Multiple sequence alignment - TraesCS3B01G278400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G278400 chr3B 100.000 4487 0 0 1 4487 448580349 448575863 0.000000e+00 8287.0
1 TraesCS3B01G278400 chr3B 74.715 965 202 32 2430 3376 641804498 641805438 4.210000e-105 392.0
2 TraesCS3B01G278400 chr3D 89.981 2625 139 50 1510 4076 349643803 349641245 0.000000e+00 3277.0
3 TraesCS3B01G278400 chr3D 82.751 887 76 37 376 1226 349644768 349643923 0.000000e+00 719.0
4 TraesCS3B01G278400 chr3D 90.634 331 29 2 4 333 349645173 349644844 5.330000e-119 438.0
5 TraesCS3B01G278400 chr3D 74.587 968 198 38 2430 3376 480969241 480970181 9.110000e-102 381.0
6 TraesCS3B01G278400 chr3D 85.424 295 38 3 4 295 587537352 587537060 7.290000e-78 302.0
7 TraesCS3B01G278400 chr3A 91.734 2226 109 37 1501 3685 467879319 467877128 0.000000e+00 3022.0
8 TraesCS3B01G278400 chr3A 85.558 824 55 21 377 1151 467880302 467879494 0.000000e+00 804.0
9 TraesCS3B01G278400 chr3A 91.400 407 23 3 4092 4487 467875390 467874985 8.490000e-152 547.0
10 TraesCS3B01G278400 chr3A 74.767 967 198 35 2430 3376 623776831 623777771 4.210000e-105 392.0
11 TraesCS3B01G278400 chr3A 93.458 214 12 2 3866 4078 467876925 467876713 2.610000e-82 316.0
12 TraesCS3B01G278400 chr2A 86.061 990 133 4 2422 3410 507388953 507389938 0.000000e+00 1059.0
13 TraesCS3B01G278400 chr2A 81.089 349 57 7 1 343 673026112 673026457 2.060000e-68 270.0
14 TraesCS3B01G278400 chr2B 85.541 989 140 2 2422 3410 445176461 445177446 0.000000e+00 1031.0
15 TraesCS3B01G278400 chr2D 85.440 989 141 2 2422 3410 375032186 375033171 0.000000e+00 1026.0
16 TraesCS3B01G278400 chr2D 85.185 297 41 2 1 294 619468143 619468439 7.290000e-78 302.0
17 TraesCS3B01G278400 chr6A 94.146 615 32 4 3749 4362 106502517 106501906 0.000000e+00 933.0
18 TraesCS3B01G278400 chr6A 100.000 29 0 0 4324 4352 106502583 106502611 2.000000e-03 54.7
19 TraesCS3B01G278400 chr7B 84.918 305 41 4 1 302 334303064 334302762 2.030000e-78 303.0
20 TraesCS3B01G278400 chr7B 81.988 322 54 2 1 319 657604051 657604371 2.060000e-68 270.0
21 TraesCS3B01G278400 chr6B 84.642 293 40 4 1 289 632431895 632431604 2.040000e-73 287.0
22 TraesCS3B01G278400 chr1D 84.028 288 42 2 4 288 139138326 139138612 1.590000e-69 274.0
23 TraesCS3B01G278400 chr4D 80.466 343 63 2 4 343 309623284 309622943 4.450000e-65 259.0
24 TraesCS3B01G278400 chr5D 79.167 144 22 7 3248 3387 465698872 465699011 4.780000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G278400 chr3B 448575863 448580349 4486 True 8287.00 8287 100.000000 1 4487 1 chr3B.!!$R1 4486
1 TraesCS3B01G278400 chr3B 641804498 641805438 940 False 392.00 392 74.715000 2430 3376 1 chr3B.!!$F1 946
2 TraesCS3B01G278400 chr3D 349641245 349645173 3928 True 1478.00 3277 87.788667 4 4076 3 chr3D.!!$R2 4072
3 TraesCS3B01G278400 chr3D 480969241 480970181 940 False 381.00 381 74.587000 2430 3376 1 chr3D.!!$F1 946
4 TraesCS3B01G278400 chr3A 467874985 467880302 5317 True 1172.25 3022 90.537500 377 4487 4 chr3A.!!$R1 4110
5 TraesCS3B01G278400 chr3A 623776831 623777771 940 False 392.00 392 74.767000 2430 3376 1 chr3A.!!$F1 946
6 TraesCS3B01G278400 chr2A 507388953 507389938 985 False 1059.00 1059 86.061000 2422 3410 1 chr2A.!!$F1 988
7 TraesCS3B01G278400 chr2B 445176461 445177446 985 False 1031.00 1031 85.541000 2422 3410 1 chr2B.!!$F1 988
8 TraesCS3B01G278400 chr2D 375032186 375033171 985 False 1026.00 1026 85.440000 2422 3410 1 chr2D.!!$F1 988
9 TraesCS3B01G278400 chr6A 106501906 106502517 611 True 933.00 933 94.146000 3749 4362 1 chr6A.!!$R1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 1051 0.041833 CTCTTCTCCCTGGTCCTGGA 59.958 60.0 16.24 8.31 0.00 3.86 F
1398 1492 0.034337 TTTTCTCCCCGTGTTCGAGG 59.966 55.0 0.00 0.00 39.71 4.63 F
1404 1498 0.250166 CCCCGTGTTCGAGGTTTCTT 60.250 55.0 0.00 0.00 39.71 2.52 F
2416 2591 0.036105 AGAGCATGTGATTGTGGCGA 60.036 50.0 0.00 0.00 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 1970 0.183492 AAGCACAGCTCAGGACCAAA 59.817 50.000 0.00 0.00 38.25 3.28 R
2333 2503 0.590195 ACGGTGATCGGTACTATCGC 59.410 55.000 11.53 11.53 44.45 4.58 R
2610 2785 1.003355 CACCGTGGAGCTGACCATT 60.003 57.895 0.00 0.00 42.17 3.16 R
3605 3789 0.107831 CCTTCACCCTTCACCGTCAA 59.892 55.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.879026 GGAAAGAATATGCTTCCGGGAC 59.121 50.000 0.00 0.00 0.00 4.46
73 74 1.803334 TGGGAAAGACAAACGGATCG 58.197 50.000 0.00 0.00 0.00 3.69
75 76 1.609841 GGGAAAGACAAACGGATCGGT 60.610 52.381 0.00 0.00 0.00 4.69
81 82 3.428282 AAACGGATCGGTTGCGGC 61.428 61.111 18.20 0.00 44.44 6.53
117 118 1.820519 GTAGTGTATCCGTGTGGTGGA 59.179 52.381 0.00 0.00 40.46 4.02
123 124 2.124507 ATCCGTGTGGTGGAAGTGGG 62.125 60.000 0.00 0.00 39.39 4.61
126 127 2.369015 TGTGGTGGAAGTGGGGGT 60.369 61.111 0.00 0.00 0.00 4.95
130 131 3.246880 GTGGAAGTGGGGGTCCGT 61.247 66.667 0.00 0.00 36.65 4.69
157 158 3.061161 CCGTACGTGCACATAGTTTTACC 59.939 47.826 18.64 0.00 0.00 2.85
198 199 6.210078 TGTCCAAAATGTAACCGTTTTCATC 58.790 36.000 0.00 0.00 37.62 2.92
224 225 7.593644 CCGATTTGTATGAACTACGTCATGATA 59.406 37.037 0.00 0.00 38.69 2.15
232 233 7.946655 TGAACTACGTCATGATATGAAATCC 57.053 36.000 0.00 0.00 41.69 3.01
247 248 0.247185 AATCCGGGCTTGTTTGCATG 59.753 50.000 0.00 0.00 34.04 4.06
254 255 3.401182 GGGCTTGTTTGCATGAATTTCA 58.599 40.909 0.75 0.75 34.04 2.69
269 270 7.518052 GCATGAATTTCATTCGGTTTGTTGAAA 60.518 33.333 9.19 0.00 42.15 2.69
278 279 8.333908 TCATTCGGTTTGTTGAAAATGAATTTG 58.666 29.630 0.00 0.00 32.02 2.32
284 285 9.786105 GGTTTGTTGAAAATGAATTTGAAATGT 57.214 25.926 0.00 0.00 0.00 2.71
297 298 5.574891 TTTGAAATGTATGCGGCTACAAT 57.425 34.783 13.54 5.69 35.37 2.71
300 301 4.637977 TGAAATGTATGCGGCTACAATTGA 59.362 37.500 13.59 6.56 35.37 2.57
308 309 0.170339 GGCTACAATTGAACGGTGGC 59.830 55.000 13.59 2.47 38.17 5.01
309 310 0.170339 GCTACAATTGAACGGTGGCC 59.830 55.000 13.59 0.00 33.53 5.36
314 315 0.178975 AATTGAACGGTGGCCTTCCA 60.179 50.000 3.32 0.00 40.85 3.53
333 334 1.929169 CACATCAGTGTATGCGGAGTG 59.071 52.381 0.00 0.00 40.92 3.51
334 335 1.134699 ACATCAGTGTATGCGGAGTGG 60.135 52.381 0.00 0.00 36.63 4.00
335 336 1.134699 CATCAGTGTATGCGGAGTGGT 60.135 52.381 0.00 0.00 0.00 4.16
337 338 0.460284 CAGTGTATGCGGAGTGGTCC 60.460 60.000 0.00 0.00 39.88 4.46
338 339 0.614979 AGTGTATGCGGAGTGGTCCT 60.615 55.000 0.00 0.00 41.34 3.85
339 340 0.179108 GTGTATGCGGAGTGGTCCTC 60.179 60.000 0.00 0.00 41.34 3.71
340 341 0.324368 TGTATGCGGAGTGGTCCTCT 60.324 55.000 0.00 0.00 41.34 3.69
342 343 0.324368 TATGCGGAGTGGTCCTCTGT 60.324 55.000 0.00 0.00 46.65 3.41
343 344 1.892819 ATGCGGAGTGGTCCTCTGTG 61.893 60.000 0.00 0.00 46.65 3.66
344 345 2.973899 CGGAGTGGTCCTCTGTGG 59.026 66.667 0.00 0.00 41.04 4.17
345 346 2.650116 CGGAGTGGTCCTCTGTGGG 61.650 68.421 0.00 0.00 41.04 4.61
361 366 4.010349 CTGTGGGAGGAAATTTACAGGTC 58.990 47.826 2.58 0.00 33.69 3.85
363 368 2.640826 TGGGAGGAAATTTACAGGTCGT 59.359 45.455 2.58 0.00 0.00 4.34
365 370 4.286549 TGGGAGGAAATTTACAGGTCGTTA 59.713 41.667 2.58 0.00 0.00 3.18
366 371 4.874396 GGGAGGAAATTTACAGGTCGTTAG 59.126 45.833 2.58 0.00 0.00 2.34
367 372 5.337813 GGGAGGAAATTTACAGGTCGTTAGA 60.338 44.000 2.58 0.00 0.00 2.10
368 373 5.811100 GGAGGAAATTTACAGGTCGTTAGAG 59.189 44.000 2.58 0.00 0.00 2.43
369 374 6.350780 GGAGGAAATTTACAGGTCGTTAGAGA 60.351 42.308 2.58 0.00 0.00 3.10
371 376 7.042335 AGGAAATTTACAGGTCGTTAGAGATG 58.958 38.462 2.58 0.00 0.00 2.90
372 377 6.238130 GGAAATTTACAGGTCGTTAGAGATGC 60.238 42.308 0.00 0.00 0.00 3.91
373 378 3.795623 TTACAGGTCGTTAGAGATGCC 57.204 47.619 0.00 0.00 0.00 4.40
374 379 0.824759 ACAGGTCGTTAGAGATGCCC 59.175 55.000 0.00 0.00 0.00 5.36
391 425 1.597854 CCCGCTCAGTTGCTCACAA 60.598 57.895 0.00 0.00 0.00 3.33
489 523 1.136565 CAAATAAGCGCACGGGGTG 59.863 57.895 11.47 0.00 36.51 4.61
521 555 0.243095 GGGACAGACAGTACGTGACC 59.757 60.000 0.00 0.00 0.00 4.02
549 583 2.750350 CTTCCACCGTGCTTCCCT 59.250 61.111 0.00 0.00 0.00 4.20
563 597 2.587322 TTCCCTCCGGCAGCATAACG 62.587 60.000 0.00 0.00 0.00 3.18
640 674 3.736482 GACGACGCGGAGGTAGCAG 62.736 68.421 12.47 0.00 34.19 4.24
641 675 3.812019 CGACGCGGAGGTAGCAGT 61.812 66.667 12.47 0.00 34.19 4.40
642 676 2.466982 CGACGCGGAGGTAGCAGTA 61.467 63.158 12.47 0.00 34.19 2.74
643 677 1.355916 GACGCGGAGGTAGCAGTAG 59.644 63.158 12.47 0.00 34.19 2.57
644 678 2.026301 CGCGGAGGTAGCAGTAGC 59.974 66.667 0.00 0.00 42.56 3.58
726 766 2.912025 CAAGCCACACCACCACCC 60.912 66.667 0.00 0.00 0.00 4.61
739 779 1.142748 CCACCCGCTAGCTTCTCAG 59.857 63.158 13.93 0.00 0.00 3.35
761 807 3.123620 GCAGCAGAGCAACCGAGG 61.124 66.667 0.00 0.00 0.00 4.63
768 814 3.394836 AGCAACCGAGGCTCCCTC 61.395 66.667 9.32 1.10 46.44 4.30
788 837 0.663153 CCGCTGCTTAAATAGGCCAC 59.337 55.000 5.01 0.00 0.00 5.01
793 842 2.866762 CTGCTTAAATAGGCCACTCGTC 59.133 50.000 5.01 0.00 0.00 4.20
796 845 3.877508 GCTTAAATAGGCCACTCGTCAAT 59.122 43.478 5.01 0.00 0.00 2.57
810 859 0.535335 GTCAATCCTACGCCAGTCCA 59.465 55.000 0.00 0.00 0.00 4.02
811 860 1.139058 GTCAATCCTACGCCAGTCCAT 59.861 52.381 0.00 0.00 0.00 3.41
812 861 1.837439 TCAATCCTACGCCAGTCCATT 59.163 47.619 0.00 0.00 0.00 3.16
813 862 2.158957 TCAATCCTACGCCAGTCCATTC 60.159 50.000 0.00 0.00 0.00 2.67
814 863 0.389391 ATCCTACGCCAGTCCATTCG 59.611 55.000 0.00 0.00 0.00 3.34
893 950 2.271800 GACGGTGAAGCATAAGGTCAG 58.728 52.381 0.00 0.00 0.00 3.51
906 963 2.670934 GTCAGCACACCTGGCCAG 60.671 66.667 26.87 26.87 40.35 4.85
970 1027 1.846712 GCTTGGCTCTTCTCCCTGGT 61.847 60.000 0.00 0.00 0.00 4.00
973 1041 1.306568 GGCTCTTCTCCCTGGTCCT 60.307 63.158 0.00 0.00 0.00 3.85
976 1051 0.041833 CTCTTCTCCCTGGTCCTGGA 59.958 60.000 16.24 8.31 0.00 3.86
1008 1083 3.460672 GATCGGAAGGATGGCGGCA 62.461 63.158 16.34 16.34 34.82 5.69
1067 1148 3.382832 CGCCGGAGTTCTCCTGGT 61.383 66.667 5.05 0.00 0.00 4.00
1102 1183 0.951040 CACAGGTGAGTTCCTTCCGC 60.951 60.000 0.00 0.00 35.37 5.54
1104 1185 1.841556 AGGTGAGTTCCTTCCGCCA 60.842 57.895 0.00 0.00 33.52 5.69
1105 1186 1.201429 AGGTGAGTTCCTTCCGCCAT 61.201 55.000 0.00 0.00 33.52 4.40
1106 1187 0.322546 GGTGAGTTCCTTCCGCCATT 60.323 55.000 0.00 0.00 0.00 3.16
1107 1188 1.087501 GTGAGTTCCTTCCGCCATTC 58.912 55.000 0.00 0.00 0.00 2.67
1119 1200 1.216178 GCCATTCTGCGTGCCAAAT 59.784 52.632 0.00 0.00 0.00 2.32
1121 1202 0.527113 CCATTCTGCGTGCCAAATCA 59.473 50.000 0.00 0.00 0.00 2.57
1122 1203 1.135527 CCATTCTGCGTGCCAAATCAT 59.864 47.619 0.00 0.00 0.00 2.45
1123 1204 2.190161 CATTCTGCGTGCCAAATCATG 58.810 47.619 0.00 0.00 0.00 3.07
1124 1205 1.246649 TTCTGCGTGCCAAATCATGT 58.753 45.000 0.00 0.00 0.00 3.21
1134 1215 6.147821 GCGTGCCAAATCATGTAGTATAATCT 59.852 38.462 0.00 0.00 0.00 2.40
1135 1216 7.307989 GCGTGCCAAATCATGTAGTATAATCTT 60.308 37.037 0.00 0.00 0.00 2.40
1156 1237 1.654220 CTCTAGAGAGCTCCTGCGC 59.346 63.158 15.05 0.00 45.42 6.09
1157 1238 2.116736 CTCTAGAGAGCTCCTGCGCG 62.117 65.000 15.05 0.00 43.79 6.86
1158 1239 2.438614 TAGAGAGCTCCTGCGCGT 60.439 61.111 10.93 0.00 43.79 6.01
1159 1240 2.387125 CTAGAGAGCTCCTGCGCGTC 62.387 65.000 10.93 0.00 43.79 5.19
1172 1253 4.374702 GCGTCGTGCCAACTGCTG 62.375 66.667 0.00 0.00 42.00 4.41
1175 1256 1.771073 CGTCGTGCCAACTGCTGAAA 61.771 55.000 0.00 0.00 42.00 2.69
1176 1257 0.593128 GTCGTGCCAACTGCTGAAAT 59.407 50.000 0.00 0.00 42.00 2.17
1177 1258 1.804151 GTCGTGCCAACTGCTGAAATA 59.196 47.619 0.00 0.00 42.00 1.40
1178 1259 2.076100 TCGTGCCAACTGCTGAAATAG 58.924 47.619 0.00 0.00 42.00 1.73
1199 1291 1.294659 GCCTCCGTGCTCTGTTCTTG 61.295 60.000 0.00 0.00 0.00 3.02
1204 1296 1.939934 CCGTGCTCTGTTCTTGTCAAA 59.060 47.619 0.00 0.00 0.00 2.69
1206 1298 3.548587 CGTGCTCTGTTCTTGTCAAATG 58.451 45.455 0.00 0.00 0.00 2.32
1223 1315 2.910688 ATGTATCGTCGGCCATCTTT 57.089 45.000 2.24 0.00 0.00 2.52
1226 1318 1.003866 GTATCGTCGGCCATCTTTTGC 60.004 52.381 2.24 0.00 0.00 3.68
1227 1319 0.392998 ATCGTCGGCCATCTTTTGCT 60.393 50.000 2.24 0.00 0.00 3.91
1228 1320 1.019278 TCGTCGGCCATCTTTTGCTC 61.019 55.000 2.24 0.00 0.00 4.26
1229 1321 1.425428 GTCGGCCATCTTTTGCTCG 59.575 57.895 2.24 0.00 0.00 5.03
1230 1322 1.019278 GTCGGCCATCTTTTGCTCGA 61.019 55.000 2.24 0.00 0.00 4.04
1231 1323 0.107703 TCGGCCATCTTTTGCTCGAT 60.108 50.000 2.24 0.00 0.00 3.59
1232 1324 0.305922 CGGCCATCTTTTGCTCGATC 59.694 55.000 2.24 0.00 0.00 3.69
1233 1325 0.665298 GGCCATCTTTTGCTCGATCC 59.335 55.000 0.00 0.00 0.00 3.36
1234 1326 1.673168 GCCATCTTTTGCTCGATCCT 58.327 50.000 0.00 0.00 0.00 3.24
1235 1327 2.019984 GCCATCTTTTGCTCGATCCTT 58.980 47.619 0.00 0.00 0.00 3.36
1236 1328 2.032675 GCCATCTTTTGCTCGATCCTTC 59.967 50.000 0.00 0.00 0.00 3.46
1237 1329 3.539604 CCATCTTTTGCTCGATCCTTCT 58.460 45.455 0.00 0.00 0.00 2.85
1238 1330 3.311871 CCATCTTTTGCTCGATCCTTCTG 59.688 47.826 0.00 0.00 0.00 3.02
1239 1331 3.961480 TCTTTTGCTCGATCCTTCTGA 57.039 42.857 0.00 0.00 0.00 3.27
1240 1332 3.854666 TCTTTTGCTCGATCCTTCTGAG 58.145 45.455 0.00 0.00 0.00 3.35
1241 1333 3.259374 TCTTTTGCTCGATCCTTCTGAGT 59.741 43.478 0.00 0.00 32.32 3.41
1242 1334 3.685139 TTTGCTCGATCCTTCTGAGTT 57.315 42.857 0.00 0.00 32.32 3.01
1243 1335 2.662006 TGCTCGATCCTTCTGAGTTG 57.338 50.000 0.00 0.00 32.32 3.16
1244 1336 1.285578 GCTCGATCCTTCTGAGTTGC 58.714 55.000 0.00 0.00 32.32 4.17
1245 1337 1.554392 CTCGATCCTTCTGAGTTGCG 58.446 55.000 0.00 0.00 0.00 4.85
1246 1338 0.458543 TCGATCCTTCTGAGTTGCGC 60.459 55.000 0.00 0.00 0.00 6.09
1247 1339 1.746727 CGATCCTTCTGAGTTGCGCG 61.747 60.000 0.00 0.00 0.00 6.86
1248 1340 0.737715 GATCCTTCTGAGTTGCGCGT 60.738 55.000 8.43 0.00 0.00 6.01
1249 1341 0.737715 ATCCTTCTGAGTTGCGCGTC 60.738 55.000 8.43 0.00 0.00 5.19
1250 1342 2.383527 CCTTCTGAGTTGCGCGTCC 61.384 63.158 8.43 0.00 0.00 4.79
1251 1343 1.664649 CTTCTGAGTTGCGCGTCCA 60.665 57.895 8.43 0.00 0.00 4.02
1252 1344 1.005037 TTCTGAGTTGCGCGTCCAT 60.005 52.632 8.43 0.00 0.00 3.41
1253 1345 0.602638 TTCTGAGTTGCGCGTCCATT 60.603 50.000 8.43 0.00 0.00 3.16
1254 1346 0.602638 TCTGAGTTGCGCGTCCATTT 60.603 50.000 8.43 0.00 0.00 2.32
1255 1347 0.238289 CTGAGTTGCGCGTCCATTTT 59.762 50.000 8.43 0.00 0.00 1.82
1256 1348 1.463056 CTGAGTTGCGCGTCCATTTTA 59.537 47.619 8.43 0.00 0.00 1.52
1257 1349 2.080693 TGAGTTGCGCGTCCATTTTAT 58.919 42.857 8.43 0.00 0.00 1.40
1258 1350 3.263261 TGAGTTGCGCGTCCATTTTATA 58.737 40.909 8.43 0.00 0.00 0.98
1259 1351 3.874543 TGAGTTGCGCGTCCATTTTATAT 59.125 39.130 8.43 0.00 0.00 0.86
1260 1352 4.025229 TGAGTTGCGCGTCCATTTTATATC 60.025 41.667 8.43 0.00 0.00 1.63
1261 1353 4.127171 AGTTGCGCGTCCATTTTATATCT 58.873 39.130 8.43 0.00 0.00 1.98
1262 1354 5.294356 AGTTGCGCGTCCATTTTATATCTA 58.706 37.500 8.43 0.00 0.00 1.98
1263 1355 5.405571 AGTTGCGCGTCCATTTTATATCTAG 59.594 40.000 8.43 0.00 0.00 2.43
1264 1356 4.242475 TGCGCGTCCATTTTATATCTAGG 58.758 43.478 8.43 0.00 0.00 3.02
1265 1357 4.243270 GCGCGTCCATTTTATATCTAGGT 58.757 43.478 8.43 0.00 0.00 3.08
1266 1358 4.091509 GCGCGTCCATTTTATATCTAGGTG 59.908 45.833 8.43 0.00 0.00 4.00
1267 1359 5.466819 CGCGTCCATTTTATATCTAGGTGA 58.533 41.667 0.00 0.00 0.00 4.02
1268 1360 5.573282 CGCGTCCATTTTATATCTAGGTGAG 59.427 44.000 0.00 0.00 0.00 3.51
1269 1361 5.348997 GCGTCCATTTTATATCTAGGTGAGC 59.651 44.000 0.00 0.00 0.00 4.26
1270 1362 6.692486 CGTCCATTTTATATCTAGGTGAGCT 58.308 40.000 0.00 0.00 0.00 4.09
1271 1363 6.809196 CGTCCATTTTATATCTAGGTGAGCTC 59.191 42.308 6.82 6.82 0.00 4.09
1272 1364 7.309499 CGTCCATTTTATATCTAGGTGAGCTCT 60.309 40.741 16.19 0.00 0.00 4.09
1273 1365 9.026121 GTCCATTTTATATCTAGGTGAGCTCTA 57.974 37.037 16.19 0.00 0.00 2.43
1274 1366 9.601810 TCCATTTTATATCTAGGTGAGCTCTAA 57.398 33.333 16.19 0.00 0.00 2.10
1275 1367 9.646427 CCATTTTATATCTAGGTGAGCTCTAAC 57.354 37.037 16.19 5.39 0.00 2.34
1278 1370 8.410673 TTTATATCTAGGTGAGCTCTAACTGG 57.589 38.462 16.19 11.22 0.00 4.00
1279 1371 3.741245 TCTAGGTGAGCTCTAACTGGT 57.259 47.619 16.19 0.00 0.00 4.00
1280 1372 3.622630 TCTAGGTGAGCTCTAACTGGTC 58.377 50.000 16.19 0.00 0.00 4.02
1281 1373 1.178276 AGGTGAGCTCTAACTGGTCG 58.822 55.000 16.19 0.00 34.99 4.79
1282 1374 0.889306 GGTGAGCTCTAACTGGTCGT 59.111 55.000 16.19 0.00 34.99 4.34
1283 1375 1.402984 GGTGAGCTCTAACTGGTCGTG 60.403 57.143 16.19 0.00 34.99 4.35
1284 1376 1.540267 GTGAGCTCTAACTGGTCGTGA 59.460 52.381 16.19 0.00 34.99 4.35
1285 1377 2.164624 GTGAGCTCTAACTGGTCGTGAT 59.835 50.000 16.19 0.00 34.99 3.06
1286 1378 2.826128 TGAGCTCTAACTGGTCGTGATT 59.174 45.455 16.19 0.00 34.99 2.57
1287 1379 3.182967 GAGCTCTAACTGGTCGTGATTG 58.817 50.000 6.43 0.00 0.00 2.67
1288 1380 2.563179 AGCTCTAACTGGTCGTGATTGT 59.437 45.455 0.00 0.00 0.00 2.71
1289 1381 2.668457 GCTCTAACTGGTCGTGATTGTG 59.332 50.000 0.00 0.00 0.00 3.33
1290 1382 3.861131 GCTCTAACTGGTCGTGATTGTGT 60.861 47.826 0.00 0.00 0.00 3.72
1291 1383 4.307432 CTCTAACTGGTCGTGATTGTGTT 58.693 43.478 0.00 0.00 0.00 3.32
1292 1384 5.456548 TCTAACTGGTCGTGATTGTGTTA 57.543 39.130 0.00 0.00 0.00 2.41
1293 1385 5.466819 TCTAACTGGTCGTGATTGTGTTAG 58.533 41.667 0.00 0.00 37.67 2.34
1294 1386 3.040147 ACTGGTCGTGATTGTGTTAGG 57.960 47.619 0.00 0.00 0.00 2.69
1295 1387 1.732259 CTGGTCGTGATTGTGTTAGGC 59.268 52.381 0.00 0.00 0.00 3.93
1296 1388 1.070914 TGGTCGTGATTGTGTTAGGCA 59.929 47.619 0.00 0.00 0.00 4.75
1297 1389 2.290008 TGGTCGTGATTGTGTTAGGCAT 60.290 45.455 0.00 0.00 0.00 4.40
1298 1390 2.747446 GGTCGTGATTGTGTTAGGCATT 59.253 45.455 0.00 0.00 0.00 3.56
1299 1391 3.936453 GGTCGTGATTGTGTTAGGCATTA 59.064 43.478 0.00 0.00 0.00 1.90
1300 1392 4.034048 GGTCGTGATTGTGTTAGGCATTAG 59.966 45.833 0.00 0.00 0.00 1.73
1301 1393 4.034048 GTCGTGATTGTGTTAGGCATTAGG 59.966 45.833 0.00 0.00 0.00 2.69
1302 1394 3.242739 CGTGATTGTGTTAGGCATTAGGC 60.243 47.826 0.00 0.00 43.74 3.93
1315 1407 4.270245 GCATTAGGCAATCTAGAGCTCT 57.730 45.455 22.17 22.17 43.97 4.09
1316 1408 5.398603 GCATTAGGCAATCTAGAGCTCTA 57.601 43.478 22.01 22.01 43.97 2.43
1317 1409 5.788450 GCATTAGGCAATCTAGAGCTCTAA 58.212 41.667 23.37 14.75 43.97 2.10
1318 1410 5.637387 GCATTAGGCAATCTAGAGCTCTAAC 59.363 44.000 23.37 10.88 43.97 2.34
1319 1411 6.518200 GCATTAGGCAATCTAGAGCTCTAACT 60.518 42.308 23.37 15.68 43.97 2.24
1320 1412 4.935352 AGGCAATCTAGAGCTCTAACTG 57.065 45.455 23.37 19.43 0.00 3.16
1321 1413 3.069443 AGGCAATCTAGAGCTCTAACTGC 59.931 47.826 27.62 27.62 31.71 4.40
1322 1414 3.049206 GCAATCTAGAGCTCTAACTGCG 58.951 50.000 23.37 12.07 35.28 5.18
1323 1415 3.243234 GCAATCTAGAGCTCTAACTGCGA 60.243 47.826 23.37 16.70 35.28 5.10
1324 1416 4.536065 CAATCTAGAGCTCTAACTGCGAG 58.464 47.826 23.37 12.41 35.28 5.03
1328 1420 3.681789 GCTCTAACTGCGAGCGAC 58.318 61.111 0.00 0.00 43.69 5.19
1329 1421 1.874466 GCTCTAACTGCGAGCGACC 60.874 63.158 0.00 0.00 43.69 4.79
1330 1422 1.226717 CTCTAACTGCGAGCGACCC 60.227 63.158 0.00 0.00 0.00 4.46
1331 1423 1.934220 CTCTAACTGCGAGCGACCCA 61.934 60.000 0.00 0.00 0.00 4.51
1332 1424 1.141881 CTAACTGCGAGCGACCCAT 59.858 57.895 0.00 0.00 0.00 4.00
1333 1425 0.460284 CTAACTGCGAGCGACCCATT 60.460 55.000 0.00 0.00 0.00 3.16
1334 1426 0.036765 TAACTGCGAGCGACCCATTT 60.037 50.000 0.00 0.00 0.00 2.32
1335 1427 1.298859 AACTGCGAGCGACCCATTTC 61.299 55.000 0.00 0.00 0.00 2.17
1336 1428 2.802667 CTGCGAGCGACCCATTTCG 61.803 63.158 0.00 0.00 42.15 3.46
1337 1429 2.813908 GCGAGCGACCCATTTCGT 60.814 61.111 0.00 0.00 41.26 3.85
1338 1430 2.388232 GCGAGCGACCCATTTCGTT 61.388 57.895 0.00 0.00 41.26 3.85
1339 1431 1.708027 CGAGCGACCCATTTCGTTC 59.292 57.895 0.00 0.00 43.48 3.95
1340 1432 1.693083 CGAGCGACCCATTTCGTTCC 61.693 60.000 4.17 0.00 43.88 3.62
1341 1433 0.391263 GAGCGACCCATTTCGTTCCT 60.391 55.000 0.00 0.00 41.75 3.36
1342 1434 0.673644 AGCGACCCATTTCGTTCCTG 60.674 55.000 0.00 0.00 41.26 3.86
1343 1435 1.644786 GCGACCCATTTCGTTCCTGG 61.645 60.000 0.00 0.00 41.26 4.45
1344 1436 1.644786 CGACCCATTTCGTTCCTGGC 61.645 60.000 0.00 0.00 34.16 4.85
1345 1437 0.322546 GACCCATTTCGTTCCTGGCT 60.323 55.000 0.00 0.00 0.00 4.75
1346 1438 0.112412 ACCCATTTCGTTCCTGGCTT 59.888 50.000 0.00 0.00 0.00 4.35
1347 1439 0.811281 CCCATTTCGTTCCTGGCTTC 59.189 55.000 0.00 0.00 0.00 3.86
1348 1440 0.447801 CCATTTCGTTCCTGGCTTCG 59.552 55.000 0.00 0.00 0.00 3.79
1349 1441 1.156736 CATTTCGTTCCTGGCTTCGT 58.843 50.000 0.00 0.00 0.00 3.85
1350 1442 1.128692 CATTTCGTTCCTGGCTTCGTC 59.871 52.381 0.00 0.00 0.00 4.20
1351 1443 0.105224 TTTCGTTCCTGGCTTCGTCA 59.895 50.000 0.00 0.00 0.00 4.35
1352 1444 0.320374 TTCGTTCCTGGCTTCGTCAT 59.680 50.000 0.00 0.00 0.00 3.06
1353 1445 0.320374 TCGTTCCTGGCTTCGTCATT 59.680 50.000 0.00 0.00 0.00 2.57
1354 1446 0.443869 CGTTCCTGGCTTCGTCATTG 59.556 55.000 0.00 0.00 0.00 2.82
1355 1447 0.169009 GTTCCTGGCTTCGTCATTGC 59.831 55.000 0.00 0.00 0.00 3.56
1356 1448 0.036732 TTCCTGGCTTCGTCATTGCT 59.963 50.000 0.00 0.00 0.00 3.91
1357 1449 0.674581 TCCTGGCTTCGTCATTGCTG 60.675 55.000 0.00 0.00 0.00 4.41
1358 1450 0.674581 CCTGGCTTCGTCATTGCTGA 60.675 55.000 0.00 0.00 0.00 4.26
1359 1451 1.376543 CTGGCTTCGTCATTGCTGAT 58.623 50.000 0.00 0.00 32.98 2.90
1360 1452 1.741706 CTGGCTTCGTCATTGCTGATT 59.258 47.619 0.00 0.00 32.98 2.57
1361 1453 1.469703 TGGCTTCGTCATTGCTGATTG 59.530 47.619 0.00 0.00 32.98 2.67
1362 1454 1.542544 GCTTCGTCATTGCTGATTGC 58.457 50.000 0.00 0.00 43.25 3.56
1363 1455 1.806511 CTTCGTCATTGCTGATTGCG 58.193 50.000 0.00 0.00 46.63 4.85
1369 1461 1.132834 TCATTGCTGATTGCGCGATTT 59.867 42.857 12.10 0.00 46.63 2.17
1370 1462 1.921887 CATTGCTGATTGCGCGATTTT 59.078 42.857 12.10 0.00 46.63 1.82
1371 1463 1.338765 TTGCTGATTGCGCGATTTTG 58.661 45.000 12.10 6.36 46.63 2.44
1381 1475 4.300189 TGCGCGATTTTGCCTATATTTT 57.700 36.364 12.10 0.00 0.00 1.82
1383 1477 4.737765 TGCGCGATTTTGCCTATATTTTTC 59.262 37.500 12.10 0.00 0.00 2.29
1385 1479 5.115622 GCGCGATTTTGCCTATATTTTTCTC 59.884 40.000 12.10 0.00 0.00 2.87
1389 1483 5.845391 TTTTGCCTATATTTTTCTCCCCG 57.155 39.130 0.00 0.00 0.00 5.73
1390 1484 4.513406 TTGCCTATATTTTTCTCCCCGT 57.487 40.909 0.00 0.00 0.00 5.28
1391 1485 3.815809 TGCCTATATTTTTCTCCCCGTG 58.184 45.455 0.00 0.00 0.00 4.94
1392 1486 3.201266 TGCCTATATTTTTCTCCCCGTGT 59.799 43.478 0.00 0.00 0.00 4.49
1393 1487 4.204799 GCCTATATTTTTCTCCCCGTGTT 58.795 43.478 0.00 0.00 0.00 3.32
1394 1488 4.275196 GCCTATATTTTTCTCCCCGTGTTC 59.725 45.833 0.00 0.00 0.00 3.18
1395 1489 4.510340 CCTATATTTTTCTCCCCGTGTTCG 59.490 45.833 0.00 0.00 0.00 3.95
1396 1490 2.554370 ATTTTTCTCCCCGTGTTCGA 57.446 45.000 0.00 0.00 39.71 3.71
1397 1491 1.873698 TTTTTCTCCCCGTGTTCGAG 58.126 50.000 0.00 0.00 39.71 4.04
1398 1492 0.034337 TTTTCTCCCCGTGTTCGAGG 59.966 55.000 0.00 0.00 39.71 4.63
1399 1493 1.117142 TTTCTCCCCGTGTTCGAGGT 61.117 55.000 0.00 0.00 36.35 3.85
1400 1494 1.117142 TTCTCCCCGTGTTCGAGGTT 61.117 55.000 0.00 0.00 36.35 3.50
1401 1495 1.117142 TCTCCCCGTGTTCGAGGTTT 61.117 55.000 0.00 0.00 36.35 3.27
1402 1496 0.669625 CTCCCCGTGTTCGAGGTTTC 60.670 60.000 0.00 0.00 36.35 2.78
1403 1497 1.117142 TCCCCGTGTTCGAGGTTTCT 61.117 55.000 0.00 0.00 36.35 2.52
1404 1498 0.250166 CCCCGTGTTCGAGGTTTCTT 60.250 55.000 0.00 0.00 39.71 2.52
1405 1499 1.589803 CCCGTGTTCGAGGTTTCTTT 58.410 50.000 0.00 0.00 39.71 2.52
1407 1501 2.032290 CCCGTGTTCGAGGTTTCTTTTC 60.032 50.000 0.00 0.00 39.71 2.29
1408 1502 2.610374 CCGTGTTCGAGGTTTCTTTTCA 59.390 45.455 0.00 0.00 39.71 2.69
1409 1503 3.064271 CCGTGTTCGAGGTTTCTTTTCAA 59.936 43.478 0.00 0.00 39.71 2.69
1411 1505 5.270853 CGTGTTCGAGGTTTCTTTTCAAAT 58.729 37.500 0.00 0.00 39.71 2.32
1413 1507 6.252655 CGTGTTCGAGGTTTCTTTTCAAATTT 59.747 34.615 0.00 0.00 39.71 1.82
1414 1508 7.391016 GTGTTCGAGGTTTCTTTTCAAATTTG 58.609 34.615 12.15 12.15 0.00 2.32
1415 1509 6.035542 TGTTCGAGGTTTCTTTTCAAATTTGC 59.964 34.615 13.54 0.00 0.00 3.68
1417 1511 5.748152 TCGAGGTTTCTTTTCAAATTTGCAG 59.252 36.000 13.54 9.01 0.00 4.41
1418 1512 5.050837 CGAGGTTTCTTTTCAAATTTGCAGG 60.051 40.000 13.54 3.46 0.00 4.85
1421 1515 6.883756 AGGTTTCTTTTCAAATTTGCAGGAAA 59.116 30.769 13.54 15.53 0.00 3.13
1422 1516 7.557358 AGGTTTCTTTTCAAATTTGCAGGAAAT 59.443 29.630 20.44 10.35 35.65 2.17
1427 1521 9.612066 TCTTTTCAAATTTGCAGGAAATAAACT 57.388 25.926 13.54 0.00 32.76 2.66
1428 1522 9.654417 CTTTTCAAATTTGCAGGAAATAAACTG 57.346 29.630 13.54 0.00 32.76 3.16
1429 1523 7.727331 TTCAAATTTGCAGGAAATAAACTGG 57.273 32.000 13.54 0.00 32.76 4.00
1430 1524 5.700373 TCAAATTTGCAGGAAATAAACTGGC 59.300 36.000 13.54 0.00 32.76 4.85
1435 1535 0.702316 AGGAAATAAACTGGCCGGGT 59.298 50.000 18.00 6.33 0.00 5.28
1437 1537 2.309458 AGGAAATAAACTGGCCGGGTTA 59.691 45.455 24.28 24.28 0.00 2.85
1438 1538 2.424601 GGAAATAAACTGGCCGGGTTAC 59.575 50.000 24.54 11.77 0.00 2.50
1454 1554 2.600556 GGTTACCGTTTTGCAAGTCGTC 60.601 50.000 18.71 9.67 0.00 4.20
1456 1556 0.375803 ACCGTTTTGCAAGTCGTCAC 59.624 50.000 18.71 3.76 0.00 3.67
1457 1557 0.316689 CCGTTTTGCAAGTCGTCACC 60.317 55.000 18.71 0.00 0.00 4.02
1458 1558 0.653323 CGTTTTGCAAGTCGTCACCG 60.653 55.000 14.27 0.00 0.00 4.94
1472 1577 1.374125 CACCGCCGACTTGTGATCA 60.374 57.895 0.00 0.00 31.66 2.92
1473 1578 1.079819 ACCGCCGACTTGTGATCAG 60.080 57.895 0.00 0.00 0.00 2.90
1474 1579 1.079819 CCGCCGACTTGTGATCAGT 60.080 57.895 0.00 0.00 0.00 3.41
1475 1580 1.354337 CCGCCGACTTGTGATCAGTG 61.354 60.000 0.00 0.00 0.00 3.66
1476 1581 1.354337 CGCCGACTTGTGATCAGTGG 61.354 60.000 0.00 0.00 0.00 4.00
1477 1582 1.639298 GCCGACTTGTGATCAGTGGC 61.639 60.000 0.00 3.75 0.00 5.01
1478 1583 1.354337 CCGACTTGTGATCAGTGGCG 61.354 60.000 9.90 9.90 32.95 5.69
1479 1584 1.790387 GACTTGTGATCAGTGGCGC 59.210 57.895 0.00 0.00 0.00 6.53
1480 1585 1.639298 GACTTGTGATCAGTGGCGCC 61.639 60.000 22.73 22.73 0.00 6.53
1481 1586 1.672030 CTTGTGATCAGTGGCGCCA 60.672 57.895 29.03 29.03 0.00 5.69
1482 1587 1.915614 CTTGTGATCAGTGGCGCCAC 61.916 60.000 45.27 45.27 46.50 5.01
1491 1596 4.328025 TGGCGCCACTTGCTGCTA 62.328 61.111 29.03 0.00 38.80 3.49
1492 1597 3.804193 GGCGCCACTTGCTGCTAC 61.804 66.667 24.80 0.00 38.80 3.58
1493 1598 4.152625 GCGCCACTTGCTGCTACG 62.153 66.667 0.00 0.00 38.05 3.51
1494 1599 2.738521 CGCCACTTGCTGCTACGT 60.739 61.111 0.00 0.00 38.05 3.57
1495 1600 1.445410 CGCCACTTGCTGCTACGTA 60.445 57.895 0.00 0.00 38.05 3.57
1496 1601 1.683790 CGCCACTTGCTGCTACGTAC 61.684 60.000 0.00 0.00 38.05 3.67
1497 1602 0.389948 GCCACTTGCTGCTACGTACT 60.390 55.000 0.00 0.00 36.87 2.73
1498 1603 1.939838 GCCACTTGCTGCTACGTACTT 60.940 52.381 0.00 0.00 36.87 2.24
1499 1604 2.673043 GCCACTTGCTGCTACGTACTTA 60.673 50.000 0.00 0.00 36.87 2.24
1500 1605 3.782046 CCACTTGCTGCTACGTACTTAT 58.218 45.455 0.00 0.00 0.00 1.73
1501 1606 4.735578 GCCACTTGCTGCTACGTACTTATA 60.736 45.833 0.00 0.00 36.87 0.98
1502 1607 4.738740 CCACTTGCTGCTACGTACTTATAC 59.261 45.833 0.00 0.00 0.00 1.47
1503 1608 5.450137 CCACTTGCTGCTACGTACTTATACT 60.450 44.000 0.00 0.00 0.00 2.12
1504 1609 6.034591 CACTTGCTGCTACGTACTTATACTT 58.965 40.000 0.00 0.00 0.00 2.24
1505 1610 6.196724 CACTTGCTGCTACGTACTTATACTTC 59.803 42.308 0.00 0.00 0.00 3.01
1506 1611 5.823209 TGCTGCTACGTACTTATACTTCA 57.177 39.130 0.00 0.00 0.00 3.02
1507 1612 5.817988 TGCTGCTACGTACTTATACTTCAG 58.182 41.667 0.00 0.00 0.00 3.02
1508 1613 5.356190 TGCTGCTACGTACTTATACTTCAGT 59.644 40.000 0.00 0.00 0.00 3.41
1532 1637 2.104451 TGGTTGCATTTGCTGGAATTGT 59.896 40.909 3.94 0.00 42.66 2.71
1543 1648 9.104965 CATTTGCTGGAATTGTCATTGATTATT 57.895 29.630 0.00 0.00 0.00 1.40
1568 1673 3.472283 AGGTGCATCTGCTGAGATTAG 57.528 47.619 0.00 0.00 36.75 1.73
1569 1674 2.770802 AGGTGCATCTGCTGAGATTAGT 59.229 45.455 0.00 0.00 36.75 2.24
1602 1707 2.555325 GTTGGTGGTTTTGGCTACTACC 59.445 50.000 11.50 11.50 44.69 3.18
1612 1717 1.045911 GGCTACTACCCAGCTGAGCT 61.046 60.000 17.39 0.00 40.77 4.09
1753 1879 4.519191 AAAACAAAACGCATCAGCTTTG 57.481 36.364 0.00 0.00 40.06 2.77
1754 1880 2.138596 ACAAAACGCATCAGCTTTGG 57.861 45.000 0.00 0.00 39.11 3.28
1841 1970 0.664761 CCCAATTTCGCGCATCTGAT 59.335 50.000 8.75 0.00 0.00 2.90
1842 1971 1.066002 CCCAATTTCGCGCATCTGATT 59.934 47.619 8.75 0.00 0.00 2.57
1934 2076 4.521943 CGCAGTCTGCAGCTAATTAAATC 58.478 43.478 24.13 0.00 45.36 2.17
1978 2120 5.410439 GCGATAGTTGAAAGTAAAGGGTTCA 59.590 40.000 0.00 0.00 39.35 3.18
1986 2128 4.513406 AAGTAAAGGGTTCACCACTTCA 57.487 40.909 0.00 0.00 43.89 3.02
2115 2270 1.077501 CCATTGGATCACGCACCCT 60.078 57.895 0.00 0.00 0.00 4.34
2134 2289 4.202620 ACCCTCTCGATCTCCATCTGAATA 60.203 45.833 0.00 0.00 0.00 1.75
2251 2412 0.512952 GCACGCTTGGTAACTGACAG 59.487 55.000 0.00 0.00 37.61 3.51
2252 2413 1.865865 CACGCTTGGTAACTGACAGT 58.134 50.000 1.07 1.07 37.61 3.55
2253 2414 1.526887 CACGCTTGGTAACTGACAGTG 59.473 52.381 9.33 0.00 37.61 3.66
2254 2415 1.411246 ACGCTTGGTAACTGACAGTGA 59.589 47.619 9.33 0.00 37.61 3.41
2255 2416 1.792949 CGCTTGGTAACTGACAGTGAC 59.207 52.381 14.06 14.06 37.61 3.67
2256 2417 2.801699 CGCTTGGTAACTGACAGTGACA 60.802 50.000 22.22 12.82 30.85 3.58
2333 2503 4.637483 ATGGATTTCACATTAACAGCGG 57.363 40.909 0.00 0.00 0.00 5.52
2334 2504 2.163412 TGGATTTCACATTAACAGCGGC 59.837 45.455 0.00 0.00 0.00 6.53
2335 2505 2.440501 GATTTCACATTAACAGCGGCG 58.559 47.619 0.51 0.51 0.00 6.46
2348 2518 0.887836 AGCGGCGATAGTACCGATCA 60.888 55.000 12.98 0.00 46.88 2.92
2380 2555 1.204704 TGACTGATGGATGACACGGAC 59.795 52.381 0.00 0.00 0.00 4.79
2403 2578 5.104374 CCAACGATTAATTTTGCAGAGCAT 58.896 37.500 0.00 0.00 38.76 3.79
2416 2591 0.036105 AGAGCATGTGATTGTGGCGA 60.036 50.000 0.00 0.00 0.00 5.54
2826 3004 4.980805 AACGTCACCACCGCGCAT 62.981 61.111 8.75 0.00 0.00 4.73
3249 3427 3.238597 GAGGATAGAGATGAAGCAGGGT 58.761 50.000 0.00 0.00 0.00 4.34
3387 3565 1.153881 GGTCTACAACGTCGGCCTC 60.154 63.158 0.00 0.00 0.00 4.70
3420 3598 2.774799 GCCCATGGCGGATTCACAC 61.775 63.158 6.09 0.00 39.62 3.82
3495 3679 4.465632 TGCATTTACATAGACCGTGACT 57.534 40.909 0.00 0.00 0.00 3.41
3497 3681 5.968254 TGCATTTACATAGACCGTGACTAA 58.032 37.500 0.00 0.00 0.00 2.24
3520 3704 1.064314 AGCACCTGGGTTGTGTTTACA 60.064 47.619 0.00 0.00 36.11 2.41
3534 3718 0.878416 TTTACACAGGCGGTTCATGC 59.122 50.000 0.00 0.00 0.00 4.06
3538 3722 1.815421 ACAGGCGGTTCATGCGATC 60.815 57.895 0.00 0.00 0.00 3.69
3571 3755 3.641986 GCGACGGTCGGTTTTGCA 61.642 61.111 29.30 0.00 40.84 4.08
3577 3761 0.309302 CGGTCGGTTTTGCATTGTCA 59.691 50.000 0.00 0.00 0.00 3.58
3604 3788 7.614192 TGACAGTATCCATCAACTACTGAGTTA 59.386 37.037 14.06 0.00 44.39 2.24
3605 3789 8.540507 ACAGTATCCATCAACTACTGAGTTAT 57.459 34.615 14.06 0.00 44.39 1.89
3609 3793 9.250624 GTATCCATCAACTACTGAGTTATTGAC 57.749 37.037 11.80 0.00 44.39 3.18
3685 3871 5.359194 TCAACTCCTTGAAAGAAGACAGT 57.641 39.130 0.00 0.00 33.20 3.55
3686 3872 5.745227 TCAACTCCTTGAAAGAAGACAGTT 58.255 37.500 0.00 0.00 33.20 3.16
3687 3873 5.586243 TCAACTCCTTGAAAGAAGACAGTTG 59.414 40.000 14.24 14.24 38.25 3.16
3711 3897 4.129380 TGATCATTCTCTTGGGTTATGCG 58.871 43.478 0.00 0.00 0.00 4.73
3717 3903 6.431543 TCATTCTCTTGGGTTATGCGTAAAAA 59.568 34.615 0.00 0.00 0.00 1.94
3842 4155 2.407090 GTGGCCTTCAGAATTTGCAAC 58.593 47.619 3.32 0.00 0.00 4.17
3886 4199 1.623811 AGCTCTAACCGAAGCTTGGAA 59.376 47.619 18.22 7.76 33.34 3.53
3908 4221 6.094186 GGAAGTCATTTGTCTCCTCCATTAAC 59.906 42.308 0.00 0.00 0.00 2.01
3966 4279 4.937620 GGAGAAACAATAGTGCAGACATGA 59.062 41.667 0.00 0.00 0.00 3.07
3981 4294 8.025445 GTGCAGACATGATTTTCTTGAAACTAT 58.975 33.333 0.00 0.00 0.00 2.12
4000 4313 9.267084 GAAACTATAAGATTTGTCTCCTCCATC 57.733 37.037 0.00 0.00 0.00 3.51
4016 4329 8.602424 TCTCCTCCATCAGTTAAGAAAAATGTA 58.398 33.333 0.00 0.00 0.00 2.29
4032 4345 8.194769 AGAAAAATGTAACAAGGTTTTGACGAT 58.805 29.630 0.00 0.00 37.73 3.73
4236 5860 7.463251 GCAGAAAACGAAATTCAATGCTATTCC 60.463 37.037 0.00 0.00 29.95 3.01
4277 5901 6.983906 AATGTCTGAAACTTTCCCAGAATT 57.016 33.333 0.00 0.00 38.49 2.17
4435 6069 8.834465 AGAATGATCAGCATACTATTGTTGTTC 58.166 33.333 0.09 0.00 35.78 3.18
4438 6072 9.836864 ATGATCAGCATACTATTGTTGTTCTAA 57.163 29.630 0.09 0.00 34.82 2.10
4439 6073 9.317936 TGATCAGCATACTATTGTTGTTCTAAG 57.682 33.333 0.00 0.00 31.60 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.879026 GTCCCGGAAGCATATTCTTTCC 59.121 50.000 0.73 0.00 0.00 3.13
1 2 3.809905 AGTCCCGGAAGCATATTCTTTC 58.190 45.455 0.73 0.00 0.00 2.62
2 3 3.433740 GGAGTCCCGGAAGCATATTCTTT 60.434 47.826 0.73 0.00 0.00 2.52
87 88 2.891580 CGGATACACTACACTAGCCCAT 59.108 50.000 0.00 0.00 0.00 4.00
91 92 3.488721 CCACACGGATACACTACACTAGC 60.489 52.174 0.00 0.00 0.00 3.42
126 127 4.388080 CACGTACGGTCGCACGGA 62.388 66.667 21.06 0.00 42.35 4.69
130 131 2.197643 TATGTGCACGTACGGTCGCA 62.198 55.000 21.06 20.83 32.68 5.10
133 134 1.986698 AACTATGTGCACGTACGGTC 58.013 50.000 21.06 10.98 0.00 4.79
135 136 3.061161 GGTAAAACTATGTGCACGTACGG 59.939 47.826 21.06 9.00 0.00 4.02
141 142 8.964150 CAAGTAAAAAGGTAAAACTATGTGCAC 58.036 33.333 10.75 10.75 0.00 4.57
224 225 1.066929 GCAAACAAGCCCGGATTTCAT 60.067 47.619 0.73 0.00 0.00 2.57
232 233 2.083167 AATTCATGCAAACAAGCCCG 57.917 45.000 0.00 0.00 0.00 6.13
254 255 8.430801 TCAAATTCATTTTCAACAAACCGAAT 57.569 26.923 0.00 0.00 29.57 3.34
269 270 5.663456 AGCCGCATACATTTCAAATTCATT 58.337 33.333 0.00 0.00 0.00 2.57
278 279 5.168526 TCAATTGTAGCCGCATACATTTC 57.831 39.130 5.13 0.00 35.65 2.17
284 285 1.937223 CCGTTCAATTGTAGCCGCATA 59.063 47.619 5.13 0.00 0.00 3.14
297 298 2.919839 TGGAAGGCCACCGTTCAA 59.080 55.556 5.01 0.00 39.92 2.69
314 315 1.134699 CCACTCCGCATACACTGATGT 60.135 52.381 0.00 0.00 43.30 3.06
320 321 0.179108 GAGGACCACTCCGCATACAC 60.179 60.000 0.00 0.00 42.22 2.90
337 338 4.263506 ACCTGTAAATTTCCTCCCACAGAG 60.264 45.833 15.09 9.39 42.83 3.35
338 339 3.655777 ACCTGTAAATTTCCTCCCACAGA 59.344 43.478 15.09 0.00 36.37 3.41
339 340 4.010349 GACCTGTAAATTTCCTCCCACAG 58.990 47.826 8.83 8.83 34.54 3.66
340 341 3.558321 CGACCTGTAAATTTCCTCCCACA 60.558 47.826 0.00 0.00 0.00 4.17
342 343 2.640826 ACGACCTGTAAATTTCCTCCCA 59.359 45.455 0.00 0.00 0.00 4.37
343 344 3.345508 ACGACCTGTAAATTTCCTCCC 57.654 47.619 0.00 0.00 0.00 4.30
344 345 5.727434 TCTAACGACCTGTAAATTTCCTCC 58.273 41.667 0.00 0.00 0.00 4.30
345 346 6.628185 TCTCTAACGACCTGTAAATTTCCTC 58.372 40.000 0.00 0.00 0.00 3.71
358 363 1.067582 CGGGGCATCTCTAACGACC 59.932 63.158 0.00 0.00 0.00 4.79
361 366 1.300233 GAGCGGGGCATCTCTAACG 60.300 63.158 0.00 0.00 0.00 3.18
363 368 0.687757 ACTGAGCGGGGCATCTCTAA 60.688 55.000 0.00 0.00 0.00 2.10
365 370 1.992277 AACTGAGCGGGGCATCTCT 60.992 57.895 0.00 0.00 0.00 3.10
366 371 1.817099 CAACTGAGCGGGGCATCTC 60.817 63.158 0.00 0.00 0.00 2.75
367 372 2.270205 CAACTGAGCGGGGCATCT 59.730 61.111 0.00 0.00 0.00 2.90
368 373 3.512516 GCAACTGAGCGGGGCATC 61.513 66.667 0.00 0.00 0.00 3.91
369 374 3.984193 GAGCAACTGAGCGGGGCAT 62.984 63.158 0.00 0.00 40.15 4.40
371 376 4.704833 TGAGCAACTGAGCGGGGC 62.705 66.667 0.00 0.00 40.15 5.80
372 377 2.743928 GTGAGCAACTGAGCGGGG 60.744 66.667 0.00 0.00 40.15 5.73
373 378 1.165907 TTTGTGAGCAACTGAGCGGG 61.166 55.000 0.00 0.00 40.15 6.13
374 379 0.877071 ATTTGTGAGCAACTGAGCGG 59.123 50.000 0.00 0.00 40.15 5.52
391 425 0.112995 TGGGCTGCACCAAGAAGATT 59.887 50.000 0.00 0.00 42.05 2.40
420 454 0.890996 GGTTGTTGGGCTCTGGTGAG 60.891 60.000 0.00 0.00 42.96 3.51
489 523 0.961753 CTGTCCCAAGCTTTCCAACC 59.038 55.000 0.00 0.00 0.00 3.77
494 528 2.262423 ACTGTCTGTCCCAAGCTTTC 57.738 50.000 0.00 0.00 0.00 2.62
521 555 2.125350 GTGGAAGCCGAGCTGGAG 60.125 66.667 0.00 0.00 39.62 3.86
605 639 0.388659 GTCGGCTGCAGATCTCTGAT 59.611 55.000 20.43 0.00 46.59 2.90
640 674 3.639094 AGAGGGATATGACAGTGTGCTAC 59.361 47.826 0.00 0.00 0.00 3.58
641 675 3.916035 AGAGGGATATGACAGTGTGCTA 58.084 45.455 0.00 0.00 0.00 3.49
642 676 2.756907 AGAGGGATATGACAGTGTGCT 58.243 47.619 0.00 0.00 0.00 4.40
643 677 3.201290 CAAGAGGGATATGACAGTGTGC 58.799 50.000 0.00 0.00 0.00 4.57
644 678 3.201290 GCAAGAGGGATATGACAGTGTG 58.799 50.000 0.00 0.00 0.00 3.82
698 738 0.179070 TGTGGCTTGACTTGTGCGTA 60.179 50.000 0.00 0.00 0.00 4.42
726 766 0.304098 GCAATGCTGAGAAGCTAGCG 59.696 55.000 9.55 0.00 42.74 4.26
761 807 2.536997 TTTAAGCAGCGGGAGGGAGC 62.537 60.000 0.00 0.00 0.00 4.70
768 814 0.465460 TGGCCTATTTAAGCAGCGGG 60.465 55.000 3.32 0.00 0.00 6.13
788 837 0.456221 ACTGGCGTAGGATTGACGAG 59.544 55.000 0.00 0.00 42.98 4.18
793 842 2.213499 GAATGGACTGGCGTAGGATTG 58.787 52.381 0.00 0.00 0.00 2.67
796 845 0.681887 TCGAATGGACTGGCGTAGGA 60.682 55.000 0.00 0.00 0.00 2.94
905 962 1.210885 AAAGCTAGCAAGGCCTCCCT 61.211 55.000 18.83 8.17 45.77 4.20
906 963 0.323816 AAAAGCTAGCAAGGCCTCCC 60.324 55.000 18.83 0.00 0.00 4.30
1059 1140 4.361971 ACGGCGAGGACCAGGAGA 62.362 66.667 16.62 0.00 0.00 3.71
1067 1148 4.043100 TGAGGAGGACGGCGAGGA 62.043 66.667 16.62 0.00 0.00 3.71
1102 1183 0.527113 TGATTTGGCACGCAGAATGG 59.473 50.000 0.00 0.00 35.86 3.16
1104 1185 1.820519 ACATGATTTGGCACGCAGAAT 59.179 42.857 0.00 0.00 0.00 2.40
1105 1186 1.246649 ACATGATTTGGCACGCAGAA 58.753 45.000 0.00 0.00 0.00 3.02
1106 1187 2.009051 CTACATGATTTGGCACGCAGA 58.991 47.619 0.00 0.00 0.00 4.26
1107 1188 1.739466 ACTACATGATTTGGCACGCAG 59.261 47.619 0.00 0.00 0.00 5.18
1112 1193 9.219603 GCTAAGATTATACTACATGATTTGGCA 57.780 33.333 0.00 0.00 0.00 4.92
1113 1194 9.442047 AGCTAAGATTATACTACATGATTTGGC 57.558 33.333 0.00 0.00 0.00 4.52
1171 1252 1.813753 GCACGGAGGCGCTATTTCA 60.814 57.895 7.64 0.00 0.00 2.69
1172 1253 1.491505 GAGCACGGAGGCGCTATTTC 61.492 60.000 7.64 0.00 40.44 2.17
1175 1256 2.835431 AGAGCACGGAGGCGCTAT 60.835 61.111 7.64 0.00 42.29 2.97
1176 1257 3.826754 CAGAGCACGGAGGCGCTA 61.827 66.667 7.64 0.00 42.20 4.26
1182 1274 1.269778 TGACAAGAACAGAGCACGGAG 60.270 52.381 0.00 0.00 0.00 4.63
1185 1277 3.002656 ACATTTGACAAGAACAGAGCACG 59.997 43.478 0.00 0.00 0.00 5.34
1199 1291 1.647346 TGGCCGACGATACATTTGAC 58.353 50.000 0.00 0.00 0.00 3.18
1204 1296 2.872245 CAAAAGATGGCCGACGATACAT 59.128 45.455 0.00 0.00 0.00 2.29
1206 1298 1.003866 GCAAAAGATGGCCGACGATAC 60.004 52.381 0.00 0.00 0.00 2.24
1223 1315 2.932622 GCAACTCAGAAGGATCGAGCAA 60.933 50.000 1.84 0.00 32.81 3.91
1226 1318 1.554392 CGCAACTCAGAAGGATCGAG 58.446 55.000 0.00 0.00 34.51 4.04
1227 1319 0.458543 GCGCAACTCAGAAGGATCGA 60.459 55.000 0.30 0.00 0.00 3.59
1228 1320 1.746727 CGCGCAACTCAGAAGGATCG 61.747 60.000 8.75 0.00 0.00 3.69
1229 1321 0.737715 ACGCGCAACTCAGAAGGATC 60.738 55.000 5.73 0.00 0.00 3.36
1230 1322 0.737715 GACGCGCAACTCAGAAGGAT 60.738 55.000 5.73 0.00 0.00 3.24
1231 1323 1.372997 GACGCGCAACTCAGAAGGA 60.373 57.895 5.73 0.00 0.00 3.36
1232 1324 2.383527 GGACGCGCAACTCAGAAGG 61.384 63.158 5.73 0.00 0.00 3.46
1233 1325 1.016130 ATGGACGCGCAACTCAGAAG 61.016 55.000 5.73 0.00 0.00 2.85
1234 1326 0.602638 AATGGACGCGCAACTCAGAA 60.603 50.000 5.73 0.00 0.00 3.02
1235 1327 0.602638 AAATGGACGCGCAACTCAGA 60.603 50.000 5.73 0.00 0.00 3.27
1236 1328 0.238289 AAAATGGACGCGCAACTCAG 59.762 50.000 5.73 0.00 0.00 3.35
1237 1329 1.514003 TAAAATGGACGCGCAACTCA 58.486 45.000 5.73 0.00 0.00 3.41
1238 1330 2.825086 ATAAAATGGACGCGCAACTC 57.175 45.000 5.73 0.00 0.00 3.01
1239 1331 4.127171 AGATATAAAATGGACGCGCAACT 58.873 39.130 5.73 0.00 0.00 3.16
1240 1332 4.468095 AGATATAAAATGGACGCGCAAC 57.532 40.909 5.73 0.00 0.00 4.17
1241 1333 4.688879 CCTAGATATAAAATGGACGCGCAA 59.311 41.667 5.73 0.00 0.00 4.85
1242 1334 4.242475 CCTAGATATAAAATGGACGCGCA 58.758 43.478 5.73 0.00 0.00 6.09
1243 1335 4.091509 CACCTAGATATAAAATGGACGCGC 59.908 45.833 5.73 0.00 0.00 6.86
1244 1336 5.466819 TCACCTAGATATAAAATGGACGCG 58.533 41.667 3.53 3.53 0.00 6.01
1245 1337 5.348997 GCTCACCTAGATATAAAATGGACGC 59.651 44.000 0.00 0.00 0.00 5.19
1246 1338 6.692486 AGCTCACCTAGATATAAAATGGACG 58.308 40.000 0.00 0.00 0.00 4.79
1247 1339 7.902087 AGAGCTCACCTAGATATAAAATGGAC 58.098 38.462 17.77 0.00 0.00 4.02
1248 1340 9.601810 TTAGAGCTCACCTAGATATAAAATGGA 57.398 33.333 17.77 0.00 24.94 3.41
1249 1341 9.646427 GTTAGAGCTCACCTAGATATAAAATGG 57.354 37.037 17.77 0.00 29.71 3.16
1252 1344 8.861086 CCAGTTAGAGCTCACCTAGATATAAAA 58.139 37.037 17.77 0.00 29.71 1.52
1253 1345 8.005388 ACCAGTTAGAGCTCACCTAGATATAAA 58.995 37.037 17.77 0.00 29.71 1.40
1254 1346 7.527796 ACCAGTTAGAGCTCACCTAGATATAA 58.472 38.462 17.77 0.00 0.00 0.98
1255 1347 7.092748 ACCAGTTAGAGCTCACCTAGATATA 57.907 40.000 17.77 0.00 0.00 0.86
1256 1348 5.959512 ACCAGTTAGAGCTCACCTAGATAT 58.040 41.667 17.77 0.00 0.00 1.63
1257 1349 5.378332 GACCAGTTAGAGCTCACCTAGATA 58.622 45.833 17.77 0.00 0.00 1.98
1258 1350 4.211920 GACCAGTTAGAGCTCACCTAGAT 58.788 47.826 17.77 0.00 0.00 1.98
1259 1351 3.622630 GACCAGTTAGAGCTCACCTAGA 58.377 50.000 17.77 0.00 0.00 2.43
1260 1352 2.356382 CGACCAGTTAGAGCTCACCTAG 59.644 54.545 17.77 3.97 0.00 3.02
1261 1353 2.290768 ACGACCAGTTAGAGCTCACCTA 60.291 50.000 17.77 0.00 0.00 3.08
1262 1354 1.178276 CGACCAGTTAGAGCTCACCT 58.822 55.000 17.77 5.21 0.00 4.00
1263 1355 0.889306 ACGACCAGTTAGAGCTCACC 59.111 55.000 17.77 2.67 0.00 4.02
1264 1356 1.540267 TCACGACCAGTTAGAGCTCAC 59.460 52.381 17.77 6.26 0.00 3.51
1265 1357 1.905637 TCACGACCAGTTAGAGCTCA 58.094 50.000 17.77 0.00 0.00 4.26
1266 1358 3.182967 CAATCACGACCAGTTAGAGCTC 58.817 50.000 5.27 5.27 0.00 4.09
1267 1359 2.563179 ACAATCACGACCAGTTAGAGCT 59.437 45.455 0.00 0.00 0.00 4.09
1268 1360 2.668457 CACAATCACGACCAGTTAGAGC 59.332 50.000 0.00 0.00 0.00 4.09
1269 1361 3.914312 ACACAATCACGACCAGTTAGAG 58.086 45.455 0.00 0.00 0.00 2.43
1270 1362 4.330944 AACACAATCACGACCAGTTAGA 57.669 40.909 0.00 0.00 0.00 2.10
1271 1363 4.625742 CCTAACACAATCACGACCAGTTAG 59.374 45.833 0.00 0.00 37.66 2.34
1272 1364 4.562082 CCTAACACAATCACGACCAGTTA 58.438 43.478 0.00 0.00 0.00 2.24
1273 1365 3.399330 CCTAACACAATCACGACCAGTT 58.601 45.455 0.00 0.00 0.00 3.16
1274 1366 2.870435 GCCTAACACAATCACGACCAGT 60.870 50.000 0.00 0.00 0.00 4.00
1275 1367 1.732259 GCCTAACACAATCACGACCAG 59.268 52.381 0.00 0.00 0.00 4.00
1276 1368 1.070914 TGCCTAACACAATCACGACCA 59.929 47.619 0.00 0.00 0.00 4.02
1277 1369 1.803334 TGCCTAACACAATCACGACC 58.197 50.000 0.00 0.00 0.00 4.79
1278 1370 4.034048 CCTAATGCCTAACACAATCACGAC 59.966 45.833 0.00 0.00 0.00 4.34
1279 1371 4.188462 CCTAATGCCTAACACAATCACGA 58.812 43.478 0.00 0.00 0.00 4.35
1280 1372 3.242739 GCCTAATGCCTAACACAATCACG 60.243 47.826 0.00 0.00 0.00 4.35
1281 1373 3.694072 TGCCTAATGCCTAACACAATCAC 59.306 43.478 0.00 0.00 40.16 3.06
1282 1374 3.961849 TGCCTAATGCCTAACACAATCA 58.038 40.909 0.00 0.00 40.16 2.57
1283 1375 4.981806 TTGCCTAATGCCTAACACAATC 57.018 40.909 0.00 0.00 40.16 2.67
1284 1376 5.203528 AGATTGCCTAATGCCTAACACAAT 58.796 37.500 0.00 0.00 40.16 2.71
1285 1377 4.599041 AGATTGCCTAATGCCTAACACAA 58.401 39.130 0.00 0.00 40.16 3.33
1286 1378 4.235079 AGATTGCCTAATGCCTAACACA 57.765 40.909 0.00 0.00 40.16 3.72
1287 1379 5.611374 TCTAGATTGCCTAATGCCTAACAC 58.389 41.667 0.00 0.00 40.16 3.32
1288 1380 5.743130 GCTCTAGATTGCCTAATGCCTAACA 60.743 44.000 0.00 0.00 40.16 2.41
1289 1381 4.693095 GCTCTAGATTGCCTAATGCCTAAC 59.307 45.833 0.00 0.00 40.16 2.34
1290 1382 4.594920 AGCTCTAGATTGCCTAATGCCTAA 59.405 41.667 0.00 0.00 40.16 2.69
1291 1383 4.163427 AGCTCTAGATTGCCTAATGCCTA 58.837 43.478 0.00 0.00 40.16 3.93
1292 1384 2.978278 AGCTCTAGATTGCCTAATGCCT 59.022 45.455 0.00 0.00 40.16 4.75
1293 1385 3.007831 AGAGCTCTAGATTGCCTAATGCC 59.992 47.826 16.50 0.00 40.16 4.40
1294 1386 4.270245 AGAGCTCTAGATTGCCTAATGC 57.730 45.455 16.50 0.00 41.77 3.56
1295 1387 6.867816 CAGTTAGAGCTCTAGATTGCCTAATG 59.132 42.308 22.19 11.36 30.75 1.90
1296 1388 6.518200 GCAGTTAGAGCTCTAGATTGCCTAAT 60.518 42.308 28.21 11.51 31.07 1.73
1297 1389 5.221342 GCAGTTAGAGCTCTAGATTGCCTAA 60.221 44.000 28.21 12.93 31.07 2.69
1298 1390 4.279671 GCAGTTAGAGCTCTAGATTGCCTA 59.720 45.833 28.21 12.13 31.07 3.93
1299 1391 3.069443 GCAGTTAGAGCTCTAGATTGCCT 59.931 47.826 28.21 16.18 31.07 4.75
1300 1392 3.389221 GCAGTTAGAGCTCTAGATTGCC 58.611 50.000 28.21 18.19 31.07 4.52
1301 1393 3.049206 CGCAGTTAGAGCTCTAGATTGC 58.951 50.000 28.42 28.42 32.51 3.56
1302 1394 4.536065 CTCGCAGTTAGAGCTCTAGATTG 58.464 47.826 22.19 20.36 0.00 2.67
1303 1395 4.829064 CTCGCAGTTAGAGCTCTAGATT 57.171 45.455 22.19 10.15 0.00 2.40
1312 1404 1.226717 GGGTCGCTCGCAGTTAGAG 60.227 63.158 0.00 0.00 38.68 2.43
1313 1405 1.320344 ATGGGTCGCTCGCAGTTAGA 61.320 55.000 4.04 0.00 42.07 2.10
1314 1406 0.460284 AATGGGTCGCTCGCAGTTAG 60.460 55.000 4.04 0.00 42.07 2.34
1315 1407 0.036765 AAATGGGTCGCTCGCAGTTA 60.037 50.000 7.94 0.00 43.36 2.24
1316 1408 1.298859 GAAATGGGTCGCTCGCAGTT 61.299 55.000 9.04 9.04 46.63 3.16
1317 1409 1.741770 GAAATGGGTCGCTCGCAGT 60.742 57.895 4.04 0.00 42.07 4.40
1318 1410 2.802667 CGAAATGGGTCGCTCGCAG 61.803 63.158 4.04 0.00 42.07 5.18
1319 1411 2.813474 CGAAATGGGTCGCTCGCA 60.813 61.111 0.63 0.63 42.92 5.10
1320 1412 2.292802 GAACGAAATGGGTCGCTCGC 62.293 60.000 0.00 0.00 45.00 5.03
1321 1413 1.693083 GGAACGAAATGGGTCGCTCG 61.693 60.000 0.00 0.00 45.00 5.03
1322 1414 0.391263 AGGAACGAAATGGGTCGCTC 60.391 55.000 0.00 0.00 45.00 5.03
1323 1415 0.673644 CAGGAACGAAATGGGTCGCT 60.674 55.000 0.00 0.00 45.00 4.93
1324 1416 1.644786 CCAGGAACGAAATGGGTCGC 61.645 60.000 0.00 0.00 45.00 5.19
1325 1417 1.644786 GCCAGGAACGAAATGGGTCG 61.645 60.000 0.00 0.00 46.54 4.79
1326 1418 0.322546 AGCCAGGAACGAAATGGGTC 60.323 55.000 0.00 0.00 40.73 4.46
1327 1419 0.112412 AAGCCAGGAACGAAATGGGT 59.888 50.000 0.00 0.00 46.38 4.51
1328 1420 0.811281 GAAGCCAGGAACGAAATGGG 59.189 55.000 0.00 0.00 34.52 4.00
1329 1421 0.447801 CGAAGCCAGGAACGAAATGG 59.552 55.000 0.00 0.00 37.15 3.16
1330 1422 1.128692 GACGAAGCCAGGAACGAAATG 59.871 52.381 0.00 0.00 0.00 2.32
1331 1423 1.270625 TGACGAAGCCAGGAACGAAAT 60.271 47.619 0.00 0.00 0.00 2.17
1332 1424 0.105224 TGACGAAGCCAGGAACGAAA 59.895 50.000 0.00 0.00 0.00 3.46
1333 1425 0.320374 ATGACGAAGCCAGGAACGAA 59.680 50.000 0.00 0.00 0.00 3.85
1334 1426 0.320374 AATGACGAAGCCAGGAACGA 59.680 50.000 0.00 0.00 0.00 3.85
1335 1427 0.443869 CAATGACGAAGCCAGGAACG 59.556 55.000 0.00 0.00 0.00 3.95
1336 1428 0.169009 GCAATGACGAAGCCAGGAAC 59.831 55.000 0.00 0.00 0.00 3.62
1337 1429 0.036732 AGCAATGACGAAGCCAGGAA 59.963 50.000 0.00 0.00 0.00 3.36
1338 1430 0.674581 CAGCAATGACGAAGCCAGGA 60.675 55.000 0.00 0.00 0.00 3.86
1339 1431 0.674581 TCAGCAATGACGAAGCCAGG 60.675 55.000 0.00 0.00 0.00 4.45
1340 1432 1.376543 ATCAGCAATGACGAAGCCAG 58.623 50.000 0.00 0.00 0.00 4.85
1341 1433 1.469703 CAATCAGCAATGACGAAGCCA 59.530 47.619 0.00 0.00 0.00 4.75
1342 1434 1.796617 GCAATCAGCAATGACGAAGCC 60.797 52.381 0.00 0.00 44.79 4.35
1343 1435 1.542544 GCAATCAGCAATGACGAAGC 58.457 50.000 0.00 0.00 44.79 3.86
1344 1436 1.806511 CGCAATCAGCAATGACGAAG 58.193 50.000 0.00 0.00 46.13 3.79
1345 1437 0.179192 GCGCAATCAGCAATGACGAA 60.179 50.000 0.30 0.00 46.13 3.85
1346 1438 1.425031 GCGCAATCAGCAATGACGA 59.575 52.632 0.30 0.00 46.13 4.20
1347 1439 1.931137 CGCGCAATCAGCAATGACG 60.931 57.895 8.75 0.00 46.13 4.35
1348 1440 0.028505 ATCGCGCAATCAGCAATGAC 59.971 50.000 8.75 0.00 46.13 3.06
1349 1441 0.734309 AATCGCGCAATCAGCAATGA 59.266 45.000 8.75 0.00 46.13 2.57
1350 1442 1.552226 AAATCGCGCAATCAGCAATG 58.448 45.000 8.75 0.00 46.13 2.82
1351 1443 1.921887 CAAAATCGCGCAATCAGCAAT 59.078 42.857 8.75 0.00 46.13 3.56
1352 1444 1.338765 CAAAATCGCGCAATCAGCAA 58.661 45.000 8.75 0.00 46.13 3.91
1353 1445 1.072116 GCAAAATCGCGCAATCAGCA 61.072 50.000 8.75 0.00 46.13 4.41
1354 1446 1.627424 GCAAAATCGCGCAATCAGC 59.373 52.632 8.75 0.00 40.87 4.26
1355 1447 0.179156 AGGCAAAATCGCGCAATCAG 60.179 50.000 8.75 0.00 0.00 2.90
1356 1448 1.090728 TAGGCAAAATCGCGCAATCA 58.909 45.000 8.75 0.00 0.00 2.57
1357 1449 2.405892 ATAGGCAAAATCGCGCAATC 57.594 45.000 8.75 0.00 0.00 2.67
1358 1450 4.503741 AATATAGGCAAAATCGCGCAAT 57.496 36.364 8.75 0.00 0.00 3.56
1359 1451 3.980646 AATATAGGCAAAATCGCGCAA 57.019 38.095 8.75 0.00 0.00 4.85
1360 1452 3.980646 AAATATAGGCAAAATCGCGCA 57.019 38.095 8.75 0.00 0.00 6.09
1361 1453 4.976116 AGAAAAATATAGGCAAAATCGCGC 59.024 37.500 0.00 0.00 0.00 6.86
1362 1454 5.625311 GGAGAAAAATATAGGCAAAATCGCG 59.375 40.000 0.00 0.00 0.00 5.87
1363 1455 5.920840 GGGAGAAAAATATAGGCAAAATCGC 59.079 40.000 0.00 0.00 0.00 4.58
1369 1461 4.204012 CACGGGGAGAAAAATATAGGCAA 58.796 43.478 0.00 0.00 0.00 4.52
1370 1462 3.201266 ACACGGGGAGAAAAATATAGGCA 59.799 43.478 0.00 0.00 0.00 4.75
1371 1463 3.816994 ACACGGGGAGAAAAATATAGGC 58.183 45.455 0.00 0.00 0.00 3.93
1389 1483 7.391016 CAAATTTGAAAAGAAACCTCGAACAC 58.609 34.615 13.08 0.00 0.00 3.32
1390 1484 6.035542 GCAAATTTGAAAAGAAACCTCGAACA 59.964 34.615 22.31 0.00 0.00 3.18
1391 1485 6.035542 TGCAAATTTGAAAAGAAACCTCGAAC 59.964 34.615 22.31 0.00 0.00 3.95
1392 1486 6.102663 TGCAAATTTGAAAAGAAACCTCGAA 58.897 32.000 22.31 0.00 0.00 3.71
1393 1487 5.655488 TGCAAATTTGAAAAGAAACCTCGA 58.345 33.333 22.31 0.00 0.00 4.04
1394 1488 5.050837 CCTGCAAATTTGAAAAGAAACCTCG 60.051 40.000 22.31 0.00 0.00 4.63
1395 1489 6.048509 TCCTGCAAATTTGAAAAGAAACCTC 58.951 36.000 22.31 0.05 0.00 3.85
1396 1490 5.988287 TCCTGCAAATTTGAAAAGAAACCT 58.012 33.333 22.31 0.00 0.00 3.50
1397 1491 6.676237 TTCCTGCAAATTTGAAAAGAAACC 57.324 33.333 22.31 1.28 0.00 3.27
1401 1495 9.612066 AGTTTATTTCCTGCAAATTTGAAAAGA 57.388 25.926 22.31 8.30 36.09 2.52
1402 1496 9.654417 CAGTTTATTTCCTGCAAATTTGAAAAG 57.346 29.630 22.31 14.13 36.09 2.27
1403 1497 8.619546 CCAGTTTATTTCCTGCAAATTTGAAAA 58.380 29.630 22.31 14.51 36.09 2.29
1404 1498 7.255070 GCCAGTTTATTTCCTGCAAATTTGAAA 60.255 33.333 22.31 12.90 36.09 2.69
1405 1499 6.204495 GCCAGTTTATTTCCTGCAAATTTGAA 59.796 34.615 22.31 10.82 36.09 2.69
1407 1501 5.106594 GGCCAGTTTATTTCCTGCAAATTTG 60.107 40.000 14.03 14.03 36.09 2.32
1408 1502 5.003160 GGCCAGTTTATTTCCTGCAAATTT 58.997 37.500 0.00 0.00 36.09 1.82
1409 1503 4.578871 GGCCAGTTTATTTCCTGCAAATT 58.421 39.130 0.00 0.00 36.09 1.82
1411 1505 2.029470 CGGCCAGTTTATTTCCTGCAAA 60.029 45.455 2.24 0.00 0.00 3.68
1413 1507 1.173043 CGGCCAGTTTATTTCCTGCA 58.827 50.000 2.24 0.00 0.00 4.41
1414 1508 0.455815 CCGGCCAGTTTATTTCCTGC 59.544 55.000 2.24 0.00 0.00 4.85
1415 1509 1.102978 CCCGGCCAGTTTATTTCCTG 58.897 55.000 2.24 0.00 0.00 3.86
1417 1511 1.552578 AACCCGGCCAGTTTATTTCC 58.447 50.000 2.24 0.00 0.00 3.13
1418 1512 2.424601 GGTAACCCGGCCAGTTTATTTC 59.575 50.000 13.01 1.35 0.00 2.17
1421 1515 3.888424 GGTAACCCGGCCAGTTTAT 57.112 52.632 13.01 0.00 0.00 1.40
1435 1535 2.030701 GTGACGACTTGCAAAACGGTAA 59.969 45.455 22.34 9.69 31.74 2.85
1437 1537 0.375803 GTGACGACTTGCAAAACGGT 59.624 50.000 22.34 8.93 31.74 4.83
1438 1538 0.316689 GGTGACGACTTGCAAAACGG 60.317 55.000 22.34 5.98 31.74 4.44
1454 1554 1.354337 CTGATCACAAGTCGGCGGTG 61.354 60.000 7.21 7.42 0.00 4.94
1456 1556 1.079819 ACTGATCACAAGTCGGCGG 60.080 57.895 7.21 0.00 0.00 6.13
1457 1557 1.354337 CCACTGATCACAAGTCGGCG 61.354 60.000 0.00 0.00 0.00 6.46
1458 1558 1.639298 GCCACTGATCACAAGTCGGC 61.639 60.000 0.00 1.73 0.00 5.54
1461 1561 1.639298 GGCGCCACTGATCACAAGTC 61.639 60.000 24.80 0.00 0.00 3.01
1478 1583 0.389948 AGTACGTAGCAGCAAGTGGC 60.390 55.000 0.00 0.00 45.30 5.01
1479 1584 2.080286 AAGTACGTAGCAGCAAGTGG 57.920 50.000 0.00 0.00 0.00 4.00
1480 1585 5.579718 AGTATAAGTACGTAGCAGCAAGTG 58.420 41.667 0.00 0.00 35.92 3.16
1481 1586 5.831702 AGTATAAGTACGTAGCAGCAAGT 57.168 39.130 0.00 0.00 35.92 3.16
1482 1587 6.263344 TGAAGTATAAGTACGTAGCAGCAAG 58.737 40.000 0.00 0.00 35.92 4.01
1483 1588 6.127814 ACTGAAGTATAAGTACGTAGCAGCAA 60.128 38.462 0.00 0.00 35.92 3.91
1484 1589 5.356190 ACTGAAGTATAAGTACGTAGCAGCA 59.644 40.000 0.00 0.00 35.92 4.41
1485 1590 5.819059 ACTGAAGTATAAGTACGTAGCAGC 58.181 41.667 0.00 0.00 35.92 5.25
1486 1591 8.063038 CACTACTGAAGTATAAGTACGTAGCAG 58.937 40.741 0.00 0.00 35.76 4.24
1487 1592 7.011763 CCACTACTGAAGTATAAGTACGTAGCA 59.988 40.741 0.00 0.00 35.76 3.49
1488 1593 7.011857 ACCACTACTGAAGTATAAGTACGTAGC 59.988 40.741 0.00 0.00 35.76 3.58
1489 1594 8.430801 ACCACTACTGAAGTATAAGTACGTAG 57.569 38.462 0.00 0.00 35.76 3.51
1490 1595 8.668353 CAACCACTACTGAAGTATAAGTACGTA 58.332 37.037 0.00 0.00 35.76 3.57
1491 1596 7.533426 CAACCACTACTGAAGTATAAGTACGT 58.467 38.462 0.00 0.00 35.76 3.57
1492 1597 6.471519 GCAACCACTACTGAAGTATAAGTACG 59.528 42.308 0.00 0.00 35.76 3.67
1493 1598 7.318141 TGCAACCACTACTGAAGTATAAGTAC 58.682 38.462 0.00 0.00 35.76 2.73
1494 1599 7.470935 TGCAACCACTACTGAAGTATAAGTA 57.529 36.000 0.00 0.00 35.76 2.24
1495 1600 6.354794 TGCAACCACTACTGAAGTATAAGT 57.645 37.500 0.00 0.00 35.76 2.24
1496 1601 7.849804 AATGCAACCACTACTGAAGTATAAG 57.150 36.000 0.00 0.00 35.76 1.73
1497 1602 7.361713 GCAAATGCAACCACTACTGAAGTATAA 60.362 37.037 0.00 0.00 41.59 0.98
1498 1603 6.093495 GCAAATGCAACCACTACTGAAGTATA 59.907 38.462 0.00 0.00 41.59 1.47
1499 1604 5.106157 GCAAATGCAACCACTACTGAAGTAT 60.106 40.000 0.00 0.00 41.59 2.12
1500 1605 4.215399 GCAAATGCAACCACTACTGAAGTA 59.785 41.667 0.00 0.00 41.59 2.24
1501 1606 3.004734 GCAAATGCAACCACTACTGAAGT 59.995 43.478 0.00 0.00 41.59 3.01
1502 1607 3.254166 AGCAAATGCAACCACTACTGAAG 59.746 43.478 8.28 0.00 45.16 3.02
1503 1608 3.004629 CAGCAAATGCAACCACTACTGAA 59.995 43.478 8.28 0.00 45.16 3.02
1504 1609 2.553602 CAGCAAATGCAACCACTACTGA 59.446 45.455 8.28 0.00 45.16 3.41
1505 1610 2.352030 CCAGCAAATGCAACCACTACTG 60.352 50.000 8.28 0.00 45.16 2.74
1506 1611 1.888512 CCAGCAAATGCAACCACTACT 59.111 47.619 8.28 0.00 45.16 2.57
1507 1612 1.885887 TCCAGCAAATGCAACCACTAC 59.114 47.619 8.28 0.00 45.16 2.73
1508 1613 2.284754 TCCAGCAAATGCAACCACTA 57.715 45.000 8.28 0.00 45.16 2.74
1532 1637 7.013559 CAGATGCACCTACCAAATAATCAATGA 59.986 37.037 0.00 0.00 0.00 2.57
1543 1648 0.983467 TCAGCAGATGCACCTACCAA 59.017 50.000 7.68 0.00 45.16 3.67
1568 1673 4.755266 ACCACCAACACCTAGATATGAC 57.245 45.455 0.00 0.00 0.00 3.06
1569 1674 5.772393 AAACCACCAACACCTAGATATGA 57.228 39.130 0.00 0.00 0.00 2.15
1616 1721 4.626081 ATAGGGCCGCCATGTCGC 62.626 66.667 12.58 0.00 0.00 5.19
1641 1747 0.029834 GCATTACTTGCGGCATGGAG 59.970 55.000 18.54 9.42 42.54 3.86
1694 1800 9.003112 CAAATCTCAGCGTATCATTTAAAGTTG 57.997 33.333 0.00 0.00 0.00 3.16
1841 1970 0.183492 AAGCACAGCTCAGGACCAAA 59.817 50.000 0.00 0.00 38.25 3.28
1842 1971 0.535780 CAAGCACAGCTCAGGACCAA 60.536 55.000 0.00 0.00 38.25 3.67
1934 2076 2.205074 CCCAAGTTGCGAGCATACTAG 58.795 52.381 0.00 0.00 0.00 2.57
1978 2120 2.504367 GTGCATTACTGGTGAAGTGGT 58.496 47.619 0.00 0.00 40.26 4.16
1986 2128 2.489938 ATTCCACGTGCATTACTGGT 57.510 45.000 10.91 0.00 32.63 4.00
2115 2270 7.667635 ACAGTTATATTCAGATGGAGATCGAGA 59.332 37.037 0.00 0.00 33.34 4.04
2177 2338 1.448540 AGTGCAAGGCGATCGGAAG 60.449 57.895 18.30 0.00 0.00 3.46
2251 2412 5.520288 ACATAGCGATTTATCAGTGTGTCAC 59.480 40.000 0.00 0.00 34.10 3.67
2252 2413 5.660460 ACATAGCGATTTATCAGTGTGTCA 58.340 37.500 0.00 0.00 0.00 3.58
2253 2414 6.589830 AACATAGCGATTTATCAGTGTGTC 57.410 37.500 0.00 0.00 0.00 3.67
2254 2415 6.985188 AAACATAGCGATTTATCAGTGTGT 57.015 33.333 0.00 0.00 0.00 3.72
2255 2416 9.935682 ATAAAAACATAGCGATTTATCAGTGTG 57.064 29.630 0.00 0.00 0.00 3.82
2256 2417 9.935682 CATAAAAACATAGCGATTTATCAGTGT 57.064 29.630 0.00 0.00 0.00 3.55
2326 2496 1.065273 CGGTACTATCGCCGCTGTT 59.935 57.895 0.00 0.00 41.53 3.16
2333 2503 0.590195 ACGGTGATCGGTACTATCGC 59.410 55.000 11.53 11.53 44.45 4.58
2334 2504 1.600957 ACACGGTGATCGGTACTATCG 59.399 52.381 16.29 0.00 44.45 2.92
2335 2505 4.060900 TCTACACGGTGATCGGTACTATC 58.939 47.826 16.29 0.00 44.45 2.08
2348 2518 3.513912 TCCATCAGTCATTTCTACACGGT 59.486 43.478 0.00 0.00 0.00 4.83
2380 2555 4.484236 TGCTCTGCAAAATTAATCGTTGG 58.516 39.130 11.69 0.00 34.76 3.77
2416 2591 2.124151 GCCGATGGACAGGGCATT 60.124 61.111 11.05 0.00 46.13 3.56
2610 2785 1.003355 CACCGTGGAGCTGACCATT 60.003 57.895 0.00 0.00 42.17 3.16
2826 3004 1.451927 GCCCATGATGTCCAGCGAA 60.452 57.895 0.00 0.00 0.00 4.70
3439 3617 1.995484 TCGAGCAAGCGAATCAAGAAG 59.005 47.619 0.00 0.00 37.35 2.85
3520 3704 1.815421 GATCGCATGAACCGCCTGT 60.815 57.895 0.00 0.00 0.00 4.00
3534 3718 1.466529 CGATGGCGATGAGTAGGATCG 60.467 57.143 0.00 0.00 44.49 3.69
3538 3722 4.251760 GCGATGGCGATGAGTAGG 57.748 61.111 0.00 0.00 40.82 3.18
3564 3748 5.801947 GGATACTGTCATGACAATGCAAAAC 59.198 40.000 27.63 13.66 41.33 2.43
3571 3755 6.656902 AGTTGATGGATACTGTCATGACAAT 58.343 36.000 27.63 21.63 41.33 2.71
3577 3761 6.609212 ACTCAGTAGTTGATGGATACTGTCAT 59.391 38.462 10.43 0.00 44.33 3.06
3604 3788 1.271379 CCTTCACCCTTCACCGTCAAT 60.271 52.381 0.00 0.00 0.00 2.57
3605 3789 0.107831 CCTTCACCCTTCACCGTCAA 59.892 55.000 0.00 0.00 0.00 3.18
3609 3793 1.302511 CACCCTTCACCCTTCACCG 60.303 63.158 0.00 0.00 0.00 4.94
3685 3871 6.263842 GCATAACCCAAGAGAATGATCATCAA 59.736 38.462 9.06 0.00 0.00 2.57
3686 3872 5.766670 GCATAACCCAAGAGAATGATCATCA 59.233 40.000 9.06 0.00 0.00 3.07
3687 3873 5.106791 CGCATAACCCAAGAGAATGATCATC 60.107 44.000 9.06 2.96 0.00 2.92
3745 3931 3.632333 CTCAAAAGGAGGGGGATTTACC 58.368 50.000 0.00 0.00 40.13 2.85
3769 3955 7.205297 GCATTGCCAAAATACATCAGTTCTAT 58.795 34.615 0.00 0.00 0.00 1.98
3809 4122 2.673523 GCCACCAGAGCACATCCT 59.326 61.111 0.00 0.00 0.00 3.24
3842 4155 9.928236 GCTAATCTAAAGTGAATAAGAAGCAAG 57.072 33.333 0.00 0.00 0.00 4.01
3886 4199 6.380079 AGTTAATGGAGGAGACAAATGACT 57.620 37.500 0.00 0.00 0.00 3.41
3981 4294 6.627087 AACTGATGGAGGAGACAAATCTTA 57.373 37.500 0.00 0.00 34.34 2.10
4016 4329 5.591067 TGTTCCTTATCGTCAAAACCTTGTT 59.409 36.000 0.00 0.00 33.94 2.83
4027 4340 6.259638 TGTTTTGTTGTTGTTCCTTATCGTC 58.740 36.000 0.00 0.00 0.00 4.20
4032 4345 7.392113 TCTCTCTTGTTTTGTTGTTGTTCCTTA 59.608 33.333 0.00 0.00 0.00 2.69
4394 6028 7.011295 GCTGATCATTCTAGGAAACTTTCAGAG 59.989 40.741 0.00 0.69 43.67 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.