Multiple sequence alignment - TraesCS3B01G278000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G278000 chr3B 100.000 5433 0 0 1 5433 448235631 448230199 0.000000e+00 10033.0
1 TraesCS3B01G278000 chr3B 95.455 88 4 0 2513 2600 406870599 406870686 2.040000e-29 141.0
2 TraesCS3B01G278000 chr3B 93.878 49 1 2 5342 5389 300309849 300309896 7.550000e-09 73.1
3 TraesCS3B01G278000 chr3D 97.372 2245 54 3 2595 4836 348431826 348429584 0.000000e+00 3814.0
4 TraesCS3B01G278000 chr3D 93.166 1434 34 20 436 1847 348433920 348432529 0.000000e+00 2047.0
5 TraesCS3B01G278000 chr3D 96.224 715 22 4 1799 2511 348432536 348431825 0.000000e+00 1166.0
6 TraesCS3B01G278000 chr3D 83.129 326 34 9 5 317 348434700 348434383 1.490000e-70 278.0
7 TraesCS3B01G278000 chr3D 90.291 103 8 2 2514 2615 404291592 404291693 3.410000e-27 134.0
8 TraesCS3B01G278000 chr3D 80.000 90 18 0 4043 4132 471088001 471087912 3.510000e-07 67.6
9 TraesCS3B01G278000 chr3A 90.524 2269 74 42 320 2511 467352462 467350258 0.000000e+00 2868.0
10 TraesCS3B01G278000 chr3A 97.270 1282 33 2 3557 4836 467348719 467347438 0.000000e+00 2172.0
11 TraesCS3B01G278000 chr3A 96.304 974 29 2 2595 3561 467350259 467349286 0.000000e+00 1592.0
12 TraesCS3B01G278000 chr3A 93.443 61 2 2 4884 4944 101905490 101905548 7.500000e-14 89.8
13 TraesCS3B01G278000 chr3A 81.034 116 8 5 5172 5282 467346873 467346767 4.510000e-11 80.5
14 TraesCS3B01G278000 chr5B 97.674 86 2 0 2512 2597 227895253 227895338 1.220000e-31 148.0
15 TraesCS3B01G278000 chr5B 95.833 48 2 0 5342 5389 697775367 697775414 1.620000e-10 78.7
16 TraesCS3B01G278000 chr1B 98.780 82 1 0 2512 2593 543023072 543023153 4.390000e-31 147.0
17 TraesCS3B01G278000 chr1B 93.443 61 1 2 4884 4944 421421304 421421361 2.700000e-13 87.9
18 TraesCS3B01G278000 chr1B 86.420 81 7 4 5352 5431 298117584 298117507 9.700000e-13 86.1
19 TraesCS3B01G278000 chr2B 96.552 87 3 0 2514 2600 397451407 397451493 1.580000e-30 145.0
20 TraesCS3B01G278000 chr2B 94.000 50 2 1 5341 5389 795449825 795449776 2.100000e-09 75.0
21 TraesCS3B01G278000 chr1D 96.591 88 2 1 2514 2600 315816921 315817008 1.580000e-30 145.0
22 TraesCS3B01G278000 chr1D 87.013 77 8 2 4884 4960 176742341 176742415 9.700000e-13 86.1
23 TraesCS3B01G278000 chr7B 98.750 80 1 0 2514 2593 591048682 591048761 5.670000e-30 143.0
24 TraesCS3B01G278000 chr7B 88.889 72 8 0 5353 5424 731259027 731258956 7.500000e-14 89.8
25 TraesCS3B01G278000 chr7B 93.878 49 2 1 5351 5399 7545643 7545690 7.550000e-09 73.1
26 TraesCS3B01G278000 chr2D 93.617 94 5 1 2514 2606 633439821 633439914 7.340000e-29 139.0
27 TraesCS3B01G278000 chr2D 95.918 49 2 0 5353 5401 570408347 570408395 4.510000e-11 80.5
28 TraesCS3B01G278000 chr2D 100.000 32 0 0 5027 5058 331763147 331763116 5.880000e-05 60.2
29 TraesCS3B01G278000 chr2A 89.091 110 9 3 2514 2623 154116409 154116303 3.410000e-27 134.0
30 TraesCS3B01G278000 chr2A 100.000 29 0 0 5027 5055 439397968 439397940 3.000000e-03 54.7
31 TraesCS3B01G278000 chr7D 93.548 62 2 1 4884 4943 177987462 177987523 2.080000e-14 91.6
32 TraesCS3B01G278000 chr7D 92.308 65 2 2 4884 4948 13036162 13036223 7.500000e-14 89.8
33 TraesCS3B01G278000 chr7D 93.750 48 1 2 5342 5389 632213340 632213385 2.710000e-08 71.3
34 TraesCS3B01G278000 chr7D 100.000 29 0 0 5035 5063 537664649 537664621 3.000000e-03 54.7
35 TraesCS3B01G278000 chr7A 92.188 64 3 1 4884 4947 424298714 424298775 7.500000e-14 89.8
36 TraesCS3B01G278000 chr5D 91.045 67 4 1 4884 4948 370941354 370941288 7.500000e-14 89.8
37 TraesCS3B01G278000 chr5D 90.000 70 4 2 4883 4952 500865663 500865597 2.700000e-13 87.9
38 TraesCS3B01G278000 chr4D 90.909 66 5 1 4884 4948 426613945 426613880 2.700000e-13 87.9
39 TraesCS3B01G278000 chr5A 93.750 48 1 2 5343 5389 220935223 220935269 2.710000e-08 71.3
40 TraesCS3B01G278000 chr5A 100.000 29 0 0 5030 5058 358486305 358486333 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G278000 chr3B 448230199 448235631 5432 True 10033.000 10033 100.00000 1 5433 1 chr3B.!!$R1 5432
1 TraesCS3B01G278000 chr3D 348429584 348434700 5116 True 1826.250 3814 92.47275 5 4836 4 chr3D.!!$R2 4831
2 TraesCS3B01G278000 chr3A 467346767 467352462 5695 True 1678.125 2868 91.28300 320 5282 4 chr3A.!!$R1 4962

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.099436 GTCATCGCCACAAGATTGCC 59.901 55.000 0.00 0.00 0.00 4.52 F
280 293 0.109597 GAGTTTCAATGCCGTGCAGG 60.110 55.000 0.00 0.00 43.65 4.85 F
1210 1597 0.394352 GGAATTCATGGCCACGTCCT 60.394 55.000 8.16 0.00 0.00 3.85 F
1665 2078 0.528924 CGATGGTCCGTTCACTGGTA 59.471 55.000 0.00 0.00 0.00 3.25 F
1914 2371 1.270465 CCTGACTGTGTGCATCACTCA 60.270 52.381 16.70 12.78 46.27 3.41 F
2592 3062 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20 F
3762 4814 0.311165 CTCCGTACAGATACTGGCCG 59.689 60.000 0.00 0.00 35.51 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1219 1606 0.689745 CGGAGGATCAACCCCACCTA 60.690 60.000 0.0 0.0 40.05 3.08 R
1221 1608 0.979187 TACGGAGGATCAACCCCACC 60.979 60.000 0.0 0.0 40.05 4.61 R
2571 3041 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.0 0.0 0.00 3.16 R
2695 3168 2.054799 TGCCCTCTTACACCAGTTCTT 58.945 47.619 0.0 0.0 0.00 2.52 R
3280 3761 2.595124 TTCTGTGCAAAGAGTGTCGA 57.405 45.000 6.7 0.0 0.00 4.20 R
4413 5465 1.153489 CACATCAGAGGCCCAGACG 60.153 63.158 0.0 0.0 0.00 4.18 R
5305 6636 0.033503 ATTCCACCCCCGTTGATTCC 60.034 55.000 0.0 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.622436 CCTTAAGTCCAAGCTCCTTCG 58.378 52.381 0.97 0.00 0.00 3.79
29 30 1.888436 AAGCTCCTTCGTCATCGCCA 61.888 55.000 0.00 0.00 36.96 5.69
36 37 2.002586 CTTCGTCATCGCCACAAGATT 58.997 47.619 0.00 0.00 36.96 2.40
39 40 0.099436 GTCATCGCCACAAGATTGCC 59.901 55.000 0.00 0.00 0.00 4.52
40 41 1.031571 TCATCGCCACAAGATTGCCC 61.032 55.000 0.00 0.00 0.00 5.36
74 87 0.394565 GCCCGAGCCACTCATCTTAT 59.605 55.000 0.00 0.00 0.00 1.73
80 93 4.202202 CCGAGCCACTCATCTTATCTCTTT 60.202 45.833 0.00 0.00 0.00 2.52
82 95 4.942852 AGCCACTCATCTTATCTCTTTCG 58.057 43.478 0.00 0.00 0.00 3.46
83 96 4.404073 AGCCACTCATCTTATCTCTTTCGT 59.596 41.667 0.00 0.00 0.00 3.85
84 97 4.505922 GCCACTCATCTTATCTCTTTCGTG 59.494 45.833 0.00 0.00 0.00 4.35
91 104 8.833231 TCATCTTATCTCTTTCGTGAAAAACT 57.167 30.769 0.00 0.00 0.00 2.66
99 112 5.395642 TCTTTCGTGAAAAACTTGTGTTCC 58.604 37.500 0.00 0.00 34.96 3.62
102 115 2.729467 CGTGAAAAACTTGTGTTCCGCA 60.729 45.455 0.00 0.00 34.96 5.69
103 116 2.851824 GTGAAAAACTTGTGTTCCGCAG 59.148 45.455 0.00 0.00 34.96 5.18
104 117 2.750166 TGAAAAACTTGTGTTCCGCAGA 59.250 40.909 0.00 0.00 34.96 4.26
106 119 0.655733 AAACTTGTGTTCCGCAGACG 59.344 50.000 0.00 0.00 34.96 4.18
131 144 2.395766 ACCCTAAAATCCTTCCCCCT 57.604 50.000 0.00 0.00 0.00 4.79
190 203 0.180171 TGGCGATTGGACATGGTAGG 59.820 55.000 0.00 0.00 0.00 3.18
237 250 0.962356 GTGACAAGCACCATGGGGAG 60.962 60.000 21.28 9.24 41.78 4.30
250 263 4.384720 GGGAGGAGAGAGAACCCC 57.615 66.667 0.00 0.00 35.00 4.95
251 264 1.392534 GGGAGGAGAGAGAACCCCA 59.607 63.158 0.00 0.00 35.00 4.96
253 266 1.626631 GGGAGGAGAGAGAACCCCAAT 60.627 57.143 0.00 0.00 35.00 3.16
273 286 1.004745 TGAGAGGGGAGTTTCAATGCC 59.995 52.381 0.00 0.00 0.00 4.40
280 293 0.109597 GAGTTTCAATGCCGTGCAGG 60.110 55.000 0.00 0.00 43.65 4.85
290 303 3.127533 CGTGCAGGTGCTTAGGCC 61.128 66.667 0.00 0.00 42.66 5.19
317 330 7.634671 ATTGACACATGCAAGAGATTATCAA 57.365 32.000 0.00 0.00 0.00 2.57
318 331 6.673154 TGACACATGCAAGAGATTATCAAG 57.327 37.500 0.00 0.00 0.00 3.02
342 355 3.864686 CCGAAGCACCGATTGGCG 61.865 66.667 0.00 0.00 39.70 5.69
386 737 1.956477 ACATGGTCAAAGTGAAGCACC 59.044 47.619 0.00 0.00 34.49 5.01
388 739 0.817634 TGGTCAAAGTGAAGCACCGG 60.818 55.000 0.00 0.00 34.49 5.28
438 789 3.706802 AACATCGTGCATGTCACAAAA 57.293 38.095 16.80 5.66 45.77 2.44
439 790 3.272439 ACATCGTGCATGTCACAAAAG 57.728 42.857 16.80 8.37 42.62 2.27
440 791 2.877786 ACATCGTGCATGTCACAAAAGA 59.122 40.909 16.80 8.65 42.62 2.52
441 792 3.058708 ACATCGTGCATGTCACAAAAGAG 60.059 43.478 16.80 3.79 42.62 2.85
443 794 2.287644 TCGTGCATGTCACAAAAGAGTG 59.712 45.455 16.80 0.00 45.92 3.51
444 795 2.032054 CGTGCATGTCACAAAAGAGTGT 59.968 45.455 16.80 0.00 45.92 3.55
446 797 3.313526 GTGCATGTCACAAAAGAGTGTCT 59.686 43.478 13.27 0.00 44.98 3.41
448 799 4.035558 TGCATGTCACAAAAGAGTGTCTTC 59.964 41.667 0.00 0.00 35.27 2.87
449 800 4.035558 GCATGTCACAAAAGAGTGTCTTCA 59.964 41.667 0.00 0.00 35.27 3.02
578 951 4.885270 CAACCACCACCACGGGCA 62.885 66.667 0.00 0.00 40.22 5.36
607 989 2.110213 AAGGCCGAGTGCGAAACA 59.890 55.556 0.00 0.00 42.61 2.83
658 1045 2.031120 CAAAACTCACAAGGGAGCCAA 58.969 47.619 0.00 0.00 38.50 4.52
663 1050 1.975407 CACAAGGGAGCCAAGCCAG 60.975 63.158 0.00 0.00 0.00 4.85
856 1243 1.222936 CCCATTTCAGAGCTCGCCT 59.777 57.895 8.37 0.00 0.00 5.52
920 1307 1.494721 ACCCATCTCGCCCATAAATGT 59.505 47.619 0.00 0.00 0.00 2.71
965 1352 2.892425 CGCATCCTCCGCCTTCAC 60.892 66.667 0.00 0.00 0.00 3.18
966 1353 2.514824 GCATCCTCCGCCTTCACC 60.515 66.667 0.00 0.00 0.00 4.02
967 1354 3.036429 GCATCCTCCGCCTTCACCT 62.036 63.158 0.00 0.00 0.00 4.00
1210 1597 0.394352 GGAATTCATGGCCACGTCCT 60.394 55.000 8.16 0.00 0.00 3.85
1213 1600 1.204146 ATTCATGGCCACGTCCTACT 58.796 50.000 8.16 0.00 0.00 2.57
1217 1604 1.192146 ATGGCCACGTCCTACTGTGT 61.192 55.000 8.16 0.00 34.28 3.72
1219 1606 1.366366 GCCACGTCCTACTGTGTGT 59.634 57.895 0.00 0.00 34.28 3.72
1220 1607 0.599558 GCCACGTCCTACTGTGTGTA 59.400 55.000 0.00 0.00 34.28 2.90
1221 1608 1.402456 GCCACGTCCTACTGTGTGTAG 60.402 57.143 0.00 0.00 46.15 2.74
1256 1643 4.445879 CCTCCGTATATATGGGATCTCCGA 60.446 50.000 19.02 0.00 38.76 4.55
1444 1853 1.865248 GCCCGATTGCCGATTTGATTG 60.865 52.381 0.00 0.00 41.76 2.67
1480 1889 2.119495 TCTAGGGGATCTTTGCAGGTC 58.881 52.381 0.00 0.00 0.00 3.85
1511 1920 2.293677 TCCACGATCAGATTTCACCG 57.706 50.000 0.00 0.00 0.00 4.94
1552 1961 4.637534 GTGCTTAGGTGTGAATGTGATCAT 59.362 41.667 0.00 0.00 35.59 2.45
1593 2006 1.341852 TGTTGTCGTTAGTGCTAGGCA 59.658 47.619 0.00 0.00 35.60 4.75
1613 2026 3.816480 GCAACAGGTTATGGTAAGGGGTT 60.816 47.826 0.00 0.00 0.00 4.11
1663 2076 0.736325 GTCGATGGTCCGTTCACTGG 60.736 60.000 0.00 0.00 0.00 4.00
1664 2077 1.183030 TCGATGGTCCGTTCACTGGT 61.183 55.000 0.00 0.00 0.00 4.00
1665 2078 0.528924 CGATGGTCCGTTCACTGGTA 59.471 55.000 0.00 0.00 0.00 3.25
1666 2079 1.734707 CGATGGTCCGTTCACTGGTAC 60.735 57.143 0.00 0.00 0.00 3.34
1683 2096 3.136809 TGGTACTAGTTTTGGCCAGTCAA 59.863 43.478 5.11 0.00 0.00 3.18
1914 2371 1.270465 CCTGACTGTGTGCATCACTCA 60.270 52.381 16.70 12.78 46.27 3.41
1922 2379 3.222053 TGCATCACTCAGTGCAGAC 57.778 52.632 0.00 0.00 45.60 3.51
1995 2460 7.544217 TGCGTGGTTATATATATTACAGCAGTG 59.456 37.037 17.16 8.87 0.00 3.66
2452 2922 8.302965 ACTTCTTTTGAGCTTAATGCAATTTC 57.697 30.769 0.00 0.00 45.94 2.17
2495 2965 6.980593 TCATGTTTGATTTGGACTTTGTAGG 58.019 36.000 0.00 0.00 0.00 3.18
2532 3002 9.944376 TTATACTCAAAATAAGTGTCTTGAGCT 57.056 29.630 9.89 0.00 45.64 4.09
2533 3003 8.854614 ATACTCAAAATAAGTGTCTTGAGCTT 57.145 30.769 9.89 0.00 45.64 3.74
2534 3004 9.944376 ATACTCAAAATAAGTGTCTTGAGCTTA 57.056 29.630 9.89 0.00 45.64 3.09
2535 3005 8.316640 ACTCAAAATAAGTGTCTTGAGCTTAG 57.683 34.615 9.89 0.00 45.64 2.18
2536 3006 7.934120 ACTCAAAATAAGTGTCTTGAGCTTAGT 59.066 33.333 9.89 0.00 45.64 2.24
2537 3007 9.424319 CTCAAAATAAGTGTCTTGAGCTTAGTA 57.576 33.333 0.00 0.00 38.63 1.82
2538 3008 9.204570 TCAAAATAAGTGTCTTGAGCTTAGTAC 57.795 33.333 0.00 0.00 0.00 2.73
2539 3009 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
2540 3010 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
2541 3011 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
2542 3012 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
2543 3013 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
2544 3014 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
2545 3015 9.555727 AAGTGTCTTGAGCTTAGTACAAATTTA 57.444 29.630 0.00 0.00 0.00 1.40
2546 3016 9.726438 AGTGTCTTGAGCTTAGTACAAATTTAT 57.274 29.630 0.00 0.00 0.00 1.40
2572 3042 7.723324 ACTAGAGCTAGTACAAAGTTGAAACA 58.277 34.615 8.35 0.00 43.98 2.83
2573 3043 6.846325 AGAGCTAGTACAAAGTTGAAACAC 57.154 37.500 0.00 0.00 0.00 3.32
2574 3044 6.583562 AGAGCTAGTACAAAGTTGAAACACT 58.416 36.000 0.00 0.00 0.00 3.55
2575 3045 7.048512 AGAGCTAGTACAAAGTTGAAACACTT 58.951 34.615 0.00 0.00 38.74 3.16
2576 3046 8.202137 AGAGCTAGTACAAAGTTGAAACACTTA 58.798 33.333 0.00 0.00 35.87 2.24
2577 3047 8.904099 AGCTAGTACAAAGTTGAAACACTTAT 57.096 30.769 0.00 0.00 35.87 1.73
2578 3048 9.338622 AGCTAGTACAAAGTTGAAACACTTATT 57.661 29.630 0.00 0.00 35.87 1.40
2579 3049 9.946165 GCTAGTACAAAGTTGAAACACTTATTT 57.054 29.630 0.00 0.00 35.87 1.40
2582 3052 9.581099 AGTACAAAGTTGAAACACTTATTTTGG 57.419 29.630 0.00 0.00 35.87 3.28
2583 3053 7.841915 ACAAAGTTGAAACACTTATTTTGGG 57.158 32.000 0.00 0.00 35.87 4.12
2584 3054 7.616313 ACAAAGTTGAAACACTTATTTTGGGA 58.384 30.769 0.00 0.00 35.87 4.37
2585 3055 7.547722 ACAAAGTTGAAACACTTATTTTGGGAC 59.452 33.333 0.00 0.00 35.87 4.46
2586 3056 5.827666 AGTTGAAACACTTATTTTGGGACG 58.172 37.500 0.00 0.00 0.00 4.79
2587 3057 4.839668 TGAAACACTTATTTTGGGACGG 57.160 40.909 0.00 0.00 0.00 4.79
2588 3058 4.462133 TGAAACACTTATTTTGGGACGGA 58.538 39.130 0.00 0.00 0.00 4.69
2589 3059 4.517453 TGAAACACTTATTTTGGGACGGAG 59.483 41.667 0.00 0.00 0.00 4.63
2590 3060 3.067684 ACACTTATTTTGGGACGGAGG 57.932 47.619 0.00 0.00 0.00 4.30
2591 3061 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2592 3062 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2593 3063 2.850568 ACTTATTTTGGGACGGAGGGAT 59.149 45.455 0.00 0.00 0.00 3.85
2594 3064 3.268595 ACTTATTTTGGGACGGAGGGATT 59.731 43.478 0.00 0.00 0.00 3.01
2595 3065 4.475747 ACTTATTTTGGGACGGAGGGATTA 59.524 41.667 0.00 0.00 0.00 1.75
2659 3129 3.498777 GCTGTTTAAGAGGCGAGAAACTT 59.501 43.478 0.00 0.00 33.81 2.66
2728 3201 5.935789 TGTAAGAGGGCATTTGTAGTACAAC 59.064 40.000 15.31 4.55 37.90 3.32
2833 3312 9.081997 CAATTTGCAGCTATTTATTTTCCGTTA 57.918 29.630 0.00 0.00 0.00 3.18
3280 3761 6.222038 TCTCTAACTGTTGACACTTGTCTT 57.778 37.500 10.63 0.00 44.99 3.01
3303 3784 3.309682 CGACACTCTTTGCACAGAAAGAA 59.690 43.478 3.79 0.00 40.59 2.52
3487 3968 7.771361 TGATCTTTGTTGTACCTCACTTTTACA 59.229 33.333 0.00 0.00 0.00 2.41
3523 4004 9.757227 ATAAAATTGACGAAATTCCTGTGAAAA 57.243 25.926 0.00 0.00 37.51 2.29
3762 4814 0.311165 CTCCGTACAGATACTGGCCG 59.689 60.000 0.00 0.00 35.51 6.13
3871 4923 6.715264 TCAAGTTCTTACATTTTTCTCCCTCC 59.285 38.462 0.00 0.00 0.00 4.30
4020 5072 0.882484 TCATTTTGGCACGCAGTCGA 60.882 50.000 0.00 0.00 41.61 4.20
4413 5465 3.897141 TTCTTTGTTTCCCAACCCAAC 57.103 42.857 0.00 0.00 31.20 3.77
4435 5487 1.129917 CTGGGCCTCTGATGTGAGAT 58.870 55.000 4.53 0.00 36.23 2.75
4458 5510 3.003480 CAGTAAAACTGCTGGCTCCTAC 58.997 50.000 0.00 0.00 39.62 3.18
4470 5522 2.249139 GGCTCCTACCATACTACCCTG 58.751 57.143 0.00 0.00 0.00 4.45
4585 5637 6.058833 TGTTGCTTATGTGTAGAAGGTTTCA 58.941 36.000 0.00 0.00 0.00 2.69
4677 5730 5.230726 GTGTTGTTCTGACATTTTCAAGCTG 59.769 40.000 0.00 0.00 35.29 4.24
4735 5789 3.443681 TGCATTTTTAGCTAGGTTGCCTC 59.556 43.478 11.82 0.00 34.61 4.70
4827 5881 1.672881 AGCGGCTGTGCTTGATATTTC 59.327 47.619 0.00 0.00 44.46 2.17
4836 5890 5.221880 TGTGCTTGATATTTCTGTTTGCAC 58.778 37.500 0.00 0.00 45.53 4.57
4837 5891 5.009911 TGTGCTTGATATTTCTGTTTGCACT 59.990 36.000 13.90 0.00 45.53 4.40
4838 5892 5.922544 GTGCTTGATATTTCTGTTTGCACTT 59.077 36.000 0.00 0.00 43.08 3.16
4839 5893 6.421801 GTGCTTGATATTTCTGTTTGCACTTT 59.578 34.615 0.00 0.00 43.08 2.66
4840 5894 6.642131 TGCTTGATATTTCTGTTTGCACTTTC 59.358 34.615 0.00 0.00 0.00 2.62
4841 5895 6.865205 GCTTGATATTTCTGTTTGCACTTTCT 59.135 34.615 0.00 0.00 0.00 2.52
4842 5896 7.148853 GCTTGATATTTCTGTTTGCACTTTCTG 60.149 37.037 0.00 0.00 0.00 3.02
4843 5897 7.275888 TGATATTTCTGTTTGCACTTTCTGT 57.724 32.000 0.00 0.00 0.00 3.41
4844 5898 7.715657 TGATATTTCTGTTTGCACTTTCTGTT 58.284 30.769 0.00 0.00 0.00 3.16
4845 5899 8.196771 TGATATTTCTGTTTGCACTTTCTGTTT 58.803 29.630 0.00 0.00 0.00 2.83
4846 5900 6.651755 ATTTCTGTTTGCACTTTCTGTTTG 57.348 33.333 0.00 0.00 0.00 2.93
4847 5901 3.510719 TCTGTTTGCACTTTCTGTTTGC 58.489 40.909 0.00 0.00 36.76 3.68
4848 5902 3.056962 TCTGTTTGCACTTTCTGTTTGCA 60.057 39.130 0.00 0.00 44.40 4.08
4849 5903 2.992543 TGTTTGCACTTTCTGTTTGCAC 59.007 40.909 0.00 0.00 45.70 4.57
4867 5921 3.000041 GCACGTGATCCTTTGTCACATA 59.000 45.455 22.23 0.00 44.77 2.29
4877 5931 1.803334 TTGTCACATACGGACTTGCC 58.197 50.000 0.00 0.00 36.26 4.52
4882 5936 3.006940 TCACATACGGACTTGCCATTTC 58.993 45.455 0.00 0.00 35.94 2.17
4883 5937 3.009723 CACATACGGACTTGCCATTTCT 58.990 45.455 0.00 0.00 35.94 2.52
4884 5938 3.063997 CACATACGGACTTGCCATTTCTC 59.936 47.826 0.00 0.00 35.94 2.87
4885 5939 2.396590 TACGGACTTGCCATTTCTCC 57.603 50.000 0.00 0.00 35.94 3.71
4886 5940 0.322546 ACGGACTTGCCATTTCTCCC 60.323 55.000 0.00 0.00 35.94 4.30
4887 5941 0.322456 CGGACTTGCCATTTCTCCCA 60.322 55.000 0.00 0.00 35.94 4.37
4889 5943 2.421388 CGGACTTGCCATTTCTCCCATA 60.421 50.000 0.00 0.00 35.94 2.74
4895 5949 7.669722 GGACTTGCCATTTCTCCCATAATATAA 59.330 37.037 0.00 0.00 36.34 0.98
4896 5950 8.641498 ACTTGCCATTTCTCCCATAATATAAG 57.359 34.615 0.00 0.00 0.00 1.73
4897 5951 8.448008 ACTTGCCATTTCTCCCATAATATAAGA 58.552 33.333 0.00 0.00 0.00 2.10
4898 5952 9.300681 CTTGCCATTTCTCCCATAATATAAGAA 57.699 33.333 0.00 0.00 0.00 2.52
4900 5954 7.390440 TGCCATTTCTCCCATAATATAAGAACG 59.610 37.037 0.00 0.00 0.00 3.95
4901 5955 7.390718 GCCATTTCTCCCATAATATAAGAACGT 59.609 37.037 0.00 0.00 0.00 3.99
4902 5956 9.938280 CCATTTCTCCCATAATATAAGAACGTA 57.062 33.333 0.00 0.00 0.00 3.57
4938 6032 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4944 6038 5.657446 TCTTATATTATGGGACGGAGGGAA 58.343 41.667 0.00 0.00 0.00 3.97
4947 6041 8.071854 TCTTATATTATGGGACGGAGGGAATAT 58.928 37.037 0.00 0.00 0.00 1.28
4960 6054 6.062095 CGGAGGGAATATGTAAGTGGAAAAT 58.938 40.000 0.00 0.00 0.00 1.82
4999 6093 4.941873 AGTTTCTGTCAACTCTTTTCGGTT 59.058 37.500 0.00 0.00 30.76 4.44
5017 6111 0.741915 TTGACCGGTTGCTTGGTTTC 59.258 50.000 9.42 0.00 38.99 2.78
5022 6116 1.455383 CGGTTGCTTGGTTTCCTGCT 61.455 55.000 0.00 0.00 0.00 4.24
5029 6123 3.084786 GCTTGGTTTCCTGCTTGACTAT 58.915 45.455 0.00 0.00 0.00 2.12
5039 6133 8.613482 GTTTCCTGCTTGACTATTTATTACTCC 58.387 37.037 0.00 0.00 0.00 3.85
5060 6154 8.030913 ACTCCCTCCGTTCACTATTATAAATT 57.969 34.615 0.00 0.00 0.00 1.82
5062 6156 7.798071 TCCCTCCGTTCACTATTATAAATTGT 58.202 34.615 0.00 0.00 0.00 2.71
5063 6157 8.926374 TCCCTCCGTTCACTATTATAAATTGTA 58.074 33.333 0.00 0.00 0.00 2.41
5064 6158 8.985805 CCCTCCGTTCACTATTATAAATTGTAC 58.014 37.037 0.00 0.00 0.00 2.90
5065 6159 8.697067 CCTCCGTTCACTATTATAAATTGTACG 58.303 37.037 12.52 12.52 32.68 3.67
5066 6160 9.241317 CTCCGTTCACTATTATAAATTGTACGT 57.759 33.333 15.64 0.00 31.45 3.57
5137 6453 7.985476 ACGGAACATCTTATAAAAGTGAATGG 58.015 34.615 0.00 0.00 34.13 3.16
5141 6457 8.525290 AACATCTTATAAAAGTGAATGGAGGG 57.475 34.615 0.00 0.00 34.13 4.30
5142 6458 7.062957 ACATCTTATAAAAGTGAATGGAGGGG 58.937 38.462 0.00 0.00 34.13 4.79
5144 6460 5.494706 TCTTATAAAAGTGAATGGAGGGGGT 59.505 40.000 0.00 0.00 34.13 4.95
5149 6465 3.502051 AGTGAATGGAGGGGGTACTTA 57.498 47.619 0.00 0.00 0.00 2.24
5150 6466 3.810623 AGTGAATGGAGGGGGTACTTAA 58.189 45.455 0.00 0.00 0.00 1.85
5151 6467 3.780850 AGTGAATGGAGGGGGTACTTAAG 59.219 47.826 0.00 0.00 0.00 1.85
5152 6468 3.778629 GTGAATGGAGGGGGTACTTAAGA 59.221 47.826 10.09 0.00 0.00 2.10
5153 6469 4.226620 GTGAATGGAGGGGGTACTTAAGAA 59.773 45.833 10.09 0.00 0.00 2.52
5185 6511 0.744874 CTTCGCGGACCTATGGAAGA 59.255 55.000 6.13 0.00 36.99 2.87
5191 6517 2.288886 GCGGACCTATGGAAGATGTACC 60.289 54.545 0.00 0.00 0.00 3.34
5195 6521 5.396436 CGGACCTATGGAAGATGTACCTTTT 60.396 44.000 0.00 0.00 0.00 2.27
5223 6554 6.801718 TCTTTTATAGAGGAATCAACGGGA 57.198 37.500 0.00 0.00 0.00 5.14
5247 6578 8.309163 GAGAGAATTCTCCTATATTTGTGCTG 57.691 38.462 28.01 0.00 43.38 4.41
5248 6579 6.709846 AGAGAATTCTCCTATATTTGTGCTGC 59.290 38.462 28.01 1.73 43.88 5.25
5249 6580 6.599445 AGAATTCTCCTATATTTGTGCTGCT 58.401 36.000 0.88 0.00 0.00 4.24
5250 6581 6.709846 AGAATTCTCCTATATTTGTGCTGCTC 59.290 38.462 0.88 0.00 0.00 4.26
5251 6582 3.982475 TCTCCTATATTTGTGCTGCTCG 58.018 45.455 0.00 0.00 0.00 5.03
5252 6583 3.062763 CTCCTATATTTGTGCTGCTCGG 58.937 50.000 0.00 0.00 0.00 4.63
5253 6584 2.434336 TCCTATATTTGTGCTGCTCGGT 59.566 45.455 0.00 0.00 0.00 4.69
5282 6613 5.537295 GGATTGGTAACTGGTTTGTTAAGGT 59.463 40.000 0.00 0.00 34.67 3.50
5283 6614 6.716173 GGATTGGTAACTGGTTTGTTAAGGTA 59.284 38.462 0.00 0.00 34.67 3.08
5284 6615 6.940831 TTGGTAACTGGTTTGTTAAGGTAC 57.059 37.500 0.00 0.00 34.67 3.34
5285 6616 5.055812 TGGTAACTGGTTTGTTAAGGTACG 58.944 41.667 0.00 0.00 35.38 3.67
5286 6617 4.083855 GGTAACTGGTTTGTTAAGGTACGC 60.084 45.833 0.00 0.00 35.38 4.42
5287 6618 3.196939 ACTGGTTTGTTAAGGTACGCA 57.803 42.857 0.00 0.00 0.00 5.24
5288 6619 2.874086 ACTGGTTTGTTAAGGTACGCAC 59.126 45.455 0.00 0.00 0.00 5.34
5289 6620 2.220313 TGGTTTGTTAAGGTACGCACC 58.780 47.619 0.00 0.00 46.19 5.01
5301 6632 4.499037 GGTACGCACCTCTTTTTCAATT 57.501 40.909 0.00 0.00 42.11 2.32
5302 6633 5.616488 GGTACGCACCTCTTTTTCAATTA 57.384 39.130 0.00 0.00 42.11 1.40
5303 6634 6.190954 GGTACGCACCTCTTTTTCAATTAT 57.809 37.500 0.00 0.00 42.11 1.28
5304 6635 7.311364 GGTACGCACCTCTTTTTCAATTATA 57.689 36.000 0.00 0.00 42.11 0.98
5305 6636 7.407337 GGTACGCACCTCTTTTTCAATTATAG 58.593 38.462 0.00 0.00 42.11 1.31
5306 6637 6.436843 ACGCACCTCTTTTTCAATTATAGG 57.563 37.500 0.00 0.00 0.00 2.57
5307 6638 6.177610 ACGCACCTCTTTTTCAATTATAGGA 58.822 36.000 0.00 0.00 0.00 2.94
5308 6639 6.657541 ACGCACCTCTTTTTCAATTATAGGAA 59.342 34.615 0.00 0.00 0.00 3.36
5309 6640 7.339466 ACGCACCTCTTTTTCAATTATAGGAAT 59.661 33.333 0.00 0.00 0.00 3.01
5310 6641 7.857885 CGCACCTCTTTTTCAATTATAGGAATC 59.142 37.037 0.00 0.00 0.00 2.52
5311 6642 8.686334 GCACCTCTTTTTCAATTATAGGAATCA 58.314 33.333 0.00 0.00 0.00 2.57
5314 6645 9.722056 CCTCTTTTTCAATTATAGGAATCAACG 57.278 33.333 0.00 0.00 0.00 4.10
5315 6646 9.722056 CTCTTTTTCAATTATAGGAATCAACGG 57.278 33.333 0.00 0.00 0.00 4.44
5316 6647 8.682710 TCTTTTTCAATTATAGGAATCAACGGG 58.317 33.333 0.00 0.00 0.00 5.28
5317 6648 6.952773 TTTCAATTATAGGAATCAACGGGG 57.047 37.500 0.00 0.00 0.00 5.73
5318 6649 4.980573 TCAATTATAGGAATCAACGGGGG 58.019 43.478 0.00 0.00 0.00 5.40
5319 6650 4.414182 TCAATTATAGGAATCAACGGGGGT 59.586 41.667 0.00 0.00 0.00 4.95
5320 6651 3.849563 TTATAGGAATCAACGGGGGTG 57.150 47.619 0.00 0.00 0.00 4.61
5321 6652 0.843984 ATAGGAATCAACGGGGGTGG 59.156 55.000 0.00 0.00 0.00 4.61
5322 6653 0.252789 TAGGAATCAACGGGGGTGGA 60.253 55.000 0.00 0.00 0.00 4.02
5323 6654 1.137594 AGGAATCAACGGGGGTGGAA 61.138 55.000 0.00 0.00 0.00 3.53
5324 6655 0.033503 GGAATCAACGGGGGTGGAAT 60.034 55.000 0.00 0.00 0.00 3.01
5325 6656 1.618616 GGAATCAACGGGGGTGGAATT 60.619 52.381 0.00 0.00 0.00 2.17
5326 6657 1.749063 GAATCAACGGGGGTGGAATTC 59.251 52.381 0.00 0.00 0.00 2.17
5327 6658 0.999712 ATCAACGGGGGTGGAATTCT 59.000 50.000 5.23 0.00 0.00 2.40
5328 6659 0.326927 TCAACGGGGGTGGAATTCTC 59.673 55.000 5.23 0.00 0.00 2.87
5329 6660 0.679960 CAACGGGGGTGGAATTCTCC 60.680 60.000 5.23 8.34 42.81 3.71
5330 6661 1.859841 AACGGGGGTGGAATTCTCCC 61.860 60.000 22.32 22.32 41.64 4.30
5331 6662 2.001269 CGGGGGTGGAATTCTCCCT 61.001 63.158 26.23 0.00 41.64 4.20
5332 6663 1.923586 GGGGGTGGAATTCTCCCTC 59.076 63.158 26.23 22.59 41.64 4.30
5333 6664 0.624795 GGGGGTGGAATTCTCCCTCT 60.625 60.000 26.23 0.00 41.64 3.69
5334 6665 0.548510 GGGGTGGAATTCTCCCTCTG 59.451 60.000 26.23 0.00 41.64 3.35
5335 6666 1.290134 GGGTGGAATTCTCCCTCTGT 58.710 55.000 22.80 0.00 41.64 3.41
5336 6667 1.636003 GGGTGGAATTCTCCCTCTGTT 59.364 52.381 22.80 0.00 41.64 3.16
5337 6668 2.619074 GGGTGGAATTCTCCCTCTGTTG 60.619 54.545 22.80 0.00 41.64 3.33
5338 6669 2.305927 GGTGGAATTCTCCCTCTGTTGA 59.694 50.000 5.23 0.00 41.64 3.18
5339 6670 3.604582 GTGGAATTCTCCCTCTGTTGAG 58.395 50.000 5.23 0.00 41.64 3.02
5340 6671 2.026822 TGGAATTCTCCCTCTGTTGAGC 60.027 50.000 5.23 0.00 41.64 4.26
5341 6672 2.238395 GGAATTCTCCCTCTGTTGAGCT 59.762 50.000 5.23 0.00 38.93 4.09
5342 6673 3.308046 GGAATTCTCCCTCTGTTGAGCTT 60.308 47.826 5.23 0.00 38.93 3.74
5343 6674 4.331108 GAATTCTCCCTCTGTTGAGCTTT 58.669 43.478 0.00 0.00 38.93 3.51
5344 6675 3.864789 TTCTCCCTCTGTTGAGCTTTT 57.135 42.857 0.00 0.00 38.93 2.27
5345 6676 4.974645 TTCTCCCTCTGTTGAGCTTTTA 57.025 40.909 0.00 0.00 38.93 1.52
5346 6677 4.273148 TCTCCCTCTGTTGAGCTTTTAC 57.727 45.455 0.00 0.00 38.93 2.01
5347 6678 3.904339 TCTCCCTCTGTTGAGCTTTTACT 59.096 43.478 0.00 0.00 38.93 2.24
5348 6679 4.348168 TCTCCCTCTGTTGAGCTTTTACTT 59.652 41.667 0.00 0.00 38.93 2.24
5349 6680 4.642429 TCCCTCTGTTGAGCTTTTACTTC 58.358 43.478 0.00 0.00 38.93 3.01
5350 6681 4.348168 TCCCTCTGTTGAGCTTTTACTTCT 59.652 41.667 0.00 0.00 38.93 2.85
5351 6682 5.066593 CCCTCTGTTGAGCTTTTACTTCTT 58.933 41.667 0.00 0.00 38.93 2.52
5352 6683 6.042781 TCCCTCTGTTGAGCTTTTACTTCTTA 59.957 38.462 0.00 0.00 38.93 2.10
5353 6684 6.147985 CCCTCTGTTGAGCTTTTACTTCTTAC 59.852 42.308 0.00 0.00 38.93 2.34
5354 6685 6.931840 CCTCTGTTGAGCTTTTACTTCTTACT 59.068 38.462 0.00 0.00 38.93 2.24
5355 6686 8.088981 CCTCTGTTGAGCTTTTACTTCTTACTA 58.911 37.037 0.00 0.00 38.93 1.82
5356 6687 9.134734 CTCTGTTGAGCTTTTACTTCTTACTAG 57.865 37.037 0.00 0.00 33.12 2.57
5357 6688 7.599245 TCTGTTGAGCTTTTACTTCTTACTAGC 59.401 37.037 0.00 0.00 0.00 3.42
5358 6689 7.214381 TGTTGAGCTTTTACTTCTTACTAGCA 58.786 34.615 0.00 0.00 0.00 3.49
5359 6690 7.713507 TGTTGAGCTTTTACTTCTTACTAGCAA 59.286 33.333 0.00 0.00 0.00 3.91
5360 6691 8.557029 GTTGAGCTTTTACTTCTTACTAGCAAA 58.443 33.333 0.00 0.00 0.00 3.68
5361 6692 8.671384 TGAGCTTTTACTTCTTACTAGCAAAA 57.329 30.769 0.00 0.00 0.00 2.44
5362 6693 8.774586 TGAGCTTTTACTTCTTACTAGCAAAAG 58.225 33.333 0.00 0.00 35.59 2.27
5363 6694 8.904099 AGCTTTTACTTCTTACTAGCAAAAGA 57.096 30.769 10.81 0.00 34.84 2.52
5364 6695 8.994170 AGCTTTTACTTCTTACTAGCAAAAGAG 58.006 33.333 10.81 0.00 34.84 2.85
5365 6696 7.746916 GCTTTTACTTCTTACTAGCAAAAGAGC 59.253 37.037 10.81 0.00 34.84 4.09
5366 6697 7.668525 TTTACTTCTTACTAGCAAAAGAGCC 57.331 36.000 0.00 0.00 33.49 4.70
5367 6698 4.580868 ACTTCTTACTAGCAAAAGAGCCC 58.419 43.478 0.00 0.00 33.49 5.19
5368 6699 3.247006 TCTTACTAGCAAAAGAGCCCG 57.753 47.619 0.00 0.00 34.23 6.13
5369 6700 2.565834 TCTTACTAGCAAAAGAGCCCGT 59.434 45.455 0.00 0.00 34.23 5.28
5370 6701 2.380084 TACTAGCAAAAGAGCCCGTG 57.620 50.000 0.00 0.00 34.23 4.94
5371 6702 0.955919 ACTAGCAAAAGAGCCCGTGC 60.956 55.000 0.00 0.00 37.26 5.34
5372 6703 0.955428 CTAGCAAAAGAGCCCGTGCA 60.955 55.000 0.00 0.00 41.13 4.57
5373 6704 0.322456 TAGCAAAAGAGCCCGTGCAT 60.322 50.000 0.00 0.00 41.13 3.96
5374 6705 1.181098 AGCAAAAGAGCCCGTGCATT 61.181 50.000 0.00 0.00 41.13 3.56
5375 6706 1.010419 GCAAAAGAGCCCGTGCATTG 61.010 55.000 0.00 0.00 41.13 2.82
5376 6707 1.010419 CAAAAGAGCCCGTGCATTGC 61.010 55.000 0.46 0.46 41.13 3.56
5377 6708 1.462731 AAAAGAGCCCGTGCATTGCA 61.463 50.000 7.38 7.38 41.13 4.08
5378 6709 1.462731 AAAGAGCCCGTGCATTGCAA 61.463 50.000 13.94 0.00 41.47 4.08
5379 6710 2.126346 GAGCCCGTGCATTGCAAC 60.126 61.111 13.94 7.00 41.47 4.17
5380 6711 3.951655 GAGCCCGTGCATTGCAACG 62.952 63.158 13.94 17.64 41.47 4.10
5383 6714 3.361158 CCGTGCATTGCAACGGGA 61.361 61.111 29.18 5.00 43.66 5.14
5384 6715 2.176546 CGTGCATTGCAACGGGAG 59.823 61.111 13.94 0.00 41.47 4.30
5385 6716 2.324330 CGTGCATTGCAACGGGAGA 61.324 57.895 13.94 0.00 41.47 3.71
5386 6717 1.851021 CGTGCATTGCAACGGGAGAA 61.851 55.000 13.94 0.00 41.47 2.87
5387 6718 0.313672 GTGCATTGCAACGGGAGAAA 59.686 50.000 13.94 0.00 41.47 2.52
5388 6719 1.035923 TGCATTGCAACGGGAGAAAA 58.964 45.000 9.33 0.00 34.76 2.29
5389 6720 1.000385 TGCATTGCAACGGGAGAAAAG 60.000 47.619 9.33 0.00 34.76 2.27
5390 6721 1.269448 GCATTGCAACGGGAGAAAAGA 59.731 47.619 0.00 0.00 0.00 2.52
5391 6722 2.669391 GCATTGCAACGGGAGAAAAGAG 60.669 50.000 0.00 0.00 0.00 2.85
5392 6723 2.631160 TTGCAACGGGAGAAAAGAGA 57.369 45.000 0.00 0.00 0.00 3.10
5393 6724 2.859165 TGCAACGGGAGAAAAGAGAT 57.141 45.000 0.00 0.00 0.00 2.75
5394 6725 2.699954 TGCAACGGGAGAAAAGAGATC 58.300 47.619 0.00 0.00 0.00 2.75
5395 6726 2.038426 TGCAACGGGAGAAAAGAGATCA 59.962 45.455 0.00 0.00 0.00 2.92
5396 6727 3.274288 GCAACGGGAGAAAAGAGATCAT 58.726 45.455 0.00 0.00 0.00 2.45
5397 6728 4.081142 TGCAACGGGAGAAAAGAGATCATA 60.081 41.667 0.00 0.00 0.00 2.15
5398 6729 4.876107 GCAACGGGAGAAAAGAGATCATAA 59.124 41.667 0.00 0.00 0.00 1.90
5399 6730 5.529060 GCAACGGGAGAAAAGAGATCATAAT 59.471 40.000 0.00 0.00 0.00 1.28
5400 6731 6.293135 GCAACGGGAGAAAAGAGATCATAATC 60.293 42.308 0.00 0.00 0.00 1.75
5401 6732 6.739331 ACGGGAGAAAAGAGATCATAATCT 57.261 37.500 0.00 0.00 45.16 2.40
5402 6733 7.130681 ACGGGAGAAAAGAGATCATAATCTT 57.869 36.000 0.00 0.00 42.46 2.40
5403 6734 7.213678 ACGGGAGAAAAGAGATCATAATCTTC 58.786 38.462 0.00 0.00 42.46 2.87
5404 6735 7.147655 ACGGGAGAAAAGAGATCATAATCTTCA 60.148 37.037 0.00 0.00 42.46 3.02
5405 6736 7.712639 CGGGAGAAAAGAGATCATAATCTTCAA 59.287 37.037 0.00 0.00 42.46 2.69
5406 6737 9.571816 GGGAGAAAAGAGATCATAATCTTCAAT 57.428 33.333 0.00 0.00 42.46 2.57
5409 6740 8.848182 AGAAAAGAGATCATAATCTTCAATGGC 58.152 33.333 0.00 0.00 42.46 4.40
5410 6741 7.521871 AAAGAGATCATAATCTTCAATGGCC 57.478 36.000 0.00 0.00 42.46 5.36
5411 6742 6.196918 AGAGATCATAATCTTCAATGGCCA 57.803 37.500 8.56 8.56 42.46 5.36
5412 6743 6.791371 AGAGATCATAATCTTCAATGGCCAT 58.209 36.000 14.09 14.09 42.46 4.40
5413 6744 6.659668 AGAGATCATAATCTTCAATGGCCATG 59.340 38.462 21.63 13.71 42.46 3.66
5414 6745 6.549242 AGATCATAATCTTCAATGGCCATGA 58.451 36.000 21.63 15.91 39.27 3.07
5415 6746 7.182760 AGATCATAATCTTCAATGGCCATGAT 58.817 34.615 21.63 14.88 39.27 2.45
5416 6747 6.829229 TCATAATCTTCAATGGCCATGATC 57.171 37.500 21.63 0.00 0.00 2.92
5417 6748 6.308566 TCATAATCTTCAATGGCCATGATCA 58.691 36.000 21.63 3.82 0.00 2.92
5418 6749 6.951778 TCATAATCTTCAATGGCCATGATCAT 59.048 34.615 21.63 6.29 0.00 2.45
5419 6750 5.468540 AATCTTCAATGGCCATGATCATG 57.531 39.130 25.97 25.97 38.51 3.07
5420 6751 3.905968 TCTTCAATGGCCATGATCATGT 58.094 40.909 29.23 12.11 37.11 3.21
5421 6752 4.283337 TCTTCAATGGCCATGATCATGTT 58.717 39.130 29.23 16.86 37.11 2.71
5422 6753 4.712829 TCTTCAATGGCCATGATCATGTTT 59.287 37.500 29.23 16.42 37.11 2.83
5423 6754 5.188163 TCTTCAATGGCCATGATCATGTTTT 59.812 36.000 29.23 16.13 37.11 2.43
5424 6755 4.760878 TCAATGGCCATGATCATGTTTTG 58.239 39.130 29.23 23.92 37.11 2.44
5425 6756 2.676632 TGGCCATGATCATGTTTTGC 57.323 45.000 29.23 24.43 37.11 3.68
5426 6757 2.181125 TGGCCATGATCATGTTTTGCT 58.819 42.857 29.23 0.00 37.11 3.91
5427 6758 3.363627 TGGCCATGATCATGTTTTGCTA 58.636 40.909 29.23 21.23 37.11 3.49
5428 6759 3.130869 TGGCCATGATCATGTTTTGCTAC 59.869 43.478 29.23 15.80 37.11 3.58
5429 6760 3.130869 GGCCATGATCATGTTTTGCTACA 59.869 43.478 29.23 0.00 37.11 2.74
5430 6761 4.202182 GGCCATGATCATGTTTTGCTACAT 60.202 41.667 29.23 0.00 39.27 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.028020 ACGAAGGAGCTTGGACTTAAGG 60.028 50.000 7.53 0.00 0.00 2.69
1 2 3.254892 GACGAAGGAGCTTGGACTTAAG 58.745 50.000 0.00 0.00 0.00 1.85
2 3 2.631062 TGACGAAGGAGCTTGGACTTAA 59.369 45.455 0.00 0.00 0.00 1.85
3 4 2.244695 TGACGAAGGAGCTTGGACTTA 58.755 47.619 0.00 0.00 0.00 2.24
18 19 1.358877 CAATCTTGTGGCGATGACGA 58.641 50.000 0.00 0.00 42.66 4.20
20 21 0.099436 GGCAATCTTGTGGCGATGAC 59.901 55.000 0.00 0.00 34.03 3.06
50 63 4.154347 GAGTGGCTCGGGCTCAGG 62.154 72.222 7.48 0.00 38.73 3.86
55 68 0.394565 ATAAGATGAGTGGCTCGGGC 59.605 55.000 0.00 0.00 32.35 6.13
56 69 1.967066 AGATAAGATGAGTGGCTCGGG 59.033 52.381 0.00 0.00 32.35 5.14
61 74 4.505922 CACGAAAGAGATAAGATGAGTGGC 59.494 45.833 0.00 0.00 0.00 5.01
65 78 8.930760 AGTTTTTCACGAAAGAGATAAGATGAG 58.069 33.333 0.00 0.00 0.00 2.90
74 87 5.873179 ACACAAGTTTTTCACGAAAGAGA 57.127 34.783 0.00 0.00 0.00 3.10
80 93 2.476519 GCGGAACACAAGTTTTTCACGA 60.477 45.455 0.00 0.00 38.30 4.35
82 95 2.851824 CTGCGGAACACAAGTTTTTCAC 59.148 45.455 0.00 0.00 38.30 3.18
83 96 2.750166 TCTGCGGAACACAAGTTTTTCA 59.250 40.909 0.00 0.00 38.30 2.69
84 97 3.105937 GTCTGCGGAACACAAGTTTTTC 58.894 45.455 0.00 0.00 38.30 2.29
107 120 3.362706 GGGAAGGATTTTAGGGTTCACC 58.637 50.000 0.00 0.00 40.67 4.02
109 122 2.313643 GGGGGAAGGATTTTAGGGTTCA 59.686 50.000 0.00 0.00 0.00 3.18
124 137 2.150719 TTGAGCGGTCAAGGGGGAA 61.151 57.895 25.16 2.11 37.79 3.97
145 158 0.033228 GCCAGGATCTCTGATCCACG 59.967 60.000 23.49 15.55 46.18 4.94
228 241 1.127343 GTTCTCTCTCCTCCCCATGG 58.873 60.000 4.14 4.14 0.00 3.66
230 243 0.030603 GGGTTCTCTCTCCTCCCCAT 60.031 60.000 0.00 0.00 32.66 4.00
237 250 2.433970 CTCTCATTGGGGTTCTCTCTCC 59.566 54.545 0.00 0.00 0.00 3.71
250 263 3.129988 GCATTGAAACTCCCCTCTCATTG 59.870 47.826 0.00 0.00 0.00 2.82
251 264 3.359950 GCATTGAAACTCCCCTCTCATT 58.640 45.455 0.00 0.00 0.00 2.57
253 266 1.004745 GGCATTGAAACTCCCCTCTCA 59.995 52.381 0.00 0.00 0.00 3.27
273 286 3.127533 GGCCTAAGCACCTGCACG 61.128 66.667 0.00 0.00 45.16 5.34
280 293 2.295909 TGTGTCAATTTGGCCTAAGCAC 59.704 45.455 3.32 11.24 42.56 4.40
290 303 7.971722 TGATAATCTCTTGCATGTGTCAATTTG 59.028 33.333 0.00 0.00 0.00 2.32
317 330 4.035102 GGTGCTTCGGGCTTCCCT 62.035 66.667 0.00 0.00 42.67 4.20
342 355 2.729491 GCGTTGTTTGCTTCCGGC 60.729 61.111 0.00 0.00 42.22 6.13
402 753 4.394920 ACGATGTTAAATGCCCTGTACAAG 59.605 41.667 0.00 0.00 0.00 3.16
438 789 1.051812 CCTGTGGGTGAAGACACTCT 58.948 55.000 0.00 0.00 46.63 3.24
439 790 0.035458 CCCTGTGGGTGAAGACACTC 59.965 60.000 0.00 0.00 46.68 3.51
440 791 2.056906 GCCCTGTGGGTGAAGACACT 62.057 60.000 4.42 0.00 46.51 3.55
441 792 1.600916 GCCCTGTGGGTGAAGACAC 60.601 63.158 4.42 0.00 46.51 3.67
443 794 0.912486 ATAGCCCTGTGGGTGAAGAC 59.088 55.000 4.42 0.00 46.51 3.01
444 795 1.668826 AATAGCCCTGTGGGTGAAGA 58.331 50.000 4.42 0.00 46.51 2.87
446 797 2.524306 CAAAATAGCCCTGTGGGTGAA 58.476 47.619 4.42 0.00 46.51 3.18
448 799 1.185315 CCAAAATAGCCCTGTGGGTG 58.815 55.000 4.42 0.00 46.51 4.61
449 800 0.041090 CCCAAAATAGCCCTGTGGGT 59.959 55.000 4.42 0.00 46.51 4.51
466 835 4.452733 CGTGGAGGAGGTTCGCCC 62.453 72.222 0.00 0.00 38.27 6.13
595 968 1.200839 GTTCCGTGTTTCGCACTCG 59.799 57.895 0.00 3.03 45.57 4.18
607 989 2.203437 GCCTGGTTTGGGTTCCGT 60.203 61.111 0.00 0.00 0.00 4.69
950 1337 1.144936 GAGGTGAAGGCGGAGGATG 59.855 63.158 0.00 0.00 0.00 3.51
963 1350 1.075600 GGAGGAGGAGGAGGAGGTG 60.076 68.421 0.00 0.00 0.00 4.00
965 1352 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
966 1353 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
967 1354 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1053 1440 1.003573 GGAGGAGGAGGTGGTGGAT 59.996 63.158 0.00 0.00 0.00 3.41
1210 1597 1.695242 CAACCCCACCTACACACAGTA 59.305 52.381 0.00 0.00 0.00 2.74
1213 1600 1.349688 GATCAACCCCACCTACACACA 59.650 52.381 0.00 0.00 0.00 3.72
1217 1604 1.580059 GAGGATCAACCCCACCTACA 58.420 55.000 0.00 0.00 40.05 2.74
1219 1606 0.689745 CGGAGGATCAACCCCACCTA 60.690 60.000 0.00 0.00 40.05 3.08
1220 1607 1.995626 CGGAGGATCAACCCCACCT 60.996 63.158 0.00 0.00 40.05 4.00
1221 1608 0.979187 TACGGAGGATCAACCCCACC 60.979 60.000 0.00 0.00 40.05 4.61
1222 1609 1.129058 ATACGGAGGATCAACCCCAC 58.871 55.000 0.00 0.00 40.05 4.61
1223 1610 2.779429 TATACGGAGGATCAACCCCA 57.221 50.000 0.00 0.00 40.05 4.96
1225 1612 4.101119 CCCATATATACGGAGGATCAACCC 59.899 50.000 0.00 0.00 40.05 4.11
1480 1889 6.486253 TCTGATCGTGGAATTCAAAAGAAG 57.514 37.500 7.93 0.00 0.00 2.85
1511 1920 1.138247 CACACCCGTACGCTAGGTC 59.862 63.158 10.49 0.00 0.00 3.85
1593 2006 6.411675 AATAACCCCTTACCATAACCTGTT 57.588 37.500 0.00 0.00 0.00 3.16
1613 2026 8.693120 AGATCCGACAGAGAAGTACAATAATA 57.307 34.615 0.00 0.00 0.00 0.98
1663 2076 6.653740 AGTTATTGACTGGCCAAAACTAGTAC 59.346 38.462 7.01 0.00 37.17 2.73
1664 2077 6.775708 AGTTATTGACTGGCCAAAACTAGTA 58.224 36.000 7.01 0.00 37.17 1.82
1665 2078 5.631119 AGTTATTGACTGGCCAAAACTAGT 58.369 37.500 7.01 0.00 37.17 2.57
1666 2079 5.705441 TGAGTTATTGACTGGCCAAAACTAG 59.295 40.000 7.01 0.00 39.19 2.57
1965 2422 9.146984 GCTGTAATATATATAACCACGCAAGAA 57.853 33.333 0.00 0.00 43.62 2.52
1966 2423 8.308207 TGCTGTAATATATATAACCACGCAAGA 58.692 33.333 0.00 0.00 43.62 3.02
1995 2460 6.237861 GCACTTGTAGCTAATACTTAGTGTGC 60.238 42.308 15.81 0.00 42.91 4.57
2021 2486 7.324178 AGTGAGTATGTGAAGGACTAAATCAC 58.676 38.462 0.00 0.00 42.90 3.06
2452 2922 5.415701 ACATGAAAACATAACTAGCACCTGG 59.584 40.000 0.00 0.00 0.00 4.45
2511 2981 8.316640 ACTAAGCTCAAGACACTTATTTTGAG 57.683 34.615 8.33 8.33 45.75 3.02
2512 2982 9.204570 GTACTAAGCTCAAGACACTTATTTTGA 57.795 33.333 3.19 0.00 0.00 2.69
2513 2983 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
2514 2984 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
2515 2985 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
2516 2986 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
2517 2987 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
2518 2988 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
2519 2989 8.451908 AAATTTGTACTAAGCTCAAGACACTT 57.548 30.769 3.19 0.00 0.00 3.16
2520 2990 9.726438 ATAAATTTGTACTAAGCTCAAGACACT 57.274 29.630 0.00 0.00 0.00 3.55
2545 3015 9.857957 GTTTCAACTTTGTACTAGCTCTAGTAT 57.142 33.333 16.96 1.87 46.57 2.12
2546 3016 8.853126 TGTTTCAACTTTGTACTAGCTCTAGTA 58.147 33.333 11.59 11.59 43.98 1.82
2548 3018 7.868415 AGTGTTTCAACTTTGTACTAGCTCTAG 59.132 37.037 0.00 2.55 39.04 2.43
2549 3019 7.723324 AGTGTTTCAACTTTGTACTAGCTCTA 58.277 34.615 0.00 0.00 0.00 2.43
2550 3020 6.583562 AGTGTTTCAACTTTGTACTAGCTCT 58.416 36.000 0.00 0.00 0.00 4.09
2551 3021 6.846325 AGTGTTTCAACTTTGTACTAGCTC 57.154 37.500 0.00 0.00 0.00 4.09
2552 3022 8.904099 ATAAGTGTTTCAACTTTGTACTAGCT 57.096 30.769 0.00 0.00 40.77 3.32
2553 3023 9.946165 AAATAAGTGTTTCAACTTTGTACTAGC 57.054 29.630 0.00 0.00 40.77 3.42
2556 3026 9.581099 CCAAAATAAGTGTTTCAACTTTGTACT 57.419 29.630 0.00 0.00 40.77 2.73
2557 3027 8.813282 CCCAAAATAAGTGTTTCAACTTTGTAC 58.187 33.333 0.00 0.00 40.77 2.90
2558 3028 8.750298 TCCCAAAATAAGTGTTTCAACTTTGTA 58.250 29.630 0.00 0.00 40.77 2.41
2559 3029 7.547722 GTCCCAAAATAAGTGTTTCAACTTTGT 59.452 33.333 0.00 0.00 40.77 2.83
2560 3030 7.253950 CGTCCCAAAATAAGTGTTTCAACTTTG 60.254 37.037 0.00 0.00 40.77 2.77
2561 3031 6.754675 CGTCCCAAAATAAGTGTTTCAACTTT 59.245 34.615 0.00 0.00 40.77 2.66
2562 3032 6.270064 CGTCCCAAAATAAGTGTTTCAACTT 58.730 36.000 0.00 0.00 42.89 2.66
2563 3033 5.221165 CCGTCCCAAAATAAGTGTTTCAACT 60.221 40.000 0.00 0.00 0.00 3.16
2564 3034 4.979815 CCGTCCCAAAATAAGTGTTTCAAC 59.020 41.667 0.00 0.00 0.00 3.18
2565 3035 4.888239 TCCGTCCCAAAATAAGTGTTTCAA 59.112 37.500 0.00 0.00 0.00 2.69
2566 3036 4.462133 TCCGTCCCAAAATAAGTGTTTCA 58.538 39.130 0.00 0.00 0.00 2.69
2567 3037 4.082949 CCTCCGTCCCAAAATAAGTGTTTC 60.083 45.833 0.00 0.00 0.00 2.78
2568 3038 3.824443 CCTCCGTCCCAAAATAAGTGTTT 59.176 43.478 0.00 0.00 0.00 2.83
2569 3039 3.418047 CCTCCGTCCCAAAATAAGTGTT 58.582 45.455 0.00 0.00 0.00 3.32
2570 3040 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2571 3041 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2572 3042 2.271777 TCCCTCCGTCCCAAAATAAGT 58.728 47.619 0.00 0.00 0.00 2.24
2573 3043 3.577805 ATCCCTCCGTCCCAAAATAAG 57.422 47.619 0.00 0.00 0.00 1.73
2574 3044 5.656549 ATAATCCCTCCGTCCCAAAATAA 57.343 39.130 0.00 0.00 0.00 1.40
2575 3045 5.656549 AATAATCCCTCCGTCCCAAAATA 57.343 39.130 0.00 0.00 0.00 1.40
2576 3046 4.536295 AATAATCCCTCCGTCCCAAAAT 57.464 40.909 0.00 0.00 0.00 1.82
2577 3047 4.325084 AAATAATCCCTCCGTCCCAAAA 57.675 40.909 0.00 0.00 0.00 2.44
2578 3048 4.325084 AAAATAATCCCTCCGTCCCAAA 57.675 40.909 0.00 0.00 0.00 3.28
2579 3049 5.453866 TTAAAATAATCCCTCCGTCCCAA 57.546 39.130 0.00 0.00 0.00 4.12
2580 3050 5.195185 GTTTAAAATAATCCCTCCGTCCCA 58.805 41.667 0.00 0.00 0.00 4.37
2581 3051 5.195185 TGTTTAAAATAATCCCTCCGTCCC 58.805 41.667 0.00 0.00 0.00 4.46
2582 3052 6.117488 TCTGTTTAAAATAATCCCTCCGTCC 58.883 40.000 0.00 0.00 0.00 4.79
2583 3053 7.619964 TTCTGTTTAAAATAATCCCTCCGTC 57.380 36.000 0.00 0.00 0.00 4.79
2584 3054 6.095021 GCTTCTGTTTAAAATAATCCCTCCGT 59.905 38.462 0.00 0.00 0.00 4.69
2585 3055 6.318900 AGCTTCTGTTTAAAATAATCCCTCCG 59.681 38.462 0.00 0.00 0.00 4.63
2586 3056 7.646548 AGCTTCTGTTTAAAATAATCCCTCC 57.353 36.000 0.00 0.00 0.00 4.30
2588 3058 9.920946 TCATAGCTTCTGTTTAAAATAATCCCT 57.079 29.630 0.00 0.00 0.00 4.20
2659 3129 7.609760 AATAGAAATGATGCTACGTTCACAA 57.390 32.000 0.00 0.00 0.00 3.33
2695 3168 2.054799 TGCCCTCTTACACCAGTTCTT 58.945 47.619 0.00 0.00 0.00 2.52
3048 3529 8.807581 GTTTGATTAACACTGTTTCCTTTTCTG 58.192 33.333 0.00 0.00 36.71 3.02
3280 3761 2.595124 TTCTGTGCAAAGAGTGTCGA 57.405 45.000 6.70 0.00 0.00 4.20
3375 3856 3.563808 TGTACTTGAATGTCCACAGTTGC 59.436 43.478 0.00 0.00 0.00 4.17
3487 3968 6.757897 TTCGTCAATTTTATGGCTGAGATT 57.242 33.333 0.00 0.00 0.00 2.40
3762 4814 4.697352 ACATACATCCTGCTCTTGTTGTTC 59.303 41.667 0.00 0.00 0.00 3.18
3823 4875 5.181690 TCCACAAGTGCAACAGAATAAAC 57.818 39.130 0.00 0.00 41.43 2.01
4020 5072 5.028549 AGCAGCATACAGTAAGCAACTAT 57.971 39.130 10.34 0.00 35.76 2.12
4362 5414 5.526846 GTCCTCTCATCATGGAAATGACTTC 59.473 44.000 0.00 0.00 32.79 3.01
4413 5465 1.153489 CACATCAGAGGCCCAGACG 60.153 63.158 0.00 0.00 0.00 4.18
4458 5510 3.845781 ACTTCATGCAGGGTAGTATGG 57.154 47.619 0.00 0.00 33.18 2.74
4470 5522 2.740981 CTGGTGACTCTGAACTTCATGC 59.259 50.000 0.00 0.00 0.00 4.06
4585 5637 9.936759 TGAAACCTTCAGTTAAAAACAGAAATT 57.063 25.926 0.38 0.00 37.88 1.82
4677 5730 3.664025 GTCTTTGTATTTGCACGTTCAGC 59.336 43.478 0.00 0.00 0.00 4.26
4722 5776 1.614824 AGGCAGAGGCAACCTAGCT 60.615 57.895 9.55 0.00 43.71 3.32
4735 5789 2.551459 GCTTGCATCTATTACCAGGCAG 59.449 50.000 0.00 0.00 31.56 4.85
4827 5881 3.252400 TGCAAACAGAAAGTGCAAACAG 58.748 40.909 0.00 0.00 44.88 3.16
4836 5890 2.549754 AGGATCACGTGCAAACAGAAAG 59.450 45.455 11.67 0.00 0.00 2.62
4837 5891 2.571212 AGGATCACGTGCAAACAGAAA 58.429 42.857 11.67 0.00 0.00 2.52
4838 5892 2.254546 AGGATCACGTGCAAACAGAA 57.745 45.000 11.67 0.00 0.00 3.02
4839 5893 2.254546 AAGGATCACGTGCAAACAGA 57.745 45.000 11.67 0.00 0.00 3.41
4840 5894 2.033299 ACAAAGGATCACGTGCAAACAG 59.967 45.455 11.67 0.38 0.00 3.16
4841 5895 2.020720 ACAAAGGATCACGTGCAAACA 58.979 42.857 11.67 0.00 0.00 2.83
4842 5896 2.032799 TGACAAAGGATCACGTGCAAAC 59.967 45.455 11.67 0.75 0.00 2.93
4843 5897 2.032799 GTGACAAAGGATCACGTGCAAA 59.967 45.455 11.67 0.00 37.34 3.68
4844 5898 1.601903 GTGACAAAGGATCACGTGCAA 59.398 47.619 11.67 0.00 37.34 4.08
4845 5899 1.225855 GTGACAAAGGATCACGTGCA 58.774 50.000 11.67 0.00 37.34 4.57
4867 5921 0.322546 GGGAGAAATGGCAAGTCCGT 60.323 55.000 0.00 0.00 37.80 4.69
4915 5969 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4916 5970 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4918 5972 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4919 5973 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4920 5974 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
4921 5975 5.279562 TCCCTCCGTCCCATAATATAAGA 57.720 43.478 0.00 0.00 0.00 2.10
4922 5976 6.561519 ATTCCCTCCGTCCCATAATATAAG 57.438 41.667 0.00 0.00 0.00 1.73
4923 5977 7.626084 ACATATTCCCTCCGTCCCATAATATAA 59.374 37.037 0.00 0.00 0.00 0.98
4924 5978 7.136885 ACATATTCCCTCCGTCCCATAATATA 58.863 38.462 0.00 0.00 0.00 0.86
4925 5979 5.970640 ACATATTCCCTCCGTCCCATAATAT 59.029 40.000 0.00 0.00 0.00 1.28
4927 5981 4.175962 ACATATTCCCTCCGTCCCATAAT 58.824 43.478 0.00 0.00 0.00 1.28
4928 5982 3.593942 ACATATTCCCTCCGTCCCATAA 58.406 45.455 0.00 0.00 0.00 1.90
4971 6065 7.042051 CCGAAAAGAGTTGACAGAAACTTATCA 60.042 37.037 0.00 0.00 40.48 2.15
4999 6093 1.104577 GGAAACCAAGCAACCGGTCA 61.105 55.000 8.04 0.00 33.17 4.02
5005 6099 1.408702 TCAAGCAGGAAACCAAGCAAC 59.591 47.619 0.00 0.00 30.95 4.17
5010 6104 7.775053 AATAAATAGTCAAGCAGGAAACCAA 57.225 32.000 0.00 0.00 0.00 3.67
5017 6111 6.831976 AGGGAGTAATAAATAGTCAAGCAGG 58.168 40.000 0.00 0.00 35.92 4.85
5022 6116 7.124599 TGAACGGAGGGAGTAATAAATAGTCAA 59.875 37.037 0.00 0.00 35.92 3.18
5029 6123 7.427989 AATAGTGAACGGAGGGAGTAATAAA 57.572 36.000 0.00 0.00 0.00 1.40
5039 6133 8.697067 CGTACAATTTATAATAGTGAACGGAGG 58.303 37.037 0.00 0.00 0.00 4.30
5112 6428 7.827236 TCCATTCACTTTTATAAGATGTTCCGT 59.173 33.333 0.00 0.00 35.30 4.69
5113 6429 8.208718 TCCATTCACTTTTATAAGATGTTCCG 57.791 34.615 0.00 0.00 35.30 4.30
5114 6430 8.624776 CCTCCATTCACTTTTATAAGATGTTCC 58.375 37.037 0.00 0.00 35.30 3.62
5115 6431 8.624776 CCCTCCATTCACTTTTATAAGATGTTC 58.375 37.037 0.00 0.00 35.30 3.18
5128 6444 2.361085 AGTACCCCCTCCATTCACTT 57.639 50.000 0.00 0.00 0.00 3.16
5135 6451 2.193993 GCTTCTTAAGTACCCCCTCCA 58.806 52.381 1.63 0.00 0.00 3.86
5137 6453 5.307196 TCATATGCTTCTTAAGTACCCCCTC 59.693 44.000 1.63 0.00 0.00 4.30
5141 6457 8.808092 AGAGTATCATATGCTTCTTAAGTACCC 58.192 37.037 1.63 0.00 37.82 3.69
5149 6465 4.920340 CGCGAAGAGTATCATATGCTTCTT 59.080 41.667 0.00 11.79 37.82 2.52
5150 6466 4.480541 CGCGAAGAGTATCATATGCTTCT 58.519 43.478 0.00 2.76 37.82 2.85
5151 6467 3.610242 CCGCGAAGAGTATCATATGCTTC 59.390 47.826 8.23 4.12 37.82 3.86
5152 6468 3.255888 TCCGCGAAGAGTATCATATGCTT 59.744 43.478 8.23 0.00 37.82 3.91
5153 6469 2.820197 TCCGCGAAGAGTATCATATGCT 59.180 45.455 8.23 0.00 37.82 3.79
5168 6484 0.673985 CATCTTCCATAGGTCCGCGA 59.326 55.000 8.23 0.00 0.00 5.87
5169 6485 0.389391 ACATCTTCCATAGGTCCGCG 59.611 55.000 0.00 0.00 0.00 6.46
5197 6523 8.104566 TCCCGTTGATTCCTCTATAAAAGAAAA 58.895 33.333 0.00 0.00 32.46 2.29
5201 6527 6.817184 TCTCCCGTTGATTCCTCTATAAAAG 58.183 40.000 0.00 0.00 0.00 2.27
5202 6528 6.610020 TCTCTCCCGTTGATTCCTCTATAAAA 59.390 38.462 0.00 0.00 0.00 1.52
5206 6532 4.186077 TCTCTCCCGTTGATTCCTCTAT 57.814 45.455 0.00 0.00 0.00 1.98
5209 6535 3.828875 ATTCTCTCCCGTTGATTCCTC 57.171 47.619 0.00 0.00 0.00 3.71
5210 6536 3.777522 AGAATTCTCTCCCGTTGATTCCT 59.222 43.478 0.88 0.00 0.00 3.36
5211 6537 4.123506 GAGAATTCTCTCCCGTTGATTCC 58.876 47.826 25.26 0.00 42.14 3.01
5223 6554 6.709846 GCAGCACAAATATAGGAGAATTCTCT 59.290 38.462 29.64 19.59 42.48 3.10
5247 6578 2.292794 TACCAATCCGAGCACCGAGC 62.293 60.000 0.00 0.00 46.19 5.03
5248 6579 0.174845 TTACCAATCCGAGCACCGAG 59.825 55.000 0.00 0.00 41.76 4.63
5249 6580 0.108520 GTTACCAATCCGAGCACCGA 60.109 55.000 0.00 0.00 41.76 4.69
5250 6581 0.108329 AGTTACCAATCCGAGCACCG 60.108 55.000 0.00 0.00 38.18 4.94
5251 6582 1.369625 CAGTTACCAATCCGAGCACC 58.630 55.000 0.00 0.00 0.00 5.01
5252 6583 1.338769 ACCAGTTACCAATCCGAGCAC 60.339 52.381 0.00 0.00 0.00 4.40
5253 6584 0.981183 ACCAGTTACCAATCCGAGCA 59.019 50.000 0.00 0.00 0.00 4.26
5282 6613 7.332557 TCCTATAATTGAAAAAGAGGTGCGTA 58.667 34.615 0.00 0.00 0.00 4.42
5283 6614 6.177610 TCCTATAATTGAAAAAGAGGTGCGT 58.822 36.000 0.00 0.00 0.00 5.24
5284 6615 6.677781 TCCTATAATTGAAAAAGAGGTGCG 57.322 37.500 0.00 0.00 0.00 5.34
5285 6616 8.686334 TGATTCCTATAATTGAAAAAGAGGTGC 58.314 33.333 0.00 0.00 0.00 5.01
5288 6619 9.722056 CGTTGATTCCTATAATTGAAAAAGAGG 57.278 33.333 0.00 0.00 0.00 3.69
5289 6620 9.722056 CCGTTGATTCCTATAATTGAAAAAGAG 57.278 33.333 0.00 0.00 0.00 2.85
5290 6621 8.682710 CCCGTTGATTCCTATAATTGAAAAAGA 58.317 33.333 0.00 0.00 0.00 2.52
5291 6622 7.920682 CCCCGTTGATTCCTATAATTGAAAAAG 59.079 37.037 0.00 0.00 0.00 2.27
5292 6623 7.147811 CCCCCGTTGATTCCTATAATTGAAAAA 60.148 37.037 0.00 0.00 0.00 1.94
5293 6624 6.322712 CCCCCGTTGATTCCTATAATTGAAAA 59.677 38.462 0.00 0.00 0.00 2.29
5294 6625 5.830991 CCCCCGTTGATTCCTATAATTGAAA 59.169 40.000 0.00 0.00 0.00 2.69
5295 6626 5.103855 ACCCCCGTTGATTCCTATAATTGAA 60.104 40.000 0.00 0.00 0.00 2.69
5296 6627 4.414182 ACCCCCGTTGATTCCTATAATTGA 59.586 41.667 0.00 0.00 0.00 2.57
5297 6628 4.518970 CACCCCCGTTGATTCCTATAATTG 59.481 45.833 0.00 0.00 0.00 2.32
5298 6629 4.447180 CCACCCCCGTTGATTCCTATAATT 60.447 45.833 0.00 0.00 0.00 1.40
5299 6630 3.073946 CCACCCCCGTTGATTCCTATAAT 59.926 47.826 0.00 0.00 0.00 1.28
5300 6631 2.440253 CCACCCCCGTTGATTCCTATAA 59.560 50.000 0.00 0.00 0.00 0.98
5301 6632 2.051692 CCACCCCCGTTGATTCCTATA 58.948 52.381 0.00 0.00 0.00 1.31
5302 6633 0.843984 CCACCCCCGTTGATTCCTAT 59.156 55.000 0.00 0.00 0.00 2.57
5303 6634 0.252789 TCCACCCCCGTTGATTCCTA 60.253 55.000 0.00 0.00 0.00 2.94
5304 6635 1.137594 TTCCACCCCCGTTGATTCCT 61.138 55.000 0.00 0.00 0.00 3.36
5305 6636 0.033503 ATTCCACCCCCGTTGATTCC 60.034 55.000 0.00 0.00 0.00 3.01
5306 6637 1.749063 GAATTCCACCCCCGTTGATTC 59.251 52.381 0.00 0.00 0.00 2.52
5307 6638 1.357761 AGAATTCCACCCCCGTTGATT 59.642 47.619 0.65 0.00 0.00 2.57
5308 6639 0.999712 AGAATTCCACCCCCGTTGAT 59.000 50.000 0.65 0.00 0.00 2.57
5309 6640 0.326927 GAGAATTCCACCCCCGTTGA 59.673 55.000 0.65 0.00 0.00 3.18
5310 6641 0.679960 GGAGAATTCCACCCCCGTTG 60.680 60.000 0.65 0.00 43.45 4.10
5311 6642 1.689412 GGAGAATTCCACCCCCGTT 59.311 57.895 0.65 0.00 43.45 4.44
5312 6643 2.306384 GGGAGAATTCCACCCCCGT 61.306 63.158 21.13 0.00 45.98 5.28
5313 6644 1.984288 GAGGGAGAATTCCACCCCCG 61.984 65.000 25.43 0.00 45.98 5.73
5314 6645 0.624795 AGAGGGAGAATTCCACCCCC 60.625 60.000 25.43 18.41 45.98 5.40
5315 6646 0.548510 CAGAGGGAGAATTCCACCCC 59.451 60.000 25.43 21.09 45.98 4.95
5316 6647 1.290134 ACAGAGGGAGAATTCCACCC 58.710 55.000 23.11 23.11 45.98 4.61
5317 6648 2.305927 TCAACAGAGGGAGAATTCCACC 59.694 50.000 0.65 4.84 45.98 4.61
5318 6649 3.604582 CTCAACAGAGGGAGAATTCCAC 58.395 50.000 0.65 0.00 45.98 4.02
5319 6650 2.026822 GCTCAACAGAGGGAGAATTCCA 60.027 50.000 0.65 0.00 45.98 3.53
5320 6651 2.238395 AGCTCAACAGAGGGAGAATTCC 59.762 50.000 0.65 0.00 43.23 3.01
5321 6652 3.625649 AGCTCAACAGAGGGAGAATTC 57.374 47.619 0.00 0.00 32.87 2.17
5322 6653 4.379302 AAAGCTCAACAGAGGGAGAATT 57.621 40.909 0.00 0.00 32.87 2.17
5323 6654 4.379302 AAAAGCTCAACAGAGGGAGAAT 57.621 40.909 0.00 0.00 32.87 2.40
5324 6655 3.864789 AAAAGCTCAACAGAGGGAGAA 57.135 42.857 0.00 0.00 32.87 2.87
5325 6656 3.904339 AGTAAAAGCTCAACAGAGGGAGA 59.096 43.478 0.00 0.00 32.87 3.71
5326 6657 4.278975 AGTAAAAGCTCAACAGAGGGAG 57.721 45.455 0.00 0.00 0.00 4.30
5327 6658 4.348168 AGAAGTAAAAGCTCAACAGAGGGA 59.652 41.667 0.00 0.00 0.00 4.20
5328 6659 4.646572 AGAAGTAAAAGCTCAACAGAGGG 58.353 43.478 0.00 0.00 0.00 4.30
5329 6660 6.931840 AGTAAGAAGTAAAAGCTCAACAGAGG 59.068 38.462 0.00 0.00 0.00 3.69
5330 6661 7.954788 AGTAAGAAGTAAAAGCTCAACAGAG 57.045 36.000 0.00 0.00 0.00 3.35
5331 6662 7.599245 GCTAGTAAGAAGTAAAAGCTCAACAGA 59.401 37.037 0.00 0.00 0.00 3.41
5332 6663 7.385205 TGCTAGTAAGAAGTAAAAGCTCAACAG 59.615 37.037 0.00 0.00 0.00 3.16
5333 6664 7.214381 TGCTAGTAAGAAGTAAAAGCTCAACA 58.786 34.615 0.00 0.00 0.00 3.33
5334 6665 7.653767 TGCTAGTAAGAAGTAAAAGCTCAAC 57.346 36.000 0.00 0.00 0.00 3.18
5335 6666 8.671384 TTTGCTAGTAAGAAGTAAAAGCTCAA 57.329 30.769 0.00 0.00 0.00 3.02
5336 6667 8.671384 TTTTGCTAGTAAGAAGTAAAAGCTCA 57.329 30.769 0.00 0.00 34.82 4.26
5337 6668 8.989980 TCTTTTGCTAGTAAGAAGTAAAAGCTC 58.010 33.333 16.59 0.00 46.98 4.09
5338 6669 8.904099 TCTTTTGCTAGTAAGAAGTAAAAGCT 57.096 30.769 16.59 0.00 46.98 3.74
5339 6670 7.746916 GCTCTTTTGCTAGTAAGAAGTAAAAGC 59.253 37.037 16.59 7.62 46.98 3.51
5341 6672 7.174426 GGGCTCTTTTGCTAGTAAGAAGTAAAA 59.826 37.037 11.91 0.00 36.57 1.52
5342 6673 6.653740 GGGCTCTTTTGCTAGTAAGAAGTAAA 59.346 38.462 11.91 0.00 30.55 2.01
5343 6674 6.171213 GGGCTCTTTTGCTAGTAAGAAGTAA 58.829 40.000 11.91 0.00 30.55 2.24
5344 6675 5.623824 CGGGCTCTTTTGCTAGTAAGAAGTA 60.624 44.000 11.91 3.61 30.55 2.24
5345 6676 4.580868 GGGCTCTTTTGCTAGTAAGAAGT 58.419 43.478 11.91 0.00 30.55 3.01
5346 6677 3.619038 CGGGCTCTTTTGCTAGTAAGAAG 59.381 47.826 0.00 2.10 30.55 2.85
5347 6678 3.007614 ACGGGCTCTTTTGCTAGTAAGAA 59.992 43.478 0.00 0.00 30.55 2.52
5348 6679 2.565834 ACGGGCTCTTTTGCTAGTAAGA 59.434 45.455 0.00 0.00 0.00 2.10
5349 6680 2.673368 CACGGGCTCTTTTGCTAGTAAG 59.327 50.000 0.00 0.00 0.00 2.34
5350 6681 2.695359 CACGGGCTCTTTTGCTAGTAA 58.305 47.619 0.00 0.00 0.00 2.24
5351 6682 1.674817 GCACGGGCTCTTTTGCTAGTA 60.675 52.381 0.00 0.00 36.96 1.82
5352 6683 0.955919 GCACGGGCTCTTTTGCTAGT 60.956 55.000 0.00 0.00 36.96 2.57
5353 6684 0.955428 TGCACGGGCTCTTTTGCTAG 60.955 55.000 12.74 0.00 41.91 3.42
5354 6685 0.322456 ATGCACGGGCTCTTTTGCTA 60.322 50.000 12.74 0.00 41.91 3.49
5355 6686 1.181098 AATGCACGGGCTCTTTTGCT 61.181 50.000 12.74 0.00 41.91 3.91
5356 6687 1.010419 CAATGCACGGGCTCTTTTGC 61.010 55.000 12.74 0.00 41.91 3.68
5357 6688 1.010419 GCAATGCACGGGCTCTTTTG 61.010 55.000 12.74 10.80 41.91 2.44
5358 6689 1.290009 GCAATGCACGGGCTCTTTT 59.710 52.632 12.74 0.00 41.91 2.27
5359 6690 1.462731 TTGCAATGCACGGGCTCTTT 61.463 50.000 12.74 0.00 38.71 2.52
5360 6691 1.902918 TTGCAATGCACGGGCTCTT 60.903 52.632 12.74 0.81 38.71 2.85
5361 6692 2.282391 TTGCAATGCACGGGCTCT 60.282 55.556 12.74 0.00 38.71 4.09
5362 6693 2.126346 GTTGCAATGCACGGGCTC 60.126 61.111 12.74 0.00 38.71 4.70
5363 6694 4.041917 CGTTGCAATGCACGGGCT 62.042 61.111 12.74 0.00 38.71 5.19
5366 6697 3.326889 CTCCCGTTGCAATGCACGG 62.327 63.158 28.95 28.95 45.37 4.94
5367 6698 1.851021 TTCTCCCGTTGCAATGCACG 61.851 55.000 7.72 14.71 38.71 5.34
5368 6699 0.313672 TTTCTCCCGTTGCAATGCAC 59.686 50.000 7.72 2.39 38.71 4.57
5369 6700 1.000385 CTTTTCTCCCGTTGCAATGCA 60.000 47.619 13.42 2.72 36.47 3.96
5370 6701 1.269448 TCTTTTCTCCCGTTGCAATGC 59.731 47.619 13.42 0.00 0.00 3.56
5371 6702 2.813754 TCTCTTTTCTCCCGTTGCAATG 59.186 45.455 11.90 11.90 0.00 2.82
5372 6703 3.140325 TCTCTTTTCTCCCGTTGCAAT 57.860 42.857 0.59 0.00 0.00 3.56
5373 6704 2.631160 TCTCTTTTCTCCCGTTGCAA 57.369 45.000 0.00 0.00 0.00 4.08
5374 6705 2.038426 TGATCTCTTTTCTCCCGTTGCA 59.962 45.455 0.00 0.00 0.00 4.08
5375 6706 2.699954 TGATCTCTTTTCTCCCGTTGC 58.300 47.619 0.00 0.00 0.00 4.17
5376 6707 6.989169 AGATTATGATCTCTTTTCTCCCGTTG 59.011 38.462 0.00 0.00 38.21 4.10
5377 6708 7.130681 AGATTATGATCTCTTTTCTCCCGTT 57.869 36.000 0.00 0.00 38.21 4.44
5378 6709 6.739331 AGATTATGATCTCTTTTCTCCCGT 57.261 37.500 0.00 0.00 38.21 5.28
5379 6710 7.212976 TGAAGATTATGATCTCTTTTCTCCCG 58.787 38.462 0.00 0.00 41.78 5.14
5380 6711 8.970859 TTGAAGATTATGATCTCTTTTCTCCC 57.029 34.615 0.00 0.00 41.78 4.30
5383 6714 8.848182 GCCATTGAAGATTATGATCTCTTTTCT 58.152 33.333 0.00 0.00 41.78 2.52
5384 6715 8.081025 GGCCATTGAAGATTATGATCTCTTTTC 58.919 37.037 0.00 0.00 41.78 2.29
5385 6716 7.562454 TGGCCATTGAAGATTATGATCTCTTTT 59.438 33.333 0.00 0.00 41.78 2.27
5386 6717 7.064866 TGGCCATTGAAGATTATGATCTCTTT 58.935 34.615 0.00 0.00 41.78 2.52
5387 6718 6.607970 TGGCCATTGAAGATTATGATCTCTT 58.392 36.000 0.00 0.00 41.78 2.85
5388 6719 6.196918 TGGCCATTGAAGATTATGATCTCT 57.803 37.500 0.00 0.00 41.78 3.10
5389 6720 6.657966 TCATGGCCATTGAAGATTATGATCTC 59.342 38.462 17.92 0.00 41.78 2.75
5390 6721 6.549242 TCATGGCCATTGAAGATTATGATCT 58.451 36.000 17.92 0.00 44.51 2.75
5391 6722 6.829229 TCATGGCCATTGAAGATTATGATC 57.171 37.500 17.92 0.00 0.00 2.92
5392 6723 6.951778 TGATCATGGCCATTGAAGATTATGAT 59.048 34.615 17.92 13.27 36.90 2.45
5393 6724 6.308566 TGATCATGGCCATTGAAGATTATGA 58.691 36.000 17.92 8.28 0.00 2.15
5394 6725 6.584185 TGATCATGGCCATTGAAGATTATG 57.416 37.500 17.92 1.77 0.00 1.90
5395 6726 6.724441 ACATGATCATGGCCATTGAAGATTAT 59.276 34.615 33.31 14.52 42.91 1.28
5396 6727 6.072649 ACATGATCATGGCCATTGAAGATTA 58.927 36.000 33.31 12.80 42.91 1.75
5397 6728 4.899457 ACATGATCATGGCCATTGAAGATT 59.101 37.500 33.31 10.15 42.91 2.40
5398 6729 4.480115 ACATGATCATGGCCATTGAAGAT 58.520 39.130 33.31 15.83 42.91 2.40
5399 6730 3.905968 ACATGATCATGGCCATTGAAGA 58.094 40.909 33.31 11.05 42.91 2.87
5400 6731 4.665833 AACATGATCATGGCCATTGAAG 57.334 40.909 33.31 4.74 42.91 3.02
5401 6732 5.179533 CAAAACATGATCATGGCCATTGAA 58.820 37.500 33.31 4.94 42.91 2.69
5402 6733 4.760878 CAAAACATGATCATGGCCATTGA 58.239 39.130 33.31 17.24 42.91 2.57
5403 6734 3.311322 GCAAAACATGATCATGGCCATTG 59.689 43.478 33.31 28.40 42.91 2.82
5404 6735 3.199071 AGCAAAACATGATCATGGCCATT 59.801 39.130 33.31 21.13 42.91 3.16
5405 6736 2.769663 AGCAAAACATGATCATGGCCAT 59.230 40.909 33.31 14.09 42.91 4.40
5406 6737 2.181125 AGCAAAACATGATCATGGCCA 58.819 42.857 33.31 8.56 42.91 5.36
5407 6738 2.973694 AGCAAAACATGATCATGGCC 57.026 45.000 33.31 18.54 42.91 5.36
5408 6739 4.374843 TGTAGCAAAACATGATCATGGC 57.625 40.909 33.31 26.60 42.91 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.