Multiple sequence alignment - TraesCS3B01G279500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G279500 chr3B 100.000 2868 0 0 1 2868 449204713 449201846 0.000000e+00 5297.0
1 TraesCS3B01G279500 chr3B 90.708 678 46 3 1010 1682 448864512 448863847 0.000000e+00 887.0
2 TraesCS3B01G279500 chr3B 93.891 311 16 1 2561 2868 523946121 523945811 1.560000e-127 466.0
3 TraesCS3B01G279500 chr3B 86.900 229 23 4 557 785 13497165 13497386 1.710000e-62 250.0
4 TraesCS3B01G279500 chr3B 89.189 148 5 3 811 955 448864664 448864525 1.060000e-39 174.0
5 TraesCS3B01G279500 chr3D 91.228 1368 103 11 1008 2363 350793249 350791887 0.000000e+00 1845.0
6 TraesCS3B01G279500 chr3D 95.870 678 23 2 1010 1682 349974500 349973823 0.000000e+00 1092.0
7 TraesCS3B01G279500 chr3D 83.273 275 32 8 519 785 609148796 609148528 1.030000e-59 241.0
8 TraesCS3B01G279500 chr3D 88.667 150 4 4 811 955 349974654 349974513 1.370000e-38 171.0
9 TraesCS3B01G279500 chr3D 90.741 54 5 0 902 955 350793313 350793260 3.960000e-09 73.1
10 TraesCS3B01G279500 chr3A 95.087 692 29 3 1008 1695 468517036 468516346 0.000000e+00 1085.0
11 TraesCS3B01G279500 chr3A 93.805 678 37 2 1010 1682 468251791 468251114 0.000000e+00 1014.0
12 TraesCS3B01G279500 chr3A 87.221 806 73 13 1773 2561 468515978 468515186 0.000000e+00 891.0
13 TraesCS3B01G279500 chr3A 92.812 320 20 3 2551 2868 75283338 75283656 7.240000e-126 460.0
14 TraesCS3B01G279500 chr3A 95.652 69 3 0 1718 1786 468516347 468516279 8.400000e-21 111.0
15 TraesCS3B01G279500 chr6B 88.959 797 61 14 1 785 641950880 641951661 0.000000e+00 959.0
16 TraesCS3B01G279500 chr1D 84.401 827 75 26 1 785 83694628 83693814 0.000000e+00 763.0
17 TraesCS3B01G279500 chr1D 94.498 309 16 1 2560 2868 303170251 303170558 2.590000e-130 475.0
18 TraesCS3B01G279500 chr2D 84.140 826 77 26 1 784 571924259 571923446 0.000000e+00 750.0
19 TraesCS3B01G279500 chr2D 89.744 234 21 3 144 375 671573 671341 2.160000e-76 296.0
20 TraesCS3B01G279500 chr2D 79.412 442 52 19 6 418 493085770 493086201 2.810000e-70 276.0
21 TraesCS3B01G279500 chr7B 87.559 635 39 13 1 620 741365134 741364525 0.000000e+00 699.0
22 TraesCS3B01G279500 chr1B 95.146 309 15 0 2560 2868 451900019 451900327 3.320000e-134 488.0
23 TraesCS3B01G279500 chr1B 82.326 215 33 3 561 775 10760712 10760921 6.310000e-42 182.0
24 TraesCS3B01G279500 chr5D 94.463 307 16 1 2562 2868 66773014 66773319 3.340000e-129 472.0
25 TraesCS3B01G279500 chr5D 82.735 446 42 17 1 418 413064184 413064622 5.840000e-97 364.0
26 TraesCS3B01G279500 chr6D 94.137 307 18 0 2562 2868 112754586 112754892 4.330000e-128 468.0
27 TraesCS3B01G279500 chr6A 94.137 307 18 0 2562 2868 495400862 495401168 4.330000e-128 468.0
28 TraesCS3B01G279500 chr4A 94.156 308 17 1 2562 2868 567506017 567505710 4.330000e-128 468.0
29 TraesCS3B01G279500 chr2B 93.811 307 19 0 2562 2868 181110266 181109960 2.010000e-126 462.0
30 TraesCS3B01G279500 chr2B 76.550 371 61 18 6 361 798844098 798843739 2.270000e-41 180.0
31 TraesCS3B01G279500 chr4B 86.331 278 37 1 144 421 616806211 616805935 4.640000e-78 302.0
32 TraesCS3B01G279500 chr4B 84.058 207 28 3 579 785 616805807 616805606 8.110000e-46 195.0
33 TraesCS3B01G279500 chr7D 81.250 384 51 17 6 376 575307029 575307404 1.010000e-74 291.0
34 TraesCS3B01G279500 chr7D 88.889 108 8 1 6 113 458352474 458352577 2.320000e-26 130.0
35 TraesCS3B01G279500 chr2A 86.517 267 30 6 144 408 640704101 640703839 3.620000e-74 289.0
36 TraesCS3B01G279500 chr7A 86.275 255 34 1 144 398 38115474 38115727 2.810000e-70 276.0
37 TraesCS3B01G279500 chr7A 81.250 256 42 4 532 787 432967581 432967830 4.850000e-48 202.0
38 TraesCS3B01G279500 chr7A 79.915 234 40 5 562 795 547961221 547960995 6.360000e-37 165.0
39 TraesCS3B01G279500 chr4D 88.889 108 8 1 6 113 9595156 9595053 2.320000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G279500 chr3B 449201846 449204713 2867 True 5297.000000 5297 100.000000 1 2868 1 chr3B.!!$R1 2867
1 TraesCS3B01G279500 chr3B 448863847 448864664 817 True 530.500000 887 89.948500 811 1682 2 chr3B.!!$R3 871
2 TraesCS3B01G279500 chr3D 350791887 350793313 1426 True 959.050000 1845 90.984500 902 2363 2 chr3D.!!$R3 1461
3 TraesCS3B01G279500 chr3D 349973823 349974654 831 True 631.500000 1092 92.268500 811 1682 2 chr3D.!!$R2 871
4 TraesCS3B01G279500 chr3A 468251114 468251791 677 True 1014.000000 1014 93.805000 1010 1682 1 chr3A.!!$R1 672
5 TraesCS3B01G279500 chr3A 468515186 468517036 1850 True 695.666667 1085 92.653333 1008 2561 3 chr3A.!!$R2 1553
6 TraesCS3B01G279500 chr6B 641950880 641951661 781 False 959.000000 959 88.959000 1 785 1 chr6B.!!$F1 784
7 TraesCS3B01G279500 chr1D 83693814 83694628 814 True 763.000000 763 84.401000 1 785 1 chr1D.!!$R1 784
8 TraesCS3B01G279500 chr2D 571923446 571924259 813 True 750.000000 750 84.140000 1 784 1 chr2D.!!$R2 783
9 TraesCS3B01G279500 chr7B 741364525 741365134 609 True 699.000000 699 87.559000 1 620 1 chr7B.!!$R1 619
10 TraesCS3B01G279500 chr4B 616805606 616806211 605 True 248.500000 302 85.194500 144 785 2 chr4B.!!$R1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 681 0.036952 CAGTCGAGTCCACAGCCAAT 60.037 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2035 2441 0.10339 TTGTCGACTTCCTGTTCGCA 59.897 50.0 17.92 0.0 0.0 5.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
206 237 8.778358 TGTTTCAAAAAGTGTTTGCTTTTACAT 58.222 25.926 0.43 0.00 44.88 2.29
376 425 9.683651 GTTCAATGCTTTGTTTTGTACTTAAAC 57.316 29.630 11.67 13.75 36.32 2.01
387 436 7.067251 TGTTTTGTACTTAAACATTTCCGGTCT 59.933 33.333 17.32 0.00 39.75 3.85
388 437 6.548441 TTGTACTTAAACATTTCCGGTCTG 57.452 37.500 0.00 0.00 0.00 3.51
401 450 8.680001 ACATTTCCGGTCTGTTTTTATATTACC 58.320 33.333 0.00 0.00 0.00 2.85
491 550 2.841070 TTTGTTACGTCGCGCTTTAG 57.159 45.000 5.56 0.00 0.00 1.85
493 552 1.769733 TGTTACGTCGCGCTTTAGTT 58.230 45.000 5.56 0.00 0.00 2.24
516 575 2.561419 ACTCTTTTCCGAGAATCCGTCA 59.439 45.455 0.00 0.00 35.06 4.35
524 583 2.460918 CGAGAATCCGTCACGCTTTAT 58.539 47.619 0.00 0.00 33.54 1.40
525 584 2.858344 CGAGAATCCGTCACGCTTTATT 59.142 45.455 0.00 0.00 33.54 1.40
526 585 4.039703 CGAGAATCCGTCACGCTTTATTA 58.960 43.478 0.00 0.00 33.54 0.98
529 588 6.292168 CGAGAATCCGTCACGCTTTATTAATT 60.292 38.462 0.00 0.00 33.54 1.40
614 681 0.036952 CAGTCGAGTCCACAGCCAAT 60.037 55.000 0.00 0.00 0.00 3.16
620 687 2.158900 CGAGTCCACAGCCAATAATCCT 60.159 50.000 0.00 0.00 0.00 3.24
632 699 5.893255 AGCCAATAATCCTGTGATTTAGCAA 59.107 36.000 0.00 0.00 41.44 3.91
639 706 2.478370 CCTGTGATTTAGCAATGCCACG 60.478 50.000 0.00 0.00 0.00 4.94
685 752 7.054124 ACTCACTCACTCAAGGTTGAAAATAA 58.946 34.615 0.00 0.00 36.64 1.40
696 763 5.394224 GGTTGAAAATAAACCGGGATCAA 57.606 39.130 6.32 2.64 37.90 2.57
711 778 2.029918 GGATCAAAGAGTTTGGTGTGCC 60.030 50.000 0.00 0.00 40.98 5.01
715 782 1.523758 AAGAGTTTGGTGTGCCGATC 58.476 50.000 0.00 0.00 37.67 3.69
717 784 1.079503 GAGTTTGGTGTGCCGATCTC 58.920 55.000 0.00 0.00 37.65 2.75
719 786 0.605319 GTTTGGTGTGCCGATCTCCA 60.605 55.000 0.00 0.00 37.67 3.86
725 792 1.412710 GTGTGCCGATCTCCAGGATTA 59.587 52.381 0.00 0.00 34.33 1.75
805 872 0.303493 CGGGAAAATGCCGTATGTCG 59.697 55.000 1.84 0.00 46.74 4.35
806 873 1.658994 GGGAAAATGCCGTATGTCGA 58.341 50.000 0.00 0.00 42.86 4.20
807 874 1.329599 GGGAAAATGCCGTATGTCGAC 59.670 52.381 9.11 9.11 42.86 4.20
808 875 1.005347 GGAAAATGCCGTATGTCGACG 60.005 52.381 11.62 0.00 42.86 5.12
809 876 1.921887 GAAAATGCCGTATGTCGACGA 59.078 47.619 11.62 0.00 45.82 4.20
848 917 2.779951 AATAGCGTCGGCAGCACACA 62.780 55.000 6.62 0.00 43.41 3.72
867 936 7.981225 AGCACACACAAATCTTTTAAAATCTGT 59.019 29.630 0.09 0.60 0.00 3.41
886 955 2.402388 CGACCGTCGCGTATCTGT 59.598 61.111 8.21 0.64 31.14 3.41
893 962 2.599377 CCGTCGCGTATCTGTTAGACTC 60.599 54.545 5.77 0.00 0.00 3.36
894 963 2.626892 GTCGCGTATCTGTTAGACTCG 58.373 52.381 5.77 0.00 0.00 4.18
895 964 2.283617 GTCGCGTATCTGTTAGACTCGA 59.716 50.000 5.77 0.00 0.00 4.04
896 965 2.538861 TCGCGTATCTGTTAGACTCGAG 59.461 50.000 11.84 11.84 0.00 4.04
897 966 2.641912 GCGTATCTGTTAGACTCGAGC 58.358 52.381 13.61 5.49 0.00 5.03
898 967 2.031807 GCGTATCTGTTAGACTCGAGCA 59.968 50.000 13.61 0.42 0.00 4.26
899 968 3.846744 GCGTATCTGTTAGACTCGAGCAG 60.847 52.174 13.61 11.36 0.00 4.24
900 969 3.556365 CGTATCTGTTAGACTCGAGCAGA 59.444 47.826 18.13 18.13 39.98 4.26
931 1000 2.742116 GGAATAGCGGCCCACCTGA 61.742 63.158 0.00 0.00 0.00 3.86
941 1010 1.826024 CCCACCTGAATCCTCCTCG 59.174 63.158 0.00 0.00 0.00 4.63
944 1013 0.460987 CACCTGAATCCTCCTCGCAC 60.461 60.000 0.00 0.00 0.00 5.34
945 1014 0.904865 ACCTGAATCCTCCTCGCACA 60.905 55.000 0.00 0.00 0.00 4.57
947 1016 1.339055 CCTGAATCCTCCTCGCACAAA 60.339 52.381 0.00 0.00 0.00 2.83
949 1018 2.417933 CTGAATCCTCCTCGCACAAAAG 59.582 50.000 0.00 0.00 0.00 2.27
950 1019 2.038426 TGAATCCTCCTCGCACAAAAGA 59.962 45.455 0.00 0.00 0.00 2.52
951 1020 2.100605 ATCCTCCTCGCACAAAAGAC 57.899 50.000 0.00 0.00 0.00 3.01
952 1021 0.756294 TCCTCCTCGCACAAAAGACA 59.244 50.000 0.00 0.00 0.00 3.41
953 1022 1.140052 TCCTCCTCGCACAAAAGACAA 59.860 47.619 0.00 0.00 0.00 3.18
954 1023 1.946768 CCTCCTCGCACAAAAGACAAA 59.053 47.619 0.00 0.00 0.00 2.83
955 1024 2.287009 CCTCCTCGCACAAAAGACAAAC 60.287 50.000 0.00 0.00 0.00 2.93
956 1025 1.673920 TCCTCGCACAAAAGACAAACC 59.326 47.619 0.00 0.00 0.00 3.27
957 1026 1.269051 CCTCGCACAAAAGACAAACCC 60.269 52.381 0.00 0.00 0.00 4.11
962 1031 2.935849 GCACAAAAGACAAACCCAAAGG 59.064 45.455 0.00 0.00 40.04 3.11
977 1046 6.093907 ACCCAAAGGCAAAACGTATACGTG 62.094 45.833 30.03 18.97 45.01 4.49
994 1063 9.763465 CGTATACGTGACAAATTTCCTATTTTT 57.237 29.630 17.16 0.00 34.11 1.94
1059 1128 3.003482 AGAGATACATAGAACGTGACGGC 59.997 47.826 10.66 0.27 0.00 5.68
1161 1233 0.536687 CGGGTCCTGGACGATAGCTA 60.537 60.000 19.98 0.00 42.67 3.32
1358 1433 4.065281 CCGGCCTTCGACCTCGTT 62.065 66.667 0.00 0.00 42.43 3.85
1359 1434 2.506438 CGGCCTTCGACCTCGTTC 60.506 66.667 0.00 0.00 42.43 3.95
1376 1451 0.948623 TTCTGCACGTCGACAATGGG 60.949 55.000 17.16 1.09 0.00 4.00
1601 1676 0.105709 TGGAGATCGACATGGGCCTA 60.106 55.000 4.53 0.00 0.00 3.93
1699 1774 5.067283 ACGTTTTGTTTTGCCTCAGTAGATT 59.933 36.000 0.00 0.00 0.00 2.40
1700 1775 5.625311 CGTTTTGTTTTGCCTCAGTAGATTC 59.375 40.000 0.00 0.00 0.00 2.52
1701 1776 6.503524 GTTTTGTTTTGCCTCAGTAGATTCA 58.496 36.000 0.00 0.00 0.00 2.57
1812 2201 2.370281 TCGAGCACTTCATGTCCTTC 57.630 50.000 0.00 0.00 0.00 3.46
1813 2202 1.895798 TCGAGCACTTCATGTCCTTCT 59.104 47.619 0.00 0.00 0.00 2.85
1886 2290 6.934645 CAGCTCAATAAATAAGGATAACCGGA 59.065 38.462 9.46 0.00 41.83 5.14
1920 2326 4.953579 ACACACCACAGGTTGAAAATTACT 59.046 37.500 0.00 0.00 31.02 2.24
1926 2332 5.070001 CACAGGTTGAAAATTACTCCCAGA 58.930 41.667 0.00 0.00 0.00 3.86
1951 2357 1.152756 AGGAGCCAACCCAACACAC 60.153 57.895 0.00 0.00 0.00 3.82
2023 2429 1.278238 GCGTGACCTTGTTATCTCCG 58.722 55.000 0.00 0.00 0.00 4.63
2042 2448 0.960364 GGGCAGGATCTTTGCGAACA 60.960 55.000 13.87 0.00 42.42 3.18
2069 2475 2.036217 TCGACAACTTTGGACCATACGT 59.964 45.455 0.00 0.00 0.00 3.57
2130 2536 3.438434 GGTTTGAAAGCATCACCTCTCTC 59.562 47.826 1.74 0.00 37.92 3.20
2163 2569 3.074412 GAGAGAGGAAAATTTGGCGTGA 58.926 45.455 0.00 0.00 0.00 4.35
2239 2646 2.697147 AAAGCTCCAAGGCTCCGCAA 62.697 55.000 0.00 0.00 42.24 4.85
2340 2752 3.404899 GGAAACCGTAGATCCACAAACA 58.595 45.455 0.00 0.00 0.00 2.83
2345 2757 2.409975 CGTAGATCCACAAACAACCGT 58.590 47.619 0.00 0.00 0.00 4.83
2346 2758 2.803956 CGTAGATCCACAAACAACCGTT 59.196 45.455 0.00 0.00 36.73 4.44
2355 2767 0.820871 AAACAACCGTTGCACACCAT 59.179 45.000 11.29 0.00 34.86 3.55
2365 2777 4.097714 CGTTGCACACCATATTTCACATC 58.902 43.478 0.00 0.00 0.00 3.06
2377 2789 7.442364 ACCATATTTCACATCTTAATCACGAGG 59.558 37.037 0.00 0.00 0.00 4.63
2390 2806 2.104967 TCACGAGGTTATAGGGTGTGG 58.895 52.381 0.00 0.00 0.00 4.17
2392 2808 0.106149 CGAGGTTATAGGGTGTGGGC 59.894 60.000 0.00 0.00 0.00 5.36
2393 2809 1.508256 GAGGTTATAGGGTGTGGGCT 58.492 55.000 0.00 0.00 0.00 5.19
2394 2810 1.141053 GAGGTTATAGGGTGTGGGCTG 59.859 57.143 0.00 0.00 0.00 4.85
2395 2811 0.182775 GGTTATAGGGTGTGGGCTGG 59.817 60.000 0.00 0.00 0.00 4.85
2396 2812 0.465642 GTTATAGGGTGTGGGCTGGC 60.466 60.000 0.00 0.00 0.00 4.85
2403 2821 2.904866 TGTGGGCTGGCGTTGAAC 60.905 61.111 0.00 0.00 0.00 3.18
2475 2893 6.500910 TGTACCAATACTAATACTGTCAGCG 58.499 40.000 0.00 0.00 32.00 5.18
2489 2907 3.674523 AGCGTCGCTGACTCTGCA 61.675 61.111 21.02 0.00 37.57 4.41
2535 2953 2.576832 AACAGTGCATGGCCCAAGC 61.577 57.895 3.48 3.48 38.76 4.01
2538 2956 4.424566 GTGCATGGCCCAAGCGTG 62.425 66.667 6.45 0.00 41.24 5.34
2541 2959 3.454573 CATGGCCCAAGCGTGCAT 61.455 61.111 0.00 0.00 41.24 3.96
2555 2973 0.108520 GTGCATGCATTCCCAACCTG 60.109 55.000 25.64 0.00 0.00 4.00
2556 2974 1.153509 GCATGCATTCCCAACCTGC 60.154 57.895 14.21 0.00 36.45 4.85
2561 2979 1.805428 GCATTCCCAACCTGCACGTT 61.805 55.000 0.00 0.00 35.96 3.99
2562 2980 0.039256 CATTCCCAACCTGCACGTTG 60.039 55.000 18.32 18.32 42.31 4.10
2563 2981 0.179004 ATTCCCAACCTGCACGTTGA 60.179 50.000 24.54 9.71 44.88 3.18
2564 2982 0.394488 TTCCCAACCTGCACGTTGAA 60.394 50.000 24.54 12.48 44.88 2.69
2565 2983 0.394488 TCCCAACCTGCACGTTGAAA 60.394 50.000 24.54 12.40 44.88 2.69
2566 2984 0.030638 CCCAACCTGCACGTTGAAAG 59.969 55.000 24.54 11.55 44.88 2.62
2567 2985 1.021202 CCAACCTGCACGTTGAAAGA 58.979 50.000 24.54 0.00 44.88 2.52
2568 2986 1.403679 CCAACCTGCACGTTGAAAGAA 59.596 47.619 24.54 0.00 44.88 2.52
2569 2987 2.450160 CAACCTGCACGTTGAAAGAAC 58.550 47.619 19.98 0.00 44.88 3.01
2570 2988 1.745232 ACCTGCACGTTGAAAGAACA 58.255 45.000 0.00 0.00 0.00 3.18
2571 2989 2.297701 ACCTGCACGTTGAAAGAACAT 58.702 42.857 0.00 0.00 0.00 2.71
2572 2990 2.033299 ACCTGCACGTTGAAAGAACATG 59.967 45.455 0.00 0.00 0.00 3.21
2573 2991 2.033299 CCTGCACGTTGAAAGAACATGT 59.967 45.455 0.00 0.00 0.00 3.21
2574 2992 3.038017 CTGCACGTTGAAAGAACATGTG 58.962 45.455 0.00 0.00 33.09 3.21
2575 2993 2.223456 TGCACGTTGAAAGAACATGTGG 60.223 45.455 0.00 0.00 31.70 4.17
2576 2994 2.223479 GCACGTTGAAAGAACATGTGGT 60.223 45.455 0.00 0.00 31.70 4.16
2577 2995 3.362295 CACGTTGAAAGAACATGTGGTG 58.638 45.455 0.00 0.00 0.00 4.17
2578 2996 2.223479 ACGTTGAAAGAACATGTGGTGC 60.223 45.455 0.00 0.00 0.00 5.01
2579 2997 2.742774 GTTGAAAGAACATGTGGTGCC 58.257 47.619 0.00 0.00 0.00 5.01
2580 2998 1.327303 TGAAAGAACATGTGGTGCCC 58.673 50.000 0.00 0.00 0.00 5.36
2581 2999 0.603065 GAAAGAACATGTGGTGCCCC 59.397 55.000 0.00 0.00 0.00 5.80
2582 3000 0.831711 AAAGAACATGTGGTGCCCCC 60.832 55.000 0.00 0.00 0.00 5.40
2583 3001 2.017668 AAGAACATGTGGTGCCCCCA 62.018 55.000 0.00 0.00 42.51 4.96
2590 3008 2.203758 TGGTGCCCCCATGTTTGG 60.204 61.111 0.00 0.00 38.72 3.28
2591 3009 2.203773 GGTGCCCCCATGTTTGGT 60.204 61.111 0.00 0.00 41.91 3.67
2592 3010 1.841103 GGTGCCCCCATGTTTGGTT 60.841 57.895 0.00 0.00 41.91 3.67
2593 3011 1.414866 GGTGCCCCCATGTTTGGTTT 61.415 55.000 0.00 0.00 41.91 3.27
2594 3012 0.472044 GTGCCCCCATGTTTGGTTTT 59.528 50.000 0.00 0.00 41.91 2.43
2595 3013 0.471617 TGCCCCCATGTTTGGTTTTG 59.528 50.000 0.00 0.00 41.91 2.44
2596 3014 0.250684 GCCCCCATGTTTGGTTTTGG 60.251 55.000 0.00 0.00 41.91 3.28
2597 3015 1.135960 CCCCCATGTTTGGTTTTGGT 58.864 50.000 0.00 0.00 41.91 3.67
2598 3016 2.330216 CCCCCATGTTTGGTTTTGGTA 58.670 47.619 0.00 0.00 41.91 3.25
2599 3017 2.706190 CCCCCATGTTTGGTTTTGGTAA 59.294 45.455 0.00 0.00 41.91 2.85
2600 3018 3.329225 CCCCCATGTTTGGTTTTGGTAAT 59.671 43.478 0.00 0.00 41.91 1.89
2601 3019 4.202514 CCCCCATGTTTGGTTTTGGTAATT 60.203 41.667 0.00 0.00 41.91 1.40
2602 3020 4.759183 CCCCATGTTTGGTTTTGGTAATTG 59.241 41.667 0.00 0.00 41.91 2.32
2603 3021 5.455326 CCCCATGTTTGGTTTTGGTAATTGA 60.455 40.000 0.00 0.00 41.91 2.57
2604 3022 6.237154 CCCATGTTTGGTTTTGGTAATTGAT 58.763 36.000 0.00 0.00 41.91 2.57
2605 3023 6.149142 CCCATGTTTGGTTTTGGTAATTGATG 59.851 38.462 0.00 0.00 41.91 3.07
2606 3024 6.933521 CCATGTTTGGTTTTGGTAATTGATGA 59.066 34.615 0.00 0.00 38.30 2.92
2607 3025 7.095271 CCATGTTTGGTTTTGGTAATTGATGAC 60.095 37.037 0.00 0.00 38.30 3.06
2608 3026 6.878317 TGTTTGGTTTTGGTAATTGATGACA 58.122 32.000 0.00 0.00 0.00 3.58
2609 3027 7.331026 TGTTTGGTTTTGGTAATTGATGACAA 58.669 30.769 0.00 0.00 40.42 3.18
2610 3028 7.989741 TGTTTGGTTTTGGTAATTGATGACAAT 59.010 29.630 0.00 0.00 46.99 2.71
2611 3029 8.495148 GTTTGGTTTTGGTAATTGATGACAATC 58.505 33.333 0.00 0.00 44.67 2.67
2612 3030 7.537596 TGGTTTTGGTAATTGATGACAATCT 57.462 32.000 0.00 0.00 44.67 2.40
2613 3031 7.601856 TGGTTTTGGTAATTGATGACAATCTC 58.398 34.615 0.00 0.00 44.67 2.75
2614 3032 7.451255 TGGTTTTGGTAATTGATGACAATCTCT 59.549 33.333 0.00 0.00 44.67 3.10
2615 3033 8.956426 GGTTTTGGTAATTGATGACAATCTCTA 58.044 33.333 0.00 0.00 44.67 2.43
2618 3036 8.681486 TTGGTAATTGATGACAATCTCTATGG 57.319 34.615 0.00 0.00 44.67 2.74
2619 3037 8.033178 TGGTAATTGATGACAATCTCTATGGA 57.967 34.615 0.00 0.00 44.67 3.41
2620 3038 7.933577 TGGTAATTGATGACAATCTCTATGGAC 59.066 37.037 0.00 0.00 44.67 4.02
2621 3039 8.153550 GGTAATTGATGACAATCTCTATGGACT 58.846 37.037 0.00 0.00 44.67 3.85
2625 3043 9.775854 ATTGATGACAATCTCTATGGACTAAAG 57.224 33.333 0.00 0.00 42.20 1.85
2626 3044 7.730084 TGATGACAATCTCTATGGACTAAAGG 58.270 38.462 0.00 0.00 33.61 3.11
2627 3045 7.345653 TGATGACAATCTCTATGGACTAAAGGT 59.654 37.037 0.00 0.00 33.61 3.50
2628 3046 7.496346 TGACAATCTCTATGGACTAAAGGTT 57.504 36.000 0.00 0.00 0.00 3.50
2629 3047 7.331026 TGACAATCTCTATGGACTAAAGGTTG 58.669 38.462 0.00 0.00 0.00 3.77
2630 3048 6.116126 ACAATCTCTATGGACTAAAGGTTGC 58.884 40.000 0.00 0.00 0.00 4.17
2631 3049 4.755266 TCTCTATGGACTAAAGGTTGCC 57.245 45.455 0.00 0.00 0.00 4.52
2632 3050 4.362677 TCTCTATGGACTAAAGGTTGCCT 58.637 43.478 0.00 0.00 33.87 4.75
2634 3052 4.843728 TCTATGGACTAAAGGTTGCCTTG 58.156 43.478 0.71 0.00 43.92 3.61
2635 3053 3.806949 ATGGACTAAAGGTTGCCTTGA 57.193 42.857 0.71 0.00 43.92 3.02
2636 3054 3.140325 TGGACTAAAGGTTGCCTTGAG 57.860 47.619 10.07 10.07 43.92 3.02
2646 3064 7.775053 AAAGGTTGCCTTGAGTTATATTTGA 57.225 32.000 0.71 0.00 43.92 2.69
2647 3065 7.775053 AAGGTTGCCTTGAGTTATATTTGAA 57.225 32.000 0.00 0.00 42.96 2.69
2648 3066 7.396540 AGGTTGCCTTGAGTTATATTTGAAG 57.603 36.000 0.00 0.00 0.00 3.02
2649 3067 6.378280 AGGTTGCCTTGAGTTATATTTGAAGG 59.622 38.462 0.00 0.00 34.30 3.46
2650 3068 6.405842 GGTTGCCTTGAGTTATATTTGAAGGG 60.406 42.308 0.00 0.00 32.21 3.95
2651 3069 5.826643 TGCCTTGAGTTATATTTGAAGGGT 58.173 37.500 0.00 0.00 32.21 4.34
2652 3070 6.252995 TGCCTTGAGTTATATTTGAAGGGTT 58.747 36.000 0.00 0.00 32.21 4.11
2653 3071 6.723977 TGCCTTGAGTTATATTTGAAGGGTTT 59.276 34.615 0.00 0.00 32.21 3.27
2654 3072 7.035612 GCCTTGAGTTATATTTGAAGGGTTTG 58.964 38.462 0.00 0.00 32.21 2.93
2655 3073 7.309805 GCCTTGAGTTATATTTGAAGGGTTTGT 60.310 37.037 0.00 0.00 32.21 2.83
2656 3074 8.244113 CCTTGAGTTATATTTGAAGGGTTTGTC 58.756 37.037 0.00 0.00 0.00 3.18
2657 3075 7.696992 TGAGTTATATTTGAAGGGTTTGTCC 57.303 36.000 0.00 0.00 0.00 4.02
2658 3076 7.235079 TGAGTTATATTTGAAGGGTTTGTCCA 58.765 34.615 0.00 0.00 38.11 4.02
2659 3077 7.893302 TGAGTTATATTTGAAGGGTTTGTCCAT 59.107 33.333 0.00 0.00 38.11 3.41
2660 3078 9.403583 GAGTTATATTTGAAGGGTTTGTCCATA 57.596 33.333 0.00 0.00 38.11 2.74
2661 3079 9.408648 AGTTATATTTGAAGGGTTTGTCCATAG 57.591 33.333 0.00 0.00 38.11 2.23
2662 3080 8.630037 GTTATATTTGAAGGGTTTGTCCATAGG 58.370 37.037 0.00 0.00 38.11 2.57
2663 3081 4.463050 TTTGAAGGGTTTGTCCATAGGT 57.537 40.909 0.00 0.00 38.11 3.08
2664 3082 5.586155 TTTGAAGGGTTTGTCCATAGGTA 57.414 39.130 0.00 0.00 38.11 3.08
2665 3083 5.789574 TTGAAGGGTTTGTCCATAGGTAT 57.210 39.130 0.00 0.00 38.11 2.73
2666 3084 5.789574 TGAAGGGTTTGTCCATAGGTATT 57.210 39.130 0.00 0.00 38.11 1.89
2667 3085 5.505780 TGAAGGGTTTGTCCATAGGTATTG 58.494 41.667 0.00 0.00 38.11 1.90
2668 3086 3.898482 AGGGTTTGTCCATAGGTATTGC 58.102 45.455 0.00 0.00 38.11 3.56
2669 3087 3.527665 AGGGTTTGTCCATAGGTATTGCT 59.472 43.478 0.00 0.00 38.11 3.91
2670 3088 4.017499 AGGGTTTGTCCATAGGTATTGCTT 60.017 41.667 0.00 0.00 38.11 3.91
2671 3089 4.097892 GGGTTTGTCCATAGGTATTGCTTG 59.902 45.833 0.00 0.00 38.11 4.01
2672 3090 4.947388 GGTTTGTCCATAGGTATTGCTTGA 59.053 41.667 0.00 0.00 35.97 3.02
2673 3091 5.417580 GGTTTGTCCATAGGTATTGCTTGAA 59.582 40.000 0.00 0.00 35.97 2.69
2674 3092 6.404734 GGTTTGTCCATAGGTATTGCTTGAAG 60.405 42.308 0.00 0.00 35.97 3.02
2675 3093 5.692115 TGTCCATAGGTATTGCTTGAAGA 57.308 39.130 0.00 0.00 0.00 2.87
2676 3094 5.428253 TGTCCATAGGTATTGCTTGAAGAC 58.572 41.667 0.00 0.00 0.00 3.01
2677 3095 4.816925 GTCCATAGGTATTGCTTGAAGACC 59.183 45.833 0.00 0.00 45.10 3.85
2678 3096 4.473196 TCCATAGGTATTGCTTGAAGACCA 59.527 41.667 0.00 0.00 46.88 4.02
2679 3097 5.132648 TCCATAGGTATTGCTTGAAGACCAT 59.867 40.000 0.00 0.00 46.88 3.55
2680 3098 5.829924 CCATAGGTATTGCTTGAAGACCATT 59.170 40.000 0.00 0.00 46.88 3.16
2681 3099 6.322201 CCATAGGTATTGCTTGAAGACCATTT 59.678 38.462 0.00 0.00 46.88 2.32
2682 3100 5.649782 AGGTATTGCTTGAAGACCATTTG 57.350 39.130 0.00 0.00 46.88 2.32
2683 3101 5.079643 AGGTATTGCTTGAAGACCATTTGT 58.920 37.500 0.00 0.00 46.88 2.83
2684 3102 5.539955 AGGTATTGCTTGAAGACCATTTGTT 59.460 36.000 0.00 0.00 46.88 2.83
2685 3103 5.634859 GGTATTGCTTGAAGACCATTTGTTG 59.365 40.000 0.00 0.00 44.29 3.33
2686 3104 9.353531 AGGTATTGCTTGAAGACCATTTGTTGG 62.354 40.741 0.00 0.00 46.88 3.77
2700 3118 7.420184 CCATTTGTTGGTTTCAAGGTTATTC 57.580 36.000 0.00 0.00 40.99 1.75
2701 3119 6.145371 CCATTTGTTGGTTTCAAGGTTATTCG 59.855 38.462 0.00 0.00 40.99 3.34
2702 3120 6.452494 TTTGTTGGTTTCAAGGTTATTCGA 57.548 33.333 0.00 0.00 32.92 3.71
2703 3121 6.452494 TTGTTGGTTTCAAGGTTATTCGAA 57.548 33.333 0.00 0.00 32.92 3.71
2704 3122 6.067263 TGTTGGTTTCAAGGTTATTCGAAG 57.933 37.500 3.35 0.00 32.92 3.79
2705 3123 5.823570 TGTTGGTTTCAAGGTTATTCGAAGA 59.176 36.000 3.35 0.00 32.92 2.87
2706 3124 6.319152 TGTTGGTTTCAAGGTTATTCGAAGAA 59.681 34.615 3.35 1.66 35.88 2.52
2707 3125 6.554334 TGGTTTCAAGGTTATTCGAAGAAG 57.446 37.500 5.27 0.00 45.90 2.85
2708 3126 6.292923 TGGTTTCAAGGTTATTCGAAGAAGA 58.707 36.000 5.27 0.00 45.90 2.87
2709 3127 6.768861 TGGTTTCAAGGTTATTCGAAGAAGAA 59.231 34.615 5.27 3.34 45.90 2.52
2710 3128 7.447238 TGGTTTCAAGGTTATTCGAAGAAGAAT 59.553 33.333 5.27 0.00 45.90 2.40
2711 3129 8.943002 GGTTTCAAGGTTATTCGAAGAAGAATA 58.057 33.333 5.27 0.00 45.90 1.75
2714 3132 9.667107 TTCAAGGTTATTCGAAGAAGAATATGT 57.333 29.630 5.27 0.00 45.90 2.29
2715 3133 9.098355 TCAAGGTTATTCGAAGAAGAATATGTG 57.902 33.333 5.27 0.00 45.90 3.21
2716 3134 8.883731 CAAGGTTATTCGAAGAAGAATATGTGT 58.116 33.333 5.27 0.00 45.90 3.72
2717 3135 9.449719 AAGGTTATTCGAAGAAGAATATGTGTT 57.550 29.630 5.27 0.00 45.90 3.32
2718 3136 8.883731 AGGTTATTCGAAGAAGAATATGTGTTG 58.116 33.333 5.27 0.00 45.90 3.33
2719 3137 8.879759 GGTTATTCGAAGAAGAATATGTGTTGA 58.120 33.333 5.27 0.00 45.90 3.18
2720 3138 9.690434 GTTATTCGAAGAAGAATATGTGTTGAC 57.310 33.333 5.27 0.00 45.90 3.18
2721 3139 6.721571 TTCGAAGAAGAATATGTGTTGACC 57.278 37.500 0.00 0.00 45.90 4.02
2722 3140 5.789521 TCGAAGAAGAATATGTGTTGACCA 58.210 37.500 0.00 0.00 0.00 4.02
2723 3141 6.227522 TCGAAGAAGAATATGTGTTGACCAA 58.772 36.000 0.00 0.00 0.00 3.67
2724 3142 6.368791 TCGAAGAAGAATATGTGTTGACCAAG 59.631 38.462 0.00 0.00 0.00 3.61
2725 3143 6.402550 CGAAGAAGAATATGTGTTGACCAAGG 60.403 42.308 0.00 0.00 0.00 3.61
2726 3144 5.880901 AGAAGAATATGTGTTGACCAAGGT 58.119 37.500 0.00 0.00 0.00 3.50
2727 3145 5.707298 AGAAGAATATGTGTTGACCAAGGTG 59.293 40.000 0.00 0.00 0.00 4.00
2728 3146 3.758554 AGAATATGTGTTGACCAAGGTGC 59.241 43.478 0.00 0.00 0.00 5.01
2729 3147 2.949177 TATGTGTTGACCAAGGTGCT 57.051 45.000 0.00 0.00 0.00 4.40
2730 3148 2.949177 ATGTGTTGACCAAGGTGCTA 57.051 45.000 0.00 0.00 0.00 3.49
2731 3149 2.949177 TGTGTTGACCAAGGTGCTAT 57.051 45.000 0.00 0.00 0.00 2.97
2732 3150 3.222173 TGTGTTGACCAAGGTGCTATT 57.778 42.857 0.00 0.00 0.00 1.73
2733 3151 3.146066 TGTGTTGACCAAGGTGCTATTC 58.854 45.455 0.00 0.00 0.00 1.75
2734 3152 3.146066 GTGTTGACCAAGGTGCTATTCA 58.854 45.455 0.00 0.00 0.00 2.57
2735 3153 3.568007 GTGTTGACCAAGGTGCTATTCAA 59.432 43.478 0.00 0.00 0.00 2.69
2736 3154 3.820467 TGTTGACCAAGGTGCTATTCAAG 59.180 43.478 0.00 0.00 0.00 3.02
2737 3155 3.071874 TGACCAAGGTGCTATTCAAGG 57.928 47.619 0.00 0.00 0.00 3.61
2738 3156 2.642311 TGACCAAGGTGCTATTCAAGGA 59.358 45.455 0.00 0.00 0.00 3.36
2739 3157 3.266772 TGACCAAGGTGCTATTCAAGGAT 59.733 43.478 0.00 0.00 0.00 3.24
2740 3158 4.263905 TGACCAAGGTGCTATTCAAGGATT 60.264 41.667 0.00 0.00 0.00 3.01
2741 3159 4.677182 ACCAAGGTGCTATTCAAGGATTT 58.323 39.130 0.00 0.00 0.00 2.17
2742 3160 5.826643 ACCAAGGTGCTATTCAAGGATTTA 58.173 37.500 0.00 0.00 0.00 1.40
2743 3161 6.435164 ACCAAGGTGCTATTCAAGGATTTAT 58.565 36.000 0.00 0.00 0.00 1.40
2744 3162 6.547510 ACCAAGGTGCTATTCAAGGATTTATC 59.452 38.462 0.00 0.00 0.00 1.75
2761 3179 8.693542 GGATTTATCCAAAGATTTGTCACTTG 57.306 34.615 3.87 0.00 46.38 3.16
2762 3180 8.522830 GGATTTATCCAAAGATTTGTCACTTGA 58.477 33.333 3.87 0.00 46.38 3.02
2763 3181 9.565213 GATTTATCCAAAGATTTGTCACTTGAG 57.435 33.333 4.71 0.00 36.45 3.02
2764 3182 8.690203 TTTATCCAAAGATTTGTCACTTGAGA 57.310 30.769 4.71 0.00 36.45 3.27
2765 3183 6.814506 ATCCAAAGATTTGTCACTTGAGAG 57.185 37.500 4.71 0.00 36.45 3.20
2766 3184 5.684704 TCCAAAGATTTGTCACTTGAGAGT 58.315 37.500 4.71 0.00 36.45 3.24
2767 3185 6.122277 TCCAAAGATTTGTCACTTGAGAGTT 58.878 36.000 4.71 0.00 36.45 3.01
2768 3186 6.038603 TCCAAAGATTTGTCACTTGAGAGTTG 59.961 38.462 4.71 0.00 36.45 3.16
2769 3187 6.038603 CCAAAGATTTGTCACTTGAGAGTTGA 59.961 38.462 4.71 0.00 36.45 3.18
2770 3188 6.857777 AAGATTTGTCACTTGAGAGTTGAG 57.142 37.500 0.00 0.00 32.54 3.02
2771 3189 4.754114 AGATTTGTCACTTGAGAGTTGAGC 59.246 41.667 0.00 0.00 32.54 4.26
2772 3190 2.533266 TGTCACTTGAGAGTTGAGCC 57.467 50.000 0.00 0.00 32.54 4.70
2773 3191 2.042464 TGTCACTTGAGAGTTGAGCCT 58.958 47.619 0.00 0.00 32.54 4.58
2774 3192 3.230976 TGTCACTTGAGAGTTGAGCCTA 58.769 45.455 0.00 0.00 32.54 3.93
2775 3193 3.834813 TGTCACTTGAGAGTTGAGCCTAT 59.165 43.478 0.00 0.00 32.54 2.57
2776 3194 4.284490 TGTCACTTGAGAGTTGAGCCTATT 59.716 41.667 0.00 0.00 32.54 1.73
2777 3195 4.629200 GTCACTTGAGAGTTGAGCCTATTG 59.371 45.833 0.00 0.00 32.54 1.90
2778 3196 3.373439 CACTTGAGAGTTGAGCCTATTGC 59.627 47.826 0.00 0.00 35.13 3.56
2779 3197 3.008375 ACTTGAGAGTTGAGCCTATTGCA 59.992 43.478 0.00 0.00 35.78 4.08
2780 3198 3.701205 TGAGAGTTGAGCCTATTGCAA 57.299 42.857 0.00 0.00 44.83 4.08
2781 3199 3.603532 TGAGAGTTGAGCCTATTGCAAG 58.396 45.455 4.94 0.00 44.83 4.01
2782 3200 2.354199 GAGAGTTGAGCCTATTGCAAGC 59.646 50.000 4.94 2.78 44.83 4.01
2783 3201 2.086869 GAGTTGAGCCTATTGCAAGCA 58.913 47.619 4.94 0.00 44.83 3.91
2784 3202 2.686915 GAGTTGAGCCTATTGCAAGCAT 59.313 45.455 4.94 0.00 44.83 3.79
2785 3203 2.426024 AGTTGAGCCTATTGCAAGCATG 59.574 45.455 4.94 0.00 44.83 4.06
2786 3204 2.133281 TGAGCCTATTGCAAGCATGT 57.867 45.000 4.94 0.00 44.83 3.21
2787 3205 2.019249 TGAGCCTATTGCAAGCATGTC 58.981 47.619 4.94 0.00 44.83 3.06
2788 3206 2.295885 GAGCCTATTGCAAGCATGTCT 58.704 47.619 4.94 0.00 44.83 3.41
2789 3207 2.686915 GAGCCTATTGCAAGCATGTCTT 59.313 45.455 4.94 0.00 44.83 3.01
2814 3232 9.897744 TTGAAGAACAAGATTGTGTGAATATTC 57.102 29.630 8.60 8.60 41.31 1.75
2815 3233 9.065798 TGAAGAACAAGATTGTGTGAATATTCA 57.934 29.630 14.23 14.23 41.31 2.57
2817 3235 9.850628 AAGAACAAGATTGTGTGAATATTCATG 57.149 29.630 20.65 14.06 41.31 3.07
2818 3236 9.017509 AGAACAAGATTGTGTGAATATTCATGT 57.982 29.630 20.65 14.64 41.31 3.21
2819 3237 9.630098 GAACAAGATTGTGTGAATATTCATGTT 57.370 29.630 20.65 20.96 41.31 2.71
2820 3238 9.985730 AACAAGATTGTGTGAATATTCATGTTT 57.014 25.926 20.65 6.09 41.31 2.83
2824 3242 9.466497 AGATTGTGTGAATATTCATGTTTACCT 57.534 29.630 20.65 10.30 39.73 3.08
2826 3244 9.859427 ATTGTGTGAATATTCATGTTTACCTTG 57.141 29.630 20.65 0.00 39.73 3.61
2827 3245 8.628630 TGTGTGAATATTCATGTTTACCTTGA 57.371 30.769 20.65 0.00 39.73 3.02
2828 3246 9.072375 TGTGTGAATATTCATGTTTACCTTGAA 57.928 29.630 20.65 0.00 40.34 2.69
2829 3247 9.559958 GTGTGAATATTCATGTTTACCTTGAAG 57.440 33.333 20.65 0.00 39.67 3.02
2830 3248 9.513906 TGTGAATATTCATGTTTACCTTGAAGA 57.486 29.630 20.65 0.00 39.67 2.87
2831 3249 9.774742 GTGAATATTCATGTTTACCTTGAAGAC 57.225 33.333 20.65 0.00 39.67 3.01
2832 3250 9.513906 TGAATATTCATGTTTACCTTGAAGACA 57.486 29.630 14.23 0.00 39.67 3.41
2835 3253 9.685276 ATATTCATGTTTACCTTGAAGACATCA 57.315 29.630 0.00 0.00 39.67 3.07
2836 3254 8.585471 ATTCATGTTTACCTTGAAGACATCAT 57.415 30.769 0.00 0.00 39.67 2.45
2837 3255 7.381766 TCATGTTTACCTTGAAGACATCATG 57.618 36.000 0.00 2.94 38.03 3.07
2838 3256 6.942005 TCATGTTTACCTTGAAGACATCATGT 59.058 34.615 0.00 0.00 38.03 3.21
2839 3257 7.448161 TCATGTTTACCTTGAAGACATCATGTT 59.552 33.333 0.00 0.00 38.03 2.71
2840 3258 8.729756 CATGTTTACCTTGAAGACATCATGTTA 58.270 33.333 0.00 0.00 38.03 2.41
2841 3259 8.684386 TGTTTACCTTGAAGACATCATGTTAA 57.316 30.769 0.00 0.00 38.03 2.01
2842 3260 9.295825 TGTTTACCTTGAAGACATCATGTTAAT 57.704 29.630 0.00 0.00 38.03 1.40
2843 3261 9.559958 GTTTACCTTGAAGACATCATGTTAATG 57.440 33.333 0.00 0.00 38.03 1.90
2844 3262 9.513906 TTTACCTTGAAGACATCATGTTAATGA 57.486 29.630 0.00 0.00 46.71 2.57
2845 3263 9.513906 TTACCTTGAAGACATCATGTTAATGAA 57.486 29.630 0.00 0.00 45.81 2.57
2846 3264 8.048534 ACCTTGAAGACATCATGTTAATGAAG 57.951 34.615 0.00 0.00 45.81 3.02
2847 3265 7.884877 ACCTTGAAGACATCATGTTAATGAAGA 59.115 33.333 0.00 0.00 45.81 2.87
2848 3266 8.396390 CCTTGAAGACATCATGTTAATGAAGAG 58.604 37.037 0.00 0.00 45.81 2.85
2849 3267 9.159364 CTTGAAGACATCATGTTAATGAAGAGA 57.841 33.333 0.00 0.00 45.81 3.10
2850 3268 8.713737 TGAAGACATCATGTTAATGAAGAGAG 57.286 34.615 0.00 0.00 45.81 3.20
2851 3269 8.316946 TGAAGACATCATGTTAATGAAGAGAGT 58.683 33.333 0.00 0.00 45.81 3.24
2852 3270 9.160496 GAAGACATCATGTTAATGAAGAGAGTT 57.840 33.333 0.00 0.00 45.81 3.01
2853 3271 8.489990 AGACATCATGTTAATGAAGAGAGTTG 57.510 34.615 0.00 0.00 45.81 3.16
2854 3272 7.551974 AGACATCATGTTAATGAAGAGAGTTGG 59.448 37.037 0.00 0.00 45.81 3.77
2855 3273 7.397221 ACATCATGTTAATGAAGAGAGTTGGA 58.603 34.615 0.20 0.00 45.81 3.53
2856 3274 7.884877 ACATCATGTTAATGAAGAGAGTTGGAA 59.115 33.333 0.20 0.00 45.81 3.53
2857 3275 8.733458 CATCATGTTAATGAAGAGAGTTGGAAA 58.267 33.333 0.00 0.00 45.81 3.13
2858 3276 8.690203 TCATGTTAATGAAGAGAGTTGGAAAA 57.310 30.769 0.00 0.00 39.92 2.29
2859 3277 9.130661 TCATGTTAATGAAGAGAGTTGGAAAAA 57.869 29.630 0.00 0.00 39.92 1.94
2860 3278 9.918630 CATGTTAATGAAGAGAGTTGGAAAAAT 57.081 29.630 0.00 0.00 35.67 1.82
2862 3280 9.965824 TGTTAATGAAGAGAGTTGGAAAAATTC 57.034 29.630 0.00 0.00 0.00 2.17
2863 3281 9.965824 GTTAATGAAGAGAGTTGGAAAAATTCA 57.034 29.630 0.00 0.00 0.00 2.57
2866 3284 7.042797 TGAAGAGAGTTGGAAAAATTCAAGG 57.957 36.000 0.00 0.00 0.00 3.61
2867 3285 6.607198 TGAAGAGAGTTGGAAAAATTCAAGGT 59.393 34.615 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 159 7.049754 ACCTGAAGAAAATTTGAAAGTGCAAT 58.950 30.769 0.00 0.00 0.00 3.56
280 329 3.319689 TTTTGGAAATGTCCGAACCTTCC 59.680 43.478 3.81 0.00 45.56 3.46
356 405 8.874816 GGAAATGTTTAAGTACAAAACAAAGCA 58.125 29.630 22.55 6.90 46.59 3.91
365 414 6.056884 ACAGACCGGAAATGTTTAAGTACAA 58.943 36.000 9.46 0.00 0.00 2.41
376 425 8.679100 TGGTAATATAAAAACAGACCGGAAATG 58.321 33.333 9.46 6.06 0.00 2.32
421 471 5.832539 AGACTTGATCTCTTCCCTCAAAA 57.167 39.130 0.00 0.00 28.16 2.44
422 472 5.187967 GGTAGACTTGATCTCTTCCCTCAAA 59.812 44.000 0.00 0.00 39.04 2.69
424 475 4.282496 GGTAGACTTGATCTCTTCCCTCA 58.718 47.826 0.00 0.00 39.04 3.86
426 477 3.053544 TCGGTAGACTTGATCTCTTCCCT 60.054 47.826 0.00 0.00 39.04 4.20
491 550 4.928020 ACGGATTCTCGGAAAAGAGTAAAC 59.072 41.667 0.00 0.00 39.21 2.01
493 552 4.219070 TGACGGATTCTCGGAAAAGAGTAA 59.781 41.667 0.00 0.00 39.21 2.24
516 575 7.360575 ACGTCTTTCTCAATTAATAAAGCGT 57.639 32.000 16.41 16.41 37.13 5.07
524 583 6.365050 GGCGTAAAACGTCTTTCTCAATTAA 58.635 36.000 1.07 0.00 43.82 1.40
525 584 5.388682 CGGCGTAAAACGTCTTTCTCAATTA 60.389 40.000 0.00 0.00 45.21 1.40
526 585 4.609783 CGGCGTAAAACGTCTTTCTCAATT 60.610 41.667 0.00 0.00 45.21 2.32
529 588 1.788308 CGGCGTAAAACGTCTTTCTCA 59.212 47.619 0.00 0.00 45.21 3.27
614 681 5.067674 GTGGCATTGCTAAATCACAGGATTA 59.932 40.000 8.82 0.00 42.87 1.75
620 687 2.158559 ACGTGGCATTGCTAAATCACA 58.841 42.857 8.82 0.00 0.00 3.58
632 699 1.449601 GGGATTGTCGACGTGGCAT 60.450 57.895 11.62 0.00 0.00 4.40
660 727 4.487714 TTTCAACCTTGAGTGAGTGAGT 57.512 40.909 0.00 0.00 38.61 3.41
661 728 7.496529 TTATTTTCAACCTTGAGTGAGTGAG 57.503 36.000 0.00 0.00 38.61 3.51
662 729 7.201785 GGTTTATTTTCAACCTTGAGTGAGTGA 60.202 37.037 0.00 0.00 40.66 3.41
663 730 6.918022 GGTTTATTTTCAACCTTGAGTGAGTG 59.082 38.462 0.00 0.00 40.66 3.51
685 752 2.158519 ACCAAACTCTTTGATCCCGGTT 60.159 45.455 0.00 0.00 43.26 4.44
696 763 1.072331 AGATCGGCACACCAAACTCTT 59.928 47.619 0.00 0.00 34.57 2.85
711 778 6.451393 CCTAAACTTCTAATCCTGGAGATCG 58.549 44.000 1.52 0.00 32.47 3.69
715 782 5.959583 ACCCTAAACTTCTAATCCTGGAG 57.040 43.478 1.52 0.00 0.00 3.86
717 784 6.481643 TCAAACCCTAAACTTCTAATCCTGG 58.518 40.000 0.00 0.00 0.00 4.45
725 792 8.478775 AAAGCTAAATCAAACCCTAAACTTCT 57.521 30.769 0.00 0.00 0.00 2.85
787 854 1.329599 GTCGACATACGGCATTTTCCC 59.670 52.381 11.55 0.00 46.56 3.97
788 855 2.732001 GTCGACATACGGCATTTTCC 57.268 50.000 11.55 0.00 46.56 3.13
795 862 0.660595 CCTGATCGTCGACATACGGC 60.661 60.000 17.16 0.00 43.05 5.68
796 863 0.661552 ACCTGATCGTCGACATACGG 59.338 55.000 17.16 10.89 43.05 4.02
797 864 2.109463 CAACCTGATCGTCGACATACG 58.891 52.381 17.16 1.66 44.19 3.06
798 865 3.106672 GACAACCTGATCGTCGACATAC 58.893 50.000 17.16 6.16 0.00 2.39
799 866 3.014623 AGACAACCTGATCGTCGACATA 58.985 45.455 17.16 2.88 34.80 2.29
800 867 1.819288 AGACAACCTGATCGTCGACAT 59.181 47.619 17.16 8.24 34.80 3.06
801 868 1.068541 CAGACAACCTGATCGTCGACA 60.069 52.381 17.16 3.13 45.78 4.35
802 869 1.199327 TCAGACAACCTGATCGTCGAC 59.801 52.381 5.18 5.18 46.38 4.20
803 870 1.530323 TCAGACAACCTGATCGTCGA 58.470 50.000 0.00 0.00 46.38 4.20
829 896 2.100631 GTGTGCTGCCGACGCTATT 61.101 57.895 0.00 0.00 35.36 1.73
848 917 7.368059 GGTCGGACAGATTTTAAAAGATTTGT 58.632 34.615 10.76 7.71 0.00 2.83
867 936 2.512286 AGATACGCGACGGTCGGA 60.512 61.111 29.30 4.53 40.84 4.55
931 1000 2.224523 TGTCTTTTGTGCGAGGAGGATT 60.225 45.455 0.00 0.00 0.00 3.01
941 1010 2.935849 CCTTTGGGTTTGTCTTTTGTGC 59.064 45.455 0.00 0.00 0.00 4.57
944 1013 3.258971 TGCCTTTGGGTTTGTCTTTTG 57.741 42.857 0.00 0.00 34.45 2.44
945 1014 3.990959 TTGCCTTTGGGTTTGTCTTTT 57.009 38.095 0.00 0.00 34.45 2.27
947 1016 3.605634 GTTTTGCCTTTGGGTTTGTCTT 58.394 40.909 0.00 0.00 34.45 3.01
949 1018 1.930503 CGTTTTGCCTTTGGGTTTGTC 59.069 47.619 0.00 0.00 34.45 3.18
950 1019 1.276705 ACGTTTTGCCTTTGGGTTTGT 59.723 42.857 0.00 0.00 34.45 2.83
951 1020 2.017138 ACGTTTTGCCTTTGGGTTTG 57.983 45.000 0.00 0.00 34.45 2.93
952 1021 4.557097 CGTATACGTTTTGCCTTTGGGTTT 60.557 41.667 17.16 0.00 32.77 3.27
953 1022 3.058085 CGTATACGTTTTGCCTTTGGGTT 60.058 43.478 17.16 0.00 32.77 4.11
954 1023 2.485038 CGTATACGTTTTGCCTTTGGGT 59.515 45.455 17.16 0.00 32.77 4.51
955 1024 3.125698 CGTATACGTTTTGCCTTTGGG 57.874 47.619 17.16 0.00 34.11 4.12
1004 1073 5.901552 TCGCTCAAAAGGAAATCTGTTTTT 58.098 33.333 0.00 0.00 0.00 1.94
1005 1074 5.514274 TCGCTCAAAAGGAAATCTGTTTT 57.486 34.783 0.00 0.00 0.00 2.43
1006 1075 5.514274 TTCGCTCAAAAGGAAATCTGTTT 57.486 34.783 0.00 0.00 0.00 2.83
1034 1103 4.899052 CGTCACGTTCTATGTATCTCTTCG 59.101 45.833 0.00 0.00 0.00 3.79
1161 1233 1.204941 GAAGGACGTGTACAGGAGCAT 59.795 52.381 21.70 8.29 0.00 3.79
1358 1433 1.374125 CCCATTGTCGACGTGCAGA 60.374 57.895 11.62 0.00 0.00 4.26
1359 1434 3.027170 GCCCATTGTCGACGTGCAG 62.027 63.158 11.62 7.66 0.00 4.41
1601 1676 2.753029 GTGAAGGACTGCCAGGCT 59.247 61.111 14.15 0.00 36.29 4.58
1886 2290 1.279558 TGTGGTGTGTGTTGTGTACCT 59.720 47.619 0.00 0.00 32.68 3.08
1888 2292 1.668751 CCTGTGGTGTGTGTTGTGTAC 59.331 52.381 0.00 0.00 0.00 2.90
1920 2326 1.074926 GCTCCTCAGGGATCTGGGA 60.075 63.158 0.00 0.25 44.15 4.37
1926 2332 2.003548 GGGTTGGCTCCTCAGGGAT 61.004 63.158 0.00 0.00 41.36 3.85
2023 2429 0.960364 TGTTCGCAAAGATCCTGCCC 60.960 55.000 10.87 2.04 36.40 5.36
2032 2438 1.192534 GTCGACTTCCTGTTCGCAAAG 59.807 52.381 8.70 0.00 0.00 2.77
2035 2441 0.103390 TTGTCGACTTCCTGTTCGCA 59.897 50.000 17.92 0.00 0.00 5.10
2069 2475 1.226859 CTTCTCCGCCGCGTTGATA 60.227 57.895 12.58 0.00 0.00 2.15
2076 2482 3.880846 CCAATGCTTCTCCGCCGC 61.881 66.667 0.00 0.00 0.00 6.53
2079 2485 0.383231 CCAATCCAATGCTTCTCCGC 59.617 55.000 0.00 0.00 0.00 5.54
2163 2569 4.328983 CAGATACTCGTGCGTGGTTATTTT 59.671 41.667 0.00 0.00 0.00 1.82
2174 2581 0.857935 GCATCTGCAGATACTCGTGC 59.142 55.000 28.27 23.10 41.59 5.34
2308 2715 2.461110 CGGTTTCCCAATCGAGGCG 61.461 63.158 0.00 0.00 38.98 5.52
2326 2733 3.608474 GCAACGGTTGTTTGTGGATCTAC 60.608 47.826 20.92 1.56 35.72 2.59
2336 2748 0.820871 ATGGTGTGCAACGGTTGTTT 59.179 45.000 20.92 0.00 42.39 2.83
2340 2752 2.887783 TGAAATATGGTGTGCAACGGTT 59.112 40.909 0.00 0.00 42.39 4.44
2345 2757 5.981088 AAGATGTGAAATATGGTGTGCAA 57.019 34.783 0.00 0.00 0.00 4.08
2346 2758 7.338957 TGATTAAGATGTGAAATATGGTGTGCA 59.661 33.333 0.00 0.00 0.00 4.57
2365 2777 5.983720 CACACCCTATAACCTCGTGATTAAG 59.016 44.000 0.00 0.00 0.00 1.85
2377 2789 0.465642 GCCAGCCCACACCCTATAAC 60.466 60.000 0.00 0.00 0.00 1.89
2380 2796 3.797353 CGCCAGCCCACACCCTAT 61.797 66.667 0.00 0.00 0.00 2.57
2390 2806 2.399356 GCTAGGTTCAACGCCAGCC 61.399 63.158 0.00 0.00 0.00 4.85
2392 2808 0.320771 AGTGCTAGGTTCAACGCCAG 60.321 55.000 0.00 0.00 0.00 4.85
2393 2809 0.970640 TAGTGCTAGGTTCAACGCCA 59.029 50.000 0.00 0.00 0.00 5.69
2394 2810 2.311124 ATAGTGCTAGGTTCAACGCC 57.689 50.000 0.00 0.00 0.00 5.68
2395 2811 5.986004 AAATATAGTGCTAGGTTCAACGC 57.014 39.130 0.00 0.00 0.00 4.84
2475 2893 1.445238 GGTCTGCAGAGTCAGCGAC 60.445 63.158 18.89 17.65 35.96 5.19
2489 2907 2.301738 GGCCCTTGCAGGTAGGTCT 61.302 63.158 2.31 0.00 40.13 3.85
2508 2926 1.072332 ATGCACTGTTGGCCGTGTA 59.928 52.632 9.81 6.12 33.78 2.90
2510 2928 2.256158 CATGCACTGTTGGCCGTG 59.744 61.111 0.00 0.34 0.00 4.94
2519 2937 4.124351 CGCTTGGGCCATGCACTG 62.124 66.667 34.78 20.27 34.78 3.66
2520 2938 4.666253 ACGCTTGGGCCATGCACT 62.666 61.111 34.78 21.14 34.78 4.40
2535 2953 1.153784 GGTTGGGAATGCATGCACG 60.154 57.895 25.37 0.00 0.00 5.34
2538 2956 1.153509 GCAGGTTGGGAATGCATGC 60.154 57.895 11.82 11.82 39.75 4.06
2544 2962 0.179004 TCAACGTGCAGGTTGGGAAT 60.179 50.000 37.74 12.09 45.66 3.01
2555 2973 2.223479 ACCACATGTTCTTTCAACGTGC 60.223 45.455 0.00 0.00 39.98 5.34
2556 2974 3.362295 CACCACATGTTCTTTCAACGTG 58.638 45.455 0.00 5.35 41.58 4.49
2575 2993 0.472044 AAAACCAAACATGGGGGCAC 59.528 50.000 0.00 0.00 0.00 5.01
2576 2994 0.471617 CAAAACCAAACATGGGGGCA 59.528 50.000 0.00 0.00 0.00 5.36
2577 2995 0.250684 CCAAAACCAAACATGGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
2578 2996 1.135960 ACCAAAACCAAACATGGGGG 58.864 50.000 0.00 0.00 37.26 5.40
2579 2997 4.632327 ATTACCAAAACCAAACATGGGG 57.368 40.909 0.00 0.00 37.26 4.96
2580 2998 5.615289 TCAATTACCAAAACCAAACATGGG 58.385 37.500 0.00 0.00 37.26 4.00
2581 2999 6.933521 TCATCAATTACCAAAACCAAACATGG 59.066 34.615 0.00 0.00 38.91 3.66
2582 3000 7.440556 TGTCATCAATTACCAAAACCAAACATG 59.559 33.333 0.00 0.00 0.00 3.21
2583 3001 7.504403 TGTCATCAATTACCAAAACCAAACAT 58.496 30.769 0.00 0.00 0.00 2.71
2584 3002 6.878317 TGTCATCAATTACCAAAACCAAACA 58.122 32.000 0.00 0.00 0.00 2.83
2585 3003 7.778470 TTGTCATCAATTACCAAAACCAAAC 57.222 32.000 0.00 0.00 0.00 2.93
2586 3004 8.428063 AGATTGTCATCAATTACCAAAACCAAA 58.572 29.630 0.00 0.00 43.33 3.28
2587 3005 7.961351 AGATTGTCATCAATTACCAAAACCAA 58.039 30.769 0.00 0.00 43.33 3.67
2588 3006 7.451255 AGAGATTGTCATCAATTACCAAAACCA 59.549 33.333 0.00 0.00 43.33 3.67
2589 3007 7.830739 AGAGATTGTCATCAATTACCAAAACC 58.169 34.615 0.00 0.00 43.33 3.27
2592 3010 9.123902 CCATAGAGATTGTCATCAATTACCAAA 57.876 33.333 0.00 0.00 43.33 3.28
2593 3011 8.493607 TCCATAGAGATTGTCATCAATTACCAA 58.506 33.333 0.00 0.00 43.33 3.67
2594 3012 7.933577 GTCCATAGAGATTGTCATCAATTACCA 59.066 37.037 0.00 0.00 43.33 3.25
2595 3013 8.153550 AGTCCATAGAGATTGTCATCAATTACC 58.846 37.037 0.00 0.00 43.33 2.85
2599 3017 9.775854 CTTTAGTCCATAGAGATTGTCATCAAT 57.224 33.333 0.00 0.00 45.57 2.57
2600 3018 8.206867 CCTTTAGTCCATAGAGATTGTCATCAA 58.793 37.037 0.00 0.00 37.98 2.57
2601 3019 7.345653 ACCTTTAGTCCATAGAGATTGTCATCA 59.654 37.037 0.00 0.00 0.00 3.07
2602 3020 7.731054 ACCTTTAGTCCATAGAGATTGTCATC 58.269 38.462 0.00 0.00 0.00 2.92
2603 3021 7.682787 ACCTTTAGTCCATAGAGATTGTCAT 57.317 36.000 0.00 0.00 0.00 3.06
2604 3022 7.331026 CAACCTTTAGTCCATAGAGATTGTCA 58.669 38.462 0.00 0.00 0.00 3.58
2605 3023 6.258947 GCAACCTTTAGTCCATAGAGATTGTC 59.741 42.308 0.00 0.00 0.00 3.18
2606 3024 6.116126 GCAACCTTTAGTCCATAGAGATTGT 58.884 40.000 0.00 0.00 0.00 2.71
2607 3025 5.529060 GGCAACCTTTAGTCCATAGAGATTG 59.471 44.000 0.00 0.00 0.00 2.67
2608 3026 5.430089 AGGCAACCTTTAGTCCATAGAGATT 59.570 40.000 0.00 0.00 37.17 2.40
2609 3027 4.971924 AGGCAACCTTTAGTCCATAGAGAT 59.028 41.667 0.00 0.00 37.17 2.75
2610 3028 4.362677 AGGCAACCTTTAGTCCATAGAGA 58.637 43.478 0.00 0.00 37.17 3.10
2611 3029 4.762289 AGGCAACCTTTAGTCCATAGAG 57.238 45.455 0.00 0.00 37.17 2.43
2612 3030 4.534500 TCAAGGCAACCTTTAGTCCATAGA 59.466 41.667 0.00 0.00 41.69 1.98
2613 3031 4.843728 TCAAGGCAACCTTTAGTCCATAG 58.156 43.478 0.00 0.00 41.69 2.23
2614 3032 4.288626 ACTCAAGGCAACCTTTAGTCCATA 59.711 41.667 7.28 0.00 42.35 2.74
2615 3033 3.074538 ACTCAAGGCAACCTTTAGTCCAT 59.925 43.478 7.28 0.00 42.35 3.41
2616 3034 2.441750 ACTCAAGGCAACCTTTAGTCCA 59.558 45.455 7.28 0.00 42.35 4.02
2617 3035 3.141767 ACTCAAGGCAACCTTTAGTCC 57.858 47.619 7.28 0.00 42.35 3.85
2618 3036 8.507524 AATATAACTCAAGGCAACCTTTAGTC 57.492 34.615 12.37 0.00 44.37 2.59
2619 3037 8.739972 CAAATATAACTCAAGGCAACCTTTAGT 58.260 33.333 7.28 7.28 46.28 2.24
2620 3038 8.956426 TCAAATATAACTCAAGGCAACCTTTAG 58.044 33.333 6.11 6.11 41.69 1.85
2621 3039 8.871629 TCAAATATAACTCAAGGCAACCTTTA 57.128 30.769 0.00 0.00 41.69 1.85
2622 3040 7.775053 TCAAATATAACTCAAGGCAACCTTT 57.225 32.000 0.00 0.00 41.69 3.11
2623 3041 7.093771 CCTTCAAATATAACTCAAGGCAACCTT 60.094 37.037 0.00 0.00 45.88 3.50
2624 3042 6.378280 CCTTCAAATATAACTCAAGGCAACCT 59.622 38.462 0.00 0.00 33.87 3.50
2625 3043 6.405842 CCCTTCAAATATAACTCAAGGCAACC 60.406 42.308 0.00 0.00 30.77 3.77
2626 3044 6.152831 ACCCTTCAAATATAACTCAAGGCAAC 59.847 38.462 0.00 0.00 30.77 4.17
2627 3045 6.252995 ACCCTTCAAATATAACTCAAGGCAA 58.747 36.000 0.00 0.00 30.77 4.52
2628 3046 5.826643 ACCCTTCAAATATAACTCAAGGCA 58.173 37.500 0.00 0.00 30.77 4.75
2629 3047 6.775594 AACCCTTCAAATATAACTCAAGGC 57.224 37.500 0.00 0.00 30.77 4.35
2630 3048 8.122472 ACAAACCCTTCAAATATAACTCAAGG 57.878 34.615 0.00 0.00 0.00 3.61
2631 3049 8.244113 GGACAAACCCTTCAAATATAACTCAAG 58.756 37.037 0.00 0.00 0.00 3.02
2632 3050 7.726291 TGGACAAACCCTTCAAATATAACTCAA 59.274 33.333 0.00 0.00 38.00 3.02
2633 3051 7.235079 TGGACAAACCCTTCAAATATAACTCA 58.765 34.615 0.00 0.00 38.00 3.41
2634 3052 7.696992 TGGACAAACCCTTCAAATATAACTC 57.303 36.000 0.00 0.00 38.00 3.01
2635 3053 9.408648 CTATGGACAAACCCTTCAAATATAACT 57.591 33.333 0.00 0.00 38.00 2.24
2636 3054 8.630037 CCTATGGACAAACCCTTCAAATATAAC 58.370 37.037 0.00 0.00 38.00 1.89
2637 3055 8.340757 ACCTATGGACAAACCCTTCAAATATAA 58.659 33.333 0.00 0.00 38.00 0.98
2638 3056 7.878495 ACCTATGGACAAACCCTTCAAATATA 58.122 34.615 0.00 0.00 38.00 0.86
2639 3057 6.741724 ACCTATGGACAAACCCTTCAAATAT 58.258 36.000 0.00 0.00 38.00 1.28
2640 3058 6.147437 ACCTATGGACAAACCCTTCAAATA 57.853 37.500 0.00 0.00 38.00 1.40
2641 3059 5.010708 ACCTATGGACAAACCCTTCAAAT 57.989 39.130 0.00 0.00 38.00 2.32
2642 3060 4.463050 ACCTATGGACAAACCCTTCAAA 57.537 40.909 0.00 0.00 38.00 2.69
2643 3061 5.789574 ATACCTATGGACAAACCCTTCAA 57.210 39.130 0.00 0.00 38.00 2.69
2644 3062 5.505780 CAATACCTATGGACAAACCCTTCA 58.494 41.667 0.00 0.00 38.00 3.02
2645 3063 4.338400 GCAATACCTATGGACAAACCCTTC 59.662 45.833 0.00 0.00 38.00 3.46
2646 3064 4.017499 AGCAATACCTATGGACAAACCCTT 60.017 41.667 0.00 0.00 38.00 3.95
2647 3065 3.527665 AGCAATACCTATGGACAAACCCT 59.472 43.478 0.00 0.00 38.00 4.34
2648 3066 3.898482 AGCAATACCTATGGACAAACCC 58.102 45.455 0.00 0.00 38.00 4.11
2649 3067 4.947388 TCAAGCAATACCTATGGACAAACC 59.053 41.667 0.00 0.00 39.54 3.27
2650 3068 6.374333 TCTTCAAGCAATACCTATGGACAAAC 59.626 38.462 0.00 0.00 0.00 2.93
2651 3069 6.374333 GTCTTCAAGCAATACCTATGGACAAA 59.626 38.462 0.00 0.00 0.00 2.83
2652 3070 5.880332 GTCTTCAAGCAATACCTATGGACAA 59.120 40.000 0.00 0.00 0.00 3.18
2653 3071 5.428253 GTCTTCAAGCAATACCTATGGACA 58.572 41.667 0.00 0.00 0.00 4.02
2654 3072 4.816925 GGTCTTCAAGCAATACCTATGGAC 59.183 45.833 0.00 0.00 30.05 4.02
2655 3073 4.473196 TGGTCTTCAAGCAATACCTATGGA 59.527 41.667 0.00 0.00 33.25 3.41
2656 3074 4.780815 TGGTCTTCAAGCAATACCTATGG 58.219 43.478 0.00 0.00 33.25 2.74
2657 3075 6.949352 AATGGTCTTCAAGCAATACCTATG 57.051 37.500 0.00 0.00 39.21 2.23
2658 3076 6.891908 ACAAATGGTCTTCAAGCAATACCTAT 59.108 34.615 0.00 0.00 39.21 2.57
2659 3077 6.245408 ACAAATGGTCTTCAAGCAATACCTA 58.755 36.000 0.00 0.00 39.21 3.08
2660 3078 5.079643 ACAAATGGTCTTCAAGCAATACCT 58.920 37.500 0.00 0.00 39.21 3.08
2661 3079 5.391312 ACAAATGGTCTTCAAGCAATACC 57.609 39.130 0.00 0.00 39.21 2.73
2662 3080 5.634859 CCAACAAATGGTCTTCAAGCAATAC 59.365 40.000 0.00 0.00 44.85 1.89
2663 3081 5.782047 CCAACAAATGGTCTTCAAGCAATA 58.218 37.500 0.00 0.00 44.85 1.90
2664 3082 4.634199 CCAACAAATGGTCTTCAAGCAAT 58.366 39.130 0.00 0.00 44.85 3.56
2665 3083 4.057406 CCAACAAATGGTCTTCAAGCAA 57.943 40.909 0.00 0.00 44.85 3.91
2666 3084 3.731652 CCAACAAATGGTCTTCAAGCA 57.268 42.857 0.00 0.00 44.85 3.91
2677 3095 6.920758 TCGAATAACCTTGAAACCAACAAATG 59.079 34.615 0.00 0.00 0.00 2.32
2678 3096 7.045126 TCGAATAACCTTGAAACCAACAAAT 57.955 32.000 0.00 0.00 0.00 2.32
2679 3097 6.452494 TCGAATAACCTTGAAACCAACAAA 57.548 33.333 0.00 0.00 0.00 2.83
2680 3098 6.319152 TCTTCGAATAACCTTGAAACCAACAA 59.681 34.615 0.00 0.00 0.00 2.83
2681 3099 5.823570 TCTTCGAATAACCTTGAAACCAACA 59.176 36.000 0.00 0.00 0.00 3.33
2682 3100 6.308371 TCTTCGAATAACCTTGAAACCAAC 57.692 37.500 0.00 0.00 0.00 3.77
2683 3101 6.768861 TCTTCTTCGAATAACCTTGAAACCAA 59.231 34.615 0.00 0.00 0.00 3.67
2684 3102 6.292923 TCTTCTTCGAATAACCTTGAAACCA 58.707 36.000 0.00 0.00 0.00 3.67
2685 3103 6.796705 TCTTCTTCGAATAACCTTGAAACC 57.203 37.500 0.00 0.00 0.00 3.27
2688 3106 9.667107 ACATATTCTTCTTCGAATAACCTTGAA 57.333 29.630 0.00 0.00 38.82 2.69
2689 3107 9.098355 CACATATTCTTCTTCGAATAACCTTGA 57.902 33.333 0.00 0.00 38.82 3.02
2690 3108 8.883731 ACACATATTCTTCTTCGAATAACCTTG 58.116 33.333 0.00 0.00 38.82 3.61
2691 3109 9.449719 AACACATATTCTTCTTCGAATAACCTT 57.550 29.630 0.00 0.00 38.82 3.50
2692 3110 8.883731 CAACACATATTCTTCTTCGAATAACCT 58.116 33.333 0.00 0.00 38.82 3.50
2693 3111 8.879759 TCAACACATATTCTTCTTCGAATAACC 58.120 33.333 0.00 0.00 38.82 2.85
2694 3112 9.690434 GTCAACACATATTCTTCTTCGAATAAC 57.310 33.333 0.00 0.00 38.82 1.89
2695 3113 8.879759 GGTCAACACATATTCTTCTTCGAATAA 58.120 33.333 0.00 0.00 38.82 1.40
2696 3114 8.038351 TGGTCAACACATATTCTTCTTCGAATA 58.962 33.333 0.00 0.00 39.44 1.75
2697 3115 6.878923 TGGTCAACACATATTCTTCTTCGAAT 59.121 34.615 0.00 0.00 37.40 3.34
2698 3116 6.227522 TGGTCAACACATATTCTTCTTCGAA 58.772 36.000 0.00 0.00 0.00 3.71
2699 3117 5.789521 TGGTCAACACATATTCTTCTTCGA 58.210 37.500 0.00 0.00 0.00 3.71
2700 3118 6.402550 CCTTGGTCAACACATATTCTTCTTCG 60.403 42.308 0.00 0.00 0.00 3.79
2701 3119 6.431234 ACCTTGGTCAACACATATTCTTCTTC 59.569 38.462 0.00 0.00 0.00 2.87
2702 3120 6.207417 CACCTTGGTCAACACATATTCTTCTT 59.793 38.462 0.00 0.00 0.00 2.52
2703 3121 5.707298 CACCTTGGTCAACACATATTCTTCT 59.293 40.000 0.00 0.00 0.00 2.85
2704 3122 5.619981 GCACCTTGGTCAACACATATTCTTC 60.620 44.000 0.00 0.00 0.00 2.87
2705 3123 4.218417 GCACCTTGGTCAACACATATTCTT 59.782 41.667 0.00 0.00 0.00 2.52
2706 3124 3.758554 GCACCTTGGTCAACACATATTCT 59.241 43.478 0.00 0.00 0.00 2.40
2707 3125 3.758554 AGCACCTTGGTCAACACATATTC 59.241 43.478 0.00 0.00 0.00 1.75
2708 3126 3.766545 AGCACCTTGGTCAACACATATT 58.233 40.909 0.00 0.00 0.00 1.28
2709 3127 3.439857 AGCACCTTGGTCAACACATAT 57.560 42.857 0.00 0.00 0.00 1.78
2710 3128 2.949177 AGCACCTTGGTCAACACATA 57.051 45.000 0.00 0.00 0.00 2.29
2711 3129 2.949177 TAGCACCTTGGTCAACACAT 57.051 45.000 0.00 0.00 0.00 3.21
2712 3130 2.949177 ATAGCACCTTGGTCAACACA 57.051 45.000 0.00 0.00 0.00 3.72
2713 3131 3.146066 TGAATAGCACCTTGGTCAACAC 58.854 45.455 0.00 0.00 0.00 3.32
2714 3132 3.500448 TGAATAGCACCTTGGTCAACA 57.500 42.857 0.00 0.00 0.00 3.33
2715 3133 3.191371 CCTTGAATAGCACCTTGGTCAAC 59.809 47.826 0.00 0.00 0.00 3.18
2716 3134 3.073798 TCCTTGAATAGCACCTTGGTCAA 59.926 43.478 0.00 0.00 0.00 3.18
2717 3135 2.642311 TCCTTGAATAGCACCTTGGTCA 59.358 45.455 0.00 0.00 0.00 4.02
2718 3136 3.350219 TCCTTGAATAGCACCTTGGTC 57.650 47.619 0.00 0.00 0.00 4.02
2719 3137 4.322057 AATCCTTGAATAGCACCTTGGT 57.678 40.909 0.00 0.00 0.00 3.67
2720 3138 6.015940 GGATAAATCCTTGAATAGCACCTTGG 60.016 42.308 1.52 0.00 43.73 3.61
2721 3139 6.974965 GGATAAATCCTTGAATAGCACCTTG 58.025 40.000 1.52 0.00 43.73 3.61
2737 3155 9.565213 CTCAAGTGACAAATCTTTGGATAAATC 57.435 33.333 7.51 0.00 42.34 2.17
2738 3156 9.300681 TCTCAAGTGACAAATCTTTGGATAAAT 57.699 29.630 7.51 0.00 42.34 1.40
2739 3157 8.690203 TCTCAAGTGACAAATCTTTGGATAAA 57.310 30.769 7.51 0.00 42.34 1.40
2740 3158 7.939039 ACTCTCAAGTGACAAATCTTTGGATAA 59.061 33.333 7.51 0.00 37.10 1.75
2741 3159 7.453393 ACTCTCAAGTGACAAATCTTTGGATA 58.547 34.615 7.51 0.00 37.10 2.59
2742 3160 6.302269 ACTCTCAAGTGACAAATCTTTGGAT 58.698 36.000 7.51 0.00 37.10 3.41
2743 3161 5.684704 ACTCTCAAGTGACAAATCTTTGGA 58.315 37.500 7.51 0.00 37.10 3.53
2744 3162 6.038603 TCAACTCTCAAGTGACAAATCTTTGG 59.961 38.462 7.51 0.00 37.91 3.28
2745 3163 7.019774 TCAACTCTCAAGTGACAAATCTTTG 57.980 36.000 1.19 1.19 38.80 2.77
2746 3164 6.238593 GCTCAACTCTCAAGTGACAAATCTTT 60.239 38.462 0.00 0.00 35.36 2.52
2747 3165 5.238214 GCTCAACTCTCAAGTGACAAATCTT 59.762 40.000 0.00 0.00 35.36 2.40
2748 3166 4.754114 GCTCAACTCTCAAGTGACAAATCT 59.246 41.667 0.00 0.00 35.36 2.40
2749 3167 4.083590 GGCTCAACTCTCAAGTGACAAATC 60.084 45.833 0.00 0.00 35.36 2.17
2750 3168 3.817647 GGCTCAACTCTCAAGTGACAAAT 59.182 43.478 0.00 0.00 35.36 2.32
2751 3169 3.118261 AGGCTCAACTCTCAAGTGACAAA 60.118 43.478 0.00 0.00 35.36 2.83
2752 3170 2.435805 AGGCTCAACTCTCAAGTGACAA 59.564 45.455 0.00 0.00 35.36 3.18
2753 3171 2.042464 AGGCTCAACTCTCAAGTGACA 58.958 47.619 0.00 0.00 35.36 3.58
2754 3172 2.829741 AGGCTCAACTCTCAAGTGAC 57.170 50.000 0.00 0.00 35.36 3.67
2755 3173 4.825422 CAATAGGCTCAACTCTCAAGTGA 58.175 43.478 0.00 0.00 35.36 3.41
2756 3174 3.373439 GCAATAGGCTCAACTCTCAAGTG 59.627 47.826 0.00 0.00 40.25 3.16
2757 3175 3.008375 TGCAATAGGCTCAACTCTCAAGT 59.992 43.478 0.00 0.00 45.15 3.16
2758 3176 3.603532 TGCAATAGGCTCAACTCTCAAG 58.396 45.455 0.00 0.00 45.15 3.02
2759 3177 3.701205 TGCAATAGGCTCAACTCTCAA 57.299 42.857 0.00 0.00 45.15 3.02
2760 3178 3.603532 CTTGCAATAGGCTCAACTCTCA 58.396 45.455 0.00 0.00 45.15 3.27
2761 3179 2.354199 GCTTGCAATAGGCTCAACTCTC 59.646 50.000 0.00 0.00 45.15 3.20
2762 3180 2.290514 TGCTTGCAATAGGCTCAACTCT 60.291 45.455 0.00 0.00 45.15 3.24
2763 3181 2.086869 TGCTTGCAATAGGCTCAACTC 58.913 47.619 0.00 0.00 45.15 3.01
2764 3182 2.205022 TGCTTGCAATAGGCTCAACT 57.795 45.000 0.00 0.00 45.15 3.16
2765 3183 2.165030 ACATGCTTGCAATAGGCTCAAC 59.835 45.455 0.00 0.00 45.15 3.18
2766 3184 2.424601 GACATGCTTGCAATAGGCTCAA 59.575 45.455 0.00 0.00 45.15 3.02
2767 3185 2.019249 GACATGCTTGCAATAGGCTCA 58.981 47.619 0.00 0.00 45.15 4.26
2768 3186 2.295885 AGACATGCTTGCAATAGGCTC 58.704 47.619 0.00 0.00 45.15 4.70
2769 3187 2.426024 CAAGACATGCTTGCAATAGGCT 59.574 45.455 14.20 0.00 46.67 4.58
2770 3188 2.805845 CAAGACATGCTTGCAATAGGC 58.194 47.619 14.20 0.00 46.67 3.93
2788 3206 9.897744 GAATATTCACACAATCTTGTTCTTCAA 57.102 29.630 10.68 0.00 39.91 2.69
2789 3207 9.065798 TGAATATTCACACAATCTTGTTCTTCA 57.934 29.630 14.23 0.00 33.71 3.02
2791 3209 9.850628 CATGAATATTCACACAATCTTGTTCTT 57.149 29.630 20.19 0.00 40.49 2.52
2792 3210 9.017509 ACATGAATATTCACACAATCTTGTTCT 57.982 29.630 20.19 0.00 40.49 3.01
2793 3211 9.630098 AACATGAATATTCACACAATCTTGTTC 57.370 29.630 20.19 0.00 40.49 3.18
2794 3212 9.985730 AAACATGAATATTCACACAATCTTGTT 57.014 25.926 20.19 18.71 40.49 2.83
2798 3216 9.466497 AGGTAAACATGAATATTCACACAATCT 57.534 29.630 20.19 8.15 40.49 2.40
2800 3218 9.859427 CAAGGTAAACATGAATATTCACACAAT 57.141 29.630 20.19 8.65 40.49 2.71
2801 3219 9.072375 TCAAGGTAAACATGAATATTCACACAA 57.928 29.630 20.19 3.15 40.49 3.33
2802 3220 8.628630 TCAAGGTAAACATGAATATTCACACA 57.371 30.769 20.19 0.00 40.49 3.72
2803 3221 9.559958 CTTCAAGGTAAACATGAATATTCACAC 57.440 33.333 20.19 12.25 40.49 3.82
2804 3222 9.513906 TCTTCAAGGTAAACATGAATATTCACA 57.486 29.630 20.19 0.00 40.49 3.58
2805 3223 9.774742 GTCTTCAAGGTAAACATGAATATTCAC 57.225 33.333 20.19 6.62 40.49 3.18
2806 3224 9.513906 TGTCTTCAAGGTAAACATGAATATTCA 57.486 29.630 20.07 20.07 42.14 2.57
2809 3227 9.685276 TGATGTCTTCAAGGTAAACATGAATAT 57.315 29.630 0.00 0.00 33.03 1.28
2810 3228 9.685276 ATGATGTCTTCAAGGTAAACATGAATA 57.315 29.630 0.00 0.00 38.03 1.75
2811 3229 8.464404 CATGATGTCTTCAAGGTAAACATGAAT 58.536 33.333 0.00 0.00 38.03 2.57
2812 3230 7.448161 ACATGATGTCTTCAAGGTAAACATGAA 59.552 33.333 0.00 0.00 38.03 2.57
2813 3231 6.942005 ACATGATGTCTTCAAGGTAAACATGA 59.058 34.615 0.00 0.83 38.03 3.07
2814 3232 7.149569 ACATGATGTCTTCAAGGTAAACATG 57.850 36.000 0.00 0.00 38.03 3.21
2815 3233 7.765695 AACATGATGTCTTCAAGGTAAACAT 57.234 32.000 0.00 0.00 38.03 2.71
2816 3234 8.684386 TTAACATGATGTCTTCAAGGTAAACA 57.316 30.769 0.00 0.00 33.49 2.83
2817 3235 9.559958 CATTAACATGATGTCTTCAAGGTAAAC 57.440 33.333 0.00 0.00 38.36 2.01
2818 3236 9.513906 TCATTAACATGATGTCTTCAAGGTAAA 57.486 29.630 0.00 0.00 38.36 2.01
2819 3237 9.513906 TTCATTAACATGATGTCTTCAAGGTAA 57.486 29.630 0.00 4.51 38.99 2.85
2820 3238 9.166173 CTTCATTAACATGATGTCTTCAAGGTA 57.834 33.333 0.00 0.00 39.28 3.08
2821 3239 7.884877 TCTTCATTAACATGATGTCTTCAAGGT 59.115 33.333 0.00 0.00 39.28 3.50
2822 3240 8.272545 TCTTCATTAACATGATGTCTTCAAGG 57.727 34.615 0.00 0.00 39.28 3.61
2823 3241 9.159364 TCTCTTCATTAACATGATGTCTTCAAG 57.841 33.333 0.00 0.00 39.28 3.02
2824 3242 9.159364 CTCTCTTCATTAACATGATGTCTTCAA 57.841 33.333 0.00 0.00 39.28 2.69
2825 3243 8.316946 ACTCTCTTCATTAACATGATGTCTTCA 58.683 33.333 0.00 0.00 39.28 3.02
2826 3244 8.715191 ACTCTCTTCATTAACATGATGTCTTC 57.285 34.615 0.00 0.00 39.28 2.87
2827 3245 8.944029 CAACTCTCTTCATTAACATGATGTCTT 58.056 33.333 0.00 0.00 39.28 3.01
2828 3246 7.551974 CCAACTCTCTTCATTAACATGATGTCT 59.448 37.037 0.00 0.00 39.28 3.41
2829 3247 7.550551 TCCAACTCTCTTCATTAACATGATGTC 59.449 37.037 0.00 0.00 39.28 3.06
2830 3248 7.397221 TCCAACTCTCTTCATTAACATGATGT 58.603 34.615 0.00 0.00 39.28 3.06
2831 3249 7.854557 TCCAACTCTCTTCATTAACATGATG 57.145 36.000 0.00 0.00 39.28 3.07
2832 3250 8.868522 TTTCCAACTCTCTTCATTAACATGAT 57.131 30.769 0.00 0.00 39.28 2.45
2833 3251 8.690203 TTTTCCAACTCTCTTCATTAACATGA 57.310 30.769 0.00 0.00 37.67 3.07
2834 3252 9.918630 ATTTTTCCAACTCTCTTCATTAACATG 57.081 29.630 0.00 0.00 0.00 3.21
2836 3254 9.965824 GAATTTTTCCAACTCTCTTCATTAACA 57.034 29.630 0.00 0.00 0.00 2.41
2837 3255 9.965824 TGAATTTTTCCAACTCTCTTCATTAAC 57.034 29.630 0.00 0.00 0.00 2.01
2840 3258 8.146412 CCTTGAATTTTTCCAACTCTCTTCATT 58.854 33.333 0.00 0.00 0.00 2.57
2841 3259 7.288621 ACCTTGAATTTTTCCAACTCTCTTCAT 59.711 33.333 0.00 0.00 0.00 2.57
2842 3260 6.607198 ACCTTGAATTTTTCCAACTCTCTTCA 59.393 34.615 0.00 0.00 0.00 3.02
2843 3261 7.043961 ACCTTGAATTTTTCCAACTCTCTTC 57.956 36.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.