Multiple sequence alignment - TraesCS3B01G278800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G278800 chr3B 100.000 3068 0 0 1 3068 448769812 448772879 0.000000e+00 5666.0
1 TraesCS3B01G278800 chr3B 91.337 531 34 6 1 521 448729214 448729742 0.000000e+00 715.0
2 TraesCS3B01G278800 chr3D 92.742 3100 148 25 1 3068 349852612 349855666 0.000000e+00 4407.0
3 TraesCS3B01G278800 chr3A 90.966 2092 124 29 1007 3068 468000144 468002200 0.000000e+00 2756.0
4 TraesCS3B01G278800 chr3A 92.702 644 37 4 369 1011 467924401 467925035 0.000000e+00 920.0
5 TraesCS3B01G278800 chr4D 78.788 264 42 11 2525 2778 476867040 476867299 6.810000e-37 165.0
6 TraesCS3B01G278800 chr4A 77.528 267 46 11 2522 2778 683607635 683607897 6.850000e-32 148.0
7 TraesCS3B01G278800 chr4B 80.612 196 30 5 2589 2778 600918808 600919001 8.870000e-31 145.0
8 TraesCS3B01G278800 chr4B 92.157 51 3 1 2012 2061 18794519 18794569 1.530000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G278800 chr3B 448769812 448772879 3067 False 5666 5666 100.000 1 3068 1 chr3B.!!$F2 3067
1 TraesCS3B01G278800 chr3B 448729214 448729742 528 False 715 715 91.337 1 521 1 chr3B.!!$F1 520
2 TraesCS3B01G278800 chr3D 349852612 349855666 3054 False 4407 4407 92.742 1 3068 1 chr3D.!!$F1 3067
3 TraesCS3B01G278800 chr3A 468000144 468002200 2056 False 2756 2756 90.966 1007 3068 1 chr3A.!!$F2 2061
4 TraesCS3B01G278800 chr3A 467924401 467925035 634 False 920 920 92.702 369 1011 1 chr3A.!!$F1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
749 762 0.318445 CTGTGTCTGCAAAAGCTGGC 60.318 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2314 2334 0.322546 AAGGTGTGCGGGGAAGAATC 60.323 55.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.423161 TCACCACATCCAATCACCACA 59.577 47.619 0.00 0.00 0.00 4.17
71 72 1.522355 CGCAGATCGCACCAGGATT 60.522 57.895 0.00 0.00 42.60 3.01
192 202 3.446570 GCAGCAGCAAGGCCGATT 61.447 61.111 0.00 0.00 41.58 3.34
193 203 2.998279 GCAGCAGCAAGGCCGATTT 61.998 57.895 0.00 0.00 41.58 2.17
210 220 2.757980 TTTGTAGAGGGTTGGCGGCC 62.758 60.000 13.32 13.32 0.00 6.13
230 240 2.084596 GGGTAGGTTTTCAGCCCCT 58.915 57.895 0.00 0.00 33.40 4.79
231 241 0.408309 GGGTAGGTTTTCAGCCCCTT 59.592 55.000 0.00 0.00 33.40 3.95
286 296 3.223423 ACGCTCTGACATCAAGTACAG 57.777 47.619 0.00 0.00 0.00 2.74
315 325 7.888021 ACTGGAACCATCAATTTCTGTATGTAA 59.112 33.333 0.00 0.00 0.00 2.41
318 328 7.702348 GGAACCATCAATTTCTGTATGTAAAGC 59.298 37.037 0.00 0.00 0.00 3.51
335 345 2.279582 AGCGACCAAAGTGACTATCG 57.720 50.000 4.69 4.69 0.00 2.92
613 626 2.076863 CGCCCTCTCTGTTTTCGAAAT 58.923 47.619 12.12 0.00 0.00 2.17
703 716 3.532155 AGCGTCCTCCGGCATCTC 61.532 66.667 0.00 0.00 36.94 2.75
749 762 0.318445 CTGTGTCTGCAAAAGCTGGC 60.318 55.000 0.00 0.00 0.00 4.85
753 766 2.732094 CTGCAAAAGCTGGCGTGC 60.732 61.111 10.41 10.41 37.51 5.34
793 806 2.194212 GCTGCGGACGGATCTCCTA 61.194 63.158 0.00 0.00 0.00 2.94
926 939 5.151454 TGGACACCAAATTTGAGGGTTATT 58.849 37.500 19.86 0.00 31.03 1.40
952 966 5.522460 GCATATTATGGATCATTGCAATGGC 59.478 40.000 33.22 25.42 37.03 4.40
1111 1126 1.817447 ACGAGGTACTTCTTCTTCCCG 59.183 52.381 3.27 0.00 41.55 5.14
1175 1190 1.743252 CAGAGTGGCCGCCTTCTTC 60.743 63.158 14.07 3.18 0.00 2.87
1186 1201 4.053295 GCCGCCTTCTTCGTATACAATAA 58.947 43.478 3.32 0.00 0.00 1.40
1190 1205 5.117287 CGCCTTCTTCGTATACAATAAGAGC 59.883 44.000 3.32 8.20 30.19 4.09
1266 1281 3.145551 GCAGGGGCCATTGCTGAG 61.146 66.667 20.96 0.00 37.35 3.35
1397 1412 5.409214 CCCCTTAAGCAAACAATGACATTTG 59.591 40.000 0.00 0.00 38.57 2.32
1416 1431 9.662545 GACATTTGTTATTGGGTTTTGATTTTG 57.337 29.630 0.00 0.00 0.00 2.44
1425 1440 4.582240 TGGGTTTTGATTTTGCCCATTTTC 59.418 37.500 0.00 0.00 43.75 2.29
1728 1744 5.291971 GCAATGTTTTCTTGGTTGTCTCAT 58.708 37.500 0.00 0.00 0.00 2.90
1877 1893 4.756642 GGATGAATGTGACTTTGTGTCTGA 59.243 41.667 0.00 0.00 45.54 3.27
2094 2110 2.275380 CCCAGGGGTTTGCTTTCGG 61.275 63.158 0.00 0.00 0.00 4.30
2244 2262 4.383118 CCACCTATTTAGGATATGGCTCCG 60.383 50.000 10.61 0.00 46.63 4.63
2284 2304 1.200020 CAGGATTCTGGACAAAACGCC 59.800 52.381 0.00 0.00 37.36 5.68
2291 2311 0.881159 TGGACAAAACGCCGTCGATT 60.881 50.000 0.00 0.00 39.41 3.34
2314 2334 0.979709 TGGGATCACTCTGGCAGAGG 60.980 60.000 39.26 29.39 46.45 3.69
2331 2351 1.749258 GGATTCTTCCCCGCACACC 60.749 63.158 0.00 0.00 35.84 4.16
2338 2358 1.388065 TTCCCCGCACACCTTGTTTG 61.388 55.000 0.00 0.00 0.00 2.93
2387 2407 9.935241 CCTCTGCATACTCTGTTTATATACATT 57.065 33.333 0.00 0.00 0.00 2.71
2423 2443 0.036577 AGCACAAGGAGCTGCAGTAG 60.037 55.000 16.64 1.86 41.61 2.57
2442 2462 7.981142 GCAGTAGCAACTTGGTAATACAAATA 58.019 34.615 2.24 0.00 41.58 1.40
2476 2496 4.575885 AGGAGTTAGCAAAATTACGAGCA 58.424 39.130 0.00 0.00 0.00 4.26
2483 2503 7.333423 AGTTAGCAAAATTACGAGCATACTTGA 59.667 33.333 0.00 0.00 0.00 3.02
2500 2520 7.653311 GCATACTTGACATTTTTCTGAAAACCT 59.347 33.333 14.70 3.56 37.56 3.50
2504 2524 8.720562 ACTTGACATTTTTCTGAAAACCTTTTG 58.279 29.630 14.70 10.03 37.56 2.44
2539 2562 1.406751 GGTTGCTTGGGCTGTTTTGTT 60.407 47.619 0.00 0.00 39.59 2.83
2542 2565 1.136695 TGCTTGGGCTGTTTTGTTCTG 59.863 47.619 0.00 0.00 39.59 3.02
2568 2591 7.277760 GGGAACAATCACATTATTTTAAGTGGC 59.722 37.037 0.00 0.00 33.01 5.01
2570 2593 6.329496 ACAATCACATTATTTTAAGTGGCCG 58.671 36.000 0.00 0.00 33.01 6.13
2708 2734 6.878923 TCCTACAATATCAAGTGTTTGACCAG 59.121 38.462 0.00 0.00 45.54 4.00
2720 2746 3.058293 TGTTTGACCAGCTCGCTTTTATG 60.058 43.478 0.00 0.00 0.00 1.90
2722 2748 1.277842 TGACCAGCTCGCTTTTATGGA 59.722 47.619 1.71 0.00 34.99 3.41
2723 2749 1.666189 GACCAGCTCGCTTTTATGGAC 59.334 52.381 1.71 0.00 34.99 4.02
2794 2820 7.120432 GGAGCTCATGTTCTCTCTTAAAATTGT 59.880 37.037 17.19 0.00 0.00 2.71
2863 2891 1.335810 ACAAACTGTGTGCATGCTCAG 59.664 47.619 22.00 23.71 39.72 3.35
2889 2936 4.638865 GTGGTGTCTTAAACAGGTGTCTTT 59.361 41.667 0.00 0.00 38.97 2.52
2890 2937 5.124936 GTGGTGTCTTAAACAGGTGTCTTTT 59.875 40.000 0.00 0.00 38.97 2.27
2892 2939 6.885376 TGGTGTCTTAAACAGGTGTCTTTTTA 59.115 34.615 0.00 0.00 38.97 1.52
2893 2940 7.393796 TGGTGTCTTAAACAGGTGTCTTTTTAA 59.606 33.333 0.00 0.00 38.97 1.52
2894 2941 7.699391 GGTGTCTTAAACAGGTGTCTTTTTAAC 59.301 37.037 0.00 0.00 38.97 2.01
2908 2955 8.615585 GTGTCTTTTTAACGTTCATGTAAATCG 58.384 33.333 2.82 0.00 0.00 3.34
2937 2984 7.655328 CAGGATACCATTCTCAATAGTGACTTC 59.345 40.741 0.00 0.00 37.17 3.01
2938 2985 7.566879 AGGATACCATTCTCAATAGTGACTTCT 59.433 37.037 0.00 0.00 37.17 2.85
2939 2986 7.655328 GGATACCATTCTCAATAGTGACTTCTG 59.345 40.741 0.00 0.00 0.00 3.02
2940 2987 6.611613 ACCATTCTCAATAGTGACTTCTGA 57.388 37.500 0.00 0.00 0.00 3.27
2941 2988 7.009179 ACCATTCTCAATAGTGACTTCTGAA 57.991 36.000 0.00 0.00 0.00 3.02
2942 2989 6.876257 ACCATTCTCAATAGTGACTTCTGAAC 59.124 38.462 0.00 0.00 0.00 3.18
2943 2990 6.875726 CCATTCTCAATAGTGACTTCTGAACA 59.124 38.462 0.00 0.00 0.00 3.18
2944 2991 7.388776 CCATTCTCAATAGTGACTTCTGAACAA 59.611 37.037 0.00 0.00 0.00 2.83
2945 2992 8.944029 CATTCTCAATAGTGACTTCTGAACAAT 58.056 33.333 0.00 0.00 0.00 2.71
2946 2993 8.539770 TTCTCAATAGTGACTTCTGAACAATC 57.460 34.615 0.00 0.00 0.00 2.67
2947 2994 7.901029 TCTCAATAGTGACTTCTGAACAATCT 58.099 34.615 0.00 0.00 0.00 2.40
2948 2995 9.025041 TCTCAATAGTGACTTCTGAACAATCTA 57.975 33.333 0.00 0.00 0.00 1.98
2949 2996 9.299963 CTCAATAGTGACTTCTGAACAATCTAG 57.700 37.037 0.00 0.00 0.00 2.43
2950 2997 8.807118 TCAATAGTGACTTCTGAACAATCTAGT 58.193 33.333 0.00 0.00 0.00 2.57
2951 2998 8.867935 CAATAGTGACTTCTGAACAATCTAGTG 58.132 37.037 0.00 0.00 0.00 2.74
2952 2999 6.656632 AGTGACTTCTGAACAATCTAGTGA 57.343 37.500 0.00 0.00 0.00 3.41
2953 3000 6.451393 AGTGACTTCTGAACAATCTAGTGAC 58.549 40.000 0.00 0.00 0.00 3.67
2954 3001 6.266558 AGTGACTTCTGAACAATCTAGTGACT 59.733 38.462 0.00 0.00 29.44 3.41
2955 3002 6.926272 GTGACTTCTGAACAATCTAGTGACTT 59.074 38.462 0.00 0.00 0.00 3.01
2956 3003 7.115663 GTGACTTCTGAACAATCTAGTGACTTC 59.884 40.741 0.00 0.00 0.00 3.01
2977 3024 6.429385 ACTTCTCAAGTTCCTGAACAATCATC 59.571 38.462 12.21 0.00 43.47 2.92
2997 3044 1.474077 CTTGTGCTGTATTTGGGGAGC 59.526 52.381 0.00 0.00 0.00 4.70
3036 3083 3.713858 TTGTGATGCTGAAACACAAGG 57.286 42.857 7.33 0.00 45.35 3.61
3037 3084 1.955778 TGTGATGCTGAAACACAAGGG 59.044 47.619 0.00 0.00 40.72 3.95
3057 3104 1.260544 GGGGCATGGATTCTTATGGC 58.739 55.000 14.87 14.87 45.83 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.665000 CGTGGCCATGAGACTGGT 59.335 61.111 21.08 0.00 38.63 4.00
71 72 2.492025 AGATTAGGAAGATGGGTGGCA 58.508 47.619 0.00 0.00 0.00 4.92
114 122 1.382629 CAAAGGGACGGGGGTCATT 59.617 57.895 0.00 0.00 0.00 2.57
192 202 2.349755 GCCGCCAACCCTCTACAA 59.650 61.111 0.00 0.00 0.00 2.41
193 203 3.712907 GGCCGCCAACCCTCTACA 61.713 66.667 3.91 0.00 0.00 2.74
210 220 1.378119 GGGCTGAAAACCTACCCCG 60.378 63.158 0.00 0.00 34.23 5.73
214 224 1.545841 CCAAGGGGCTGAAAACCTAC 58.454 55.000 0.00 0.00 33.37 3.18
230 240 4.659172 CCCTCTTGTGGCGGCCAA 62.659 66.667 25.70 8.45 34.18 4.52
242 252 0.544357 TTCCACCATGTCGTCCCTCT 60.544 55.000 0.00 0.00 0.00 3.69
286 296 6.575162 ACAGAAATTGATGGTTCCAGTAAC 57.425 37.500 0.00 0.00 37.36 2.50
315 325 2.607187 CGATAGTCACTTTGGTCGCTT 58.393 47.619 0.00 0.00 0.00 4.68
436 449 3.664107 GTTAGGATCTCCGCATGCATAA 58.336 45.455 19.57 0.63 42.08 1.90
437 450 2.352715 CGTTAGGATCTCCGCATGCATA 60.353 50.000 19.57 3.41 42.08 3.14
496 509 4.452455 AGGTTTTGCAATCGACTCTAGTTG 59.548 41.667 0.00 0.00 0.00 3.16
793 806 2.203509 CCGGAGAGGGATAGCGGT 60.204 66.667 0.00 0.00 35.97 5.68
952 966 3.077484 TGATCCCAAAGCAAGAGAAGG 57.923 47.619 0.00 0.00 0.00 3.46
1111 1126 1.202818 ACCCAGCTTGTGAGGAACTTC 60.203 52.381 0.00 0.00 41.55 3.01
1190 1205 3.008375 TGTCCATGTCCTTGAAGAGAAGG 59.992 47.826 0.00 0.00 43.61 3.46
1266 1281 1.342819 CTAGCCCTAGGTGAGTGCATC 59.657 57.143 8.29 0.00 0.00 3.91
1397 1412 5.621197 GGGCAAAATCAAAACCCAATAAC 57.379 39.130 0.00 0.00 40.52 1.89
1416 1431 4.218417 TGAGTTTCAGCTTAGAAAATGGGC 59.782 41.667 4.44 0.00 39.05 5.36
1425 1440 4.116747 AGGACGATGAGTTTCAGCTTAG 57.883 45.455 0.00 0.00 29.10 2.18
1728 1744 2.147958 CACGGACCGGAATTTTCTTCA 58.852 47.619 20.00 0.00 0.00 3.02
1800 1816 6.718912 TGTTGAAGTCCCATTCACATTTATCA 59.281 34.615 0.00 0.00 38.87 2.15
2094 2110 6.978343 TGTAAGTTACAAGTCATATGGCAC 57.022 37.500 13.36 0.00 35.38 5.01
2218 2236 5.671941 AGCCATATCCTAAATAGGTGGGTA 58.328 41.667 14.34 3.24 42.53 3.69
2219 2237 4.513292 AGCCATATCCTAAATAGGTGGGT 58.487 43.478 11.51 11.51 44.02 4.51
2222 2240 4.223032 ACGGAGCCATATCCTAAATAGGTG 59.777 45.833 6.39 0.00 44.02 4.00
2223 2241 4.426704 ACGGAGCCATATCCTAAATAGGT 58.573 43.478 6.39 0.00 44.02 3.08
2225 2243 5.794894 ACAACGGAGCCATATCCTAAATAG 58.205 41.667 0.00 0.00 37.20 1.73
2244 2262 1.100510 GCGGGGAAGGGATTAACAAC 58.899 55.000 0.00 0.00 0.00 3.32
2282 2302 0.667792 GATCCCAGCTAATCGACGGC 60.668 60.000 0.00 0.00 0.00 5.68
2284 2304 1.338337 AGTGATCCCAGCTAATCGACG 59.662 52.381 0.00 0.00 0.00 5.12
2291 2311 0.325577 TGCCAGAGTGATCCCAGCTA 60.326 55.000 0.00 0.00 0.00 3.32
2314 2334 0.322546 AAGGTGTGCGGGGAAGAATC 60.323 55.000 0.00 0.00 0.00 2.52
2331 2351 0.673437 AACCGGATGCACCAAACAAG 59.327 50.000 9.46 0.00 38.90 3.16
2387 2407 9.679661 TCCTTGTGCTTTCATATATAAAAGTCA 57.320 29.630 9.62 5.99 35.41 3.41
2395 2415 4.518211 GCAGCTCCTTGTGCTTTCATATAT 59.482 41.667 0.00 0.00 38.92 0.86
2430 2450 8.921670 CCTTGCACAAAGTTTATTTGTATTACC 58.078 33.333 5.72 0.00 40.30 2.85
2442 2462 3.699038 TGCTAACTCCTTGCACAAAGTTT 59.301 39.130 10.91 0.00 34.09 2.66
2483 2503 6.374053 CCACCAAAAGGTTTTCAGAAAAATGT 59.626 34.615 10.00 0.00 36.77 2.71
2500 2520 1.102154 CTGTGACTGTGCCACCAAAA 58.898 50.000 0.00 0.00 33.80 2.44
2504 2524 1.152963 AACCTGTGACTGTGCCACC 60.153 57.895 0.00 0.00 33.80 4.61
2510 2530 0.466189 CCCAAGCAACCTGTGACTGT 60.466 55.000 0.00 0.00 0.00 3.55
2513 2533 1.529244 AGCCCAAGCAACCTGTGAC 60.529 57.895 0.00 0.00 43.56 3.67
2539 2562 9.308000 ACTTAAAATAATGTGATTGTTCCCAGA 57.692 29.630 0.00 0.00 0.00 3.86
2542 2565 7.277760 GCCACTTAAAATAATGTGATTGTTCCC 59.722 37.037 0.00 0.00 32.72 3.97
2618 2644 6.881065 AGCTGAGAAGTATTGTGCAGAAAATA 59.119 34.615 0.00 0.00 0.00 1.40
2625 2651 6.172630 TGATAAAGCTGAGAAGTATTGTGCA 58.827 36.000 0.00 0.00 0.00 4.57
2708 2734 3.003480 ACTTCAGTCCATAAAAGCGAGC 58.997 45.455 0.00 0.00 0.00 5.03
2720 2746 3.556004 CCTCTCCTTGTCAACTTCAGTCC 60.556 52.174 0.00 0.00 0.00 3.85
2722 2748 3.041946 ACCTCTCCTTGTCAACTTCAGT 58.958 45.455 0.00 0.00 0.00 3.41
2723 2749 3.760580 ACCTCTCCTTGTCAACTTCAG 57.239 47.619 0.00 0.00 0.00 3.02
2794 2820 7.618019 AATGGTATCAGAATAGCAAGGAGTA 57.382 36.000 1.89 0.00 46.01 2.59
2850 2878 1.209383 CACAGCTGAGCATGCACAC 59.791 57.895 23.35 13.96 0.00 3.82
2863 2891 2.290641 CACCTGTTTAAGACACCACAGC 59.709 50.000 0.00 0.00 36.16 4.40
2889 2936 4.454847 TGCCCGATTTACATGAACGTTAAA 59.545 37.500 0.00 0.00 0.00 1.52
2890 2937 4.001652 TGCCCGATTTACATGAACGTTAA 58.998 39.130 0.00 0.00 0.00 2.01
2892 2939 2.418628 CTGCCCGATTTACATGAACGTT 59.581 45.455 0.00 0.00 0.00 3.99
2893 2940 2.006888 CTGCCCGATTTACATGAACGT 58.993 47.619 0.00 0.00 0.00 3.99
2894 2941 1.330521 CCTGCCCGATTTACATGAACG 59.669 52.381 0.00 0.00 0.00 3.95
2908 2955 3.515602 ATTGAGAATGGTATCCTGCCC 57.484 47.619 0.00 0.00 0.00 5.36
2937 2984 7.151308 ACTTGAGAAGTCACTAGATTGTTCAG 58.849 38.462 0.00 0.00 37.02 3.02
2938 2985 7.055667 ACTTGAGAAGTCACTAGATTGTTCA 57.944 36.000 0.00 0.00 37.02 3.18
2939 2986 7.117092 GGAACTTGAGAAGTCACTAGATTGTTC 59.883 40.741 0.00 0.00 41.91 3.18
2940 2987 6.931840 GGAACTTGAGAAGTCACTAGATTGTT 59.068 38.462 0.00 0.00 41.91 2.83
2941 2988 6.268847 AGGAACTTGAGAAGTCACTAGATTGT 59.731 38.462 0.00 0.00 41.91 2.71
2942 2989 6.589523 CAGGAACTTGAGAAGTCACTAGATTG 59.410 42.308 0.00 0.00 41.91 2.67
2943 2990 6.495181 TCAGGAACTTGAGAAGTCACTAGATT 59.505 38.462 0.00 0.00 41.91 2.40
2944 2991 6.013379 TCAGGAACTTGAGAAGTCACTAGAT 58.987 40.000 0.00 0.00 41.91 1.98
2945 2992 5.386060 TCAGGAACTTGAGAAGTCACTAGA 58.614 41.667 0.00 0.00 41.91 2.43
2946 2993 5.713792 TCAGGAACTTGAGAAGTCACTAG 57.286 43.478 0.00 0.00 41.91 2.57
2947 2994 5.362717 TGTTCAGGAACTTGAGAAGTCACTA 59.637 40.000 12.86 0.00 41.91 2.74
2948 2995 4.162320 TGTTCAGGAACTTGAGAAGTCACT 59.838 41.667 12.86 0.00 41.91 3.41
2949 2996 4.442706 TGTTCAGGAACTTGAGAAGTCAC 58.557 43.478 12.86 0.00 41.91 3.67
2950 2997 4.753516 TGTTCAGGAACTTGAGAAGTCA 57.246 40.909 12.86 0.00 41.91 3.41
2951 2998 5.760253 TGATTGTTCAGGAACTTGAGAAGTC 59.240 40.000 12.86 0.08 41.91 3.01
2952 2999 5.684704 TGATTGTTCAGGAACTTGAGAAGT 58.315 37.500 12.86 0.00 45.46 3.01
2953 3000 6.654161 AGATGATTGTTCAGGAACTTGAGAAG 59.346 38.462 12.86 0.00 41.67 2.85
2954 3001 6.537355 AGATGATTGTTCAGGAACTTGAGAA 58.463 36.000 12.86 0.00 41.67 2.87
2955 3002 6.119240 AGATGATTGTTCAGGAACTTGAGA 57.881 37.500 12.86 0.00 41.67 3.27
2956 3003 6.206243 ACAAGATGATTGTTCAGGAACTTGAG 59.794 38.462 12.86 0.00 41.67 3.02
2977 3024 1.474077 GCTCCCCAAATACAGCACAAG 59.526 52.381 0.00 0.00 0.00 3.16
2997 3044 6.033341 TCACAAATCTCAACAAAAGTTTCCG 58.967 36.000 0.00 0.00 0.00 4.30
3037 3084 1.928868 CCATAAGAATCCATGCCCCC 58.071 55.000 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.