Multiple sequence alignment - TraesCS3B01G279800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G279800 chr3B 100.000 3587 0 0 440 4026 449447099 449443513 0.000000e+00 6625.0
1 TraesCS3B01G279800 chr3B 100.000 73 0 0 1 73 449447538 449447466 7.020000e-28 135.0
2 TraesCS3B01G279800 chr3D 94.704 2417 105 10 727 3122 350877234 350874820 0.000000e+00 3733.0
3 TraesCS3B01G279800 chr3D 94.118 102 6 0 3915 4016 341462187 341462288 5.390000e-34 156.0
4 TraesCS3B01G279800 chr3D 97.015 67 1 1 3227 3293 350873579 350873514 1.180000e-20 111.0
5 TraesCS3B01G279800 chr3D 95.312 64 2 1 3147 3209 350873627 350873564 2.560000e-17 100.0
6 TraesCS3B01G279800 chr3A 95.153 2352 100 9 727 3068 468733607 468731260 0.000000e+00 3699.0
7 TraesCS3B01G279800 chr2A 87.993 558 62 2 3314 3866 73547011 73547568 0.000000e+00 654.0
8 TraesCS3B01G279800 chr1D 87.857 560 60 5 3317 3871 10600969 10600413 0.000000e+00 651.0
9 TraesCS3B01G279800 chr1D 86.851 578 68 5 3311 3882 223773915 223774490 1.220000e-179 640.0
10 TraesCS3B01G279800 chr1D 95.327 107 4 1 3910 4016 482937022 482937127 6.920000e-38 169.0
11 TraesCS3B01G279800 chr1D 94.545 110 5 1 3907 4016 491942419 491942311 6.920000e-38 169.0
12 TraesCS3B01G279800 chr1D 93.519 108 4 2 3909 4016 402150565 402150461 1.500000e-34 158.0
13 TraesCS3B01G279800 chr1A 87.611 565 63 4 3314 3872 287381812 287382375 0.000000e+00 649.0
14 TraesCS3B01G279800 chr1A 96.078 102 4 0 3915 4016 339492695 339492796 2.490000e-37 167.0
15 TraesCS3B01G279800 chr6D 86.988 561 68 2 3318 3873 122379218 122379778 9.500000e-176 627.0
16 TraesCS3B01G279800 chr6D 94.340 106 5 1 3911 4016 110166690 110166794 1.160000e-35 161.0
17 TraesCS3B01G279800 chr2B 87.661 543 60 4 3305 3841 569123580 569123039 3.420000e-175 625.0
18 TraesCS3B01G279800 chr2B 86.301 73 8 1 1 73 800080486 800080416 1.200000e-10 78.7
19 TraesCS3B01G279800 chr1B 86.491 570 69 5 3303 3866 323328255 323328822 1.590000e-173 619.0
20 TraesCS3B01G279800 chr1B 86.467 569 67 8 3306 3868 57776040 57775476 2.060000e-172 616.0
21 TraesCS3B01G279800 chr1B 92.241 116 8 1 3902 4016 628674176 628674291 3.220000e-36 163.0
22 TraesCS3B01G279800 chr5D 85.813 578 73 6 3303 3873 165615655 165616230 4.450000e-169 604.0
23 TraesCS3B01G279800 chr5D 96.078 102 4 0 3915 4016 509960803 509960702 2.490000e-37 167.0
24 TraesCS3B01G279800 chr2D 89.256 121 12 1 3897 4016 115989522 115989642 2.510000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G279800 chr3B 449443513 449447538 4025 True 3380.000000 6625 100.000 1 4026 2 chr3B.!!$R1 4025
1 TraesCS3B01G279800 chr3D 350873514 350877234 3720 True 1314.666667 3733 95.677 727 3293 3 chr3D.!!$R1 2566
2 TraesCS3B01G279800 chr3A 468731260 468733607 2347 True 3699.000000 3699 95.153 727 3068 1 chr3A.!!$R1 2341
3 TraesCS3B01G279800 chr2A 73547011 73547568 557 False 654.000000 654 87.993 3314 3866 1 chr2A.!!$F1 552
4 TraesCS3B01G279800 chr1D 10600413 10600969 556 True 651.000000 651 87.857 3317 3871 1 chr1D.!!$R1 554
5 TraesCS3B01G279800 chr1D 223773915 223774490 575 False 640.000000 640 86.851 3311 3882 1 chr1D.!!$F1 571
6 TraesCS3B01G279800 chr1A 287381812 287382375 563 False 649.000000 649 87.611 3314 3872 1 chr1A.!!$F1 558
7 TraesCS3B01G279800 chr6D 122379218 122379778 560 False 627.000000 627 86.988 3318 3873 1 chr6D.!!$F2 555
8 TraesCS3B01G279800 chr2B 569123039 569123580 541 True 625.000000 625 87.661 3305 3841 1 chr2B.!!$R1 536
9 TraesCS3B01G279800 chr1B 323328255 323328822 567 False 619.000000 619 86.491 3303 3866 1 chr1B.!!$F1 563
10 TraesCS3B01G279800 chr1B 57775476 57776040 564 True 616.000000 616 86.467 3306 3868 1 chr1B.!!$R1 562
11 TraesCS3B01G279800 chr5D 165615655 165616230 575 False 604.000000 604 85.813 3303 3873 1 chr5D.!!$F1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 794 0.179000 CCCCTCGAGGACAAATGAGG 59.821 60.0 33.39 18.19 46.10 3.86 F
1671 1678 0.036732 AGATTCCAAAGCACCTCGCA 59.963 50.0 0.00 0.00 46.13 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2618 2646 0.478072 TTCTGCAGGGCCTTTTCTGA 59.522 50.0 15.13 2.91 33.11 3.27 R
3166 4365 0.654160 CATACATGGAGTGCACGCAG 59.346 55.0 22.36 13.23 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.783621 GCATGTGGCAGGCGAGGA 62.784 66.667 0.00 0.00 43.97 3.71
32 33 2.513204 CATGTGGCAGGCGAGGAG 60.513 66.667 0.00 0.00 0.00 3.69
33 34 2.685017 ATGTGGCAGGCGAGGAGA 60.685 61.111 0.00 0.00 0.00 3.71
34 35 3.023949 ATGTGGCAGGCGAGGAGAC 62.024 63.158 0.00 0.00 0.00 3.36
35 36 4.803426 GTGGCAGGCGAGGAGACG 62.803 72.222 0.00 0.00 0.00 4.18
44 45 4.200283 GAGGAGACGGCAGCGGAG 62.200 72.222 7.02 0.00 0.00 4.63
67 68 4.817063 CGGCAGGCGCGTTGATTG 62.817 66.667 8.43 0.38 39.92 2.67
463 464 3.773630 CGTGCAACCGCCTACGTG 61.774 66.667 0.00 0.00 34.00 4.49
464 465 4.084888 GTGCAACCGCCTACGTGC 62.085 66.667 0.00 0.00 40.57 5.34
465 466 4.610714 TGCAACCGCCTACGTGCA 62.611 61.111 0.00 0.00 45.53 4.57
466 467 3.124921 GCAACCGCCTACGTGCAT 61.125 61.111 0.00 0.00 40.08 3.96
467 468 2.784596 CAACCGCCTACGTGCATG 59.215 61.111 3.82 3.82 37.70 4.06
468 469 3.124921 AACCGCCTACGTGCATGC 61.125 61.111 11.82 11.82 37.70 4.06
472 473 4.830765 GCCTACGTGCATGCGGGA 62.831 66.667 14.09 2.97 35.98 5.14
473 474 2.586079 CCTACGTGCATGCGGGAG 60.586 66.667 14.09 13.25 35.98 4.30
474 475 2.586079 CTACGTGCATGCGGGAGG 60.586 66.667 14.09 3.87 35.98 4.30
475 476 4.155733 TACGTGCATGCGGGAGGG 62.156 66.667 14.09 0.65 35.98 4.30
506 507 4.617875 GGGACGATGGTTGGACTG 57.382 61.111 0.00 0.00 0.00 3.51
507 508 1.980052 GGGACGATGGTTGGACTGA 59.020 57.895 0.00 0.00 0.00 3.41
508 509 0.541863 GGGACGATGGTTGGACTGAT 59.458 55.000 0.00 0.00 0.00 2.90
509 510 1.760613 GGGACGATGGTTGGACTGATA 59.239 52.381 0.00 0.00 0.00 2.15
510 511 2.169769 GGGACGATGGTTGGACTGATAA 59.830 50.000 0.00 0.00 0.00 1.75
511 512 3.458189 GGACGATGGTTGGACTGATAAG 58.542 50.000 0.00 0.00 0.00 1.73
512 513 3.118738 GGACGATGGTTGGACTGATAAGT 60.119 47.826 0.00 0.00 0.00 2.24
513 514 4.504858 GACGATGGTTGGACTGATAAGTT 58.495 43.478 0.00 0.00 0.00 2.66
514 515 4.906618 ACGATGGTTGGACTGATAAGTTT 58.093 39.130 0.00 0.00 0.00 2.66
515 516 5.313712 ACGATGGTTGGACTGATAAGTTTT 58.686 37.500 0.00 0.00 0.00 2.43
516 517 5.768164 ACGATGGTTGGACTGATAAGTTTTT 59.232 36.000 0.00 0.00 0.00 1.94
517 518 6.086222 CGATGGTTGGACTGATAAGTTTTTG 58.914 40.000 0.00 0.00 0.00 2.44
518 519 5.195001 TGGTTGGACTGATAAGTTTTTGC 57.805 39.130 0.00 0.00 0.00 3.68
519 520 4.226761 GGTTGGACTGATAAGTTTTTGCG 58.773 43.478 0.00 0.00 0.00 4.85
520 521 4.226761 GTTGGACTGATAAGTTTTTGCGG 58.773 43.478 0.00 0.00 0.00 5.69
521 522 2.817258 TGGACTGATAAGTTTTTGCGGG 59.183 45.455 0.00 0.00 0.00 6.13
522 523 2.415491 GGACTGATAAGTTTTTGCGGGC 60.415 50.000 0.00 0.00 0.00 6.13
523 524 1.199097 ACTGATAAGTTTTTGCGGGCG 59.801 47.619 0.00 0.00 0.00 6.13
524 525 0.523966 TGATAAGTTTTTGCGGGCGG 59.476 50.000 0.00 0.00 0.00 6.13
525 526 0.179148 GATAAGTTTTTGCGGGCGGG 60.179 55.000 0.00 0.00 0.00 6.13
526 527 2.220615 ATAAGTTTTTGCGGGCGGGC 62.221 55.000 0.00 0.00 0.00 6.13
548 549 3.053828 GGGACGACCGGACAAGAA 58.946 61.111 9.46 0.00 36.97 2.52
549 550 1.368579 GGGACGACCGGACAAGAAA 59.631 57.895 9.46 0.00 36.97 2.52
550 551 0.249996 GGGACGACCGGACAAGAAAA 60.250 55.000 9.46 0.00 36.97 2.29
551 552 1.585297 GGACGACCGGACAAGAAAAA 58.415 50.000 9.46 0.00 0.00 1.94
579 580 9.910511 CAATTTGTATTTGTATACGTACTCACC 57.089 33.333 0.00 0.00 39.62 4.02
580 581 9.880157 AATTTGTATTTGTATACGTACTCACCT 57.120 29.630 0.00 0.00 39.62 4.00
581 582 8.915871 TTTGTATTTGTATACGTACTCACCTC 57.084 34.615 0.00 0.00 39.62 3.85
582 583 6.718388 TGTATTTGTATACGTACTCACCTCG 58.282 40.000 0.00 0.00 39.62 4.63
583 584 4.621068 TTTGTATACGTACTCACCTCGG 57.379 45.455 0.00 0.00 0.00 4.63
584 585 2.564771 TGTATACGTACTCACCTCGGG 58.435 52.381 0.00 0.00 0.00 5.14
585 586 1.265365 GTATACGTACTCACCTCGGGC 59.735 57.143 0.00 0.00 0.00 6.13
586 587 1.442526 ATACGTACTCACCTCGGGCG 61.443 60.000 0.00 0.00 0.00 6.13
587 588 4.189188 CGTACTCACCTCGGGCGG 62.189 72.222 0.00 0.00 0.00 6.13
588 589 3.834799 GTACTCACCTCGGGCGGG 61.835 72.222 0.00 0.00 0.00 6.13
603 604 4.717313 GGGCGGGCGGTCTCTTTT 62.717 66.667 0.00 0.00 0.00 2.27
604 605 2.671963 GGCGGGCGGTCTCTTTTT 60.672 61.111 0.00 0.00 0.00 1.94
625 626 7.741554 TTTTTAAATTATACCCATGGTGCCT 57.258 32.000 11.73 0.00 36.19 4.75
626 627 7.741554 TTTTAAATTATACCCATGGTGCCTT 57.258 32.000 11.73 0.00 36.19 4.35
627 628 7.741554 TTTAAATTATACCCATGGTGCCTTT 57.258 32.000 11.73 5.40 36.19 3.11
628 629 5.869649 AAATTATACCCATGGTGCCTTTC 57.130 39.130 11.73 0.00 36.19 2.62
629 630 2.631160 TATACCCATGGTGCCTTTCG 57.369 50.000 11.73 0.00 36.19 3.46
630 631 0.623723 ATACCCATGGTGCCTTTCGT 59.376 50.000 11.73 0.88 36.19 3.85
631 632 0.402504 TACCCATGGTGCCTTTCGTT 59.597 50.000 11.73 0.00 36.19 3.85
632 633 0.402504 ACCCATGGTGCCTTTCGTTA 59.597 50.000 11.73 0.00 32.98 3.18
633 634 1.005450 ACCCATGGTGCCTTTCGTTAT 59.995 47.619 11.73 0.00 32.98 1.89
634 635 1.405105 CCCATGGTGCCTTTCGTTATG 59.595 52.381 11.73 0.00 0.00 1.90
635 636 2.364632 CCATGGTGCCTTTCGTTATGA 58.635 47.619 2.57 0.00 0.00 2.15
636 637 2.752354 CCATGGTGCCTTTCGTTATGAA 59.248 45.455 2.57 0.00 33.85 2.57
637 638 3.192422 CCATGGTGCCTTTCGTTATGAAA 59.808 43.478 2.57 0.00 44.19 2.69
652 653 9.820229 TTCGTTATGAAAGTGTATTGAACAATC 57.180 29.630 3.23 0.00 34.74 2.67
653 654 9.214957 TCGTTATGAAAGTGTATTGAACAATCT 57.785 29.630 3.23 0.00 40.63 2.40
654 655 9.825972 CGTTATGAAAGTGTATTGAACAATCTT 57.174 29.630 3.23 0.00 40.63 2.40
658 659 7.816640 TGAAAGTGTATTGAACAATCTTAGCC 58.183 34.615 3.23 0.00 40.63 3.93
659 660 6.422776 AAGTGTATTGAACAATCTTAGCCG 57.577 37.500 3.23 0.00 40.63 5.52
660 661 5.488341 AGTGTATTGAACAATCTTAGCCGT 58.512 37.500 3.23 0.00 40.63 5.68
661 662 5.581085 AGTGTATTGAACAATCTTAGCCGTC 59.419 40.000 3.23 0.00 40.63 4.79
662 663 4.873827 TGTATTGAACAATCTTAGCCGTCC 59.126 41.667 3.23 0.00 34.29 4.79
663 664 3.695830 TTGAACAATCTTAGCCGTCCT 57.304 42.857 0.00 0.00 0.00 3.85
664 665 3.695830 TGAACAATCTTAGCCGTCCTT 57.304 42.857 0.00 0.00 0.00 3.36
665 666 3.334691 TGAACAATCTTAGCCGTCCTTG 58.665 45.455 0.00 0.00 0.00 3.61
666 667 3.244422 TGAACAATCTTAGCCGTCCTTGT 60.244 43.478 0.00 0.00 0.00 3.16
667 668 2.699954 ACAATCTTAGCCGTCCTTGTG 58.300 47.619 0.00 0.00 0.00 3.33
668 669 2.038557 ACAATCTTAGCCGTCCTTGTGT 59.961 45.455 0.00 0.00 0.00 3.72
669 670 3.074412 CAATCTTAGCCGTCCTTGTGTT 58.926 45.455 0.00 0.00 0.00 3.32
670 671 2.163818 TCTTAGCCGTCCTTGTGTTG 57.836 50.000 0.00 0.00 0.00 3.33
671 672 1.414919 TCTTAGCCGTCCTTGTGTTGT 59.585 47.619 0.00 0.00 0.00 3.32
672 673 2.629137 TCTTAGCCGTCCTTGTGTTGTA 59.371 45.455 0.00 0.00 0.00 2.41
673 674 2.736144 TAGCCGTCCTTGTGTTGTAG 57.264 50.000 0.00 0.00 0.00 2.74
674 675 0.756903 AGCCGTCCTTGTGTTGTAGT 59.243 50.000 0.00 0.00 0.00 2.73
675 676 0.865769 GCCGTCCTTGTGTTGTAGTG 59.134 55.000 0.00 0.00 0.00 2.74
676 677 1.508632 CCGTCCTTGTGTTGTAGTGG 58.491 55.000 0.00 0.00 0.00 4.00
677 678 1.202604 CCGTCCTTGTGTTGTAGTGGT 60.203 52.381 0.00 0.00 0.00 4.16
678 679 2.557317 CGTCCTTGTGTTGTAGTGGTT 58.443 47.619 0.00 0.00 0.00 3.67
679 680 2.940410 CGTCCTTGTGTTGTAGTGGTTT 59.060 45.455 0.00 0.00 0.00 3.27
680 681 4.121317 CGTCCTTGTGTTGTAGTGGTTTA 58.879 43.478 0.00 0.00 0.00 2.01
681 682 4.025480 CGTCCTTGTGTTGTAGTGGTTTAC 60.025 45.833 0.00 0.00 0.00 2.01
682 683 5.121105 GTCCTTGTGTTGTAGTGGTTTACT 58.879 41.667 0.00 0.00 43.56 2.24
683 684 5.007332 GTCCTTGTGTTGTAGTGGTTTACTG 59.993 44.000 0.00 0.00 40.65 2.74
684 685 5.104859 TCCTTGTGTTGTAGTGGTTTACTGA 60.105 40.000 0.00 0.00 40.65 3.41
685 686 5.587043 CCTTGTGTTGTAGTGGTTTACTGAA 59.413 40.000 0.00 0.00 40.65 3.02
686 687 6.238374 CCTTGTGTTGTAGTGGTTTACTGAAG 60.238 42.308 0.00 0.00 40.65 3.02
687 688 5.736813 TGTGTTGTAGTGGTTTACTGAAGT 58.263 37.500 0.00 0.00 40.65 3.01
688 689 5.583061 TGTGTTGTAGTGGTTTACTGAAGTG 59.417 40.000 0.00 0.00 40.65 3.16
689 690 5.007332 GTGTTGTAGTGGTTTACTGAAGTGG 59.993 44.000 0.00 0.00 40.65 4.00
690 691 5.104859 TGTTGTAGTGGTTTACTGAAGTGGA 60.105 40.000 0.00 0.00 40.65 4.02
691 692 5.617528 TGTAGTGGTTTACTGAAGTGGAA 57.382 39.130 0.00 0.00 40.65 3.53
692 693 5.607477 TGTAGTGGTTTACTGAAGTGGAAG 58.393 41.667 0.00 0.00 40.65 3.46
693 694 3.477530 AGTGGTTTACTGAAGTGGAAGC 58.522 45.455 0.00 0.00 38.49 3.86
694 695 2.223377 GTGGTTTACTGAAGTGGAAGCG 59.777 50.000 0.00 0.00 0.00 4.68
695 696 2.158871 TGGTTTACTGAAGTGGAAGCGT 60.159 45.455 0.00 0.00 0.00 5.07
696 697 2.876550 GGTTTACTGAAGTGGAAGCGTT 59.123 45.455 0.00 0.00 0.00 4.84
697 698 3.303791 GGTTTACTGAAGTGGAAGCGTTG 60.304 47.826 0.00 0.00 0.00 4.10
698 699 2.902705 TACTGAAGTGGAAGCGTTGT 57.097 45.000 0.00 0.00 0.00 3.32
699 700 2.038387 ACTGAAGTGGAAGCGTTGTT 57.962 45.000 0.00 0.00 0.00 2.83
700 701 2.365582 ACTGAAGTGGAAGCGTTGTTT 58.634 42.857 0.00 0.00 0.00 2.83
701 702 2.354821 ACTGAAGTGGAAGCGTTGTTTC 59.645 45.455 0.00 0.00 0.00 2.78
702 703 2.614057 CTGAAGTGGAAGCGTTGTTTCT 59.386 45.455 0.00 0.00 0.00 2.52
703 704 3.799366 TGAAGTGGAAGCGTTGTTTCTA 58.201 40.909 0.00 0.00 0.00 2.10
704 705 4.385825 TGAAGTGGAAGCGTTGTTTCTAT 58.614 39.130 0.00 0.00 0.00 1.98
705 706 4.451096 TGAAGTGGAAGCGTTGTTTCTATC 59.549 41.667 0.00 0.00 0.00 2.08
706 707 3.335579 AGTGGAAGCGTTGTTTCTATCC 58.664 45.455 0.00 0.00 0.00 2.59
707 708 3.008049 AGTGGAAGCGTTGTTTCTATCCT 59.992 43.478 0.00 0.00 0.00 3.24
708 709 3.125316 GTGGAAGCGTTGTTTCTATCCTG 59.875 47.826 0.00 0.00 0.00 3.86
709 710 3.244422 TGGAAGCGTTGTTTCTATCCTGT 60.244 43.478 0.00 0.00 0.00 4.00
710 711 3.125316 GGAAGCGTTGTTTCTATCCTGTG 59.875 47.826 0.00 0.00 0.00 3.66
711 712 3.402628 AGCGTTGTTTCTATCCTGTGT 57.597 42.857 0.00 0.00 0.00 3.72
712 713 3.740115 AGCGTTGTTTCTATCCTGTGTT 58.260 40.909 0.00 0.00 0.00 3.32
713 714 4.134563 AGCGTTGTTTCTATCCTGTGTTT 58.865 39.130 0.00 0.00 0.00 2.83
714 715 5.302360 AGCGTTGTTTCTATCCTGTGTTTA 58.698 37.500 0.00 0.00 0.00 2.01
715 716 5.761234 AGCGTTGTTTCTATCCTGTGTTTAA 59.239 36.000 0.00 0.00 0.00 1.52
716 717 6.261381 AGCGTTGTTTCTATCCTGTGTTTAAA 59.739 34.615 0.00 0.00 0.00 1.52
717 718 6.913673 GCGTTGTTTCTATCCTGTGTTTAAAA 59.086 34.615 0.00 0.00 0.00 1.52
718 719 7.096763 GCGTTGTTTCTATCCTGTGTTTAAAAC 60.097 37.037 0.00 0.00 0.00 2.43
719 720 7.111041 CGTTGTTTCTATCCTGTGTTTAAAACG 59.889 37.037 0.00 0.00 0.00 3.60
720 721 6.961576 TGTTTCTATCCTGTGTTTAAAACGG 58.038 36.000 0.00 0.00 0.00 4.44
721 722 5.616488 TTCTATCCTGTGTTTAAAACGGC 57.384 39.130 0.00 0.00 0.00 5.68
722 723 2.981400 ATCCTGTGTTTAAAACGGCG 57.019 45.000 4.80 4.80 0.00 6.46
723 724 0.945813 TCCTGTGTTTAAAACGGCGG 59.054 50.000 13.24 0.00 0.00 6.13
724 725 0.945813 CCTGTGTTTAAAACGGCGGA 59.054 50.000 13.24 0.00 0.00 5.54
725 726 1.334329 CCTGTGTTTAAAACGGCGGAC 60.334 52.381 13.24 0.36 0.00 4.79
773 774 0.405585 CCCTCTCCTTTGGCTCCAAA 59.594 55.000 12.93 12.93 42.77 3.28
793 794 0.179000 CCCCTCGAGGACAAATGAGG 59.821 60.000 33.39 18.19 46.10 3.86
888 895 0.238289 GGCCATTAATCCATCACGCG 59.762 55.000 3.53 3.53 0.00 6.01
917 924 2.362077 GTTGCACAATCAACACCTCCTT 59.638 45.455 0.00 0.00 44.18 3.36
921 928 3.743521 CACAATCAACACCTCCTTCTCA 58.256 45.455 0.00 0.00 0.00 3.27
995 1002 1.141254 AGCCCTGCAATCTCTGATCTG 59.859 52.381 0.00 0.00 0.00 2.90
1026 1033 1.585668 CTACGCGTGCTCTTCTTGATG 59.414 52.381 24.59 0.00 0.00 3.07
1031 1038 1.818642 GTGCTCTTCTTGATGCTGGT 58.181 50.000 0.00 0.00 0.00 4.00
1212 1219 1.961277 CGTCACTTGCCTGTGGTCC 60.961 63.158 6.38 0.00 38.40 4.46
1221 1228 1.079256 CCTGTGGTCCTCCTCCTCA 59.921 63.158 0.00 0.00 34.23 3.86
1432 1439 1.607612 GGAAATGGCTTCTCCGGGA 59.392 57.895 0.00 0.00 37.80 5.14
1498 1505 0.744874 CCTCTCCGGCAATCGACTTA 59.255 55.000 0.00 0.00 42.43 2.24
1557 1564 1.409227 CGCTCGTGACACTGCATCTC 61.409 60.000 16.75 0.00 0.00 2.75
1608 1615 1.358402 CTCTCTGGAGTCGATGCCG 59.642 63.158 0.00 0.00 35.03 5.69
1641 1648 2.056577 CTCAACGTCTCCGGTAACAAC 58.943 52.381 0.00 0.00 38.78 3.32
1650 1657 2.388232 CGGTAACAACCTCAGCGGC 61.388 63.158 0.00 0.00 35.61 6.53
1662 1669 0.677731 TCAGCGGCCAGATTCCAAAG 60.678 55.000 2.24 0.00 0.00 2.77
1671 1678 0.036732 AGATTCCAAAGCACCTCGCA 59.963 50.000 0.00 0.00 46.13 5.10
1672 1679 0.881118 GATTCCAAAGCACCTCGCAA 59.119 50.000 0.00 0.00 46.13 4.85
1761 1768 2.017782 GACGGACAGCATCAGAGAGTA 58.982 52.381 0.00 0.00 0.00 2.59
1768 1775 2.232208 CAGCATCAGAGAGTACACACCA 59.768 50.000 0.00 0.00 0.00 4.17
1776 1804 0.246635 GAGTACACACCAGCGGACAT 59.753 55.000 0.00 0.00 0.00 3.06
1823 1851 2.158564 GGATGGTGGTGATGATCATGGT 60.159 50.000 14.30 0.00 0.00 3.55
2025 2053 4.537433 GGAGCCGCGGAGATGCTT 62.537 66.667 33.48 3.75 36.09 3.91
2076 2104 2.356278 GTCATGGGAGGCCAGCAA 59.644 61.111 5.01 0.00 0.00 3.91
2115 2143 2.896443 GAGGAGACCAAGGGCGAG 59.104 66.667 0.00 0.00 0.00 5.03
2117 2145 4.475135 GGAGACCAAGGGCGAGGC 62.475 72.222 0.00 0.00 0.00 4.70
2152 2180 1.306482 CTGAGGAGGAGGGAAGGCA 60.306 63.158 0.00 0.00 0.00 4.75
2232 2260 1.736645 CGCCAACATCGTCGACCTT 60.737 57.895 10.58 0.00 0.00 3.50
2322 2350 0.466922 GCCTCCTGCATGGTAAGCAT 60.467 55.000 0.00 0.00 41.82 3.79
2330 2358 1.527034 CATGGTAAGCATCCCCATCG 58.473 55.000 0.00 0.00 36.85 3.84
2335 2363 1.426251 TAAGCATCCCCATCGGCCAT 61.426 55.000 2.24 0.00 0.00 4.40
2363 2391 1.510204 GAGCTCGTCAGTCGTCACG 60.510 63.158 0.00 0.00 40.80 4.35
2370 2398 1.187271 CGTCAGTCGTCACGTCTTTTG 59.813 52.381 0.00 0.00 34.52 2.44
2379 2407 3.725490 GTCACGTCTTTTGTCTAAGGGT 58.275 45.455 0.00 0.00 0.00 4.34
2392 2420 0.250124 TAAGGGTTGTCTGCACACGG 60.250 55.000 0.00 0.00 29.76 4.94
2419 2447 5.992198 ATTCGACAGAGAACAGGGGACCT 62.992 52.174 0.00 0.00 46.83 3.85
2521 2549 3.237741 GGCTCTAGGCTCGCCCAT 61.238 66.667 3.92 0.00 41.46 4.00
2549 2577 0.176680 CACCTCCTCCAACATCCTCG 59.823 60.000 0.00 0.00 0.00 4.63
2556 2584 1.516386 CCAACATCCTCGTCGACGG 60.516 63.158 35.05 24.95 40.29 4.79
2603 2631 4.486503 CCCTGCTCCAGCTGCTCC 62.487 72.222 8.66 0.00 42.66 4.70
3074 3105 1.302271 GCTCGTTTCCGGTTTCCCT 60.302 57.895 0.00 0.00 33.95 4.20
3115 3146 7.398829 TCTCTAGAGAATAATATCGGCAGAGT 58.601 38.462 20.31 0.00 33.91 3.24
3122 3153 1.977056 ATATCGGCAGAGTACACGGA 58.023 50.000 0.00 0.00 0.00 4.69
3124 3155 0.892755 ATCGGCAGAGTACACGGAAA 59.107 50.000 0.00 0.00 0.00 3.13
3125 3156 0.242825 TCGGCAGAGTACACGGAAAG 59.757 55.000 0.00 0.00 0.00 2.62
3126 3157 0.736325 CGGCAGAGTACACGGAAAGG 60.736 60.000 0.00 0.00 0.00 3.11
3127 3158 0.606604 GGCAGAGTACACGGAAAGGA 59.393 55.000 0.00 0.00 0.00 3.36
3130 3161 3.335579 GCAGAGTACACGGAAAGGATTT 58.664 45.455 0.00 0.00 43.98 2.17
3166 4365 2.561733 GGTTTCTACGTACCGGGTAC 57.438 55.000 24.39 24.39 35.86 3.34
3180 4380 1.079127 GGTACTGCGTGCACTCCAT 60.079 57.895 16.19 0.00 0.00 3.41
3208 4408 5.048991 TGCACGTACACATATGAGATACGAT 60.049 40.000 28.18 17.42 40.76 3.73
3209 4409 5.856986 GCACGTACACATATGAGATACGATT 59.143 40.000 28.18 14.76 40.76 3.34
3210 4410 6.032565 GCACGTACACATATGAGATACGATTC 59.967 42.308 28.18 18.45 40.76 2.52
3211 4411 6.246540 CACGTACACATATGAGATACGATTCG 59.753 42.308 28.18 4.14 40.76 3.34
3212 4412 5.225334 CGTACACATATGAGATACGATTCGC 59.775 44.000 22.26 0.00 40.76 4.70
3213 4413 5.378292 ACACATATGAGATACGATTCGCT 57.622 39.130 10.38 0.00 0.00 4.93
3214 4414 5.157067 ACACATATGAGATACGATTCGCTG 58.843 41.667 10.38 0.00 0.00 5.18
3215 4415 4.031089 CACATATGAGATACGATTCGCTGC 59.969 45.833 10.38 0.00 0.00 5.25
3216 4416 2.800881 ATGAGATACGATTCGCTGCA 57.199 45.000 5.86 0.00 0.00 4.41
3217 4417 2.577449 TGAGATACGATTCGCTGCAA 57.423 45.000 5.86 0.00 0.00 4.08
3218 4418 2.887337 TGAGATACGATTCGCTGCAAA 58.113 42.857 5.86 0.00 0.00 3.68
3219 4419 3.258228 TGAGATACGATTCGCTGCAAAA 58.742 40.909 5.86 0.00 0.00 2.44
3220 4420 3.682377 TGAGATACGATTCGCTGCAAAAA 59.318 39.130 5.86 0.00 0.00 1.94
3296 4496 8.151141 TGATGCACATCATATTCTCTCTTTTC 57.849 34.615 9.23 0.00 42.42 2.29
3297 4497 7.991460 TGATGCACATCATATTCTCTCTTTTCT 59.009 33.333 9.23 0.00 42.42 2.52
3298 4498 8.749026 ATGCACATCATATTCTCTCTTTTCTT 57.251 30.769 0.00 0.00 32.59 2.52
3299 4499 7.982224 TGCACATCATATTCTCTCTTTTCTTG 58.018 34.615 0.00 0.00 0.00 3.02
3300 4500 7.609146 TGCACATCATATTCTCTCTTTTCTTGT 59.391 33.333 0.00 0.00 0.00 3.16
3301 4501 8.457261 GCACATCATATTCTCTCTTTTCTTGTT 58.543 33.333 0.00 0.00 0.00 2.83
3420 4621 4.082408 TCCATGAGATGCTTGCTCAAAAAG 60.082 41.667 0.00 0.00 44.71 2.27
3428 4629 3.070734 TGCTTGCTCAAAAAGGCCATTAA 59.929 39.130 5.01 0.00 0.00 1.40
3468 4669 5.545658 TCGTTTCAATAGATGTTTGCTCC 57.454 39.130 0.00 0.00 0.00 4.70
3570 4771 4.278669 TGTCAACTCTCTCTACCTCACAAC 59.721 45.833 0.00 0.00 0.00 3.32
3572 4773 2.438411 ACTCTCTCTACCTCACAACGG 58.562 52.381 0.00 0.00 0.00 4.44
3655 4858 2.840651 CTGTTAGGATCAAGTGGGACCT 59.159 50.000 0.00 0.00 35.11 3.85
3663 4867 5.016831 GGATCAAGTGGGACCTACATTTTT 58.983 41.667 11.00 0.00 0.00 1.94
3682 4886 3.536956 TTTTGTAGTGCGATAGAGGGG 57.463 47.619 0.00 0.00 39.76 4.79
3744 4952 2.975851 GCAAACAAGATTTGAGCTGACG 59.024 45.455 0.00 0.00 0.00 4.35
3751 4959 2.939103 AGATTTGAGCTGACGGTAATGC 59.061 45.455 0.00 0.00 0.00 3.56
3836 5044 3.003480 CCTAGTGGCAAAACTGAGTAGC 58.997 50.000 0.00 0.00 0.00 3.58
3841 5049 1.996191 GGCAAAACTGAGTAGCGAGAG 59.004 52.381 0.00 0.00 0.00 3.20
3889 5097 9.952030 AAAAACCCTTCTTTTGTATTTTCAAGA 57.048 25.926 0.00 0.00 0.00 3.02
3890 5098 9.952030 AAAACCCTTCTTTTGTATTTTCAAGAA 57.048 25.926 0.00 0.00 34.74 2.52
3892 5100 9.764363 AACCCTTCTTTTGTATTTTCAAGAATC 57.236 29.630 0.00 0.00 35.29 2.52
3893 5101 8.923270 ACCCTTCTTTTGTATTTTCAAGAATCA 58.077 29.630 0.00 0.00 35.29 2.57
3894 5102 9.933723 CCCTTCTTTTGTATTTTCAAGAATCAT 57.066 29.630 0.00 0.00 35.29 2.45
3936 5144 3.895704 TTTTAGGGGAAAGCCAGTTCT 57.104 42.857 0.00 0.00 35.15 3.01
3937 5145 3.895704 TTTAGGGGAAAGCCAGTTCTT 57.104 42.857 0.00 0.00 35.15 2.52
3938 5146 3.895704 TTAGGGGAAAGCCAGTTCTTT 57.104 42.857 0.00 0.00 38.85 2.52
3939 5147 5.327737 TTTAGGGGAAAGCCAGTTCTTTA 57.672 39.130 0.00 0.00 36.50 1.85
3940 5148 5.530176 TTAGGGGAAAGCCAGTTCTTTAT 57.470 39.130 0.00 0.00 36.50 1.40
3941 5149 4.404185 AGGGGAAAGCCAGTTCTTTATT 57.596 40.909 0.00 0.00 36.50 1.40
3942 5150 4.089361 AGGGGAAAGCCAGTTCTTTATTG 58.911 43.478 0.00 0.00 36.50 1.90
3943 5151 4.086457 GGGGAAAGCCAGTTCTTTATTGA 58.914 43.478 0.00 0.00 36.50 2.57
3944 5152 4.711846 GGGGAAAGCCAGTTCTTTATTGAT 59.288 41.667 0.00 0.00 36.50 2.57
3945 5153 5.163509 GGGGAAAGCCAGTTCTTTATTGATC 60.164 44.000 0.00 0.00 36.50 2.92
3946 5154 5.449177 GGGAAAGCCAGTTCTTTATTGATCG 60.449 44.000 0.00 0.00 36.50 3.69
3947 5155 5.354234 GGAAAGCCAGTTCTTTATTGATCGA 59.646 40.000 0.00 0.00 36.50 3.59
3948 5156 6.128007 GGAAAGCCAGTTCTTTATTGATCGAA 60.128 38.462 0.00 0.00 36.50 3.71
3949 5157 7.396540 AAAGCCAGTTCTTTATTGATCGAAT 57.603 32.000 0.00 0.00 34.76 3.34
3950 5158 7.396540 AAGCCAGTTCTTTATTGATCGAATT 57.603 32.000 0.00 0.00 0.00 2.17
3951 5159 7.020914 AGCCAGTTCTTTATTGATCGAATTC 57.979 36.000 0.00 0.00 0.00 2.17
3952 5160 6.038714 AGCCAGTTCTTTATTGATCGAATTCC 59.961 38.462 0.00 0.00 0.00 3.01
3953 5161 6.183360 GCCAGTTCTTTATTGATCGAATTCCA 60.183 38.462 0.00 0.00 0.00 3.53
3954 5162 7.189512 CCAGTTCTTTATTGATCGAATTCCAC 58.810 38.462 0.00 0.00 0.00 4.02
3955 5163 7.148255 CCAGTTCTTTATTGATCGAATTCCACA 60.148 37.037 0.00 0.00 0.00 4.17
3956 5164 8.400947 CAGTTCTTTATTGATCGAATTCCACAT 58.599 33.333 0.00 0.00 0.00 3.21
3957 5165 9.613428 AGTTCTTTATTGATCGAATTCCACATA 57.387 29.630 0.00 0.00 0.00 2.29
3975 5183 5.284079 CACATAAAGTGGGATAATGCTTGC 58.716 41.667 0.00 0.00 44.69 4.01
3976 5184 4.955450 ACATAAAGTGGGATAATGCTTGCA 59.045 37.500 0.00 0.00 0.00 4.08
3977 5185 5.599656 ACATAAAGTGGGATAATGCTTGCAT 59.400 36.000 1.81 1.81 0.00 3.96
3978 5186 4.660789 AAAGTGGGATAATGCTTGCATC 57.339 40.909 8.64 0.00 0.00 3.91
3979 5187 3.301794 AGTGGGATAATGCTTGCATCA 57.698 42.857 8.64 0.00 0.00 3.07
3980 5188 3.840991 AGTGGGATAATGCTTGCATCAT 58.159 40.909 8.64 0.00 0.00 2.45
3981 5189 3.572682 AGTGGGATAATGCTTGCATCATG 59.427 43.478 8.64 0.00 0.00 3.07
3982 5190 3.319972 GTGGGATAATGCTTGCATCATGT 59.680 43.478 8.64 0.00 0.00 3.21
3983 5191 3.319689 TGGGATAATGCTTGCATCATGTG 59.680 43.478 8.64 0.00 0.00 3.21
3984 5192 3.305813 GGGATAATGCTTGCATCATGTGG 60.306 47.826 8.64 0.00 0.00 4.17
3985 5193 3.319972 GGATAATGCTTGCATCATGTGGT 59.680 43.478 8.64 0.00 0.00 4.16
3986 5194 4.202182 GGATAATGCTTGCATCATGTGGTT 60.202 41.667 8.64 0.00 0.00 3.67
3987 5195 2.665649 ATGCTTGCATCATGTGGTTG 57.334 45.000 1.81 0.00 0.00 3.77
3988 5196 0.604073 TGCTTGCATCATGTGGTTGG 59.396 50.000 0.00 0.00 0.00 3.77
3989 5197 0.738412 GCTTGCATCATGTGGTTGGC 60.738 55.000 0.00 0.00 0.00 4.52
3990 5198 0.892755 CTTGCATCATGTGGTTGGCT 59.107 50.000 0.00 0.00 0.00 4.75
3991 5199 2.093890 CTTGCATCATGTGGTTGGCTA 58.906 47.619 0.00 0.00 0.00 3.93
3992 5200 2.212812 TGCATCATGTGGTTGGCTAA 57.787 45.000 0.00 0.00 0.00 3.09
3993 5201 2.523245 TGCATCATGTGGTTGGCTAAA 58.477 42.857 0.00 0.00 0.00 1.85
3994 5202 2.230992 TGCATCATGTGGTTGGCTAAAC 59.769 45.455 0.00 0.00 38.12 2.01
4005 5213 1.518325 TGGCTAAACCACACATGACG 58.482 50.000 0.00 0.00 46.36 4.35
4006 5214 0.168128 GGCTAAACCACACATGACGC 59.832 55.000 0.00 0.00 38.86 5.19
4007 5215 0.168128 GCTAAACCACACATGACGCC 59.832 55.000 0.00 0.00 0.00 5.68
4008 5216 0.802494 CTAAACCACACATGACGCCC 59.198 55.000 0.00 0.00 0.00 6.13
4009 5217 0.108774 TAAACCACACATGACGCCCA 59.891 50.000 0.00 0.00 0.00 5.36
4010 5218 1.172180 AAACCACACATGACGCCCAG 61.172 55.000 0.00 0.00 0.00 4.45
4011 5219 2.747460 CCACACATGACGCCCAGG 60.747 66.667 0.00 0.00 0.00 4.45
4012 5220 2.032528 CACACATGACGCCCAGGT 59.967 61.111 0.00 0.00 40.92 4.00
4015 5223 3.640407 ACATGACGCCCAGGTGCT 61.640 61.111 0.00 0.00 38.50 4.40
4016 5224 2.821366 CATGACGCCCAGGTGCTC 60.821 66.667 0.00 0.00 0.00 4.26
4017 5225 3.321648 ATGACGCCCAGGTGCTCA 61.322 61.111 0.00 1.51 0.00 4.26
4018 5226 3.612247 ATGACGCCCAGGTGCTCAC 62.612 63.158 0.00 0.00 0.00 3.51
4019 5227 4.314440 GACGCCCAGGTGCTCACA 62.314 66.667 2.21 0.00 0.00 3.58
4020 5228 3.825160 GACGCCCAGGTGCTCACAA 62.825 63.158 2.21 0.00 0.00 3.33
4021 5229 2.594303 CGCCCAGGTGCTCACAAA 60.594 61.111 2.21 0.00 0.00 2.83
4022 5230 2.620112 CGCCCAGGTGCTCACAAAG 61.620 63.158 2.21 0.00 0.00 2.77
4023 5231 2.270986 GCCCAGGTGCTCACAAAGG 61.271 63.158 2.21 0.50 0.00 3.11
4024 5232 1.604593 CCCAGGTGCTCACAAAGGG 60.605 63.158 2.21 5.93 33.85 3.95
4025 5233 2.270986 CCAGGTGCTCACAAAGGGC 61.271 63.158 2.21 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.783621 TCCTCGCCTGCCACATGC 62.784 66.667 0.00 0.00 41.77 4.06
15 16 2.513204 CTCCTCGCCTGCCACATG 60.513 66.667 0.00 0.00 0.00 3.21
16 17 2.685017 TCTCCTCGCCTGCCACAT 60.685 61.111 0.00 0.00 0.00 3.21
17 18 3.695606 GTCTCCTCGCCTGCCACA 61.696 66.667 0.00 0.00 0.00 4.17
18 19 4.803426 CGTCTCCTCGCCTGCCAC 62.803 72.222 0.00 0.00 0.00 5.01
22 23 4.504916 CTGCCGTCTCCTCGCCTG 62.505 72.222 0.00 0.00 0.00 4.85
27 28 4.200283 CTCCGCTGCCGTCTCCTC 62.200 72.222 0.00 0.00 0.00 3.71
50 51 4.817063 CAATCAACGCGCCTGCCG 62.817 66.667 5.73 0.00 38.08 5.69
446 447 3.773630 CACGTAGGCGGTTGCACG 61.774 66.667 0.00 0.00 43.70 5.34
447 448 4.084888 GCACGTAGGCGGTTGCAC 62.085 66.667 0.00 0.00 45.35 4.57
448 449 4.610714 TGCACGTAGGCGGTTGCA 62.611 61.111 0.00 2.61 44.16 4.08
449 450 3.124921 ATGCACGTAGGCGGTTGC 61.125 61.111 0.00 0.00 43.45 4.17
450 451 2.784596 CATGCACGTAGGCGGTTG 59.215 61.111 0.00 0.00 43.45 3.77
451 452 3.124921 GCATGCACGTAGGCGGTT 61.125 61.111 14.21 0.00 43.45 4.44
455 456 4.830765 TCCCGCATGCACGTAGGC 62.831 66.667 19.57 0.00 0.00 3.93
456 457 2.586079 CTCCCGCATGCACGTAGG 60.586 66.667 19.57 10.09 0.00 3.18
457 458 2.586079 CCTCCCGCATGCACGTAG 60.586 66.667 19.57 8.79 0.00 3.51
458 459 4.155733 CCCTCCCGCATGCACGTA 62.156 66.667 19.57 0.00 0.00 3.57
483 484 4.446413 AACCATCGTCCCGTCGCC 62.446 66.667 0.00 0.00 0.00 5.54
484 485 3.186047 CAACCATCGTCCCGTCGC 61.186 66.667 0.00 0.00 0.00 5.19
485 486 2.508439 CCAACCATCGTCCCGTCG 60.508 66.667 0.00 0.00 0.00 5.12
486 487 1.447314 GTCCAACCATCGTCCCGTC 60.447 63.158 0.00 0.00 0.00 4.79
487 488 1.911766 AGTCCAACCATCGTCCCGT 60.912 57.895 0.00 0.00 0.00 5.28
488 489 1.447838 CAGTCCAACCATCGTCCCG 60.448 63.158 0.00 0.00 0.00 5.14
489 490 0.541863 ATCAGTCCAACCATCGTCCC 59.458 55.000 0.00 0.00 0.00 4.46
490 491 3.118738 ACTTATCAGTCCAACCATCGTCC 60.119 47.826 0.00 0.00 0.00 4.79
491 492 4.124851 ACTTATCAGTCCAACCATCGTC 57.875 45.455 0.00 0.00 0.00 4.20
492 493 4.553330 AACTTATCAGTCCAACCATCGT 57.447 40.909 0.00 0.00 30.45 3.73
493 494 5.880054 AAAACTTATCAGTCCAACCATCG 57.120 39.130 0.00 0.00 30.45 3.84
494 495 5.863935 GCAAAAACTTATCAGTCCAACCATC 59.136 40.000 0.00 0.00 30.45 3.51
495 496 5.564651 CGCAAAAACTTATCAGTCCAACCAT 60.565 40.000 0.00 0.00 30.45 3.55
496 497 4.261405 CGCAAAAACTTATCAGTCCAACCA 60.261 41.667 0.00 0.00 30.45 3.67
497 498 4.226761 CGCAAAAACTTATCAGTCCAACC 58.773 43.478 0.00 0.00 30.45 3.77
498 499 4.226761 CCGCAAAAACTTATCAGTCCAAC 58.773 43.478 0.00 0.00 30.45 3.77
499 500 3.254657 CCCGCAAAAACTTATCAGTCCAA 59.745 43.478 0.00 0.00 30.45 3.53
500 501 2.817258 CCCGCAAAAACTTATCAGTCCA 59.183 45.455 0.00 0.00 30.45 4.02
501 502 2.415491 GCCCGCAAAAACTTATCAGTCC 60.415 50.000 0.00 0.00 30.45 3.85
502 503 2.727916 CGCCCGCAAAAACTTATCAGTC 60.728 50.000 0.00 0.00 30.45 3.51
503 504 1.199097 CGCCCGCAAAAACTTATCAGT 59.801 47.619 0.00 0.00 33.11 3.41
504 505 1.467374 CCGCCCGCAAAAACTTATCAG 60.467 52.381 0.00 0.00 0.00 2.90
505 506 0.523966 CCGCCCGCAAAAACTTATCA 59.476 50.000 0.00 0.00 0.00 2.15
506 507 0.179148 CCCGCCCGCAAAAACTTATC 60.179 55.000 0.00 0.00 0.00 1.75
507 508 1.887301 CCCGCCCGCAAAAACTTAT 59.113 52.632 0.00 0.00 0.00 1.73
508 509 2.921797 GCCCGCCCGCAAAAACTTA 61.922 57.895 0.00 0.00 0.00 2.24
509 510 4.293648 GCCCGCCCGCAAAAACTT 62.294 61.111 0.00 0.00 0.00 2.66
531 532 0.249996 TTTTCTTGTCCGGTCGTCCC 60.250 55.000 0.00 0.00 0.00 4.46
532 533 1.585297 TTTTTCTTGTCCGGTCGTCC 58.415 50.000 0.00 0.00 0.00 4.79
553 554 9.910511 GGTGAGTACGTATACAAATACAAATTG 57.089 33.333 0.00 0.00 38.31 2.32
554 555 9.880157 AGGTGAGTACGTATACAAATACAAATT 57.120 29.630 0.00 0.00 38.31 1.82
555 556 9.525409 GAGGTGAGTACGTATACAAATACAAAT 57.475 33.333 0.00 0.00 38.31 2.32
556 557 7.697710 CGAGGTGAGTACGTATACAAATACAAA 59.302 37.037 0.00 0.00 38.31 2.83
557 558 7.188834 CGAGGTGAGTACGTATACAAATACAA 58.811 38.462 0.00 0.00 38.31 2.41
558 559 6.238456 CCGAGGTGAGTACGTATACAAATACA 60.238 42.308 0.00 0.00 38.31 2.29
559 560 6.138761 CCGAGGTGAGTACGTATACAAATAC 58.861 44.000 0.00 2.66 35.56 1.89
560 561 5.239306 CCCGAGGTGAGTACGTATACAAATA 59.761 44.000 0.00 0.00 33.30 1.40
561 562 4.037208 CCCGAGGTGAGTACGTATACAAAT 59.963 45.833 0.00 0.00 33.30 2.32
562 563 3.378112 CCCGAGGTGAGTACGTATACAAA 59.622 47.826 0.00 0.00 33.30 2.83
563 564 2.945008 CCCGAGGTGAGTACGTATACAA 59.055 50.000 0.00 0.00 33.30 2.41
564 565 2.564771 CCCGAGGTGAGTACGTATACA 58.435 52.381 0.00 0.00 33.30 2.29
565 566 1.265365 GCCCGAGGTGAGTACGTATAC 59.735 57.143 0.00 0.00 0.00 1.47
566 567 1.597742 GCCCGAGGTGAGTACGTATA 58.402 55.000 0.00 0.00 0.00 1.47
567 568 1.442526 CGCCCGAGGTGAGTACGTAT 61.443 60.000 0.00 0.00 34.74 3.06
568 569 2.108514 CGCCCGAGGTGAGTACGTA 61.109 63.158 0.00 0.00 34.74 3.57
569 570 3.437795 CGCCCGAGGTGAGTACGT 61.438 66.667 0.00 0.00 34.74 3.57
570 571 4.189188 CCGCCCGAGGTGAGTACG 62.189 72.222 5.20 0.00 34.74 3.67
571 572 3.834799 CCCGCCCGAGGTGAGTAC 61.835 72.222 5.20 0.00 34.74 2.73
586 587 4.717313 AAAAGAGACCGCCCGCCC 62.717 66.667 0.00 0.00 0.00 6.13
587 588 2.671963 AAAAAGAGACCGCCCGCC 60.672 61.111 0.00 0.00 0.00 6.13
601 602 7.741554 AGGCACCATGGGTATAATTTAAAAA 57.258 32.000 18.09 0.00 32.11 1.94
602 603 7.741554 AAGGCACCATGGGTATAATTTAAAA 57.258 32.000 18.09 0.00 32.11 1.52
603 604 7.416890 CGAAAGGCACCATGGGTATAATTTAAA 60.417 37.037 18.09 0.00 32.11 1.52
604 605 6.039941 CGAAAGGCACCATGGGTATAATTTAA 59.960 38.462 18.09 0.00 32.11 1.52
605 606 5.533154 CGAAAGGCACCATGGGTATAATTTA 59.467 40.000 18.09 0.00 32.11 1.40
606 607 4.340950 CGAAAGGCACCATGGGTATAATTT 59.659 41.667 18.09 8.97 32.11 1.82
607 608 3.888930 CGAAAGGCACCATGGGTATAATT 59.111 43.478 18.09 3.64 32.11 1.40
608 609 3.117663 ACGAAAGGCACCATGGGTATAAT 60.118 43.478 18.09 0.00 32.11 1.28
609 610 2.240160 ACGAAAGGCACCATGGGTATAA 59.760 45.455 18.09 0.00 32.11 0.98
610 611 1.841277 ACGAAAGGCACCATGGGTATA 59.159 47.619 18.09 0.00 32.11 1.47
611 612 0.623723 ACGAAAGGCACCATGGGTAT 59.376 50.000 18.09 0.00 32.11 2.73
612 613 0.402504 AACGAAAGGCACCATGGGTA 59.597 50.000 18.09 0.00 32.11 3.69
613 614 0.402504 TAACGAAAGGCACCATGGGT 59.597 50.000 18.09 0.00 35.62 4.51
614 615 1.405105 CATAACGAAAGGCACCATGGG 59.595 52.381 18.09 6.26 0.00 4.00
615 616 2.364632 TCATAACGAAAGGCACCATGG 58.635 47.619 11.19 11.19 0.00 3.66
616 617 4.433186 TTTCATAACGAAAGGCACCATG 57.567 40.909 0.00 0.00 38.72 3.66
626 627 9.820229 GATTGTTCAATACACTTTCATAACGAA 57.180 29.630 0.00 0.00 36.21 3.85
627 628 9.214957 AGATTGTTCAATACACTTTCATAACGA 57.785 29.630 0.00 0.00 36.21 3.85
628 629 9.825972 AAGATTGTTCAATACACTTTCATAACG 57.174 29.630 0.00 0.00 36.21 3.18
632 633 8.462016 GGCTAAGATTGTTCAATACACTTTCAT 58.538 33.333 0.00 0.00 36.21 2.57
633 634 7.360861 CGGCTAAGATTGTTCAATACACTTTCA 60.361 37.037 0.00 0.00 36.21 2.69
634 635 6.961554 CGGCTAAGATTGTTCAATACACTTTC 59.038 38.462 0.00 0.00 36.21 2.62
635 636 6.430000 ACGGCTAAGATTGTTCAATACACTTT 59.570 34.615 0.00 0.00 36.21 2.66
636 637 5.938125 ACGGCTAAGATTGTTCAATACACTT 59.062 36.000 0.00 1.73 36.21 3.16
637 638 5.488341 ACGGCTAAGATTGTTCAATACACT 58.512 37.500 0.00 0.00 36.21 3.55
638 639 5.220605 GGACGGCTAAGATTGTTCAATACAC 60.221 44.000 0.00 0.00 36.21 2.90
639 640 4.873827 GGACGGCTAAGATTGTTCAATACA 59.126 41.667 0.00 0.00 34.12 2.29
640 641 5.116882 AGGACGGCTAAGATTGTTCAATAC 58.883 41.667 0.00 0.00 0.00 1.89
641 642 5.353394 AGGACGGCTAAGATTGTTCAATA 57.647 39.130 0.00 0.00 0.00 1.90
642 643 4.222124 AGGACGGCTAAGATTGTTCAAT 57.778 40.909 0.00 0.00 0.00 2.57
643 644 3.695830 AGGACGGCTAAGATTGTTCAA 57.304 42.857 0.00 0.00 0.00 2.69
644 645 3.244422 ACAAGGACGGCTAAGATTGTTCA 60.244 43.478 0.00 0.00 0.00 3.18
645 646 3.125316 CACAAGGACGGCTAAGATTGTTC 59.875 47.826 0.00 0.00 0.00 3.18
646 647 3.074412 CACAAGGACGGCTAAGATTGTT 58.926 45.455 0.00 0.00 0.00 2.83
647 648 2.038557 ACACAAGGACGGCTAAGATTGT 59.961 45.455 0.00 0.00 0.00 2.71
648 649 2.699954 ACACAAGGACGGCTAAGATTG 58.300 47.619 0.00 0.00 0.00 2.67
649 650 3.074412 CAACACAAGGACGGCTAAGATT 58.926 45.455 0.00 0.00 0.00 2.40
650 651 2.038557 ACAACACAAGGACGGCTAAGAT 59.961 45.455 0.00 0.00 0.00 2.40
651 652 1.414919 ACAACACAAGGACGGCTAAGA 59.585 47.619 0.00 0.00 0.00 2.10
652 653 1.878953 ACAACACAAGGACGGCTAAG 58.121 50.000 0.00 0.00 0.00 2.18
653 654 2.366266 ACTACAACACAAGGACGGCTAA 59.634 45.455 0.00 0.00 0.00 3.09
654 655 1.965643 ACTACAACACAAGGACGGCTA 59.034 47.619 0.00 0.00 0.00 3.93
655 656 0.756903 ACTACAACACAAGGACGGCT 59.243 50.000 0.00 0.00 0.00 5.52
656 657 0.865769 CACTACAACACAAGGACGGC 59.134 55.000 0.00 0.00 0.00 5.68
657 658 1.202604 ACCACTACAACACAAGGACGG 60.203 52.381 0.00 0.00 0.00 4.79
658 659 2.234300 ACCACTACAACACAAGGACG 57.766 50.000 0.00 0.00 0.00 4.79
659 660 5.007332 CAGTAAACCACTACAACACAAGGAC 59.993 44.000 0.00 0.00 34.98 3.85
660 661 5.104859 TCAGTAAACCACTACAACACAAGGA 60.105 40.000 0.00 0.00 34.98 3.36
661 662 5.120399 TCAGTAAACCACTACAACACAAGG 58.880 41.667 0.00 0.00 34.98 3.61
662 663 6.315393 ACTTCAGTAAACCACTACAACACAAG 59.685 38.462 0.00 0.00 34.98 3.16
663 664 6.092944 CACTTCAGTAAACCACTACAACACAA 59.907 38.462 0.00 0.00 34.98 3.33
664 665 5.583061 CACTTCAGTAAACCACTACAACACA 59.417 40.000 0.00 0.00 34.98 3.72
665 666 5.007332 CCACTTCAGTAAACCACTACAACAC 59.993 44.000 0.00 0.00 34.98 3.32
666 667 5.104859 TCCACTTCAGTAAACCACTACAACA 60.105 40.000 0.00 0.00 34.98 3.33
667 668 5.362263 TCCACTTCAGTAAACCACTACAAC 58.638 41.667 0.00 0.00 34.98 3.32
668 669 5.617528 TCCACTTCAGTAAACCACTACAA 57.382 39.130 0.00 0.00 34.98 2.41
669 670 5.607477 CTTCCACTTCAGTAAACCACTACA 58.393 41.667 0.00 0.00 34.98 2.74
670 671 4.451435 GCTTCCACTTCAGTAAACCACTAC 59.549 45.833 0.00 0.00 34.98 2.73
671 672 4.638304 GCTTCCACTTCAGTAAACCACTA 58.362 43.478 0.00 0.00 34.98 2.74
672 673 3.477530 GCTTCCACTTCAGTAAACCACT 58.522 45.455 0.00 0.00 38.32 4.00
673 674 2.223377 CGCTTCCACTTCAGTAAACCAC 59.777 50.000 0.00 0.00 0.00 4.16
674 675 2.158871 ACGCTTCCACTTCAGTAAACCA 60.159 45.455 0.00 0.00 0.00 3.67
675 676 2.490991 ACGCTTCCACTTCAGTAAACC 58.509 47.619 0.00 0.00 0.00 3.27
676 677 3.311596 ACAACGCTTCCACTTCAGTAAAC 59.688 43.478 0.00 0.00 0.00 2.01
677 678 3.537580 ACAACGCTTCCACTTCAGTAAA 58.462 40.909 0.00 0.00 0.00 2.01
678 679 3.188159 ACAACGCTTCCACTTCAGTAA 57.812 42.857 0.00 0.00 0.00 2.24
679 680 2.902705 ACAACGCTTCCACTTCAGTA 57.097 45.000 0.00 0.00 0.00 2.74
680 681 2.038387 AACAACGCTTCCACTTCAGT 57.962 45.000 0.00 0.00 0.00 3.41
681 682 2.614057 AGAAACAACGCTTCCACTTCAG 59.386 45.455 0.00 0.00 0.00 3.02
682 683 2.639065 AGAAACAACGCTTCCACTTCA 58.361 42.857 0.00 0.00 0.00 3.02
683 684 4.142881 GGATAGAAACAACGCTTCCACTTC 60.143 45.833 0.00 0.00 0.00 3.01
684 685 3.751698 GGATAGAAACAACGCTTCCACTT 59.248 43.478 0.00 0.00 0.00 3.16
685 686 3.008049 AGGATAGAAACAACGCTTCCACT 59.992 43.478 0.00 0.00 0.00 4.00
686 687 3.125316 CAGGATAGAAACAACGCTTCCAC 59.875 47.826 0.00 0.00 0.00 4.02
687 688 3.244422 ACAGGATAGAAACAACGCTTCCA 60.244 43.478 0.00 0.00 0.00 3.53
688 689 3.125316 CACAGGATAGAAACAACGCTTCC 59.875 47.826 0.00 0.00 0.00 3.46
689 690 3.746492 ACACAGGATAGAAACAACGCTTC 59.254 43.478 0.00 0.00 0.00 3.86
690 691 3.740115 ACACAGGATAGAAACAACGCTT 58.260 40.909 0.00 0.00 0.00 4.68
691 692 3.402628 ACACAGGATAGAAACAACGCT 57.597 42.857 0.00 0.00 0.00 5.07
692 693 4.483476 AAACACAGGATAGAAACAACGC 57.517 40.909 0.00 0.00 0.00 4.84
693 694 7.111041 CGTTTTAAACACAGGATAGAAACAACG 59.889 37.037 8.61 0.00 0.00 4.10
694 695 7.377662 CCGTTTTAAACACAGGATAGAAACAAC 59.622 37.037 8.61 0.00 0.00 3.32
695 696 7.419204 CCGTTTTAAACACAGGATAGAAACAA 58.581 34.615 8.61 0.00 0.00 2.83
696 697 6.513720 GCCGTTTTAAACACAGGATAGAAACA 60.514 38.462 8.61 0.00 0.00 2.83
697 698 5.854866 GCCGTTTTAAACACAGGATAGAAAC 59.145 40.000 8.61 0.00 0.00 2.78
698 699 5.334260 CGCCGTTTTAAACACAGGATAGAAA 60.334 40.000 8.61 0.00 0.00 2.52
699 700 4.152759 CGCCGTTTTAAACACAGGATAGAA 59.847 41.667 8.61 0.00 0.00 2.10
700 701 3.680937 CGCCGTTTTAAACACAGGATAGA 59.319 43.478 8.61 0.00 0.00 1.98
701 702 3.181514 CCGCCGTTTTAAACACAGGATAG 60.182 47.826 8.61 0.00 0.00 2.08
702 703 2.743126 CCGCCGTTTTAAACACAGGATA 59.257 45.455 8.61 0.00 0.00 2.59
703 704 1.538075 CCGCCGTTTTAAACACAGGAT 59.462 47.619 8.61 0.00 0.00 3.24
704 705 0.945813 CCGCCGTTTTAAACACAGGA 59.054 50.000 8.61 0.00 0.00 3.86
705 706 0.945813 TCCGCCGTTTTAAACACAGG 59.054 50.000 8.61 7.26 0.00 4.00
706 707 1.658094 CGTCCGCCGTTTTAAACACAG 60.658 52.381 8.61 0.00 0.00 3.66
707 708 0.304098 CGTCCGCCGTTTTAAACACA 59.696 50.000 8.61 0.00 0.00 3.72
708 709 0.581053 TCGTCCGCCGTTTTAAACAC 59.419 50.000 8.61 0.00 37.94 3.32
709 710 0.860533 CTCGTCCGCCGTTTTAAACA 59.139 50.000 8.61 0.00 37.94 2.83
710 711 0.451628 GCTCGTCCGCCGTTTTAAAC 60.452 55.000 0.00 0.00 37.94 2.01
711 712 1.861440 GCTCGTCCGCCGTTTTAAA 59.139 52.632 0.00 0.00 37.94 1.52
712 713 2.374226 CGCTCGTCCGCCGTTTTAA 61.374 57.895 0.00 0.00 37.94 1.52
713 714 2.806198 CGCTCGTCCGCCGTTTTA 60.806 61.111 0.00 0.00 37.94 1.52
714 715 4.955774 ACGCTCGTCCGCCGTTTT 62.956 61.111 0.00 0.00 37.94 2.43
723 724 3.764049 GTGCAACGGACGCTCGTC 61.764 66.667 13.45 13.45 43.07 4.20
773 774 0.905357 CTCATTTGTCCTCGAGGGGT 59.095 55.000 30.80 10.06 35.41 4.95
888 895 3.667429 GATTGTGCAACGGCCGAGC 62.667 63.158 35.90 32.65 42.39 5.03
917 924 2.044555 CACGGTAGGGACGCTGAGA 61.045 63.158 1.57 0.00 34.00 3.27
995 1002 0.179225 CACGCGTAGTGCCATGAAAC 60.179 55.000 13.44 0.00 44.72 2.78
1205 1212 0.325671 GGATGAGGAGGAGGACCACA 60.326 60.000 0.00 0.00 38.94 4.17
1207 1214 1.075970 CGGATGAGGAGGAGGACCA 60.076 63.158 0.00 0.00 38.94 4.02
1212 1219 1.333636 AAGTGGCGGATGAGGAGGAG 61.334 60.000 0.00 0.00 0.00 3.69
1296 1303 0.820871 GCGAAGGGAGATCTGTGAGT 59.179 55.000 0.00 0.00 0.00 3.41
1300 1307 1.398692 GAGAGCGAAGGGAGATCTGT 58.601 55.000 0.00 0.00 34.17 3.41
1302 1309 0.106918 ACGAGAGCGAAGGGAGATCT 60.107 55.000 0.00 0.00 41.64 2.75
1365 1372 1.257743 CCAAGGGAGAGAAGTCGACA 58.742 55.000 19.50 0.00 0.00 4.35
1476 1483 2.278857 CGATTGCCGGAGAGGTCG 60.279 66.667 5.05 2.92 43.70 4.79
1608 1615 1.067495 ACGTTGAGCTCAGCTACCTTC 60.067 52.381 25.44 6.59 39.88 3.46
1612 1619 1.468395 GGAGACGTTGAGCTCAGCTAC 60.468 57.143 25.44 16.42 39.88 3.58
1641 1648 2.203126 GGAATCTGGCCGCTGAGG 60.203 66.667 0.00 0.00 44.97 3.86
1650 1657 1.089920 CGAGGTGCTTTGGAATCTGG 58.910 55.000 0.00 0.00 0.00 3.86
1683 1690 3.081133 CCCAGAAACGATGACGCG 58.919 61.111 3.53 3.53 43.96 6.01
1752 1759 0.881796 CGCTGGTGTGTACTCTCTGA 59.118 55.000 0.00 0.00 0.00 3.27
1761 1768 2.032528 CCATGTCCGCTGGTGTGT 59.967 61.111 0.00 0.00 0.00 3.72
1768 1775 1.306141 TCCTTCTCCCATGTCCGCT 60.306 57.895 0.00 0.00 0.00 5.52
1872 1900 1.748950 TGTTCTTCAAGCACAGCACA 58.251 45.000 0.00 0.00 0.00 4.57
2115 2143 2.358737 CTCTTCACCACCACCGCC 60.359 66.667 0.00 0.00 0.00 6.13
2117 2145 2.358737 GCCTCTTCACCACCACCG 60.359 66.667 0.00 0.00 0.00 4.94
2363 2391 4.023963 GCAGACAACCCTTAGACAAAAGAC 60.024 45.833 0.00 0.00 0.00 3.01
2370 2398 2.143925 GTGTGCAGACAACCCTTAGAC 58.856 52.381 9.48 0.00 32.49 2.59
2379 2407 2.050836 ATCCACCCGTGTGCAGACAA 62.051 55.000 15.02 0.00 41.35 3.18
2392 2420 2.611518 CTGTTCTCTGTCGAATCCACC 58.388 52.381 0.00 0.00 0.00 4.61
2521 2549 2.680352 GAGGAGGTGAGGTGGCGA 60.680 66.667 0.00 0.00 0.00 5.54
2575 2603 3.708220 GAGCAGGGCGAAGTCGGAG 62.708 68.421 2.47 0.00 40.23 4.63
2618 2646 0.478072 TTCTGCAGGGCCTTTTCTGA 59.522 50.000 15.13 2.91 33.11 3.27
2659 2687 1.959985 AGTATCTCCAGCAGGATGACG 59.040 52.381 0.00 0.00 44.70 4.35
2771 2799 4.479993 GGTCCGCAGCAGCTCCAT 62.480 66.667 0.00 0.00 39.10 3.41
3101 3132 3.479489 TCCGTGTACTCTGCCGATATTA 58.521 45.455 0.00 0.00 0.00 0.98
3107 3138 0.736325 CCTTTCCGTGTACTCTGCCG 60.736 60.000 0.00 0.00 0.00 5.69
3130 3161 3.078836 CGCCCGGTTCCCTTAGGA 61.079 66.667 0.00 0.00 41.88 2.94
3131 3162 4.171103 CCGCCCGGTTCCCTTAGG 62.171 72.222 0.00 0.00 0.00 2.69
3141 3172 1.517039 GTACGTAGAAACCGCCCGG 60.517 63.158 4.96 4.96 42.03 5.73
3142 3173 1.517039 GGTACGTAGAAACCGCCCG 60.517 63.158 0.00 0.00 0.00 6.13
3162 4361 1.079127 ATGGAGTGCACGCAGTACC 60.079 57.895 22.36 14.21 41.61 3.34
3164 4363 0.892063 TACATGGAGTGCACGCAGTA 59.108 50.000 22.36 16.95 41.61 2.74
3166 4365 0.654160 CATACATGGAGTGCACGCAG 59.346 55.000 22.36 13.23 0.00 5.18
3180 4380 5.508200 TCTCATATGTGTACGTGCATACA 57.492 39.130 10.21 4.37 31.38 2.29
3377 4578 5.000591 TGGAACGATGACATTTTTGAGCTA 58.999 37.500 0.00 0.00 0.00 3.32
3378 4579 3.820467 TGGAACGATGACATTTTTGAGCT 59.180 39.130 0.00 0.00 0.00 4.09
3451 4652 7.039853 TGACATTTTGGAGCAAACATCTATTGA 60.040 33.333 0.00 0.00 32.79 2.57
3454 4655 6.839124 TGACATTTTGGAGCAAACATCTAT 57.161 33.333 0.00 0.00 32.79 1.98
3523 4724 6.599986 TGTGGGTATAGGGGTATTTTCATT 57.400 37.500 0.00 0.00 0.00 2.57
3639 4842 2.642171 TGTAGGTCCCACTTGATCCT 57.358 50.000 0.00 0.00 0.00 3.24
3663 4867 1.760613 CCCCCTCTATCGCACTACAAA 59.239 52.381 0.00 0.00 0.00 2.83
3672 4876 0.468214 TGTCAGCTCCCCCTCTATCG 60.468 60.000 0.00 0.00 0.00 2.92
3682 4886 8.345565 CAAAATACCTATAAACATGTCAGCTCC 58.654 37.037 0.00 0.00 0.00 4.70
3751 4959 6.075205 GCATGCTTAAAAATGCTATTCGACAG 60.075 38.462 11.37 0.00 44.64 3.51
3760 4968 1.205417 AGGCGCATGCTTAAAAATGCT 59.795 42.857 17.13 0.00 45.62 3.79
3836 5044 0.036952 ATGCCACTGGTTGTCTCTCG 60.037 55.000 0.00 0.00 0.00 4.04
3841 5049 4.989279 ATCATTTATGCCACTGGTTGTC 57.011 40.909 0.00 0.00 0.00 3.18
3915 5123 4.193240 AGAACTGGCTTTCCCCTAAAAA 57.807 40.909 0.00 0.00 0.00 1.94
3916 5124 3.895704 AGAACTGGCTTTCCCCTAAAA 57.104 42.857 0.00 0.00 0.00 1.52
3917 5125 3.895704 AAGAACTGGCTTTCCCCTAAA 57.104 42.857 0.00 0.00 0.00 1.85
3918 5126 3.895704 AAAGAACTGGCTTTCCCCTAA 57.104 42.857 0.00 0.00 32.94 2.69
3919 5127 5.014755 TCAATAAAGAACTGGCTTTCCCCTA 59.985 40.000 0.00 0.00 38.85 3.53
3920 5128 4.089361 CAATAAAGAACTGGCTTTCCCCT 58.911 43.478 0.00 0.00 38.85 4.79
3921 5129 4.086457 TCAATAAAGAACTGGCTTTCCCC 58.914 43.478 0.00 0.00 38.85 4.81
3922 5130 5.449177 CGATCAATAAAGAACTGGCTTTCCC 60.449 44.000 0.00 0.00 38.85 3.97
3923 5131 5.354234 TCGATCAATAAAGAACTGGCTTTCC 59.646 40.000 0.00 0.00 38.85 3.13
3924 5132 6.422776 TCGATCAATAAAGAACTGGCTTTC 57.577 37.500 0.00 0.00 38.85 2.62
3925 5133 6.817765 TTCGATCAATAAAGAACTGGCTTT 57.182 33.333 0.00 0.00 40.85 3.51
3926 5134 7.396540 AATTCGATCAATAAAGAACTGGCTT 57.603 32.000 0.00 0.00 0.00 4.35
3927 5135 6.038714 GGAATTCGATCAATAAAGAACTGGCT 59.961 38.462 0.00 0.00 0.00 4.75
3928 5136 6.183360 TGGAATTCGATCAATAAAGAACTGGC 60.183 38.462 0.00 0.00 0.00 4.85
3929 5137 7.148255 TGTGGAATTCGATCAATAAAGAACTGG 60.148 37.037 0.00 0.00 0.00 4.00
3930 5138 7.751732 TGTGGAATTCGATCAATAAAGAACTG 58.248 34.615 0.00 0.00 0.00 3.16
3931 5139 7.921786 TGTGGAATTCGATCAATAAAGAACT 57.078 32.000 0.00 0.00 0.00 3.01
3952 5160 5.163530 TGCAAGCATTATCCCACTTTATGTG 60.164 40.000 0.00 0.00 45.80 3.21
3953 5161 4.955450 TGCAAGCATTATCCCACTTTATGT 59.045 37.500 0.00 0.00 0.00 2.29
3954 5162 5.518848 TGCAAGCATTATCCCACTTTATG 57.481 39.130 0.00 0.00 0.00 1.90
3955 5163 5.834742 TGATGCAAGCATTATCCCACTTTAT 59.165 36.000 9.16 0.00 36.70 1.40
3956 5164 5.199723 TGATGCAAGCATTATCCCACTTTA 58.800 37.500 9.16 0.00 36.70 1.85
3957 5165 4.025360 TGATGCAAGCATTATCCCACTTT 58.975 39.130 9.16 0.00 36.70 2.66
3958 5166 3.634504 TGATGCAAGCATTATCCCACTT 58.365 40.909 9.16 0.00 36.70 3.16
3959 5167 3.301794 TGATGCAAGCATTATCCCACT 57.698 42.857 9.16 0.00 36.70 4.00
3960 5168 3.319972 ACATGATGCAAGCATTATCCCAC 59.680 43.478 9.16 0.00 42.55 4.61
3961 5169 3.319689 CACATGATGCAAGCATTATCCCA 59.680 43.478 9.16 2.58 42.55 4.37
3962 5170 3.305813 CCACATGATGCAAGCATTATCCC 60.306 47.826 9.16 0.00 42.55 3.85
3963 5171 3.319972 ACCACATGATGCAAGCATTATCC 59.680 43.478 9.16 0.00 42.55 2.59
3964 5172 4.579454 ACCACATGATGCAAGCATTATC 57.421 40.909 9.16 0.00 42.55 1.75
3965 5173 4.442332 CCAACCACATGATGCAAGCATTAT 60.442 41.667 9.16 7.72 42.55 1.28
3966 5174 3.119065 CCAACCACATGATGCAAGCATTA 60.119 43.478 9.16 5.43 42.55 1.90
3967 5175 2.354303 CCAACCACATGATGCAAGCATT 60.354 45.455 9.16 0.00 42.55 3.56
3969 5177 0.604073 CCAACCACATGATGCAAGCA 59.396 50.000 0.00 0.00 35.55 3.91
3970 5178 0.738412 GCCAACCACATGATGCAAGC 60.738 55.000 0.00 0.00 0.00 4.01
3971 5179 0.892755 AGCCAACCACATGATGCAAG 59.107 50.000 0.00 0.00 0.00 4.01
3972 5180 2.212812 TAGCCAACCACATGATGCAA 57.787 45.000 0.00 0.00 0.00 4.08
3973 5181 2.212812 TTAGCCAACCACATGATGCA 57.787 45.000 0.00 0.00 0.00 3.96
3974 5182 2.879826 GTTTAGCCAACCACATGATGC 58.120 47.619 0.00 0.00 0.00 3.91
3986 5194 1.518325 CGTCATGTGTGGTTTAGCCA 58.482 50.000 0.00 0.00 46.95 4.75
3987 5195 0.168128 GCGTCATGTGTGGTTTAGCC 59.832 55.000 0.00 0.00 37.90 3.93
3988 5196 0.168128 GGCGTCATGTGTGGTTTAGC 59.832 55.000 0.00 0.00 0.00 3.09
3989 5197 0.802494 GGGCGTCATGTGTGGTTTAG 59.198 55.000 0.00 0.00 0.00 1.85
3990 5198 0.108774 TGGGCGTCATGTGTGGTTTA 59.891 50.000 0.00 0.00 0.00 2.01
3991 5199 1.152860 TGGGCGTCATGTGTGGTTT 60.153 52.632 0.00 0.00 0.00 3.27
3992 5200 1.600636 CTGGGCGTCATGTGTGGTT 60.601 57.895 0.00 0.00 0.00 3.67
3993 5201 2.032528 CTGGGCGTCATGTGTGGT 59.967 61.111 0.00 0.00 0.00 4.16
3994 5202 2.747460 CCTGGGCGTCATGTGTGG 60.747 66.667 0.00 0.00 0.00 4.17
3995 5203 2.032528 ACCTGGGCGTCATGTGTG 59.967 61.111 0.00 0.00 0.00 3.82
3996 5204 2.032528 CACCTGGGCGTCATGTGT 59.967 61.111 0.00 0.00 37.27 3.72
3997 5205 3.434319 GCACCTGGGCGTCATGTG 61.434 66.667 0.00 10.23 42.46 3.21
3998 5206 3.612247 GAGCACCTGGGCGTCATGT 62.612 63.158 0.00 0.00 39.27 3.21
3999 5207 2.821366 GAGCACCTGGGCGTCATG 60.821 66.667 0.00 0.00 39.27 3.07
4000 5208 3.321648 TGAGCACCTGGGCGTCAT 61.322 61.111 0.00 0.00 39.27 3.06
4001 5209 4.314440 GTGAGCACCTGGGCGTCA 62.314 66.667 0.00 2.61 39.27 4.35
4002 5210 3.825160 TTGTGAGCACCTGGGCGTC 62.825 63.158 0.00 0.17 39.27 5.19
4003 5211 3.414136 TTTGTGAGCACCTGGGCGT 62.414 57.895 0.00 0.00 39.27 5.68
4004 5212 2.594303 TTTGTGAGCACCTGGGCG 60.594 61.111 0.00 0.00 39.27 6.13
4005 5213 2.270986 CCTTTGTGAGCACCTGGGC 61.271 63.158 0.00 0.00 0.00 5.36
4006 5214 1.604593 CCCTTTGTGAGCACCTGGG 60.605 63.158 0.00 7.81 0.00 4.45
4007 5215 2.270986 GCCCTTTGTGAGCACCTGG 61.271 63.158 0.00 0.00 0.00 4.45
4008 5216 3.359002 GCCCTTTGTGAGCACCTG 58.641 61.111 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.