Multiple sequence alignment - TraesCS3B01G279600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G279600 chr3B 100.000 3390 0 0 1 3390 449208551 449205162 0.000000e+00 6261.0
1 TraesCS3B01G279600 chr3B 86.667 120 14 2 3044 3162 708008870 708008752 7.630000e-27 132.0
2 TraesCS3B01G279600 chr3D 92.687 3104 137 39 13 3040 350798182 350795093 0.000000e+00 4392.0
3 TraesCS3B01G279600 chr3A 93.914 1906 86 17 862 2753 468533632 468531743 0.000000e+00 2850.0
4 TraesCS3B01G279600 chr3A 78.615 491 60 22 345 800 468539504 468539024 1.990000e-72 283.0
5 TraesCS3B01G279600 chr3A 88.362 232 20 2 2816 3040 468519191 468518960 4.310000e-69 272.0
6 TraesCS3B01G279600 chr3A 85.621 153 21 1 108 259 468539693 468539541 3.500000e-35 159.0
7 TraesCS3B01G279600 chr6B 93.353 346 16 3 3044 3388 641950012 641950351 3.900000e-139 505.0
8 TraesCS3B01G279600 chr6B 84.058 138 19 2 3046 3181 664287849 664287985 2.750000e-26 130.0
9 TraesCS3B01G279600 chr2B 88.235 119 13 1 3057 3174 722400362 722400480 1.270000e-29 141.0
10 TraesCS3B01G279600 chr2D 85.833 120 14 3 3044 3162 591781451 591781568 1.280000e-24 124.0
11 TraesCS3B01G279600 chr5A 80.795 151 26 3 2549 2697 458228352 458228203 7.690000e-22 115.0
12 TraesCS3B01G279600 chr6A 79.141 163 29 4 2535 2694 332564492 332564652 1.290000e-19 108.0
13 TraesCS3B01G279600 chr6A 78.667 150 25 6 2551 2696 516155519 516155665 3.600000e-15 93.5
14 TraesCS3B01G279600 chr6A 80.159 126 21 4 2549 2671 448649467 448649591 1.300000e-14 91.6
15 TraesCS3B01G279600 chr6A 77.333 150 31 3 2549 2696 6893813 6893665 6.030000e-13 86.1
16 TraesCS3B01G279600 chr2A 79.104 134 24 4 2542 2672 7561091 7560959 4.660000e-14 89.8
17 TraesCS3B01G279600 chr2A 75.000 192 45 3 2507 2696 716885100 716885290 6.030000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G279600 chr3B 449205162 449208551 3389 True 6261 6261 100.000 1 3390 1 chr3B.!!$R1 3389
1 TraesCS3B01G279600 chr3D 350795093 350798182 3089 True 4392 4392 92.687 13 3040 1 chr3D.!!$R1 3027
2 TraesCS3B01G279600 chr3A 468531743 468533632 1889 True 2850 2850 93.914 862 2753 1 chr3A.!!$R2 1891
3 TraesCS3B01G279600 chr3A 468539024 468539693 669 True 221 283 82.118 108 800 2 chr3A.!!$R3 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 314 0.108138 ACATCTTGCCGGAGCTGTAC 60.108 55.000 5.05 0.0 40.8 2.90 F
1217 1259 1.070445 CTGTCAGGAGGATGGATCTGC 59.930 57.143 0.00 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 1931 1.202348 GGTGGCATGCAAGTAGGTTTC 59.798 52.381 21.36 0.0 0.00 2.78 R
2634 2689 0.179065 CATTGCTCAGCCTCGATGGA 60.179 55.000 0.00 0.0 38.35 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.899437 AATTTCCTCGCCTCCGCTCA 61.899 55.000 0.00 0.00 0.00 4.26
39 40 2.359169 CCGCTCAAGCCACTCCCTA 61.359 63.158 0.00 0.00 37.91 3.53
79 80 2.112475 TTGTTTGTGCATTTCGTCCG 57.888 45.000 0.00 0.00 0.00 4.79
166 168 7.144661 CCAATGTAACATTGTTTCAAGCACTA 58.855 34.615 12.06 0.00 0.00 2.74
180 183 9.495754 GTTTCAAGCACTATTTTATAAGCTCAG 57.504 33.333 0.00 0.00 0.00 3.35
198 201 2.241176 TCAGTGGTGTTCCTTTCCTTGT 59.759 45.455 0.00 0.00 34.23 3.16
268 271 5.102020 TGGTTCATAACATGTTTGACACG 57.898 39.130 17.78 0.00 0.00 4.49
287 290 7.592012 GACACGTAAAATGTCGTAGATAGAG 57.408 40.000 0.00 0.00 40.67 2.43
308 314 0.108138 ACATCTTGCCGGAGCTGTAC 60.108 55.000 5.05 0.00 40.80 2.90
321 327 3.686726 GGAGCTGTACCTTTGTCAATCTG 59.313 47.826 0.00 0.00 0.00 2.90
327 333 5.680619 TGTACCTTTGTCAATCTGAAGTGT 58.319 37.500 0.00 0.00 0.00 3.55
331 337 7.639113 ACCTTTGTCAATCTGAAGTGTAAAA 57.361 32.000 0.00 0.00 0.00 1.52
376 382 2.703536 TGGGTGTTGCTGAGTCTCTTTA 59.296 45.455 0.65 0.00 0.00 1.85
387 393 5.347364 GCTGAGTCTCTTTAGTACAGCAAAG 59.653 44.000 0.00 2.14 45.33 2.77
410 416 1.180029 CCCCTTGTTCTTCCTGCATG 58.820 55.000 0.00 0.00 0.00 4.06
412 418 1.815003 CCCTTGTTCTTCCTGCATGAC 59.185 52.381 0.00 0.00 0.00 3.06
485 491 8.261522 ACCATGAGAAGACTAAAGTTCCTAATC 58.738 37.037 0.00 0.00 0.00 1.75
487 493 9.311916 CATGAGAAGACTAAAGTTCCTAATCAG 57.688 37.037 0.00 0.00 0.00 2.90
508 519 2.622942 GTGGGCAACAGTTTGATTGAGA 59.377 45.455 0.00 0.00 34.24 3.27
509 520 2.886523 TGGGCAACAGTTTGATTGAGAG 59.113 45.455 0.00 0.00 34.24 3.20
510 521 2.887152 GGGCAACAGTTTGATTGAGAGT 59.113 45.455 0.00 0.00 34.24 3.24
511 522 3.304928 GGGCAACAGTTTGATTGAGAGTG 60.305 47.826 0.00 0.00 34.24 3.51
512 523 3.316308 GGCAACAGTTTGATTGAGAGTGT 59.684 43.478 0.00 0.00 34.24 3.55
513 524 4.285292 GCAACAGTTTGATTGAGAGTGTG 58.715 43.478 0.00 0.00 34.24 3.82
515 526 5.007626 GCAACAGTTTGATTGAGAGTGTGTA 59.992 40.000 0.00 0.00 34.24 2.90
518 529 5.755375 ACAGTTTGATTGAGAGTGTGTAGTG 59.245 40.000 0.00 0.00 0.00 2.74
521 532 6.480320 AGTTTGATTGAGAGTGTGTAGTGAAC 59.520 38.462 0.00 0.00 0.00 3.18
522 533 5.529581 TGATTGAGAGTGTGTAGTGAACA 57.470 39.130 0.00 0.00 35.06 3.18
523 534 5.912892 TGATTGAGAGTGTGTAGTGAACAA 58.087 37.500 0.00 0.00 40.63 2.83
609 628 1.883926 ACATTTTTGTACCCTGACCGC 59.116 47.619 0.00 0.00 0.00 5.68
624 643 3.213506 TGACCGCTTCATATGGATTTGG 58.786 45.455 2.13 0.00 0.00 3.28
683 702 3.965258 ACAGTCCCCCATGCGCAA 61.965 61.111 17.11 0.00 0.00 4.85
743 768 2.006888 CATACCACAAGCCTACAACCG 58.993 52.381 0.00 0.00 0.00 4.44
855 897 1.262640 TAGGGAAACGAGGGGAGCAC 61.263 60.000 0.00 0.00 0.00 4.40
946 988 5.505173 TCTTTCTTTTCAGCAAAGGTCTG 57.495 39.130 0.00 0.00 42.18 3.51
979 1021 5.407084 TGAGATGCAAGCACATTTGATTTTG 59.593 36.000 0.00 0.00 0.00 2.44
1217 1259 1.070445 CTGTCAGGAGGATGGATCTGC 59.930 57.143 0.00 0.00 0.00 4.26
1408 1450 4.497473 TGTTTACTTGGAGGAAAATGCG 57.503 40.909 0.00 0.00 0.00 4.73
1530 1576 3.385755 ACTTGCTTTGTTCTTCTGGCATT 59.614 39.130 0.00 0.00 0.00 3.56
1659 1708 3.192844 GGATACTGAACACGAGACTCCAA 59.807 47.826 0.00 0.00 0.00 3.53
1705 1755 7.159437 TGACGTAAACATTTTGCAAATCTTG 57.841 32.000 13.65 13.21 0.00 3.02
1724 1776 8.638685 AATCTTGTCATCAGTTTCAGTTTTTG 57.361 30.769 0.00 0.00 0.00 2.44
1726 1778 7.601856 TCTTGTCATCAGTTTCAGTTTTTGTT 58.398 30.769 0.00 0.00 0.00 2.83
1727 1779 7.754924 TCTTGTCATCAGTTTCAGTTTTTGTTC 59.245 33.333 0.00 0.00 0.00 3.18
1858 1910 4.852134 TGTTCCACAATCCTGTTCATTG 57.148 40.909 0.00 0.00 37.29 2.82
1922 1974 6.040054 ACCTTTTCTTTTAGCGCTTTCCTTTA 59.960 34.615 18.68 0.00 0.00 1.85
1935 1987 5.405269 CGCTTTCCTTTAAAGTTGGGATTTG 59.595 40.000 14.03 0.00 45.46 2.32
1939 1991 6.168270 TCCTTTAAAGTTGGGATTTGTTGG 57.832 37.500 14.03 0.00 0.00 3.77
1958 2010 8.696410 TTGTTGGTGAAATACTCTTTGTTTTC 57.304 30.769 0.00 0.00 0.00 2.29
2020 2072 3.780902 TGTATGCGAGTGGTCATACAAG 58.219 45.455 14.97 0.00 46.82 3.16
2209 2261 0.756442 TGGCAGCTCTTGTTTGGCTT 60.756 50.000 0.00 0.00 38.14 4.35
2218 2270 1.377366 TTGTTTGGCTTCACGGCGAA 61.377 50.000 16.62 0.00 42.02 4.70
2254 2306 1.129326 CTATCGTTCGGTCATTCGCC 58.871 55.000 0.00 0.00 0.00 5.54
2257 2309 2.267961 GTTCGGTCATTCGCCCCT 59.732 61.111 0.00 0.00 0.00 4.79
2282 2334 0.662619 AACTGTGACGTGCATTGGTG 59.337 50.000 0.00 0.00 0.00 4.17
2296 2348 1.996798 TTGGTGTTTTTATGGCCGGA 58.003 45.000 5.05 0.00 0.00 5.14
2319 2371 7.418025 CGGATGGTCTTTCCTAATAGGGATATC 60.418 44.444 6.46 0.00 35.59 1.63
2332 2384 4.974645 AGGGATATCGGCATTCTGTTTA 57.025 40.909 0.00 0.00 0.00 2.01
2368 2420 5.238650 GTGGTTTGTCTTTGCTGTATACTGT 59.761 40.000 10.96 0.00 0.00 3.55
2370 2422 7.119262 GTGGTTTGTCTTTGCTGTATACTGTAT 59.881 37.037 10.96 5.53 0.00 2.29
2378 2430 7.764443 TCTTTGCTGTATACTGTATGAAAGGTC 59.236 37.037 10.51 0.00 0.00 3.85
2404 2456 3.559655 TGTGCTGATATTACATTGCGACC 59.440 43.478 0.00 0.00 0.00 4.79
2410 2462 2.102070 ATTACATTGCGACCGAACCA 57.898 45.000 0.00 0.00 0.00 3.67
2412 2464 1.017177 TACATTGCGACCGAACCAGC 61.017 55.000 0.00 0.00 0.00 4.85
2413 2465 2.031919 ATTGCGACCGAACCAGCA 59.968 55.556 0.00 0.00 37.89 4.41
2438 2491 8.526147 CAAGGAATTGTGGAAATAATCTGTCTT 58.474 33.333 0.00 0.00 0.00 3.01
2479 2532 5.062308 GCTCGTGATTATTCGTCTGAAACTT 59.938 40.000 0.00 0.00 37.71 2.66
2623 2678 2.083774 GATGTCATTTGGTTCAGGCGA 58.916 47.619 0.00 0.00 0.00 5.54
2664 2735 3.243839 GGCTGAGCAATGTTTCTTTTCCA 60.244 43.478 6.82 0.00 0.00 3.53
2670 2741 7.218614 TGAGCAATGTTTCTTTTCCATGAAAT 58.781 30.769 0.00 0.00 35.13 2.17
2683 2754 9.565090 CTTTTCCATGAAATACAGAGGATATGA 57.435 33.333 0.00 0.00 36.81 2.15
2685 2756 9.565090 TTTCCATGAAATACAGAGGATATGAAG 57.435 33.333 0.00 0.00 36.81 3.02
2692 2763 9.213799 GAAATACAGAGGATATGAAGTCATTCC 57.786 37.037 0.00 6.73 37.76 3.01
2703 2774 8.871629 ATATGAAGTCATTCCTATACGAGTCT 57.128 34.615 0.00 0.00 37.76 3.24
2737 2814 7.745620 TTCTTTTCCTTGAAATACAGAGGAC 57.254 36.000 0.00 0.00 36.40 3.85
2749 2826 8.048514 TGAAATACAGAGGACATGAATCAATCA 58.951 33.333 0.00 0.00 43.67 2.57
2764 2841 8.442632 TGAATCAATCATGTCCTACAGAAATC 57.557 34.615 0.00 0.00 31.50 2.17
2771 2865 4.993705 TGTCCTACAGAAATCAAAGGGT 57.006 40.909 0.00 0.00 0.00 4.34
2774 2868 4.700692 GTCCTACAGAAATCAAAGGGTTCC 59.299 45.833 0.00 0.00 0.00 3.62
2781 2875 5.009610 CAGAAATCAAAGGGTTCCGAAGAAA 59.990 40.000 0.00 0.00 32.58 2.52
2783 2877 5.391312 AATCAAAGGGTTCCGAAGAAATG 57.609 39.130 0.00 0.00 32.58 2.32
2787 2881 5.128008 TCAAAGGGTTCCGAAGAAATGTTTT 59.872 36.000 0.00 0.00 32.58 2.43
2793 2887 5.239963 GGTTCCGAAGAAATGTTTTCCTACA 59.760 40.000 0.00 0.00 32.58 2.74
2794 2888 6.371389 GTTCCGAAGAAATGTTTTCCTACAG 58.629 40.000 0.00 0.00 32.58 2.74
2801 2895 9.965824 GAAGAAATGTTTTCCTACAGAAATCAA 57.034 29.630 3.76 0.00 43.77 2.57
2807 2901 8.924511 TGTTTTCCTACAGAAATCAAATCTCT 57.075 30.769 0.00 0.00 43.93 3.10
2847 2944 7.484975 ACAAAATTCATGTAAACCAAACGAGA 58.515 30.769 0.00 0.00 0.00 4.04
2882 2979 3.209410 CATAGGGAAGATGAAGCCACAC 58.791 50.000 0.00 0.00 0.00 3.82
2921 3018 3.117398 TGCCTGCCCAATCTATTCAGAAT 60.117 43.478 0.20 0.20 33.50 2.40
2945 3042 7.467557 TGATTTTCATGTTTTTCTCTGTTGC 57.532 32.000 0.00 0.00 0.00 4.17
2948 3045 2.293122 TCATGTTTTTCTCTGTTGCCCG 59.707 45.455 0.00 0.00 0.00 6.13
2958 3055 1.002624 TGTTGCCCGATCTTGTCCC 60.003 57.895 0.00 0.00 0.00 4.46
2965 3062 1.140852 CCCGATCTTGTCCCTATGCAA 59.859 52.381 0.00 0.00 0.00 4.08
2982 3085 1.376424 AAGCGTCTGGCCATGTGAG 60.376 57.895 5.51 0.00 45.17 3.51
2999 3103 1.548973 GAGTGTGCGTCGTCCTGTTG 61.549 60.000 0.00 0.00 0.00 3.33
3034 3138 1.225704 GGGCCAGAAGAGTCATGGG 59.774 63.158 4.39 0.00 34.52 4.00
3037 3141 1.274703 GCCAGAAGAGTCATGGGGGA 61.275 60.000 10.12 0.00 34.52 4.81
3040 3144 2.041620 CCAGAAGAGTCATGGGGGAAAA 59.958 50.000 0.00 0.00 0.00 2.29
3041 3145 3.309410 CCAGAAGAGTCATGGGGGAAAAT 60.309 47.826 0.00 0.00 0.00 1.82
3042 3146 3.698040 CAGAAGAGTCATGGGGGAAAATG 59.302 47.826 0.00 0.00 0.00 2.32
3043 3147 2.834638 AGAGTCATGGGGGAAAATGG 57.165 50.000 0.00 0.00 0.00 3.16
3044 3148 1.288932 AGAGTCATGGGGGAAAATGGG 59.711 52.381 0.00 0.00 0.00 4.00
3045 3149 1.287739 GAGTCATGGGGGAAAATGGGA 59.712 52.381 0.00 0.00 0.00 4.37
3046 3150 1.721691 AGTCATGGGGGAAAATGGGAA 59.278 47.619 0.00 0.00 0.00 3.97
3047 3151 2.113414 AGTCATGGGGGAAAATGGGAAA 59.887 45.455 0.00 0.00 0.00 3.13
3048 3152 2.909662 GTCATGGGGGAAAATGGGAAAA 59.090 45.455 0.00 0.00 0.00 2.29
3049 3153 3.329225 GTCATGGGGGAAAATGGGAAAAA 59.671 43.478 0.00 0.00 0.00 1.94
3050 3154 4.018506 GTCATGGGGGAAAATGGGAAAAAT 60.019 41.667 0.00 0.00 0.00 1.82
3051 3155 4.605371 TCATGGGGGAAAATGGGAAAAATT 59.395 37.500 0.00 0.00 0.00 1.82
3052 3156 4.649267 TGGGGGAAAATGGGAAAAATTC 57.351 40.909 0.00 0.00 0.00 2.17
3053 3157 4.246978 TGGGGGAAAATGGGAAAAATTCT 58.753 39.130 0.00 0.00 0.00 2.40
3054 3158 5.415961 TGGGGGAAAATGGGAAAAATTCTA 58.584 37.500 0.00 0.00 0.00 2.10
3055 3159 5.852250 TGGGGGAAAATGGGAAAAATTCTAA 59.148 36.000 0.00 0.00 0.00 2.10
3056 3160 6.332901 TGGGGGAAAATGGGAAAAATTCTAAA 59.667 34.615 0.00 0.00 0.00 1.85
3057 3161 7.147123 TGGGGGAAAATGGGAAAAATTCTAAAA 60.147 33.333 0.00 0.00 0.00 1.52
3058 3162 7.893302 GGGGGAAAATGGGAAAAATTCTAAAAT 59.107 33.333 0.00 0.00 0.00 1.82
3059 3163 9.967451 GGGGAAAATGGGAAAAATTCTAAAATA 57.033 29.630 0.00 0.00 0.00 1.40
3078 3182 9.931210 CTAAAATAAACCTTGAACTTATAGGCG 57.069 33.333 0.00 0.00 32.08 5.52
3079 3183 8.570068 AAAATAAACCTTGAACTTATAGGCGA 57.430 30.769 0.00 0.00 32.08 5.54
3080 3184 8.570068 AAATAAACCTTGAACTTATAGGCGAA 57.430 30.769 0.00 0.00 32.08 4.70
3081 3185 8.570068 AATAAACCTTGAACTTATAGGCGAAA 57.430 30.769 0.00 0.00 32.08 3.46
3082 3186 6.496338 AAACCTTGAACTTATAGGCGAAAG 57.504 37.500 0.00 0.00 32.08 2.62
3100 3204 6.108097 CGAAAGCTAAATTAGACCCTGAAC 57.892 41.667 3.88 0.00 0.00 3.18
3101 3205 5.875359 CGAAAGCTAAATTAGACCCTGAACT 59.125 40.000 3.88 0.00 0.00 3.01
3102 3206 6.036191 CGAAAGCTAAATTAGACCCTGAACTC 59.964 42.308 3.88 0.00 0.00 3.01
3103 3207 6.628644 AAGCTAAATTAGACCCTGAACTCT 57.371 37.500 3.88 0.00 0.00 3.24
3104 3208 6.228616 AGCTAAATTAGACCCTGAACTCTC 57.771 41.667 3.88 0.00 0.00 3.20
3105 3209 5.721960 AGCTAAATTAGACCCTGAACTCTCA 59.278 40.000 3.88 0.00 0.00 3.27
3106 3210 6.213600 AGCTAAATTAGACCCTGAACTCTCAA 59.786 38.462 3.88 0.00 0.00 3.02
3107 3211 7.051000 GCTAAATTAGACCCTGAACTCTCAAT 58.949 38.462 3.88 0.00 0.00 2.57
3108 3212 7.225734 GCTAAATTAGACCCTGAACTCTCAATC 59.774 40.741 3.88 0.00 0.00 2.67
3109 3213 5.622346 ATTAGACCCTGAACTCTCAATCC 57.378 43.478 0.00 0.00 0.00 3.01
3110 3214 3.197927 AGACCCTGAACTCTCAATCCT 57.802 47.619 0.00 0.00 0.00 3.24
3111 3215 3.525862 AGACCCTGAACTCTCAATCCTT 58.474 45.455 0.00 0.00 0.00 3.36
3112 3216 3.262915 AGACCCTGAACTCTCAATCCTTG 59.737 47.826 0.00 0.00 0.00 3.61
3113 3217 3.251484 ACCCTGAACTCTCAATCCTTGA 58.749 45.455 0.00 0.00 38.17 3.02
3114 3218 3.652869 ACCCTGAACTCTCAATCCTTGAA 59.347 43.478 0.00 0.00 39.58 2.69
3115 3219 4.104738 ACCCTGAACTCTCAATCCTTGAAA 59.895 41.667 0.00 0.00 39.58 2.69
3116 3220 5.222213 ACCCTGAACTCTCAATCCTTGAAAT 60.222 40.000 0.00 0.00 39.58 2.17
3117 3221 5.713861 CCCTGAACTCTCAATCCTTGAAATT 59.286 40.000 0.00 0.00 39.58 1.82
3118 3222 6.349944 CCCTGAACTCTCAATCCTTGAAATTG 60.350 42.308 0.00 0.00 39.58 2.32
3119 3223 6.349944 CCTGAACTCTCAATCCTTGAAATTGG 60.350 42.308 0.00 0.00 39.58 3.16
3120 3224 5.047802 TGAACTCTCAATCCTTGAAATTGGC 60.048 40.000 0.00 0.00 39.58 4.52
3121 3225 4.410099 ACTCTCAATCCTTGAAATTGGCA 58.590 39.130 0.00 0.00 39.58 4.92
3122 3226 4.219288 ACTCTCAATCCTTGAAATTGGCAC 59.781 41.667 0.00 0.00 39.58 5.01
3123 3227 4.151121 TCTCAATCCTTGAAATTGGCACA 58.849 39.130 0.00 0.00 39.58 4.57
3124 3228 4.022068 TCTCAATCCTTGAAATTGGCACAC 60.022 41.667 0.00 0.00 37.36 3.82
3125 3229 3.006752 TCAATCCTTGAAATTGGCACACC 59.993 43.478 0.00 0.00 35.25 4.16
3126 3230 5.480331 TCAATCCTTGAAATTGGCACACCA 61.480 41.667 0.00 0.00 39.76 4.17
3137 3241 3.902881 TGGCACACCAAACTTTTTGAT 57.097 38.095 0.09 0.00 45.37 2.57
3138 3242 3.791245 TGGCACACCAAACTTTTTGATC 58.209 40.909 0.09 0.00 45.37 2.92
3139 3243 3.130633 GGCACACCAAACTTTTTGATCC 58.869 45.455 0.09 0.00 35.26 3.36
3140 3244 3.130633 GCACACCAAACTTTTTGATCCC 58.869 45.455 0.09 0.00 0.00 3.85
3141 3245 3.380142 CACACCAAACTTTTTGATCCCG 58.620 45.455 0.09 0.00 0.00 5.14
3142 3246 2.364002 ACACCAAACTTTTTGATCCCGG 59.636 45.455 0.00 0.00 0.00 5.73
3143 3247 2.364002 CACCAAACTTTTTGATCCCGGT 59.636 45.455 0.00 0.00 0.00 5.28
3144 3248 2.626266 ACCAAACTTTTTGATCCCGGTC 59.374 45.455 0.00 0.00 0.00 4.79
3145 3249 2.890945 CCAAACTTTTTGATCCCGGTCT 59.109 45.455 0.00 0.00 0.00 3.85
3146 3250 4.076394 CCAAACTTTTTGATCCCGGTCTA 58.924 43.478 0.00 0.00 0.00 2.59
3147 3251 4.705023 CCAAACTTTTTGATCCCGGTCTAT 59.295 41.667 0.00 0.00 0.00 1.98
3148 3252 5.185056 CCAAACTTTTTGATCCCGGTCTATT 59.815 40.000 0.00 0.00 0.00 1.73
3149 3253 6.295067 CCAAACTTTTTGATCCCGGTCTATTT 60.295 38.462 0.00 0.00 0.00 1.40
3150 3254 6.911250 AACTTTTTGATCCCGGTCTATTTT 57.089 33.333 0.00 0.00 0.00 1.82
3151 3255 6.267496 ACTTTTTGATCCCGGTCTATTTTG 57.733 37.500 0.00 0.00 0.00 2.44
3152 3256 6.007703 ACTTTTTGATCCCGGTCTATTTTGA 58.992 36.000 0.00 0.00 0.00 2.69
3153 3257 6.492087 ACTTTTTGATCCCGGTCTATTTTGAA 59.508 34.615 0.00 0.00 0.00 2.69
3154 3258 5.890424 TTTGATCCCGGTCTATTTTGAAC 57.110 39.130 0.00 0.00 0.00 3.18
3155 3259 3.881220 TGATCCCGGTCTATTTTGAACC 58.119 45.455 0.00 0.00 0.00 3.62
3156 3260 3.521937 TGATCCCGGTCTATTTTGAACCT 59.478 43.478 0.00 0.00 0.00 3.50
3157 3261 4.018779 TGATCCCGGTCTATTTTGAACCTT 60.019 41.667 0.00 0.00 0.00 3.50
3158 3262 5.190132 TGATCCCGGTCTATTTTGAACCTTA 59.810 40.000 0.00 0.00 0.00 2.69
3159 3263 5.093849 TCCCGGTCTATTTTGAACCTTAG 57.906 43.478 0.00 0.00 0.00 2.18
3160 3264 4.778958 TCCCGGTCTATTTTGAACCTTAGA 59.221 41.667 0.00 0.00 0.00 2.10
3161 3265 5.105064 TCCCGGTCTATTTTGAACCTTAGAG 60.105 44.000 0.00 0.00 0.00 2.43
3162 3266 5.116882 CCGGTCTATTTTGAACCTTAGAGG 58.883 45.833 0.00 0.00 42.49 3.69
3163 3267 5.105064 CCGGTCTATTTTGAACCTTAGAGGA 60.105 44.000 0.07 0.00 37.67 3.71
3164 3268 6.408206 CCGGTCTATTTTGAACCTTAGAGGAT 60.408 42.308 0.07 0.00 37.67 3.24
3165 3269 7.048512 CGGTCTATTTTGAACCTTAGAGGATT 58.951 38.462 0.07 0.00 37.67 3.01
3166 3270 7.553044 CGGTCTATTTTGAACCTTAGAGGATTT 59.447 37.037 0.07 0.00 37.67 2.17
3167 3271 9.901172 GGTCTATTTTGAACCTTAGAGGATTTA 57.099 33.333 0.07 0.00 37.67 1.40
3169 3273 9.614792 TCTATTTTGAACCTTAGAGGATTTAGC 57.385 33.333 0.07 0.00 37.67 3.09
3170 3274 9.620259 CTATTTTGAACCTTAGAGGATTTAGCT 57.380 33.333 0.07 0.00 37.67 3.32
3171 3275 7.687941 TTTTGAACCTTAGAGGATTTAGCTG 57.312 36.000 0.00 0.00 37.67 4.24
3172 3276 5.359194 TGAACCTTAGAGGATTTAGCTGG 57.641 43.478 0.00 0.00 37.67 4.85
3173 3277 4.783227 TGAACCTTAGAGGATTTAGCTGGT 59.217 41.667 0.00 0.00 37.67 4.00
3174 3278 5.962031 TGAACCTTAGAGGATTTAGCTGGTA 59.038 40.000 0.00 0.00 37.67 3.25
3175 3279 6.615726 TGAACCTTAGAGGATTTAGCTGGTAT 59.384 38.462 0.00 0.00 37.67 2.73
3176 3280 7.127339 TGAACCTTAGAGGATTTAGCTGGTATT 59.873 37.037 0.00 0.00 37.67 1.89
3177 3281 7.068686 ACCTTAGAGGATTTAGCTGGTATTC 57.931 40.000 0.00 0.00 37.67 1.75
3178 3282 6.159988 CCTTAGAGGATTTAGCTGGTATTCG 58.840 44.000 0.00 0.00 37.67 3.34
3179 3283 3.996480 AGAGGATTTAGCTGGTATTCGC 58.004 45.455 0.00 0.00 0.00 4.70
3180 3284 3.643792 AGAGGATTTAGCTGGTATTCGCT 59.356 43.478 0.00 0.00 40.15 4.93
3181 3285 3.991121 GAGGATTTAGCTGGTATTCGCTC 59.009 47.826 0.00 0.00 37.68 5.03
3182 3286 3.388024 AGGATTTAGCTGGTATTCGCTCA 59.612 43.478 0.00 0.00 37.68 4.26
3183 3287 4.127171 GGATTTAGCTGGTATTCGCTCAA 58.873 43.478 0.00 0.00 37.68 3.02
3184 3288 4.757149 GGATTTAGCTGGTATTCGCTCAAT 59.243 41.667 0.00 0.00 37.68 2.57
3185 3289 5.239525 GGATTTAGCTGGTATTCGCTCAATT 59.760 40.000 0.00 0.00 37.68 2.32
3186 3290 5.484173 TTTAGCTGGTATTCGCTCAATTG 57.516 39.130 0.00 0.00 37.68 2.32
3187 3291 2.292267 AGCTGGTATTCGCTCAATTGG 58.708 47.619 5.42 0.00 0.00 3.16
3188 3292 1.334869 GCTGGTATTCGCTCAATTGGG 59.665 52.381 5.42 2.47 0.00 4.12
3189 3293 1.334869 CTGGTATTCGCTCAATTGGGC 59.665 52.381 20.85 20.85 0.00 5.36
3190 3294 1.064758 TGGTATTCGCTCAATTGGGCT 60.065 47.619 27.02 12.03 0.00 5.19
3191 3295 1.334869 GGTATTCGCTCAATTGGGCTG 59.665 52.381 27.02 19.78 0.00 4.85
3192 3296 1.334869 GTATTCGCTCAATTGGGCTGG 59.665 52.381 27.02 13.40 0.00 4.85
3193 3297 1.669999 ATTCGCTCAATTGGGCTGGC 61.670 55.000 27.02 12.08 0.00 4.85
3194 3298 3.830192 CGCTCAATTGGGCTGGCC 61.830 66.667 27.02 14.23 0.00 5.36
3206 3310 2.364972 GGCTGGCCCATTTATGTAGT 57.635 50.000 0.00 0.00 0.00 2.73
3207 3311 2.230660 GGCTGGCCCATTTATGTAGTC 58.769 52.381 0.00 0.00 0.00 2.59
3208 3312 1.873591 GCTGGCCCATTTATGTAGTCG 59.126 52.381 0.00 0.00 0.00 4.18
3209 3313 1.873591 CTGGCCCATTTATGTAGTCGC 59.126 52.381 0.00 0.00 0.00 5.19
3210 3314 1.488812 TGGCCCATTTATGTAGTCGCT 59.511 47.619 0.00 0.00 0.00 4.93
3211 3315 2.143925 GGCCCATTTATGTAGTCGCTC 58.856 52.381 0.00 0.00 0.00 5.03
3212 3316 1.792949 GCCCATTTATGTAGTCGCTCG 59.207 52.381 0.00 0.00 0.00 5.03
3213 3317 1.792949 CCCATTTATGTAGTCGCTCGC 59.207 52.381 0.00 0.00 0.00 5.03
3214 3318 1.452025 CCATTTATGTAGTCGCTCGCG 59.548 52.381 0.00 0.00 41.35 5.87
3215 3319 1.129326 ATTTATGTAGTCGCTCGCGC 58.871 50.000 0.00 0.00 39.59 6.86
3216 3320 0.099968 TTTATGTAGTCGCTCGCGCT 59.900 50.000 5.56 9.56 39.59 5.92
3217 3321 0.591488 TTATGTAGTCGCTCGCGCTG 60.591 55.000 5.56 0.00 39.59 5.18
3218 3322 2.983761 TATGTAGTCGCTCGCGCTGC 62.984 60.000 5.56 9.15 39.59 5.25
3219 3323 4.838486 GTAGTCGCTCGCGCTGCT 62.838 66.667 18.55 7.17 39.59 4.24
3220 3324 4.538283 TAGTCGCTCGCGCTGCTC 62.538 66.667 18.55 12.55 39.59 4.26
3226 3330 2.740055 CTCGCGCTGCTCTGGTTT 60.740 61.111 5.56 0.00 0.00 3.27
3227 3331 2.280797 TCGCGCTGCTCTGGTTTT 60.281 55.556 5.56 0.00 0.00 2.43
3228 3332 2.174349 CGCGCTGCTCTGGTTTTC 59.826 61.111 5.56 0.00 0.00 2.29
3229 3333 2.563427 GCGCTGCTCTGGTTTTCC 59.437 61.111 0.00 0.00 41.14 3.13
3230 3334 1.968540 GCGCTGCTCTGGTTTTCCT 60.969 57.895 0.00 0.00 41.38 3.36
3231 3335 1.518903 GCGCTGCTCTGGTTTTCCTT 61.519 55.000 0.00 0.00 41.38 3.36
3232 3336 0.954452 CGCTGCTCTGGTTTTCCTTT 59.046 50.000 0.00 0.00 41.38 3.11
3233 3337 1.335324 CGCTGCTCTGGTTTTCCTTTG 60.335 52.381 0.00 0.00 41.38 2.77
3234 3338 1.683385 GCTGCTCTGGTTTTCCTTTGT 59.317 47.619 0.00 0.00 41.38 2.83
3235 3339 2.101415 GCTGCTCTGGTTTTCCTTTGTT 59.899 45.455 0.00 0.00 41.38 2.83
3236 3340 3.430790 GCTGCTCTGGTTTTCCTTTGTTT 60.431 43.478 0.00 0.00 41.38 2.83
3237 3341 4.758688 CTGCTCTGGTTTTCCTTTGTTTT 58.241 39.130 0.00 0.00 41.38 2.43
3238 3342 5.159273 TGCTCTGGTTTTCCTTTGTTTTT 57.841 34.783 0.00 0.00 41.38 1.94
3276 3380 5.346181 TTTTTCTTTGGGTTTTCATCGGT 57.654 34.783 0.00 0.00 0.00 4.69
3277 3381 5.346181 TTTTCTTTGGGTTTTCATCGGTT 57.654 34.783 0.00 0.00 0.00 4.44
3278 3382 5.346181 TTTCTTTGGGTTTTCATCGGTTT 57.654 34.783 0.00 0.00 0.00 3.27
3279 3383 5.346181 TTCTTTGGGTTTTCATCGGTTTT 57.654 34.783 0.00 0.00 0.00 2.43
3280 3384 4.939271 TCTTTGGGTTTTCATCGGTTTTC 58.061 39.130 0.00 0.00 0.00 2.29
3281 3385 4.647399 TCTTTGGGTTTTCATCGGTTTTCT 59.353 37.500 0.00 0.00 0.00 2.52
3282 3386 5.128008 TCTTTGGGTTTTCATCGGTTTTCTT 59.872 36.000 0.00 0.00 0.00 2.52
3283 3387 5.346181 TTGGGTTTTCATCGGTTTTCTTT 57.654 34.783 0.00 0.00 0.00 2.52
3284 3388 5.346181 TGGGTTTTCATCGGTTTTCTTTT 57.654 34.783 0.00 0.00 0.00 2.27
3285 3389 5.112686 TGGGTTTTCATCGGTTTTCTTTTG 58.887 37.500 0.00 0.00 0.00 2.44
3286 3390 5.113383 GGGTTTTCATCGGTTTTCTTTTGT 58.887 37.500 0.00 0.00 0.00 2.83
3287 3391 5.583061 GGGTTTTCATCGGTTTTCTTTTGTT 59.417 36.000 0.00 0.00 0.00 2.83
3288 3392 6.092944 GGGTTTTCATCGGTTTTCTTTTGTTT 59.907 34.615 0.00 0.00 0.00 2.83
3289 3393 7.361371 GGGTTTTCATCGGTTTTCTTTTGTTTT 60.361 33.333 0.00 0.00 0.00 2.43
3290 3394 8.018520 GGTTTTCATCGGTTTTCTTTTGTTTTT 58.981 29.630 0.00 0.00 0.00 1.94
3332 3436 6.604735 TTTTCTCTGGTTTCTCTTTCTTCG 57.395 37.500 0.00 0.00 0.00 3.79
3333 3437 4.939052 TCTCTGGTTTCTCTTTCTTCGT 57.061 40.909 0.00 0.00 0.00 3.85
3334 3438 5.277857 TCTCTGGTTTCTCTTTCTTCGTT 57.722 39.130 0.00 0.00 0.00 3.85
3335 3439 6.401047 TCTCTGGTTTCTCTTTCTTCGTTA 57.599 37.500 0.00 0.00 0.00 3.18
3336 3440 6.994221 TCTCTGGTTTCTCTTTCTTCGTTAT 58.006 36.000 0.00 0.00 0.00 1.89
3337 3441 8.118976 TCTCTGGTTTCTCTTTCTTCGTTATA 57.881 34.615 0.00 0.00 0.00 0.98
3338 3442 8.027771 TCTCTGGTTTCTCTTTCTTCGTTATAC 58.972 37.037 0.00 0.00 0.00 1.47
3339 3443 7.893658 TCTGGTTTCTCTTTCTTCGTTATACT 58.106 34.615 0.00 0.00 0.00 2.12
3340 3444 8.365647 TCTGGTTTCTCTTTCTTCGTTATACTT 58.634 33.333 0.00 0.00 0.00 2.24
3341 3445 8.897872 TGGTTTCTCTTTCTTCGTTATACTTT 57.102 30.769 0.00 0.00 0.00 2.66
3342 3446 9.333724 TGGTTTCTCTTTCTTCGTTATACTTTT 57.666 29.630 0.00 0.00 0.00 2.27
3380 3484 9.695884 TTTTTCTTCATATTGTTTGTTTTTCGC 57.304 25.926 0.00 0.00 0.00 4.70
3381 3485 8.641499 TTTCTTCATATTGTTTGTTTTTCGCT 57.359 26.923 0.00 0.00 0.00 4.93
3382 3486 8.641499 TTCTTCATATTGTTTGTTTTTCGCTT 57.359 26.923 0.00 0.00 0.00 4.68
3383 3487 8.641499 TCTTCATATTGTTTGTTTTTCGCTTT 57.359 26.923 0.00 0.00 0.00 3.51
3384 3488 9.092876 TCTTCATATTGTTTGTTTTTCGCTTTT 57.907 25.926 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.793946 CGAGGAAATTGCGCCCAG 59.206 61.111 4.18 0.00 0.00 4.45
1 2 3.439540 GCGAGGAAATTGCGCCCA 61.440 61.111 4.18 0.00 44.55 5.36
5 6 2.813179 CGGAGGCGAGGAAATTGCG 61.813 63.158 0.00 0.00 39.48 4.85
6 7 3.102097 CGGAGGCGAGGAAATTGC 58.898 61.111 0.00 0.00 37.62 3.56
7 8 1.432270 GAGCGGAGGCGAGGAAATTG 61.432 60.000 0.00 0.00 46.35 2.32
8 9 1.153349 GAGCGGAGGCGAGGAAATT 60.153 57.895 0.00 0.00 46.35 1.82
9 10 1.899437 TTGAGCGGAGGCGAGGAAAT 61.899 55.000 0.00 0.00 46.35 2.17
10 11 2.507110 CTTGAGCGGAGGCGAGGAAA 62.507 60.000 0.00 0.00 46.35 3.13
11 12 2.994995 TTGAGCGGAGGCGAGGAA 60.995 61.111 0.00 0.00 46.35 3.36
27 28 2.043252 AGACTGTAGTAGGGAGTGGCTT 59.957 50.000 0.00 0.00 0.00 4.35
39 40 0.896019 ACGCAGGAGCAGACTGTAGT 60.896 55.000 3.99 0.00 42.27 2.73
79 80 3.123620 CTGCTTCAGCCAGCCGTC 61.124 66.667 0.00 0.00 39.25 4.79
166 168 6.485171 AGGAACACCACTGAGCTTATAAAAT 58.515 36.000 0.00 0.00 0.00 1.82
180 183 2.650322 TGACAAGGAAAGGAACACCAC 58.350 47.619 0.00 0.00 0.00 4.16
198 201 8.620116 TGTTGAACAACATAAGATCAGATTGA 57.380 30.769 15.04 0.00 45.42 2.57
280 283 3.823873 CTCCGGCAAGATGTACTCTATCT 59.176 47.826 0.00 0.00 36.49 1.98
287 290 0.108138 ACAGCTCCGGCAAGATGTAC 60.108 55.000 11.97 0.00 43.67 2.90
331 337 9.271828 CCAATTAACCACAAGAAGCTTAAATTT 57.728 29.630 0.00 0.00 0.00 1.82
333 339 7.016170 ACCCAATTAACCACAAGAAGCTTAAAT 59.984 33.333 0.00 0.00 0.00 1.40
355 361 1.131638 AAGAGACTCAGCAACACCCA 58.868 50.000 5.02 0.00 0.00 4.51
376 382 3.137728 ACAAGGGGTAACTTTGCTGTACT 59.862 43.478 0.00 0.00 35.46 2.73
387 393 2.160205 GCAGGAAGAACAAGGGGTAAC 58.840 52.381 0.00 0.00 0.00 2.50
410 416 4.786425 AGCCTATCCCTTTTCATCTTGTC 58.214 43.478 0.00 0.00 0.00 3.18
412 418 6.654161 CAGATAGCCTATCCCTTTTCATCTTG 59.346 42.308 8.12 0.00 35.79 3.02
485 491 2.361757 TCAATCAAACTGTTGCCCACTG 59.638 45.455 0.00 0.00 34.50 3.66
487 493 2.622942 TCTCAATCAAACTGTTGCCCAC 59.377 45.455 0.00 0.00 34.50 4.61
508 519 7.801716 ATTACATTGTTGTTCACTACACACT 57.198 32.000 0.00 0.00 36.21 3.55
509 520 8.126074 TCAATTACATTGTTGTTCACTACACAC 58.874 33.333 0.00 0.00 41.02 3.82
510 521 8.214721 TCAATTACATTGTTGTTCACTACACA 57.785 30.769 0.00 0.00 41.02 3.72
511 522 9.509855 TTTCAATTACATTGTTGTTCACTACAC 57.490 29.630 0.00 0.00 41.02 2.90
609 628 8.252417 TCAACAACATTCCAAATCCATATGAAG 58.748 33.333 3.65 0.00 0.00 3.02
624 643 7.948278 ACAGAGTAGTACTTCAACAACATTC 57.052 36.000 0.00 0.00 0.00 2.67
683 702 6.959639 TTTTCTTAGTTCTTGCTTGGTCAT 57.040 33.333 0.00 0.00 0.00 3.06
711 736 6.263842 AGGCTTGTGGTATGTCATTTCATATG 59.736 38.462 0.00 0.00 33.68 1.78
743 768 7.031226 TGCAATGATTCCACTCTATTTAAGC 57.969 36.000 0.00 0.00 0.00 3.09
946 988 1.269102 GCTTGCATCTCATGACCATGC 60.269 52.381 21.01 21.01 42.81 4.06
979 1021 7.521509 ACATTAGTGCTCGTTGAACTTATAC 57.478 36.000 0.00 0.00 35.75 1.47
1217 1259 1.631405 TGAACCAGCAAAATCCAGGG 58.369 50.000 0.00 0.00 0.00 4.45
1486 1532 8.740906 CAAGTTACCTCACAGATACTTTAGAGA 58.259 37.037 0.00 0.00 0.00 3.10
1530 1576 7.889873 TTTAAAATGGTCTTTCAAGGACAGA 57.110 32.000 1.60 0.00 35.61 3.41
1571 1617 5.407502 TGATAGTAAGTCCATGTGTTGACG 58.592 41.667 0.00 0.00 36.61 4.35
1612 1661 5.705441 CCAGCCCATTCGTATAACATAACAT 59.295 40.000 0.00 0.00 0.00 2.71
1659 1708 3.779444 TCCTCTGTCTGTGATAACTGGT 58.221 45.455 0.00 0.00 0.00 4.00
1705 1755 7.475840 AGAGAACAAAAACTGAAACTGATGAC 58.524 34.615 0.00 0.00 0.00 3.06
1858 1910 9.780413 GGTTTCACAGAAGAAAAGATAATGATC 57.220 33.333 0.00 0.00 39.05 2.92
1871 1923 4.415881 TGCAAGTAGGTTTCACAGAAGA 57.584 40.909 0.00 0.00 0.00 2.87
1879 1931 1.202348 GGTGGCATGCAAGTAGGTTTC 59.798 52.381 21.36 0.00 0.00 2.78
1922 1974 5.428184 TTTCACCAACAAATCCCAACTTT 57.572 34.783 0.00 0.00 0.00 2.66
1935 1987 8.926715 AAGAAAACAAAGAGTATTTCACCAAC 57.073 30.769 0.00 0.00 33.51 3.77
1939 1991 9.185192 CCATGAAGAAAACAAAGAGTATTTCAC 57.815 33.333 0.00 0.00 33.51 3.18
1958 2010 1.531423 AAGCAGCACTGACCATGAAG 58.469 50.000 0.81 0.00 0.00 3.02
2020 2072 1.268743 GCTGTTCCAACTTCTGTGTGC 60.269 52.381 0.00 0.00 0.00 4.57
2209 2261 3.315140 TCCACCCATTCGCCGTGA 61.315 61.111 0.00 0.00 0.00 4.35
2254 2306 1.790623 CACGTCACAGTTACGAAAGGG 59.209 52.381 14.17 0.00 42.90 3.95
2257 2309 1.923899 TGCACGTCACAGTTACGAAA 58.076 45.000 14.17 0.00 42.90 3.46
2282 2334 2.375146 AGACCATCCGGCCATAAAAAC 58.625 47.619 2.24 0.00 34.57 2.43
2296 2348 6.384305 CCGATATCCCTATTAGGAAAGACCAT 59.616 42.308 11.52 0.00 40.04 3.55
2319 2371 5.235186 CCTATCAGAAGTAAACAGAATGCCG 59.765 44.000 0.00 0.00 42.53 5.69
2332 2384 3.910627 AGACAAACCACCCTATCAGAAGT 59.089 43.478 0.00 0.00 0.00 3.01
2368 2420 2.637382 TCAGCACACCAGACCTTTCATA 59.363 45.455 0.00 0.00 0.00 2.15
2370 2422 0.836606 TCAGCACACCAGACCTTTCA 59.163 50.000 0.00 0.00 0.00 2.69
2378 2430 4.553351 CGCAATGTAATATCAGCACACCAG 60.553 45.833 0.00 0.00 0.00 4.00
2404 2456 1.068333 CCACAATTCCTTGCTGGTTCG 60.068 52.381 0.00 0.00 35.69 3.95
2410 2462 6.438425 ACAGATTATTTCCACAATTCCTTGCT 59.562 34.615 0.00 0.00 35.69 3.91
2412 2464 8.059798 AGACAGATTATTTCCACAATTCCTTG 57.940 34.615 0.00 0.00 38.39 3.61
2413 2465 8.526147 CAAGACAGATTATTTCCACAATTCCTT 58.474 33.333 0.00 0.00 0.00 3.36
2438 2491 0.928505 AGCATGGATGAATGGTCCCA 59.071 50.000 0.00 0.00 33.00 4.37
2479 2532 3.221771 AGCAGGTGCAGTGTTTTGATAA 58.778 40.909 4.48 0.00 45.16 1.75
2600 2655 3.084039 GCCTGAACCAAATGACATCTCA 58.916 45.455 0.00 0.00 0.00 3.27
2634 2689 0.179065 CATTGCTCAGCCTCGATGGA 60.179 55.000 0.00 0.00 38.35 3.41
2635 2690 0.463295 ACATTGCTCAGCCTCGATGG 60.463 55.000 0.00 0.00 39.35 3.51
2639 2710 1.446907 AGAAACATTGCTCAGCCTCG 58.553 50.000 0.00 0.00 0.00 4.63
2643 2714 3.981211 TGGAAAAGAAACATTGCTCAGC 58.019 40.909 0.00 0.00 0.00 4.26
2683 2754 5.009210 GCTCAGACTCGTATAGGAATGACTT 59.991 44.000 0.00 0.00 0.00 3.01
2685 2756 4.276183 TGCTCAGACTCGTATAGGAATGAC 59.724 45.833 0.00 0.00 0.00 3.06
2692 2763 6.269315 AGAAACATTGCTCAGACTCGTATAG 58.731 40.000 0.00 0.00 0.00 1.31
2703 2774 5.850557 TCAAGGAAAAGAAACATTGCTCA 57.149 34.783 0.00 0.00 0.00 4.26
2749 2826 5.520748 ACCCTTTGATTTCTGTAGGACAT 57.479 39.130 0.00 0.00 0.00 3.06
2753 2830 3.689649 CGGAACCCTTTGATTTCTGTAGG 59.310 47.826 0.00 0.00 0.00 3.18
2754 2831 4.575885 TCGGAACCCTTTGATTTCTGTAG 58.424 43.478 0.00 0.00 0.00 2.74
2755 2832 4.627284 TCGGAACCCTTTGATTTCTGTA 57.373 40.909 0.00 0.00 0.00 2.74
2756 2833 3.502123 TCGGAACCCTTTGATTTCTGT 57.498 42.857 0.00 0.00 0.00 3.41
2757 2834 4.072131 TCTTCGGAACCCTTTGATTTCTG 58.928 43.478 0.00 0.00 0.00 3.02
2759 2836 5.447624 TTTCTTCGGAACCCTTTGATTTC 57.552 39.130 0.00 0.00 33.18 2.17
2760 2837 5.304357 ACATTTCTTCGGAACCCTTTGATTT 59.696 36.000 0.00 0.00 33.18 2.17
2762 2839 4.407365 ACATTTCTTCGGAACCCTTTGAT 58.593 39.130 0.00 0.00 33.18 2.57
2763 2840 3.827722 ACATTTCTTCGGAACCCTTTGA 58.172 40.909 0.00 0.00 33.18 2.69
2764 2841 4.584327 AACATTTCTTCGGAACCCTTTG 57.416 40.909 0.00 0.00 33.18 2.77
2771 2865 6.292923 TCTGTAGGAAAACATTTCTTCGGAA 58.707 36.000 3.16 0.00 0.00 4.30
2774 2868 8.289618 TGATTTCTGTAGGAAAACATTTCTTCG 58.710 33.333 3.16 0.00 45.56 3.79
2781 2875 9.525826 AGAGATTTGATTTCTGTAGGAAAACAT 57.474 29.630 0.00 0.00 45.56 2.71
2847 2944 5.491078 TCTTCCCTATGTTCCATGTTTAGGT 59.509 40.000 0.00 0.00 0.00 3.08
2863 2960 1.559682 GGTGTGGCTTCATCTTCCCTA 59.440 52.381 0.00 0.00 0.00 3.53
2882 2979 4.202090 GCAGGCAAGAATAGAAAAGGATGG 60.202 45.833 0.00 0.00 0.00 3.51
2921 3018 6.479660 GGCAACAGAGAAAAACATGAAAATCA 59.520 34.615 0.00 0.00 0.00 2.57
2923 3020 5.759763 GGGCAACAGAGAAAAACATGAAAAT 59.240 36.000 0.00 0.00 39.74 1.82
2939 3036 1.026718 GGGACAAGATCGGGCAACAG 61.027 60.000 0.00 0.00 39.74 3.16
2945 3042 0.758734 TGCATAGGGACAAGATCGGG 59.241 55.000 0.00 0.00 0.00 5.14
2948 3045 1.869767 CGCTTGCATAGGGACAAGATC 59.130 52.381 6.91 0.00 44.89 2.75
2958 3055 0.816825 ATGGCCAGACGCTTGCATAG 60.817 55.000 13.05 0.00 37.74 2.23
2965 3062 2.267006 CTCACATGGCCAGACGCT 59.733 61.111 13.05 0.00 37.74 5.07
2982 3085 2.594962 CCAACAGGACGACGCACAC 61.595 63.158 0.00 0.00 0.00 3.82
2999 3103 1.828224 CCCAAATTAGGAGGCGCCC 60.828 63.158 26.15 15.07 37.37 6.13
3052 3156 9.931210 CGCCTATAAGTTCAAGGTTTATTTTAG 57.069 33.333 5.56 0.00 32.67 1.85
3053 3157 9.669887 TCGCCTATAAGTTCAAGGTTTATTTTA 57.330 29.630 5.56 0.00 32.67 1.52
3054 3158 8.570068 TCGCCTATAAGTTCAAGGTTTATTTT 57.430 30.769 5.56 0.00 32.67 1.82
3055 3159 8.570068 TTCGCCTATAAGTTCAAGGTTTATTT 57.430 30.769 5.56 0.00 32.67 1.40
3056 3160 8.570068 TTTCGCCTATAAGTTCAAGGTTTATT 57.430 30.769 5.56 0.00 32.67 1.40
3057 3161 7.201705 GCTTTCGCCTATAAGTTCAAGGTTTAT 60.202 37.037 5.56 0.00 32.67 1.40
3058 3162 6.093082 GCTTTCGCCTATAAGTTCAAGGTTTA 59.907 38.462 5.56 0.00 32.67 2.01
3059 3163 5.106277 GCTTTCGCCTATAAGTTCAAGGTTT 60.106 40.000 5.56 0.00 32.67 3.27
3060 3164 4.395231 GCTTTCGCCTATAAGTTCAAGGTT 59.605 41.667 5.56 0.00 32.67 3.50
3061 3165 3.939592 GCTTTCGCCTATAAGTTCAAGGT 59.060 43.478 5.56 0.00 32.67 3.50
3062 3166 4.192317 AGCTTTCGCCTATAAGTTCAAGG 58.808 43.478 0.00 0.00 36.60 3.61
3063 3167 6.903883 TTAGCTTTCGCCTATAAGTTCAAG 57.096 37.500 0.00 0.00 36.60 3.02
3064 3168 7.859325 ATTTAGCTTTCGCCTATAAGTTCAA 57.141 32.000 0.00 0.00 36.60 2.69
3065 3169 7.859325 AATTTAGCTTTCGCCTATAAGTTCA 57.141 32.000 0.00 0.00 36.60 3.18
3066 3170 9.257651 TCTAATTTAGCTTTCGCCTATAAGTTC 57.742 33.333 0.00 0.00 36.60 3.01
3067 3171 9.043079 GTCTAATTTAGCTTTCGCCTATAAGTT 57.957 33.333 0.00 0.00 36.60 2.66
3068 3172 7.656542 GGTCTAATTTAGCTTTCGCCTATAAGT 59.343 37.037 0.00 0.00 36.60 2.24
3069 3173 7.117956 GGGTCTAATTTAGCTTTCGCCTATAAG 59.882 40.741 0.00 0.00 36.60 1.73
3070 3174 6.932960 GGGTCTAATTTAGCTTTCGCCTATAA 59.067 38.462 0.00 0.00 36.60 0.98
3071 3175 6.269307 AGGGTCTAATTTAGCTTTCGCCTATA 59.731 38.462 0.00 0.00 36.60 1.31
3072 3176 5.071923 AGGGTCTAATTTAGCTTTCGCCTAT 59.928 40.000 0.00 0.00 36.60 2.57
3073 3177 4.407945 AGGGTCTAATTTAGCTTTCGCCTA 59.592 41.667 0.00 0.00 36.60 3.93
3074 3178 3.200165 AGGGTCTAATTTAGCTTTCGCCT 59.800 43.478 0.00 0.00 36.60 5.52
3075 3179 3.312697 CAGGGTCTAATTTAGCTTTCGCC 59.687 47.826 0.00 0.00 36.60 5.54
3076 3180 4.189231 TCAGGGTCTAATTTAGCTTTCGC 58.811 43.478 0.00 0.00 0.00 4.70
3077 3181 5.875359 AGTTCAGGGTCTAATTTAGCTTTCG 59.125 40.000 0.00 0.00 0.00 3.46
3078 3182 7.106890 AGAGTTCAGGGTCTAATTTAGCTTTC 58.893 38.462 0.00 0.00 0.00 2.62
3079 3183 7.021998 AGAGTTCAGGGTCTAATTTAGCTTT 57.978 36.000 0.00 0.00 0.00 3.51
3080 3184 6.213600 TGAGAGTTCAGGGTCTAATTTAGCTT 59.786 38.462 0.00 0.00 0.00 3.74
3081 3185 5.721960 TGAGAGTTCAGGGTCTAATTTAGCT 59.278 40.000 0.00 0.00 0.00 3.32
3082 3186 5.978814 TGAGAGTTCAGGGTCTAATTTAGC 58.021 41.667 0.00 0.00 0.00 3.09
3083 3187 7.713073 GGATTGAGAGTTCAGGGTCTAATTTAG 59.287 40.741 0.00 0.00 34.15 1.85
3084 3188 7.403231 AGGATTGAGAGTTCAGGGTCTAATTTA 59.597 37.037 0.00 0.00 34.15 1.40
3085 3189 6.216456 AGGATTGAGAGTTCAGGGTCTAATTT 59.784 38.462 0.00 0.00 34.15 1.82
3086 3190 5.728741 AGGATTGAGAGTTCAGGGTCTAATT 59.271 40.000 0.00 0.00 34.15 1.40
3087 3191 5.284582 AGGATTGAGAGTTCAGGGTCTAAT 58.715 41.667 0.00 0.00 34.15 1.73
3088 3192 4.689062 AGGATTGAGAGTTCAGGGTCTAA 58.311 43.478 0.00 0.00 34.15 2.10
3089 3193 4.338795 AGGATTGAGAGTTCAGGGTCTA 57.661 45.455 0.00 0.00 34.15 2.59
3090 3194 3.197927 AGGATTGAGAGTTCAGGGTCT 57.802 47.619 0.00 0.00 34.15 3.85
3091 3195 3.990959 AAGGATTGAGAGTTCAGGGTC 57.009 47.619 0.00 0.00 34.15 4.46
3100 3204 8.720311 GGTGTGCCAATTTCAAGGATTGAGAG 62.720 46.154 0.00 0.00 45.25 3.20
3101 3205 7.015866 GGTGTGCCAATTTCAAGGATTGAGA 62.016 44.000 0.00 0.00 45.25 3.27
3102 3206 4.856922 GGTGTGCCAATTTCAAGGATTGAG 60.857 45.833 0.00 0.00 45.25 3.02
3103 3207 3.006752 GGTGTGCCAATTTCAAGGATTGA 59.993 43.478 0.00 0.00 43.91 2.57
3104 3208 3.244146 TGGTGTGCCAATTTCAAGGATTG 60.244 43.478 0.00 0.00 44.90 2.67
3105 3209 2.971330 TGGTGTGCCAATTTCAAGGATT 59.029 40.909 0.00 0.00 42.83 3.01
3106 3210 2.607499 TGGTGTGCCAATTTCAAGGAT 58.393 42.857 0.00 0.00 42.83 3.24
3107 3211 2.079170 TGGTGTGCCAATTTCAAGGA 57.921 45.000 0.00 0.00 42.83 3.36
3117 3221 3.431486 GGATCAAAAAGTTTGGTGTGCCA 60.431 43.478 0.00 0.00 44.38 4.92
3118 3222 3.130633 GGATCAAAAAGTTTGGTGTGCC 58.869 45.455 0.00 0.00 0.00 5.01
3119 3223 3.130633 GGGATCAAAAAGTTTGGTGTGC 58.869 45.455 0.00 0.00 0.00 4.57
3120 3224 3.380142 CGGGATCAAAAAGTTTGGTGTG 58.620 45.455 0.00 0.00 0.00 3.82
3121 3225 2.364002 CCGGGATCAAAAAGTTTGGTGT 59.636 45.455 0.00 0.00 0.00 4.16
3122 3226 2.364002 ACCGGGATCAAAAAGTTTGGTG 59.636 45.455 6.32 0.00 0.00 4.17
3123 3227 2.626266 GACCGGGATCAAAAAGTTTGGT 59.374 45.455 6.32 0.00 0.00 3.67
3124 3228 2.890945 AGACCGGGATCAAAAAGTTTGG 59.109 45.455 6.32 0.00 0.00 3.28
3125 3229 5.897377 ATAGACCGGGATCAAAAAGTTTG 57.103 39.130 6.32 0.00 0.00 2.93
3126 3230 6.911250 AAATAGACCGGGATCAAAAAGTTT 57.089 33.333 6.32 0.00 0.00 2.66
3127 3231 6.492087 TCAAAATAGACCGGGATCAAAAAGTT 59.508 34.615 6.32 0.00 0.00 2.66
3128 3232 6.007703 TCAAAATAGACCGGGATCAAAAAGT 58.992 36.000 6.32 0.00 0.00 2.66
3129 3233 6.509418 TCAAAATAGACCGGGATCAAAAAG 57.491 37.500 6.32 0.00 0.00 2.27
3130 3234 6.294843 GGTTCAAAATAGACCGGGATCAAAAA 60.295 38.462 6.32 0.00 0.00 1.94
3131 3235 5.184287 GGTTCAAAATAGACCGGGATCAAAA 59.816 40.000 6.32 0.00 0.00 2.44
3132 3236 4.703093 GGTTCAAAATAGACCGGGATCAAA 59.297 41.667 6.32 0.00 0.00 2.69
3133 3237 4.018779 AGGTTCAAAATAGACCGGGATCAA 60.019 41.667 6.32 0.00 0.00 2.57
3134 3238 3.521937 AGGTTCAAAATAGACCGGGATCA 59.478 43.478 6.32 0.00 0.00 2.92
3135 3239 4.152284 AGGTTCAAAATAGACCGGGATC 57.848 45.455 6.32 0.00 0.00 3.36
3136 3240 4.586306 AAGGTTCAAAATAGACCGGGAT 57.414 40.909 6.32 0.00 0.00 3.85
3137 3241 4.778958 TCTAAGGTTCAAAATAGACCGGGA 59.221 41.667 6.32 0.00 0.00 5.14
3138 3242 5.093849 TCTAAGGTTCAAAATAGACCGGG 57.906 43.478 6.32 0.00 0.00 5.73
3139 3243 5.105064 TCCTCTAAGGTTCAAAATAGACCGG 60.105 44.000 0.00 0.00 36.53 5.28
3140 3244 5.974108 TCCTCTAAGGTTCAAAATAGACCG 58.026 41.667 0.00 0.00 36.53 4.79
3141 3245 8.809468 AAATCCTCTAAGGTTCAAAATAGACC 57.191 34.615 0.00 0.00 36.53 3.85
3143 3247 9.614792 GCTAAATCCTCTAAGGTTCAAAATAGA 57.385 33.333 0.00 0.00 36.53 1.98
3144 3248 9.620259 AGCTAAATCCTCTAAGGTTCAAAATAG 57.380 33.333 0.00 0.00 36.53 1.73
3145 3249 9.396022 CAGCTAAATCCTCTAAGGTTCAAAATA 57.604 33.333 0.00 0.00 36.53 1.40
3146 3250 7.340487 CCAGCTAAATCCTCTAAGGTTCAAAAT 59.660 37.037 0.00 0.00 36.53 1.82
3147 3251 6.659242 CCAGCTAAATCCTCTAAGGTTCAAAA 59.341 38.462 0.00 0.00 36.53 2.44
3148 3252 6.180472 CCAGCTAAATCCTCTAAGGTTCAAA 58.820 40.000 0.00 0.00 36.53 2.69
3149 3253 5.250774 ACCAGCTAAATCCTCTAAGGTTCAA 59.749 40.000 0.00 0.00 36.53 2.69
3150 3254 4.783227 ACCAGCTAAATCCTCTAAGGTTCA 59.217 41.667 0.00 0.00 36.53 3.18
3151 3255 5.360649 ACCAGCTAAATCCTCTAAGGTTC 57.639 43.478 0.00 0.00 36.53 3.62
3152 3256 7.453141 AATACCAGCTAAATCCTCTAAGGTT 57.547 36.000 0.00 0.00 36.53 3.50
3153 3257 6.239345 CGAATACCAGCTAAATCCTCTAAGGT 60.239 42.308 0.00 0.00 36.53 3.50
3154 3258 6.159988 CGAATACCAGCTAAATCCTCTAAGG 58.840 44.000 0.00 0.00 36.46 2.69
3155 3259 5.635700 GCGAATACCAGCTAAATCCTCTAAG 59.364 44.000 0.00 0.00 0.00 2.18
3156 3260 5.304614 AGCGAATACCAGCTAAATCCTCTAA 59.695 40.000 0.00 0.00 42.60 2.10
3157 3261 4.833380 AGCGAATACCAGCTAAATCCTCTA 59.167 41.667 0.00 0.00 42.60 2.43
3158 3262 3.643792 AGCGAATACCAGCTAAATCCTCT 59.356 43.478 0.00 0.00 42.60 3.69
3159 3263 3.991121 GAGCGAATACCAGCTAAATCCTC 59.009 47.826 0.00 0.00 44.69 3.71
3160 3264 3.388024 TGAGCGAATACCAGCTAAATCCT 59.612 43.478 0.00 0.00 44.69 3.24
3161 3265 3.728845 TGAGCGAATACCAGCTAAATCC 58.271 45.455 0.00 0.00 44.69 3.01
3162 3266 5.931441 ATTGAGCGAATACCAGCTAAATC 57.069 39.130 0.00 0.00 39.67 2.17
3163 3267 5.009010 CCAATTGAGCGAATACCAGCTAAAT 59.991 40.000 7.12 0.00 44.21 1.40
3164 3268 4.335315 CCAATTGAGCGAATACCAGCTAAA 59.665 41.667 7.12 0.00 44.69 1.85
3165 3269 3.876914 CCAATTGAGCGAATACCAGCTAA 59.123 43.478 7.12 0.00 44.69 3.09
3166 3270 3.466836 CCAATTGAGCGAATACCAGCTA 58.533 45.455 7.12 0.00 44.69 3.32
3168 3272 1.334869 CCCAATTGAGCGAATACCAGC 59.665 52.381 7.12 0.00 0.00 4.85
3169 3273 1.334869 GCCCAATTGAGCGAATACCAG 59.665 52.381 7.12 0.00 0.00 4.00
3170 3274 1.064758 AGCCCAATTGAGCGAATACCA 60.065 47.619 7.12 0.00 0.00 3.25
3171 3275 1.334869 CAGCCCAATTGAGCGAATACC 59.665 52.381 7.12 0.00 0.00 2.73
3172 3276 1.334869 CCAGCCCAATTGAGCGAATAC 59.665 52.381 7.12 0.00 0.00 1.89
3173 3277 1.679139 CCAGCCCAATTGAGCGAATA 58.321 50.000 7.12 0.00 0.00 1.75
3174 3278 1.669999 GCCAGCCCAATTGAGCGAAT 61.670 55.000 7.12 0.00 0.00 3.34
3175 3279 2.342650 GCCAGCCCAATTGAGCGAA 61.343 57.895 7.12 0.00 0.00 4.70
3176 3280 2.751436 GCCAGCCCAATTGAGCGA 60.751 61.111 7.12 0.00 0.00 4.93
3177 3281 3.830192 GGCCAGCCCAATTGAGCG 61.830 66.667 7.12 1.94 0.00 5.03
3187 3291 2.230660 GACTACATAAATGGGCCAGCC 58.769 52.381 13.78 0.00 0.00 4.85
3188 3292 1.873591 CGACTACATAAATGGGCCAGC 59.126 52.381 13.78 0.00 0.00 4.85
3189 3293 1.873591 GCGACTACATAAATGGGCCAG 59.126 52.381 13.78 0.00 0.00 4.85
3190 3294 1.488812 AGCGACTACATAAATGGGCCA 59.511 47.619 9.61 9.61 0.00 5.36
3191 3295 2.143925 GAGCGACTACATAAATGGGCC 58.856 52.381 0.00 0.00 0.00 5.80
3192 3296 1.792949 CGAGCGACTACATAAATGGGC 59.207 52.381 0.00 0.00 0.00 5.36
3193 3297 1.792949 GCGAGCGACTACATAAATGGG 59.207 52.381 0.00 0.00 0.00 4.00
3194 3298 1.452025 CGCGAGCGACTACATAAATGG 59.548 52.381 12.58 0.00 42.83 3.16
3195 3299 2.818814 CGCGAGCGACTACATAAATG 57.181 50.000 12.58 0.00 42.83 2.32
3209 3313 2.233007 GAAAACCAGAGCAGCGCGAG 62.233 60.000 12.10 1.41 0.00 5.03
3210 3314 2.280797 AAAACCAGAGCAGCGCGA 60.281 55.556 12.10 0.00 0.00 5.87
3211 3315 2.174349 GAAAACCAGAGCAGCGCG 59.826 61.111 0.00 0.00 0.00 6.86
3212 3316 1.518903 AAGGAAAACCAGAGCAGCGC 61.519 55.000 0.00 0.00 0.00 5.92
3213 3317 0.954452 AAAGGAAAACCAGAGCAGCG 59.046 50.000 0.00 0.00 0.00 5.18
3214 3318 1.683385 ACAAAGGAAAACCAGAGCAGC 59.317 47.619 0.00 0.00 0.00 5.25
3215 3319 4.391405 AAACAAAGGAAAACCAGAGCAG 57.609 40.909 0.00 0.00 0.00 4.24
3216 3320 4.817318 AAAACAAAGGAAAACCAGAGCA 57.183 36.364 0.00 0.00 0.00 4.26
3254 3358 5.346181 ACCGATGAAAACCCAAAGAAAAA 57.654 34.783 0.00 0.00 0.00 1.94
3255 3359 5.346181 AACCGATGAAAACCCAAAGAAAA 57.654 34.783 0.00 0.00 0.00 2.29
3256 3360 5.346181 AAACCGATGAAAACCCAAAGAAA 57.654 34.783 0.00 0.00 0.00 2.52
3257 3361 5.128008 AGAAAACCGATGAAAACCCAAAGAA 59.872 36.000 0.00 0.00 0.00 2.52
3258 3362 4.647399 AGAAAACCGATGAAAACCCAAAGA 59.353 37.500 0.00 0.00 0.00 2.52
3259 3363 4.944048 AGAAAACCGATGAAAACCCAAAG 58.056 39.130 0.00 0.00 0.00 2.77
3260 3364 5.346181 AAGAAAACCGATGAAAACCCAAA 57.654 34.783 0.00 0.00 0.00 3.28
3261 3365 5.346181 AAAGAAAACCGATGAAAACCCAA 57.654 34.783 0.00 0.00 0.00 4.12
3262 3366 5.112686 CAAAAGAAAACCGATGAAAACCCA 58.887 37.500 0.00 0.00 0.00 4.51
3263 3367 5.113383 ACAAAAGAAAACCGATGAAAACCC 58.887 37.500 0.00 0.00 0.00 4.11
3264 3368 6.656314 AACAAAAGAAAACCGATGAAAACC 57.344 33.333 0.00 0.00 0.00 3.27
3265 3369 8.942669 AAAAACAAAAGAAAACCGATGAAAAC 57.057 26.923 0.00 0.00 0.00 2.43
3308 3412 6.598064 ACGAAGAAAGAGAAACCAGAGAAAAA 59.402 34.615 0.00 0.00 0.00 1.94
3309 3413 6.113411 ACGAAGAAAGAGAAACCAGAGAAAA 58.887 36.000 0.00 0.00 0.00 2.29
3310 3414 5.671493 ACGAAGAAAGAGAAACCAGAGAAA 58.329 37.500 0.00 0.00 0.00 2.52
3311 3415 5.277857 ACGAAGAAAGAGAAACCAGAGAA 57.722 39.130 0.00 0.00 0.00 2.87
3312 3416 4.939052 ACGAAGAAAGAGAAACCAGAGA 57.061 40.909 0.00 0.00 0.00 3.10
3313 3417 8.030106 AGTATAACGAAGAAAGAGAAACCAGAG 58.970 37.037 0.00 0.00 0.00 3.35
3314 3418 7.893658 AGTATAACGAAGAAAGAGAAACCAGA 58.106 34.615 0.00 0.00 0.00 3.86
3315 3419 8.535690 AAGTATAACGAAGAAAGAGAAACCAG 57.464 34.615 0.00 0.00 0.00 4.00
3316 3420 8.897872 AAAGTATAACGAAGAAAGAGAAACCA 57.102 30.769 0.00 0.00 0.00 3.67
3354 3458 9.695884 GCGAAAAACAAACAATATGAAGAAAAA 57.304 25.926 0.00 0.00 0.00 1.94
3355 3459 9.092876 AGCGAAAAACAAACAATATGAAGAAAA 57.907 25.926 0.00 0.00 0.00 2.29
3356 3460 8.641499 AGCGAAAAACAAACAATATGAAGAAA 57.359 26.923 0.00 0.00 0.00 2.52
3357 3461 8.641499 AAGCGAAAAACAAACAATATGAAGAA 57.359 26.923 0.00 0.00 0.00 2.52
3358 3462 8.641499 AAAGCGAAAAACAAACAATATGAAGA 57.359 26.923 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.