Multiple sequence alignment - TraesCS3B01G279000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G279000 | chr3B | 100.000 | 3755 | 0 | 0 | 1 | 3755 | 448783451 | 448779697 | 0.000000e+00 | 6935 |
1 | TraesCS3B01G279000 | chr2B | 97.197 | 1962 | 37 | 9 | 1805 | 3755 | 40314954 | 40313000 | 0.000000e+00 | 3302 |
2 | TraesCS3B01G279000 | chr2B | 95.363 | 1186 | 36 | 4 | 202 | 1370 | 40317097 | 40315914 | 0.000000e+00 | 1868 |
3 | TraesCS3B01G279000 | chr5B | 97.044 | 1962 | 41 | 7 | 1805 | 3755 | 493690323 | 493688368 | 0.000000e+00 | 3286 |
4 | TraesCS3B01G279000 | chr5B | 95.639 | 1628 | 51 | 9 | 202 | 1812 | 493692710 | 493691086 | 0.000000e+00 | 2595 |
5 | TraesCS3B01G279000 | chr7B | 97.044 | 1962 | 39 | 9 | 1805 | 3755 | 195785993 | 195784040 | 0.000000e+00 | 3284 |
6 | TraesCS3B01G279000 | chr7B | 93.255 | 682 | 27 | 4 | 202 | 866 | 195787334 | 195786655 | 0.000000e+00 | 987 |
7 | TraesCS3B01G279000 | chr1A | 96.993 | 1962 | 39 | 10 | 1805 | 3755 | 96435273 | 96433321 | 0.000000e+00 | 3278 |
8 | TraesCS3B01G279000 | chr1A | 93.548 | 682 | 25 | 4 | 202 | 866 | 96436614 | 96435935 | 0.000000e+00 | 998 |
9 | TraesCS3B01G279000 | chr1A | 95.098 | 612 | 25 | 3 | 3144 | 3755 | 34344784 | 34345390 | 0.000000e+00 | 959 |
10 | TraesCS3B01G279000 | chr5D | 96.589 | 1964 | 46 | 9 | 1805 | 3755 | 505355056 | 505353101 | 0.000000e+00 | 3236 |
11 | TraesCS3B01G279000 | chr5D | 93.413 | 835 | 29 | 10 | 198 | 1012 | 505356602 | 505355774 | 0.000000e+00 | 1214 |
12 | TraesCS3B01G279000 | chr6B | 95.084 | 1953 | 72 | 8 | 1813 | 3755 | 616357583 | 616359521 | 0.000000e+00 | 3053 |
13 | TraesCS3B01G279000 | chr5A | 91.662 | 1979 | 123 | 17 | 1805 | 3755 | 307219980 | 307221944 | 0.000000e+00 | 2702 |
14 | TraesCS3B01G279000 | chr5A | 81.661 | 289 | 40 | 9 | 199 | 484 | 307217210 | 307217488 | 1.050000e-55 | 228 |
15 | TraesCS3B01G279000 | chr4B | 91.460 | 1979 | 129 | 14 | 1805 | 3755 | 301786169 | 301784203 | 0.000000e+00 | 2682 |
16 | TraesCS3B01G279000 | chr4B | 86.829 | 1640 | 168 | 33 | 202 | 1812 | 301869487 | 301867867 | 0.000000e+00 | 1788 |
17 | TraesCS3B01G279000 | chr4B | 86.792 | 1643 | 167 | 34 | 202 | 1812 | 301901514 | 301899890 | 0.000000e+00 | 1786 |
18 | TraesCS3B01G279000 | chr4B | 86.524 | 1640 | 173 | 33 | 202 | 1812 | 301788555 | 301786935 | 0.000000e+00 | 1760 |
19 | TraesCS3B01G279000 | chr4B | 86.280 | 1640 | 176 | 33 | 202 | 1812 | 301707679 | 301706060 | 0.000000e+00 | 1736 |
20 | TraesCS3B01G279000 | chr4A | 94.782 | 1629 | 61 | 8 | 202 | 1812 | 731916772 | 731915150 | 0.000000e+00 | 2516 |
21 | TraesCS3B01G279000 | chr4A | 90.388 | 1238 | 102 | 9 | 2528 | 3755 | 578769505 | 578770735 | 0.000000e+00 | 1611 |
22 | TraesCS3B01G279000 | chr4D | 94.424 | 1632 | 54 | 10 | 203 | 1812 | 25467229 | 25468845 | 0.000000e+00 | 2475 |
23 | TraesCS3B01G279000 | chr2D | 95.532 | 1298 | 45 | 8 | 1805 | 3091 | 34034957 | 34036252 | 0.000000e+00 | 2063 |
24 | TraesCS3B01G279000 | chr6A | 94.713 | 1305 | 55 | 9 | 1804 | 3096 | 29789591 | 29788289 | 0.000000e+00 | 2015 |
25 | TraesCS3B01G279000 | chr7A | 86.957 | 1633 | 187 | 19 | 198 | 1812 | 555085701 | 555087325 | 0.000000e+00 | 1812 |
26 | TraesCS3B01G279000 | chr7A | 94.955 | 1011 | 25 | 6 | 202 | 1195 | 692012511 | 692013512 | 0.000000e+00 | 1561 |
27 | TraesCS3B01G279000 | chr7A | 97.409 | 656 | 17 | 0 | 3100 | 3755 | 692014650 | 692015305 | 0.000000e+00 | 1118 |
28 | TraesCS3B01G279000 | chr7A | 91.200 | 500 | 32 | 5 | 2706 | 3195 | 664365423 | 664365920 | 0.000000e+00 | 669 |
29 | TraesCS3B01G279000 | chrUn | 86.646 | 1640 | 171 | 33 | 202 | 1812 | 315979343 | 315980963 | 0.000000e+00 | 1772 |
30 | TraesCS3B01G279000 | chr3A | 92.683 | 82 | 6 | 0 | 119 | 200 | 468007710 | 468007629 | 6.590000e-23 | 119 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G279000 | chr3B | 448779697 | 448783451 | 3754 | True | 6935.0 | 6935 | 100.0000 | 1 | 3755 | 1 | chr3B.!!$R1 | 3754 |
1 | TraesCS3B01G279000 | chr2B | 40313000 | 40317097 | 4097 | True | 2585.0 | 3302 | 96.2800 | 202 | 3755 | 2 | chr2B.!!$R1 | 3553 |
2 | TraesCS3B01G279000 | chr5B | 493688368 | 493692710 | 4342 | True | 2940.5 | 3286 | 96.3415 | 202 | 3755 | 2 | chr5B.!!$R1 | 3553 |
3 | TraesCS3B01G279000 | chr7B | 195784040 | 195787334 | 3294 | True | 2135.5 | 3284 | 95.1495 | 202 | 3755 | 2 | chr7B.!!$R1 | 3553 |
4 | TraesCS3B01G279000 | chr1A | 96433321 | 96436614 | 3293 | True | 2138.0 | 3278 | 95.2705 | 202 | 3755 | 2 | chr1A.!!$R1 | 3553 |
5 | TraesCS3B01G279000 | chr1A | 34344784 | 34345390 | 606 | False | 959.0 | 959 | 95.0980 | 3144 | 3755 | 1 | chr1A.!!$F1 | 611 |
6 | TraesCS3B01G279000 | chr5D | 505353101 | 505356602 | 3501 | True | 2225.0 | 3236 | 95.0010 | 198 | 3755 | 2 | chr5D.!!$R1 | 3557 |
7 | TraesCS3B01G279000 | chr6B | 616357583 | 616359521 | 1938 | False | 3053.0 | 3053 | 95.0840 | 1813 | 3755 | 1 | chr6B.!!$F1 | 1942 |
8 | TraesCS3B01G279000 | chr5A | 307217210 | 307221944 | 4734 | False | 1465.0 | 2702 | 86.6615 | 199 | 3755 | 2 | chr5A.!!$F1 | 3556 |
9 | TraesCS3B01G279000 | chr4B | 301784203 | 301788555 | 4352 | True | 2221.0 | 2682 | 88.9920 | 202 | 3755 | 2 | chr4B.!!$R4 | 3553 |
10 | TraesCS3B01G279000 | chr4B | 301867867 | 301869487 | 1620 | True | 1788.0 | 1788 | 86.8290 | 202 | 1812 | 1 | chr4B.!!$R2 | 1610 |
11 | TraesCS3B01G279000 | chr4B | 301899890 | 301901514 | 1624 | True | 1786.0 | 1786 | 86.7920 | 202 | 1812 | 1 | chr4B.!!$R3 | 1610 |
12 | TraesCS3B01G279000 | chr4B | 301706060 | 301707679 | 1619 | True | 1736.0 | 1736 | 86.2800 | 202 | 1812 | 1 | chr4B.!!$R1 | 1610 |
13 | TraesCS3B01G279000 | chr4A | 731915150 | 731916772 | 1622 | True | 2516.0 | 2516 | 94.7820 | 202 | 1812 | 1 | chr4A.!!$R1 | 1610 |
14 | TraesCS3B01G279000 | chr4A | 578769505 | 578770735 | 1230 | False | 1611.0 | 1611 | 90.3880 | 2528 | 3755 | 1 | chr4A.!!$F1 | 1227 |
15 | TraesCS3B01G279000 | chr4D | 25467229 | 25468845 | 1616 | False | 2475.0 | 2475 | 94.4240 | 203 | 1812 | 1 | chr4D.!!$F1 | 1609 |
16 | TraesCS3B01G279000 | chr2D | 34034957 | 34036252 | 1295 | False | 2063.0 | 2063 | 95.5320 | 1805 | 3091 | 1 | chr2D.!!$F1 | 1286 |
17 | TraesCS3B01G279000 | chr6A | 29788289 | 29789591 | 1302 | True | 2015.0 | 2015 | 94.7130 | 1804 | 3096 | 1 | chr6A.!!$R1 | 1292 |
18 | TraesCS3B01G279000 | chr7A | 555085701 | 555087325 | 1624 | False | 1812.0 | 1812 | 86.9570 | 198 | 1812 | 1 | chr7A.!!$F1 | 1614 |
19 | TraesCS3B01G279000 | chr7A | 692012511 | 692015305 | 2794 | False | 1339.5 | 1561 | 96.1820 | 202 | 3755 | 2 | chr7A.!!$F3 | 3553 |
20 | TraesCS3B01G279000 | chrUn | 315979343 | 315980963 | 1620 | False | 1772.0 | 1772 | 86.6460 | 202 | 1812 | 1 | chrUn.!!$F1 | 1610 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
635 | 1053 | 0.039074 | CCTATCCAGGCGACGCTTAG | 60.039 | 60.0 | 20.77 | 5.25 | 34.35 | 2.18 | F |
960 | 1383 | 1.555967 | GGCTCAACCTCTCTCTCTGT | 58.444 | 55.0 | 0.00 | 0.00 | 34.51 | 3.41 | F |
1347 | 1922 | 2.159057 | GGGTGGCCATTTGATCATCAAC | 60.159 | 50.0 | 9.72 | 0.00 | 35.89 | 3.18 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1537 | 2112 | 1.623811 | ACTATCGGAACCAACACTGCT | 59.376 | 47.619 | 0.0 | 0.0 | 0.00 | 4.24 | R |
2317 | 3999 | 2.799412 | CACTCTCACTCACTTCTGCAAC | 59.201 | 50.000 | 0.0 | 0.0 | 0.00 | 4.17 | R |
2957 | 4652 | 5.611374 | TGAAAGTAGAGCTAGTGCAGTTTT | 58.389 | 37.500 | 0.0 | 0.0 | 42.74 | 2.43 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 3.689347 | TGCATTCATGTAGAGCCTTTGT | 58.311 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
22 | 23 | 3.691118 | TGCATTCATGTAGAGCCTTTGTC | 59.309 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
23 | 24 | 3.065925 | GCATTCATGTAGAGCCTTTGTCC | 59.934 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
24 | 25 | 4.521146 | CATTCATGTAGAGCCTTTGTCCT | 58.479 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
25 | 26 | 5.674525 | CATTCATGTAGAGCCTTTGTCCTA | 58.325 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
26 | 27 | 5.957771 | TTCATGTAGAGCCTTTGTCCTAT | 57.042 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
27 | 28 | 7.445121 | CATTCATGTAGAGCCTTTGTCCTATA | 58.555 | 38.462 | 0.00 | 0.00 | 0.00 | 1.31 |
28 | 29 | 6.656632 | TCATGTAGAGCCTTTGTCCTATAG | 57.343 | 41.667 | 0.00 | 0.00 | 0.00 | 1.31 |
29 | 30 | 6.136857 | TCATGTAGAGCCTTTGTCCTATAGT | 58.863 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
30 | 31 | 6.611642 | TCATGTAGAGCCTTTGTCCTATAGTT | 59.388 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
31 | 32 | 6.466885 | TGTAGAGCCTTTGTCCTATAGTTC | 57.533 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
32 | 33 | 6.195700 | TGTAGAGCCTTTGTCCTATAGTTCT | 58.804 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
33 | 34 | 7.351952 | TGTAGAGCCTTTGTCCTATAGTTCTA | 58.648 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
34 | 35 | 7.837689 | TGTAGAGCCTTTGTCCTATAGTTCTAA | 59.162 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
35 | 36 | 7.922699 | AGAGCCTTTGTCCTATAGTTCTAAT | 57.077 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
36 | 37 | 7.958088 | AGAGCCTTTGTCCTATAGTTCTAATC | 58.042 | 38.462 | 0.00 | 0.00 | 0.00 | 1.75 |
37 | 38 | 7.787424 | AGAGCCTTTGTCCTATAGTTCTAATCT | 59.213 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
38 | 39 | 9.080097 | GAGCCTTTGTCCTATAGTTCTAATCTA | 57.920 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
39 | 40 | 8.862085 | AGCCTTTGTCCTATAGTTCTAATCTAC | 58.138 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
40 | 41 | 8.639761 | GCCTTTGTCCTATAGTTCTAATCTACA | 58.360 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
45 | 46 | 9.877222 | TGTCCTATAGTTCTAATCTACAATCCA | 57.123 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
87 | 88 | 8.528044 | AACAAGGTTATGTTTCCACTTTAGAA | 57.472 | 30.769 | 0.00 | 0.00 | 40.52 | 2.10 |
88 | 89 | 8.528044 | ACAAGGTTATGTTTCCACTTTAGAAA | 57.472 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
89 | 90 | 8.973182 | ACAAGGTTATGTTTCCACTTTAGAAAA | 58.027 | 29.630 | 0.00 | 0.00 | 35.13 | 2.29 |
90 | 91 | 9.981114 | CAAGGTTATGTTTCCACTTTAGAAAAT | 57.019 | 29.630 | 0.00 | 0.00 | 35.13 | 1.82 |
92 | 93 | 9.588096 | AGGTTATGTTTCCACTTTAGAAAATCT | 57.412 | 29.630 | 0.00 | 0.00 | 35.13 | 2.40 |
93 | 94 | 9.841880 | GGTTATGTTTCCACTTTAGAAAATCTC | 57.158 | 33.333 | 0.00 | 0.00 | 35.13 | 2.75 |
94 | 95 | 9.841880 | GTTATGTTTCCACTTTAGAAAATCTCC | 57.158 | 33.333 | 0.00 | 0.00 | 35.13 | 3.71 |
95 | 96 | 9.581289 | TTATGTTTCCACTTTAGAAAATCTCCA | 57.419 | 29.630 | 0.00 | 0.00 | 35.13 | 3.86 |
96 | 97 | 7.889873 | TGTTTCCACTTTAGAAAATCTCCAA | 57.110 | 32.000 | 0.00 | 0.00 | 35.13 | 3.53 |
97 | 98 | 8.477419 | TGTTTCCACTTTAGAAAATCTCCAAT | 57.523 | 30.769 | 0.00 | 0.00 | 35.13 | 3.16 |
98 | 99 | 8.359642 | TGTTTCCACTTTAGAAAATCTCCAATG | 58.640 | 33.333 | 0.00 | 0.00 | 35.13 | 2.82 |
99 | 100 | 8.360390 | GTTTCCACTTTAGAAAATCTCCAATGT | 58.640 | 33.333 | 0.00 | 0.00 | 35.13 | 2.71 |
100 | 101 | 9.581289 | TTTCCACTTTAGAAAATCTCCAATGTA | 57.419 | 29.630 | 0.00 | 0.00 | 30.48 | 2.29 |
101 | 102 | 8.792830 | TCCACTTTAGAAAATCTCCAATGTAG | 57.207 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
102 | 103 | 8.602424 | TCCACTTTAGAAAATCTCCAATGTAGA | 58.398 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
103 | 104 | 9.401058 | CCACTTTAGAAAATCTCCAATGTAGAT | 57.599 | 33.333 | 0.00 | 0.00 | 35.17 | 1.98 |
112 | 113 | 8.753497 | AAATCTCCAATGTAGATTAGGAAACC | 57.247 | 34.615 | 1.46 | 0.00 | 41.68 | 3.27 |
113 | 114 | 7.698163 | ATCTCCAATGTAGATTAGGAAACCT | 57.302 | 36.000 | 0.00 | 0.00 | 37.71 | 3.50 |
114 | 115 | 6.889198 | TCTCCAATGTAGATTAGGAAACCTG | 58.111 | 40.000 | 0.00 | 0.00 | 34.61 | 4.00 |
115 | 116 | 6.672218 | TCTCCAATGTAGATTAGGAAACCTGA | 59.328 | 38.462 | 0.00 | 0.00 | 34.61 | 3.86 |
116 | 117 | 7.348274 | TCTCCAATGTAGATTAGGAAACCTGAT | 59.652 | 37.037 | 0.00 | 0.00 | 34.61 | 2.90 |
117 | 118 | 7.872138 | TCCAATGTAGATTAGGAAACCTGATT | 58.128 | 34.615 | 0.00 | 0.00 | 34.61 | 2.57 |
118 | 119 | 7.993183 | TCCAATGTAGATTAGGAAACCTGATTC | 59.007 | 37.037 | 0.00 | 0.00 | 34.61 | 2.52 |
119 | 120 | 7.995488 | CCAATGTAGATTAGGAAACCTGATTCT | 59.005 | 37.037 | 0.00 | 0.00 | 34.61 | 2.40 |
123 | 124 | 8.204836 | TGTAGATTAGGAAACCTGATTCTAAGC | 58.795 | 37.037 | 0.00 | 0.00 | 34.61 | 3.09 |
124 | 125 | 7.200434 | AGATTAGGAAACCTGATTCTAAGCA | 57.800 | 36.000 | 0.00 | 0.00 | 34.61 | 3.91 |
125 | 126 | 7.278875 | AGATTAGGAAACCTGATTCTAAGCAG | 58.721 | 38.462 | 0.98 | 0.98 | 41.86 | 4.24 |
135 | 136 | 6.360844 | CTGATTCTAAGCAGGTCATTTGAG | 57.639 | 41.667 | 0.00 | 0.00 | 38.70 | 3.02 |
136 | 137 | 6.053632 | TGATTCTAAGCAGGTCATTTGAGA | 57.946 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
137 | 138 | 6.475504 | TGATTCTAAGCAGGTCATTTGAGAA | 58.524 | 36.000 | 0.00 | 0.00 | 0.00 | 2.87 |
138 | 139 | 6.596888 | TGATTCTAAGCAGGTCATTTGAGAAG | 59.403 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
139 | 140 | 5.489792 | TCTAAGCAGGTCATTTGAGAAGT | 57.510 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
140 | 141 | 5.240891 | TCTAAGCAGGTCATTTGAGAAGTG | 58.759 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
141 | 142 | 2.787994 | AGCAGGTCATTTGAGAAGTGG | 58.212 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
142 | 143 | 2.373169 | AGCAGGTCATTTGAGAAGTGGA | 59.627 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
143 | 144 | 2.485814 | GCAGGTCATTTGAGAAGTGGAC | 59.514 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
144 | 145 | 3.743521 | CAGGTCATTTGAGAAGTGGACA | 58.256 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
145 | 146 | 3.499918 | CAGGTCATTTGAGAAGTGGACAC | 59.500 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
146 | 147 | 3.392616 | AGGTCATTTGAGAAGTGGACACT | 59.607 | 43.478 | 0.00 | 0.00 | 44.94 | 3.55 |
147 | 148 | 3.499918 | GGTCATTTGAGAAGTGGACACTG | 59.500 | 47.826 | 5.63 | 0.00 | 41.58 | 3.66 |
148 | 149 | 4.380531 | GTCATTTGAGAAGTGGACACTGA | 58.619 | 43.478 | 5.63 | 0.00 | 41.58 | 3.41 |
149 | 150 | 4.999950 | GTCATTTGAGAAGTGGACACTGAT | 59.000 | 41.667 | 5.63 | 0.00 | 41.58 | 2.90 |
150 | 151 | 6.166279 | GTCATTTGAGAAGTGGACACTGATA | 58.834 | 40.000 | 5.63 | 0.00 | 41.58 | 2.15 |
151 | 152 | 6.650807 | GTCATTTGAGAAGTGGACACTGATAA | 59.349 | 38.462 | 5.63 | 0.00 | 41.58 | 1.75 |
152 | 153 | 6.650807 | TCATTTGAGAAGTGGACACTGATAAC | 59.349 | 38.462 | 5.63 | 0.00 | 41.58 | 1.89 |
153 | 154 | 5.545063 | TTGAGAAGTGGACACTGATAACA | 57.455 | 39.130 | 5.63 | 0.81 | 41.58 | 2.41 |
154 | 155 | 5.745312 | TGAGAAGTGGACACTGATAACAT | 57.255 | 39.130 | 5.63 | 0.00 | 41.58 | 2.71 |
155 | 156 | 5.724328 | TGAGAAGTGGACACTGATAACATC | 58.276 | 41.667 | 5.63 | 0.00 | 41.58 | 3.06 |
156 | 157 | 5.245977 | TGAGAAGTGGACACTGATAACATCA | 59.754 | 40.000 | 5.63 | 1.16 | 41.58 | 3.07 |
157 | 158 | 6.070596 | TGAGAAGTGGACACTGATAACATCAT | 60.071 | 38.462 | 5.63 | 0.00 | 41.58 | 2.45 |
158 | 159 | 6.111382 | AGAAGTGGACACTGATAACATCATG | 58.889 | 40.000 | 5.63 | 0.00 | 41.58 | 3.07 |
159 | 160 | 5.426689 | AGTGGACACTGATAACATCATGT | 57.573 | 39.130 | 3.82 | 0.00 | 40.75 | 3.21 |
160 | 161 | 5.423015 | AGTGGACACTGATAACATCATGTC | 58.577 | 41.667 | 3.82 | 15.67 | 41.60 | 3.06 |
161 | 162 | 5.046376 | AGTGGACACTGATAACATCATGTCA | 60.046 | 40.000 | 20.56 | 11.82 | 42.68 | 3.58 |
162 | 163 | 5.819379 | GTGGACACTGATAACATCATGTCAT | 59.181 | 40.000 | 20.56 | 0.00 | 42.68 | 3.06 |
163 | 164 | 5.818857 | TGGACACTGATAACATCATGTCATG | 59.181 | 40.000 | 20.56 | 6.47 | 42.68 | 3.07 |
164 | 165 | 5.277683 | GGACACTGATAACATCATGTCATGC | 60.278 | 44.000 | 20.56 | 0.00 | 42.68 | 4.06 |
165 | 166 | 5.434408 | ACACTGATAACATCATGTCATGCT | 58.566 | 37.500 | 8.03 | 0.00 | 38.85 | 3.79 |
166 | 167 | 5.884232 | ACACTGATAACATCATGTCATGCTT | 59.116 | 36.000 | 8.03 | 2.36 | 38.85 | 3.91 |
167 | 168 | 7.049754 | ACACTGATAACATCATGTCATGCTTA | 58.950 | 34.615 | 8.03 | 4.36 | 38.85 | 3.09 |
168 | 169 | 7.226128 | ACACTGATAACATCATGTCATGCTTAG | 59.774 | 37.037 | 8.03 | 0.77 | 38.85 | 2.18 |
169 | 170 | 7.440255 | CACTGATAACATCATGTCATGCTTAGA | 59.560 | 37.037 | 8.03 | 0.00 | 38.85 | 2.10 |
170 | 171 | 7.989170 | ACTGATAACATCATGTCATGCTTAGAA | 59.011 | 33.333 | 8.03 | 0.00 | 38.85 | 2.10 |
171 | 172 | 8.913487 | TGATAACATCATGTCATGCTTAGAAT | 57.087 | 30.769 | 8.03 | 0.00 | 33.59 | 2.40 |
172 | 173 | 8.996271 | TGATAACATCATGTCATGCTTAGAATC | 58.004 | 33.333 | 8.03 | 7.26 | 33.59 | 2.52 |
173 | 174 | 8.913487 | ATAACATCATGTCATGCTTAGAATCA | 57.087 | 30.769 | 8.03 | 0.00 | 0.00 | 2.57 |
174 | 175 | 7.634671 | AACATCATGTCATGCTTAGAATCAA | 57.365 | 32.000 | 8.03 | 0.00 | 0.00 | 2.57 |
175 | 176 | 7.260558 | ACATCATGTCATGCTTAGAATCAAG | 57.739 | 36.000 | 8.03 | 0.00 | 0.00 | 3.02 |
184 | 185 | 4.308899 | GCTTAGAATCAAGCTCGTAGGA | 57.691 | 45.455 | 9.18 | 0.00 | 46.04 | 2.94 |
185 | 186 | 4.295051 | GCTTAGAATCAAGCTCGTAGGAG | 58.705 | 47.826 | 8.10 | 8.10 | 46.04 | 3.69 |
186 | 187 | 4.202070 | GCTTAGAATCAAGCTCGTAGGAGT | 60.202 | 45.833 | 13.65 | 0.00 | 46.04 | 3.85 |
187 | 188 | 5.008811 | GCTTAGAATCAAGCTCGTAGGAGTA | 59.991 | 44.000 | 13.65 | 0.00 | 46.04 | 2.59 |
188 | 189 | 4.904253 | AGAATCAAGCTCGTAGGAGTAC | 57.096 | 45.455 | 13.65 | 0.00 | 42.53 | 2.73 |
189 | 190 | 4.528920 | AGAATCAAGCTCGTAGGAGTACT | 58.471 | 43.478 | 13.65 | 0.00 | 42.53 | 2.73 |
190 | 191 | 5.682659 | AGAATCAAGCTCGTAGGAGTACTA | 58.317 | 41.667 | 13.65 | 0.00 | 42.53 | 1.82 |
191 | 192 | 6.300703 | AGAATCAAGCTCGTAGGAGTACTAT | 58.699 | 40.000 | 13.65 | 1.51 | 42.53 | 2.12 |
192 | 193 | 6.428771 | AGAATCAAGCTCGTAGGAGTACTATC | 59.571 | 42.308 | 13.65 | 6.32 | 42.53 | 2.08 |
193 | 194 | 5.032327 | TCAAGCTCGTAGGAGTACTATCA | 57.968 | 43.478 | 13.65 | 0.00 | 42.53 | 2.15 |
194 | 195 | 5.434408 | TCAAGCTCGTAGGAGTACTATCAA | 58.566 | 41.667 | 13.65 | 0.00 | 42.53 | 2.57 |
195 | 196 | 6.062749 | TCAAGCTCGTAGGAGTACTATCAAT | 58.937 | 40.000 | 13.65 | 0.00 | 42.53 | 2.57 |
196 | 197 | 6.205076 | TCAAGCTCGTAGGAGTACTATCAATC | 59.795 | 42.308 | 13.65 | 0.00 | 42.53 | 2.67 |
200 | 201 | 7.388500 | AGCTCGTAGGAGTACTATCAATCTTAC | 59.612 | 40.741 | 13.65 | 0.00 | 42.53 | 2.34 |
269 | 270 | 2.036346 | GCCATCCAACAAAGCTTCAGTT | 59.964 | 45.455 | 0.00 | 5.36 | 0.00 | 3.16 |
328 | 329 | 1.672854 | CCATCGCCGTTAGTCTCCCA | 61.673 | 60.000 | 0.00 | 0.00 | 0.00 | 4.37 |
396 | 402 | 2.489938 | ACCCTCGCTGCAGATTAAAA | 57.510 | 45.000 | 20.43 | 0.00 | 0.00 | 1.52 |
397 | 403 | 2.790433 | ACCCTCGCTGCAGATTAAAAA | 58.210 | 42.857 | 20.43 | 0.00 | 0.00 | 1.94 |
433 | 443 | 2.583441 | CCCGCACCTGACTCTCCAA | 61.583 | 63.158 | 0.00 | 0.00 | 0.00 | 3.53 |
635 | 1053 | 0.039074 | CCTATCCAGGCGACGCTTAG | 60.039 | 60.000 | 20.77 | 5.25 | 34.35 | 2.18 |
862 | 1283 | 2.639347 | TGCTCTTCCCAAGATCAACTCA | 59.361 | 45.455 | 0.00 | 0.00 | 36.82 | 3.41 |
960 | 1383 | 1.555967 | GGCTCAACCTCTCTCTCTGT | 58.444 | 55.000 | 0.00 | 0.00 | 34.51 | 3.41 |
1119 | 1679 | 5.011840 | TGGCAGTGAATCAAAAATCAATGGA | 59.988 | 36.000 | 0.00 | 0.00 | 40.81 | 3.41 |
1128 | 1688 | 9.649167 | GAATCAAAAATCAATGGAGATTCAACT | 57.351 | 29.630 | 0.00 | 0.00 | 39.53 | 3.16 |
1327 | 1902 | 7.013274 | TGTTTGACTGTTTTGAGAAGAATAGGG | 59.987 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
1347 | 1922 | 2.159057 | GGGTGGCCATTTGATCATCAAC | 60.159 | 50.000 | 9.72 | 0.00 | 35.89 | 3.18 |
1537 | 2112 | 6.846505 | AGATGAGGAGGACCAATACTCAATTA | 59.153 | 38.462 | 0.00 | 0.00 | 41.03 | 1.40 |
2038 | 3719 | 7.766219 | ATAGCATACTTAAACAAGTACCACG | 57.234 | 36.000 | 0.00 | 0.00 | 38.01 | 4.94 |
2091 | 3772 | 5.892348 | ACCTCCTCAAAAGTGGATTATGTT | 58.108 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
2106 | 3787 | 9.816354 | GTGGATTATGTTACAAATAATTTGGCT | 57.184 | 29.630 | 0.00 | 0.00 | 44.81 | 4.75 |
2317 | 3999 | 9.939802 | TTGAATATGAGAGAATAGATGACATGG | 57.060 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
2881 | 4565 | 6.712547 | ACTCATGTAGGGACAAAAGAAAGAAG | 59.287 | 38.462 | 0.00 | 0.00 | 39.59 | 2.85 |
2910 | 4596 | 8.303876 | ACCCATTACAAAAGCTATTTGTACAAG | 58.696 | 33.333 | 22.63 | 17.39 | 42.49 | 3.16 |
2911 | 4597 | 8.303876 | CCCATTACAAAAGCTATTTGTACAAGT | 58.696 | 33.333 | 22.63 | 8.67 | 42.49 | 3.16 |
2912 | 4598 | 9.128107 | CCATTACAAAAGCTATTTGTACAAGTG | 57.872 | 33.333 | 22.63 | 18.94 | 42.49 | 3.16 |
2913 | 4599 | 9.891828 | CATTACAAAAGCTATTTGTACAAGTGA | 57.108 | 29.630 | 22.63 | 13.72 | 42.49 | 3.41 |
2957 | 4652 | 7.732025 | TCTACTTCTGTGTCCAAGTGAAAATA | 58.268 | 34.615 | 0.00 | 0.00 | 34.60 | 1.40 |
3102 | 4817 | 9.811995 | TTATATTCTGTGAGTGTACCATTGTAC | 57.188 | 33.333 | 0.13 | 0.13 | 46.22 | 2.90 |
3196 | 4911 | 0.459489 | AAGAAGAGAGCTGCGCCTAG | 59.541 | 55.000 | 4.18 | 0.00 | 0.00 | 3.02 |
3461 | 5179 | 9.113838 | CTTGAGTATATTACTTTGTTGCTGGAT | 57.886 | 33.333 | 0.00 | 0.00 | 39.59 | 3.41 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
1 | 2 | 3.065925 | GGACAAAGGCTCTACATGAATGC | 59.934 | 47.826 | 0.00 | 0.00 | 0.00 | 3.56 |
2 | 3 | 4.521146 | AGGACAAAGGCTCTACATGAATG | 58.479 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
3 | 4 | 4.851639 | AGGACAAAGGCTCTACATGAAT | 57.148 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
4 | 5 | 5.957771 | ATAGGACAAAGGCTCTACATGAA | 57.042 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
5 | 6 | 6.136857 | ACTATAGGACAAAGGCTCTACATGA | 58.863 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
6 | 7 | 6.412362 | ACTATAGGACAAAGGCTCTACATG | 57.588 | 41.667 | 4.43 | 0.00 | 0.00 | 3.21 |
7 | 8 | 6.841755 | AGAACTATAGGACAAAGGCTCTACAT | 59.158 | 38.462 | 4.43 | 0.00 | 0.00 | 2.29 |
8 | 9 | 6.195700 | AGAACTATAGGACAAAGGCTCTACA | 58.804 | 40.000 | 4.43 | 0.00 | 0.00 | 2.74 |
9 | 10 | 6.718522 | AGAACTATAGGACAAAGGCTCTAC | 57.281 | 41.667 | 4.43 | 0.00 | 0.00 | 2.59 |
10 | 11 | 9.080097 | GATTAGAACTATAGGACAAAGGCTCTA | 57.920 | 37.037 | 4.43 | 0.00 | 0.00 | 2.43 |
11 | 12 | 7.787424 | AGATTAGAACTATAGGACAAAGGCTCT | 59.213 | 37.037 | 4.43 | 0.00 | 0.00 | 4.09 |
12 | 13 | 7.958088 | AGATTAGAACTATAGGACAAAGGCTC | 58.042 | 38.462 | 4.43 | 0.00 | 0.00 | 4.70 |
13 | 14 | 7.922699 | AGATTAGAACTATAGGACAAAGGCT | 57.077 | 36.000 | 4.43 | 0.00 | 0.00 | 4.58 |
14 | 15 | 8.639761 | TGTAGATTAGAACTATAGGACAAAGGC | 58.360 | 37.037 | 4.43 | 0.00 | 0.00 | 4.35 |
19 | 20 | 9.877222 | TGGATTGTAGATTAGAACTATAGGACA | 57.123 | 33.333 | 4.43 | 0.00 | 0.00 | 4.02 |
52 | 53 | 9.974980 | GGAAACATAACCTTGTTTTTCTTATGA | 57.025 | 29.630 | 4.28 | 0.00 | 46.84 | 2.15 |
53 | 54 | 9.757227 | TGGAAACATAACCTTGTTTTTCTTATG | 57.243 | 29.630 | 4.28 | 0.00 | 46.84 | 1.90 |
54 | 55 | 9.758651 | GTGGAAACATAACCTTGTTTTTCTTAT | 57.241 | 29.630 | 4.28 | 0.00 | 46.84 | 1.73 |
55 | 56 | 8.973182 | AGTGGAAACATAACCTTGTTTTTCTTA | 58.027 | 29.630 | 4.28 | 0.00 | 46.84 | 2.10 |
56 | 57 | 7.847096 | AGTGGAAACATAACCTTGTTTTTCTT | 58.153 | 30.769 | 4.28 | 0.00 | 46.84 | 2.52 |
57 | 58 | 7.418337 | AGTGGAAACATAACCTTGTTTTTCT | 57.582 | 32.000 | 4.28 | 2.02 | 46.84 | 2.52 |
58 | 59 | 8.487313 | AAAGTGGAAACATAACCTTGTTTTTC | 57.513 | 30.769 | 4.28 | 2.13 | 46.84 | 2.29 |
59 | 60 | 9.594478 | CTAAAGTGGAAACATAACCTTGTTTTT | 57.406 | 29.630 | 4.28 | 0.00 | 46.84 | 1.94 |
60 | 61 | 8.973182 | TCTAAAGTGGAAACATAACCTTGTTTT | 58.027 | 29.630 | 4.28 | 0.00 | 46.84 | 2.43 |
62 | 63 | 8.528044 | TTCTAAAGTGGAAACATAACCTTGTT | 57.472 | 30.769 | 0.00 | 0.00 | 46.14 | 2.83 |
63 | 64 | 8.528044 | TTTCTAAAGTGGAAACATAACCTTGT | 57.472 | 30.769 | 0.00 | 0.00 | 46.14 | 3.16 |
64 | 65 | 9.981114 | ATTTTCTAAAGTGGAAACATAACCTTG | 57.019 | 29.630 | 0.00 | 0.00 | 46.14 | 3.61 |
66 | 67 | 9.588096 | AGATTTTCTAAAGTGGAAACATAACCT | 57.412 | 29.630 | 0.00 | 0.00 | 46.14 | 3.50 |
67 | 68 | 9.841880 | GAGATTTTCTAAAGTGGAAACATAACC | 57.158 | 33.333 | 0.00 | 0.00 | 46.14 | 2.85 |
68 | 69 | 9.841880 | GGAGATTTTCTAAAGTGGAAACATAAC | 57.158 | 33.333 | 0.00 | 0.00 | 46.14 | 1.89 |
69 | 70 | 9.581289 | TGGAGATTTTCTAAAGTGGAAACATAA | 57.419 | 29.630 | 0.00 | 0.00 | 46.14 | 1.90 |
70 | 71 | 9.581289 | TTGGAGATTTTCTAAAGTGGAAACATA | 57.419 | 29.630 | 0.00 | 0.00 | 46.14 | 2.29 |
71 | 72 | 8.477419 | TTGGAGATTTTCTAAAGTGGAAACAT | 57.523 | 30.769 | 0.00 | 0.00 | 46.14 | 2.71 |
72 | 73 | 7.889873 | TTGGAGATTTTCTAAAGTGGAAACA | 57.110 | 32.000 | 0.00 | 0.00 | 33.22 | 2.83 |
73 | 74 | 8.360390 | ACATTGGAGATTTTCTAAAGTGGAAAC | 58.640 | 33.333 | 0.00 | 0.00 | 33.22 | 2.78 |
74 | 75 | 8.477419 | ACATTGGAGATTTTCTAAAGTGGAAA | 57.523 | 30.769 | 0.00 | 0.00 | 28.78 | 3.13 |
75 | 76 | 9.231297 | CTACATTGGAGATTTTCTAAAGTGGAA | 57.769 | 33.333 | 0.00 | 0.00 | 31.33 | 3.53 |
76 | 77 | 8.602424 | TCTACATTGGAGATTTTCTAAAGTGGA | 58.398 | 33.333 | 0.00 | 0.00 | 34.70 | 4.02 |
77 | 78 | 8.792830 | TCTACATTGGAGATTTTCTAAAGTGG | 57.207 | 34.615 | 0.00 | 0.00 | 31.81 | 4.00 |
86 | 87 | 9.190317 | GGTTTCCTAATCTACATTGGAGATTTT | 57.810 | 33.333 | 25.40 | 9.29 | 40.04 | 1.82 |
87 | 88 | 8.560903 | AGGTTTCCTAATCTACATTGGAGATTT | 58.439 | 33.333 | 25.40 | 12.33 | 40.04 | 2.17 |
88 | 89 | 7.995488 | CAGGTTTCCTAATCTACATTGGAGATT | 59.005 | 37.037 | 24.07 | 24.07 | 44.13 | 2.40 |
89 | 90 | 7.348274 | TCAGGTTTCCTAATCTACATTGGAGAT | 59.652 | 37.037 | 5.50 | 5.50 | 35.08 | 2.75 |
90 | 91 | 6.672218 | TCAGGTTTCCTAATCTACATTGGAGA | 59.328 | 38.462 | 0.00 | 0.00 | 29.64 | 3.71 |
91 | 92 | 6.889198 | TCAGGTTTCCTAATCTACATTGGAG | 58.111 | 40.000 | 0.00 | 0.00 | 29.64 | 3.86 |
92 | 93 | 6.884472 | TCAGGTTTCCTAATCTACATTGGA | 57.116 | 37.500 | 0.00 | 0.00 | 29.64 | 3.53 |
93 | 94 | 7.995488 | AGAATCAGGTTTCCTAATCTACATTGG | 59.005 | 37.037 | 0.00 | 0.00 | 29.64 | 3.16 |
94 | 95 | 8.970859 | AGAATCAGGTTTCCTAATCTACATTG | 57.029 | 34.615 | 0.00 | 0.00 | 29.64 | 2.82 |
97 | 98 | 8.204836 | GCTTAGAATCAGGTTTCCTAATCTACA | 58.795 | 37.037 | 0.00 | 0.00 | 29.64 | 2.74 |
98 | 99 | 8.204836 | TGCTTAGAATCAGGTTTCCTAATCTAC | 58.795 | 37.037 | 0.00 | 0.00 | 29.64 | 2.59 |
99 | 100 | 8.319057 | TGCTTAGAATCAGGTTTCCTAATCTA | 57.681 | 34.615 | 0.00 | 0.00 | 29.64 | 1.98 |
100 | 101 | 7.200434 | TGCTTAGAATCAGGTTTCCTAATCT | 57.800 | 36.000 | 0.00 | 0.00 | 29.64 | 2.40 |
101 | 102 | 6.484977 | CCTGCTTAGAATCAGGTTTCCTAATC | 59.515 | 42.308 | 4.31 | 0.00 | 43.66 | 1.75 |
102 | 103 | 6.360618 | CCTGCTTAGAATCAGGTTTCCTAAT | 58.639 | 40.000 | 4.31 | 0.00 | 43.66 | 1.73 |
103 | 104 | 5.745227 | CCTGCTTAGAATCAGGTTTCCTAA | 58.255 | 41.667 | 4.31 | 0.00 | 43.66 | 2.69 |
104 | 105 | 5.359194 | CCTGCTTAGAATCAGGTTTCCTA | 57.641 | 43.478 | 4.31 | 0.00 | 43.66 | 2.94 |
105 | 106 | 4.227864 | CCTGCTTAGAATCAGGTTTCCT | 57.772 | 45.455 | 4.31 | 0.00 | 43.66 | 3.36 |
112 | 113 | 6.111382 | TCTCAAATGACCTGCTTAGAATCAG | 58.889 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
113 | 114 | 6.053632 | TCTCAAATGACCTGCTTAGAATCA | 57.946 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
114 | 115 | 6.597280 | ACTTCTCAAATGACCTGCTTAGAATC | 59.403 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
115 | 116 | 6.373774 | CACTTCTCAAATGACCTGCTTAGAAT | 59.626 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
116 | 117 | 5.702670 | CACTTCTCAAATGACCTGCTTAGAA | 59.297 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
117 | 118 | 5.240891 | CACTTCTCAAATGACCTGCTTAGA | 58.759 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
118 | 119 | 4.394300 | CCACTTCTCAAATGACCTGCTTAG | 59.606 | 45.833 | 0.00 | 0.00 | 0.00 | 2.18 |
119 | 120 | 4.041567 | TCCACTTCTCAAATGACCTGCTTA | 59.958 | 41.667 | 0.00 | 0.00 | 0.00 | 3.09 |
120 | 121 | 3.152341 | CCACTTCTCAAATGACCTGCTT | 58.848 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
121 | 122 | 2.373169 | TCCACTTCTCAAATGACCTGCT | 59.627 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
122 | 123 | 2.485814 | GTCCACTTCTCAAATGACCTGC | 59.514 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
123 | 124 | 3.499918 | GTGTCCACTTCTCAAATGACCTG | 59.500 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
124 | 125 | 3.392616 | AGTGTCCACTTCTCAAATGACCT | 59.607 | 43.478 | 0.00 | 0.00 | 38.83 | 3.85 |
125 | 126 | 3.499918 | CAGTGTCCACTTCTCAAATGACC | 59.500 | 47.826 | 0.00 | 0.00 | 40.20 | 4.02 |
126 | 127 | 4.380531 | TCAGTGTCCACTTCTCAAATGAC | 58.619 | 43.478 | 0.00 | 0.00 | 40.20 | 3.06 |
127 | 128 | 4.687901 | TCAGTGTCCACTTCTCAAATGA | 57.312 | 40.909 | 0.00 | 0.00 | 40.20 | 2.57 |
128 | 129 | 6.427853 | TGTTATCAGTGTCCACTTCTCAAATG | 59.572 | 38.462 | 0.00 | 0.00 | 40.20 | 2.32 |
129 | 130 | 6.533730 | TGTTATCAGTGTCCACTTCTCAAAT | 58.466 | 36.000 | 0.00 | 0.00 | 40.20 | 2.32 |
130 | 131 | 5.924356 | TGTTATCAGTGTCCACTTCTCAAA | 58.076 | 37.500 | 0.00 | 0.00 | 40.20 | 2.69 |
131 | 132 | 5.545063 | TGTTATCAGTGTCCACTTCTCAA | 57.455 | 39.130 | 0.00 | 0.00 | 40.20 | 3.02 |
132 | 133 | 5.245977 | TGATGTTATCAGTGTCCACTTCTCA | 59.754 | 40.000 | 0.00 | 0.00 | 40.20 | 3.27 |
133 | 134 | 5.724328 | TGATGTTATCAGTGTCCACTTCTC | 58.276 | 41.667 | 0.00 | 0.00 | 40.20 | 2.87 |
134 | 135 | 5.745312 | TGATGTTATCAGTGTCCACTTCT | 57.255 | 39.130 | 0.00 | 0.00 | 40.20 | 2.85 |
135 | 136 | 5.877012 | ACATGATGTTATCAGTGTCCACTTC | 59.123 | 40.000 | 0.00 | 0.00 | 43.53 | 3.01 |
136 | 137 | 5.809001 | ACATGATGTTATCAGTGTCCACTT | 58.191 | 37.500 | 0.00 | 0.00 | 43.53 | 3.16 |
137 | 138 | 5.046376 | TGACATGATGTTATCAGTGTCCACT | 60.046 | 40.000 | 19.56 | 0.00 | 43.53 | 4.00 |
138 | 139 | 5.178061 | TGACATGATGTTATCAGTGTCCAC | 58.822 | 41.667 | 19.56 | 0.00 | 43.53 | 4.02 |
139 | 140 | 5.419239 | TGACATGATGTTATCAGTGTCCA | 57.581 | 39.130 | 19.56 | 11.92 | 43.53 | 4.02 |
140 | 141 | 5.277683 | GCATGACATGATGTTATCAGTGTCC | 60.278 | 44.000 | 19.76 | 9.77 | 43.53 | 4.02 |
141 | 142 | 5.526479 | AGCATGACATGATGTTATCAGTGTC | 59.474 | 40.000 | 19.76 | 17.62 | 43.53 | 3.67 |
142 | 143 | 5.434408 | AGCATGACATGATGTTATCAGTGT | 58.566 | 37.500 | 19.76 | 0.00 | 43.53 | 3.55 |
143 | 144 | 6.373186 | AAGCATGACATGATGTTATCAGTG | 57.627 | 37.500 | 19.76 | 0.00 | 43.53 | 3.66 |
144 | 145 | 7.503549 | TCTAAGCATGACATGATGTTATCAGT | 58.496 | 34.615 | 19.76 | 0.00 | 43.53 | 3.41 |
145 | 146 | 7.958053 | TCTAAGCATGACATGATGTTATCAG | 57.042 | 36.000 | 19.76 | 4.84 | 43.53 | 2.90 |
146 | 147 | 8.913487 | ATTCTAAGCATGACATGATGTTATCA | 57.087 | 30.769 | 19.76 | 0.00 | 44.55 | 2.15 |
147 | 148 | 8.996271 | TGATTCTAAGCATGACATGATGTTATC | 58.004 | 33.333 | 19.76 | 13.41 | 0.00 | 1.75 |
148 | 149 | 8.913487 | TGATTCTAAGCATGACATGATGTTAT | 57.087 | 30.769 | 19.76 | 0.00 | 0.00 | 1.89 |
149 | 150 | 8.735692 | TTGATTCTAAGCATGACATGATGTTA | 57.264 | 30.769 | 19.76 | 11.25 | 0.00 | 2.41 |
150 | 151 | 7.634671 | TTGATTCTAAGCATGACATGATGTT | 57.365 | 32.000 | 19.76 | 10.73 | 0.00 | 2.71 |
151 | 152 | 7.260558 | CTTGATTCTAAGCATGACATGATGT | 57.739 | 36.000 | 19.76 | 0.00 | 0.00 | 3.06 |
164 | 165 | 5.508200 | ACTCCTACGAGCTTGATTCTAAG | 57.492 | 43.478 | 8.31 | 0.10 | 40.03 | 2.18 |
165 | 166 | 6.120905 | AGTACTCCTACGAGCTTGATTCTAA | 58.879 | 40.000 | 8.31 | 0.00 | 40.03 | 2.10 |
166 | 167 | 5.682659 | AGTACTCCTACGAGCTTGATTCTA | 58.317 | 41.667 | 8.31 | 0.00 | 40.03 | 2.10 |
167 | 168 | 4.528920 | AGTACTCCTACGAGCTTGATTCT | 58.471 | 43.478 | 8.31 | 0.00 | 40.03 | 2.40 |
168 | 169 | 4.904253 | AGTACTCCTACGAGCTTGATTC | 57.096 | 45.455 | 8.31 | 0.00 | 40.03 | 2.52 |
169 | 170 | 6.062749 | TGATAGTACTCCTACGAGCTTGATT | 58.937 | 40.000 | 8.31 | 0.00 | 40.03 | 2.57 |
170 | 171 | 5.622180 | TGATAGTACTCCTACGAGCTTGAT | 58.378 | 41.667 | 8.31 | 0.00 | 40.03 | 2.57 |
171 | 172 | 5.032327 | TGATAGTACTCCTACGAGCTTGA | 57.968 | 43.478 | 8.31 | 0.00 | 40.03 | 3.02 |
172 | 173 | 5.752892 | TTGATAGTACTCCTACGAGCTTG | 57.247 | 43.478 | 0.00 | 0.00 | 40.03 | 4.01 |
173 | 174 | 6.300703 | AGATTGATAGTACTCCTACGAGCTT | 58.699 | 40.000 | 0.00 | 0.00 | 40.03 | 3.74 |
174 | 175 | 5.871834 | AGATTGATAGTACTCCTACGAGCT | 58.128 | 41.667 | 0.00 | 0.00 | 40.03 | 4.09 |
175 | 176 | 6.563222 | AAGATTGATAGTACTCCTACGAGC | 57.437 | 41.667 | 0.00 | 0.00 | 40.03 | 5.03 |
176 | 177 | 7.598118 | TCGTAAGATTGATAGTACTCCTACGAG | 59.402 | 40.741 | 0.00 | 0.00 | 45.01 | 4.18 |
177 | 178 | 7.436933 | TCGTAAGATTGATAGTACTCCTACGA | 58.563 | 38.462 | 0.00 | 3.09 | 45.01 | 3.43 |
178 | 179 | 7.649370 | TCGTAAGATTGATAGTACTCCTACG | 57.351 | 40.000 | 0.00 | 0.57 | 45.01 | 3.51 |
195 | 196 | 8.255206 | TGGTATAGAAGCAATTTTCTCGTAAGA | 58.745 | 33.333 | 0.00 | 0.00 | 38.35 | 2.10 |
196 | 197 | 8.420374 | TGGTATAGAAGCAATTTTCTCGTAAG | 57.580 | 34.615 | 0.00 | 0.00 | 38.35 | 2.34 |
200 | 201 | 6.420903 | TCGATGGTATAGAAGCAATTTTCTCG | 59.579 | 38.462 | 0.00 | 0.00 | 39.48 | 4.04 |
328 | 329 | 7.054124 | TGACAAGAAAACAGAGACTTGGTAAT | 58.946 | 34.615 | 0.00 | 0.00 | 42.39 | 1.89 |
433 | 443 | 1.299926 | GTGCGTTGAGTCGTGGTCT | 60.300 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
798 | 1219 | 3.358076 | CTCTCCACCTCGCCGGAAC | 62.358 | 68.421 | 5.05 | 0.00 | 36.31 | 3.62 |
832 | 1253 | 2.792947 | GGGAAGAGCATCGGCCGTA | 61.793 | 63.158 | 27.15 | 12.70 | 42.67 | 4.02 |
960 | 1383 | 6.540914 | CCCGAGAAATTACCTAGCACAAATAA | 59.459 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
1128 | 1688 | 6.252995 | ACCCTCAATAATCTGCCAACTAAAA | 58.747 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
1327 | 1902 | 2.762327 | AGTTGATGATCAAATGGCCACC | 59.238 | 45.455 | 8.16 | 0.00 | 38.22 | 4.61 |
1537 | 2112 | 1.623811 | ACTATCGGAACCAACACTGCT | 59.376 | 47.619 | 0.00 | 0.00 | 0.00 | 4.24 |
2091 | 3772 | 7.946207 | TGAAACACTCAGCCAAATTATTTGTA | 58.054 | 30.769 | 15.40 | 0.00 | 38.98 | 2.41 |
2106 | 3787 | 3.882888 | GGATCCAGTTGTTGAAACACTCA | 59.117 | 43.478 | 6.95 | 0.00 | 38.92 | 3.41 |
2317 | 3999 | 2.799412 | CACTCTCACTCACTTCTGCAAC | 59.201 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2863 | 4547 | 5.831525 | GGGTTTCTTCTTTCTTTTGTCCCTA | 59.168 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2881 | 4565 | 9.135843 | GTACAAATAGCTTTTGTAATGGGTTTC | 57.864 | 33.333 | 23.62 | 12.69 | 43.77 | 2.78 |
2957 | 4652 | 5.611374 | TGAAAGTAGAGCTAGTGCAGTTTT | 58.389 | 37.500 | 0.00 | 0.00 | 42.74 | 2.43 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.