00 3.41
3165 3486 3.357079 CACCTGCCGCCACAACTC 61.357 66.667 0.00 0.00 0.00 3.01
3177 3498 4.994471 TGTCAGCTGGCGCACCTG 62.994 66.667 14.71 12.25 39.10 4.00
3178 3499 4.996434 GTGTCAGCTGGCGCACCT 62.996 66.667 26.29 0.00 39.10 4.00
3185 3506 4.969196 ACGCCACGTGTCAGCTGG 62.969 66.667 15.13 0.00 39.18 4.85
3186 3507 3.406361 GACGCCACGTGTCAGCTG 61.406 66.667 15.65 7.63 41.37 4.24
3187 3508 3.606662 AGACGCCACGTGTCAGCT 61.607 61.111 15.65 3.63 44.42 4.24
3188 3509 3.406361 CAGACGCCACGTGTCAGC 61.406 66.667 15.65 10.01 44.42 4.26
3189 3510 3.406361 GCAGACGCCACGTGTCAG 61.406 66.667 15.65 7.67 44.42 3.51
3216 3537 3.785859 TAGCCCCTGCAGCCTTCG 61.786 66.667 8.66 0.00 41.13 3.79
3217 3538 2.124529 GTAGCCCCTGCAGCCTTC 60.125 66.667 8.66 0.00 41.13 3.46
3218 3539 3.732849 GGTAGCCCCTGCAGCCTT 61.733 66.667 8.66 0.00 41.13 4.35
3257 3578 2.763215 GATTCCTGTGGTGGGCCA 59.237 61.111 0.00 0.00 43.73 5.36
3258 3579 2.438434 CGATTCCTGTGGTGGGCC 60.438 66.667 0.00 0.00 0.00 5.80
3259 3580 2.438434 CCGATTCCTGTGGTGGGC 60.438 66.667 0.00 0.00 0.00 5.36
3260 3581 3.077907 ACCGATTCCTGTGGTGGG 58.922 61.111 0.00 0.00 33.91 4.61
3263 3584 0.320421 CGTTCACCGATTCCTGTGGT 60.320 55.000 0.00 0.00 39.56 4.16
3264 3585 1.635663 GCGTTCACCGATTCCTGTGG 61.636 60.000 0.00 0.00 39.56 4.17
3265 3586 0.948623 TGCGTTCACCGATTCCTGTG 60.949 55.000 0.00 0.00 39.56 3.66
3266 3587 0.670546 CTGCGTTCACCGATTCCTGT 60.671 55.000 0.00 0.00 39.56 4.00
3267 3588 1.970917 GCTGCGTTCACCGATTCCTG 61.971 60.000 0.00 0.00 39.56 3.86
3268 3589 1.741770 GCTGCGTTCACCGATTCCT 60.742 57.895 0.00 0.00 39.56 3.36
3269 3590 1.741770 AGCTGCGTTCACCGATTCC 60.742 57.895 0.00 0.00 39.56 3.01
3270 3591 1.014044 TCAGCTGCGTTCACCGATTC 61.014 55.000 9.47 0.00 39.56 2.52
3271 3592 0.391661 ATCAGCTGCGTTCACCGATT 60.392 50.000 9.47 0.00 39.56 3.34
3272 3593 1.086067 CATCAGCTGCGTTCACCGAT 61.086 55.000 9.47 0.00 39.56 4.18
3273 3594 1.737735 CATCAGCTGCGTTCACCGA 60.738 57.895 9.47 0.00 39.56 4.69
3274 3595 2.780643 CATCAGCTGCGTTCACCG 59.219 61.111 9.47 0.00 40.40 4.94
3275 3596 2.482374 GCATCAGCTGCGTTCACC 59.518 61.111 9.47 0.00 41.97 4.02
3284 3605 4.435436 TTCCGTCGCGCATCAGCT 62.435 61.111 8.75 0.00 39.10 4.24
3285 3606 4.210304 GTTCCGTCGCGCATCAGC 62.210 66.667 8.75 0.00 37.42 4.26
3286 3607 3.902063 CGTTCCGTCGCGCATCAG 61.902 66.667 8.75 0.00 0.00 2.90
3293 3614 4.849329 ATCGCTCCGTTCCGTCGC 62.849 66.667 0.00 0.00 0.00 5.19
3294 3615 2.949678 CATCGCTCCGTTCCGTCG 60.950 66.667 0.00 0.00 0.00 5.12
3295 3616 2.582498 CCATCGCTCCGTTCCGTC 60.582 66.667 0.00 0.00 0.00 4.79
3296 3617 4.143333 CCCATCGCTCCGTTCCGT 62.143 66.667 0.00 0.00 0.00 4.69
3298 3619 4.467084 TGCCCATCGCTCCGTTCC 62.467 66.667 0.00 0.00 38.78 3.62
3299 3620 2.650813 ATCTGCCCATCGCTCCGTTC 62.651 60.000 0.00 0.00 38.78 3.95
3300 3621 2.735772 ATCTGCCCATCGCTCCGTT 61.736 57.895 0.00 0.00 38.78 4.44
3301 3622 3.157252 ATCTGCCCATCGCTCCGT 61.157 61.111 0.00 0.00 38.78 4.69
3302 3623 2.664185 CATCTGCCCATCGCTCCG 60.664 66.667 0.00 0.00 38.78 4.63
3303 3624 2.281345 CCATCTGCCCATCGCTCC 60.281 66.667 0.00 0.00 38.78 4.70
3304 3625 2.281345 CCCATCTGCCCATCGCTC 60.281 66.667 0.00 0.00 38.78 5.03
3305 3626 4.575973 GCCCATCTGCCCATCGCT 62.576 66.667 0.00 0.00 38.78 4.93
3336 3657 3.112075 CAGTAGTGCCGCCACACG 61.112 66.667 0.00 0.00 45.45 4.49
3337 3658 3.423154 GCAGTAGTGCCGCCACAC 61.423 66.667 11.74 0.00 44.72 3.82
3360 3681 6.408869 CCCTAAATACTGTCGACCCTAAAAA 58.591 40.000 14.12 0.00 0.00 1.94
3361 3682 5.627503 GCCCTAAATACTGTCGACCCTAAAA 60.628 44.000 14.12 0.00 0.00 1.52
3362 3683 4.141869 GCCCTAAATACTGTCGACCCTAAA 60.142 45.833 14.12 0.00 0.00 1.85
3363 3684 3.385755 GCCCTAAATACTGTCGACCCTAA 59.614 47.826 14.12 0.00 0.00 2.69
3364 3685 2.961062 GCCCTAAATACTGTCGACCCTA 59.039 50.000 14.12 2.24 0.00 3.53
3365 3686 1.761198 GCCCTAAATACTGTCGACCCT 59.239 52.381 14.12 0.00 0.00 4.34
3366 3687 1.761198 AGCCCTAAATACTGTCGACCC 59.239 52.381 14.12 0.00 0.00 4.46
3367 3688 2.483188 CCAGCCCTAAATACTGTCGACC 60.483 54.545 14.12 0.00 0.00 4.79
3368 3689 2.822764 CCAGCCCTAAATACTGTCGAC 58.177 52.381 9.11 9.11 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.