Multiple sequence alignment - TraesCS3B01G277900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G277900 chr3B 100.000 4832 0 0 1 4832 447985037 447980206 0.000000e+00 8924.0
1 TraesCS3B01G277900 chr3D 92.065 4499 196 74 442 4832 348161654 348157209 0.000000e+00 6181.0
2 TraesCS3B01G277900 chr3A 92.191 4418 218 43 495 4832 467156552 467152182 0.000000e+00 6130.0
3 TraesCS3B01G277900 chr6B 96.536 433 13 2 2095 2527 659283572 659283142 0.000000e+00 715.0
4 TraesCS3B01G277900 chr6B 93.822 437 24 1 1 437 599726657 599727090 0.000000e+00 654.0
5 TraesCS3B01G277900 chr6B 92.551 443 30 3 1 441 644905984 644905543 2.450000e-177 632.0
6 TraesCS3B01G277900 chr6B 100.000 28 0 0 4370 4397 536817199 536817226 9.000000e-03 52.8
7 TraesCS3B01G277900 chr1B 96.536 433 13 2 2092 2524 638545275 638545705 0.000000e+00 715.0
8 TraesCS3B01G277900 chr1B 96.512 430 12 2 2095 2524 2838674 2839100 0.000000e+00 708.0
9 TraesCS3B01G277900 chr1B 96.512 430 12 2 2095 2524 609697547 609697973 0.000000e+00 708.0
10 TraesCS3B01G277900 chr1B 95.753 259 7 4 2270 2527 627870989 627870734 9.680000e-112 414.0
11 TraesCS3B01G277900 chr5B 96.305 433 14 2 2095 2527 667222329 667221899 0.000000e+00 710.0
12 TraesCS3B01G277900 chr5B 92.938 439 26 3 1 439 217935341 217935774 6.820000e-178 634.0
13 TraesCS3B01G277900 chr5B 94.757 267 8 6 2260 2524 500098846 500099108 1.250000e-110 411.0
14 TraesCS3B01G277900 chr6D 94.582 443 20 4 1 442 144603691 144603252 0.000000e+00 682.0
15 TraesCS3B01G277900 chr4D 94.943 435 21 1 3 437 69135664 69135231 0.000000e+00 680.0
16 TraesCS3B01G277900 chr4A 94.292 438 17 4 1 437 631640962 631641392 0.000000e+00 664.0
17 TraesCS3B01G277900 chr4A 92.906 437 29 1 1 437 673082236 673082670 6.820000e-178 634.0
18 TraesCS3B01G277900 chr7B 93.905 443 19 3 1 437 605109515 605109075 0.000000e+00 662.0
19 TraesCS3B01G277900 chr7B 92.841 447 26 6 1 445 631318083 631318525 1.130000e-180 643.0
20 TraesCS3B01G277900 chr1A 92.500 40 2 1 4359 4397 449615323 449615284 6.760000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G277900 chr3B 447980206 447985037 4831 True 8924 8924 100.000 1 4832 1 chr3B.!!$R1 4831
1 TraesCS3B01G277900 chr3D 348157209 348161654 4445 True 6181 6181 92.065 442 4832 1 chr3D.!!$R1 4390
2 TraesCS3B01G277900 chr3A 467152182 467156552 4370 True 6130 6130 92.191 495 4832 1 chr3A.!!$R1 4337

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 303 0.103208 TTTTTCACGCCGGCACATTT 59.897 45.000 28.98 0.79 0.00 2.32 F
438 439 0.329261 CCCCATTGGAGTTGCTCTCA 59.671 55.000 3.62 0.00 44.40 3.27 F
565 579 0.523072 CAAAACCAGCATCAGGTCCG 59.477 55.000 0.00 0.00 38.76 4.79 F
1411 1432 0.605319 TGGCCCAGACGAAACACATC 60.605 55.000 0.00 0.00 0.00 3.06 F
1645 1670 0.968405 GAGCAGGTTTTCCAATGGCA 59.032 50.000 0.00 0.00 43.73 4.92 F
1649 1674 1.001181 CAGGTTTTCCAATGGCACCAG 59.999 52.381 14.80 5.77 43.73 4.00 F
1654 1679 1.139498 TTCCAATGGCACCAGGGAGA 61.139 55.000 11.43 3.32 35.65 3.71 F
3144 3248 0.036164 TTCTGTGCATGGGTTAGCGT 59.964 50.000 0.00 0.00 0.00 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1429 1454 0.040336 GGCATGATGAAGCATGAGCG 60.040 55.000 12.50 0.0 46.64 5.03 R
1970 1995 0.096976 CGATTGACCGTGACATTGCC 59.903 55.000 0.00 0.0 0.00 4.52 R
2110 2135 2.028476 TCATGTTGGGACTCGTGTAAGG 60.028 50.000 0.00 0.0 0.00 2.69 R
3125 3229 0.036164 ACGCTAACCCATGCACAGAA 59.964 50.000 0.00 0.0 0.00 3.02 R
3128 3232 0.673333 CAGACGCTAACCCATGCACA 60.673 55.000 0.00 0.0 0.00 4.57 R
3141 3245 1.221414 AAGAAGCTTCACACAGACGC 58.779 50.000 27.57 0.0 41.51 5.19 R
3194 3298 1.409064 TCACCTGCAAGTAGATAGGCG 59.591 52.381 0.00 0.0 33.57 5.52 R
4090 4202 0.107945 CAGTTAGCCCAGGACTGAGC 60.108 60.000 0.00 0.0 42.54 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.071837 TGGCATCGTACCAGGCGA 61.072 61.111 0.00 0.00 42.75 5.54
36 37 2.585247 GGCATCGTACCAGGCGAC 60.585 66.667 0.00 0.00 41.33 5.19
37 38 2.954868 GCATCGTACCAGGCGACG 60.955 66.667 8.00 8.00 41.33 5.12
38 39 2.488355 CATCGTACCAGGCGACGT 59.512 61.111 12.95 0.00 41.33 4.34
39 40 1.153901 CATCGTACCAGGCGACGTT 60.154 57.895 12.95 3.82 41.33 3.99
40 41 1.138047 CATCGTACCAGGCGACGTTC 61.138 60.000 12.95 0.00 41.33 3.95
41 42 2.588146 ATCGTACCAGGCGACGTTCG 62.588 60.000 12.95 0.00 43.89 3.95
42 43 2.505557 GTACCAGGCGACGTTCGG 60.506 66.667 8.96 0.00 40.84 4.30
43 44 3.751246 TACCAGGCGACGTTCGGG 61.751 66.667 8.96 2.46 40.84 5.14
67 68 4.475135 GGCCCTGCTCCGGTCTTC 62.475 72.222 0.00 0.00 0.00 2.87
68 69 3.706373 GCCCTGCTCCGGTCTTCA 61.706 66.667 0.00 0.00 0.00 3.02
69 70 3.036429 GCCCTGCTCCGGTCTTCAT 62.036 63.158 0.00 0.00 0.00 2.57
70 71 1.144936 CCCTGCTCCGGTCTTCATC 59.855 63.158 0.00 0.00 0.00 2.92
71 72 1.227089 CCTGCTCCGGTCTTCATCG 60.227 63.158 0.00 0.00 0.00 3.84
72 73 1.667154 CCTGCTCCGGTCTTCATCGA 61.667 60.000 0.00 0.00 0.00 3.59
73 74 0.526524 CTGCTCCGGTCTTCATCGAC 60.527 60.000 0.00 0.00 0.00 4.20
80 81 3.330766 GTCTTCATCGACCTCACCG 57.669 57.895 0.00 0.00 0.00 4.94
81 82 0.809385 GTCTTCATCGACCTCACCGA 59.191 55.000 0.00 0.00 40.53 4.69
82 83 0.809385 TCTTCATCGACCTCACCGAC 59.191 55.000 0.00 0.00 38.97 4.79
83 84 0.523546 CTTCATCGACCTCACCGACG 60.524 60.000 0.00 0.00 38.97 5.12
84 85 0.956902 TTCATCGACCTCACCGACGA 60.957 55.000 0.00 0.00 38.97 4.20
85 86 1.226323 CATCGACCTCACCGACGAC 60.226 63.158 0.00 0.00 38.97 4.34
86 87 2.747822 ATCGACCTCACCGACGACG 61.748 63.158 0.00 0.00 38.97 5.12
105 106 4.814294 CGGCGTCGAGGGAAAGGG 62.814 72.222 1.44 0.00 39.00 3.95
107 108 4.388499 GCGTCGAGGGAAAGGGCA 62.388 66.667 7.31 0.00 0.00 5.36
108 109 2.345991 CGTCGAGGGAAAGGGCAA 59.654 61.111 0.00 0.00 0.00 4.52
109 110 1.741770 CGTCGAGGGAAAGGGCAAG 60.742 63.158 0.00 0.00 0.00 4.01
110 111 1.377333 GTCGAGGGAAAGGGCAAGG 60.377 63.158 0.00 0.00 0.00 3.61
111 112 2.044946 CGAGGGAAAGGGCAAGGG 60.045 66.667 0.00 0.00 0.00 3.95
112 113 2.363018 GAGGGAAAGGGCAAGGGC 60.363 66.667 0.00 0.00 40.13 5.19
113 114 3.192630 AGGGAAAGGGCAAGGGCA 61.193 61.111 0.00 0.00 43.71 5.36
114 115 2.203773 GGGAAAGGGCAAGGGCAA 60.204 61.111 0.00 0.00 43.71 4.52
115 116 2.285773 GGGAAAGGGCAAGGGCAAG 61.286 63.158 0.00 0.00 43.71 4.01
116 117 2.285773 GGAAAGGGCAAGGGCAAGG 61.286 63.158 0.00 0.00 43.71 3.61
117 118 2.924635 AAAGGGCAAGGGCAAGGC 60.925 61.111 0.00 0.00 43.71 4.35
128 129 4.719369 GCAAGGCCGACGACGTCT 62.719 66.667 24.36 4.01 37.88 4.18
129 130 2.872557 CAAGGCCGACGACGTCTA 59.127 61.111 24.36 0.00 37.88 2.59
130 131 1.226323 CAAGGCCGACGACGTCTAG 60.226 63.158 24.36 16.64 37.88 2.43
131 132 2.404995 AAGGCCGACGACGTCTAGG 61.405 63.158 24.36 19.52 37.88 3.02
132 133 3.885521 GGCCGACGACGTCTAGGG 61.886 72.222 24.36 18.86 37.88 3.53
133 134 4.549516 GCCGACGACGTCTAGGGC 62.550 72.222 23.47 23.47 37.88 5.19
134 135 3.129502 CCGACGACGTCTAGGGCA 61.130 66.667 24.36 0.00 37.88 5.36
135 136 2.403987 CGACGACGTCTAGGGCAG 59.596 66.667 24.36 4.53 34.56 4.85
136 137 2.396955 CGACGACGTCTAGGGCAGT 61.397 63.158 24.36 1.48 34.56 4.40
137 138 1.136984 GACGACGTCTAGGGCAGTG 59.863 63.158 20.52 0.00 0.00 3.66
138 139 1.584380 GACGACGTCTAGGGCAGTGT 61.584 60.000 20.52 0.00 0.00 3.55
139 140 1.154016 CGACGTCTAGGGCAGTGTG 60.154 63.158 14.70 0.00 0.00 3.82
140 141 1.446272 GACGTCTAGGGCAGTGTGC 60.446 63.158 8.70 0.00 44.08 4.57
141 142 2.507102 CGTCTAGGGCAGTGTGCG 60.507 66.667 0.00 0.00 46.21 5.34
142 143 2.125512 GTCTAGGGCAGTGTGCGG 60.126 66.667 0.00 0.00 46.21 5.69
143 144 3.390521 TCTAGGGCAGTGTGCGGG 61.391 66.667 0.00 0.00 46.21 6.13
144 145 4.473520 CTAGGGCAGTGTGCGGGG 62.474 72.222 0.00 0.00 46.21 5.73
169 170 4.643387 AGGCGGGCGCAGACTTTT 62.643 61.111 10.83 0.00 44.11 2.27
170 171 3.670377 GGCGGGCGCAGACTTTTT 61.670 61.111 10.83 0.00 44.11 1.94
209 210 9.762381 TTAATGTTTATTGGATTTAGGTGGACT 57.238 29.630 0.00 0.00 0.00 3.85
210 211 8.664669 AATGTTTATTGGATTTAGGTGGACTT 57.335 30.769 0.00 0.00 0.00 3.01
211 212 8.664669 ATGTTTATTGGATTTAGGTGGACTTT 57.335 30.769 0.00 0.00 0.00 2.66
212 213 7.891561 TGTTTATTGGATTTAGGTGGACTTTG 58.108 34.615 0.00 0.00 0.00 2.77
213 214 7.039363 TGTTTATTGGATTTAGGTGGACTTTGG 60.039 37.037 0.00 0.00 0.00 3.28
214 215 2.802719 TGGATTTAGGTGGACTTTGGC 58.197 47.619 0.00 0.00 0.00 4.52
215 216 2.100197 GGATTTAGGTGGACTTTGGCC 58.900 52.381 0.00 0.00 0.00 5.36
216 217 1.743394 GATTTAGGTGGACTTTGGCCG 59.257 52.381 0.00 0.00 0.00 6.13
217 218 0.250989 TTTAGGTGGACTTTGGCCGG 60.251 55.000 0.00 0.00 0.00 6.13
218 219 2.757980 TTAGGTGGACTTTGGCCGGC 62.758 60.000 21.18 21.18 0.00 6.13
221 222 4.572571 TGGACTTTGGCCGGCGTT 62.573 61.111 22.54 1.31 0.00 4.84
222 223 3.292159 GGACTTTGGCCGGCGTTT 61.292 61.111 22.54 1.74 0.00 3.60
223 224 2.050442 GACTTTGGCCGGCGTTTG 60.050 61.111 22.54 13.30 0.00 2.93
224 225 2.517402 ACTTTGGCCGGCGTTTGA 60.517 55.556 22.54 3.25 0.00 2.69
225 226 2.050442 CTTTGGCCGGCGTTTGAC 60.050 61.111 22.54 5.65 0.00 3.18
226 227 3.551887 CTTTGGCCGGCGTTTGACC 62.552 63.158 22.54 4.79 0.00 4.02
234 235 3.284449 GCGTTTGACCGGCCACTT 61.284 61.111 0.00 0.00 0.00 3.16
235 236 2.841160 GCGTTTGACCGGCCACTTT 61.841 57.895 0.00 0.00 0.00 2.66
236 237 1.508808 GCGTTTGACCGGCCACTTTA 61.509 55.000 0.00 0.00 0.00 1.85
237 238 1.161843 CGTTTGACCGGCCACTTTAT 58.838 50.000 0.00 0.00 0.00 1.40
238 239 1.135803 CGTTTGACCGGCCACTTTATG 60.136 52.381 0.00 0.00 0.00 1.90
239 240 1.883926 GTTTGACCGGCCACTTTATGT 59.116 47.619 0.00 0.00 0.00 2.29
240 241 2.279935 TTGACCGGCCACTTTATGTT 57.720 45.000 0.00 0.00 0.00 2.71
241 242 2.279935 TGACCGGCCACTTTATGTTT 57.720 45.000 0.00 0.00 0.00 2.83
242 243 3.420300 TGACCGGCCACTTTATGTTTA 57.580 42.857 0.00 0.00 0.00 2.01
243 244 3.752665 TGACCGGCCACTTTATGTTTAA 58.247 40.909 0.00 0.00 0.00 1.52
244 245 4.337145 TGACCGGCCACTTTATGTTTAAT 58.663 39.130 0.00 0.00 0.00 1.40
245 246 4.767928 TGACCGGCCACTTTATGTTTAATT 59.232 37.500 0.00 0.00 0.00 1.40
246 247 5.944599 TGACCGGCCACTTTATGTTTAATTA 59.055 36.000 0.00 0.00 0.00 1.40
247 248 6.603997 TGACCGGCCACTTTATGTTTAATTAT 59.396 34.615 0.00 0.00 0.00 1.28
248 249 6.801575 ACCGGCCACTTTATGTTTAATTATG 58.198 36.000 0.00 0.00 0.00 1.90
249 250 6.378848 ACCGGCCACTTTATGTTTAATTATGT 59.621 34.615 0.00 0.00 0.00 2.29
250 251 7.093684 ACCGGCCACTTTATGTTTAATTATGTT 60.094 33.333 0.00 0.00 0.00 2.71
251 252 7.762159 CCGGCCACTTTATGTTTAATTATGTTT 59.238 33.333 2.24 0.00 0.00 2.83
252 253 9.790389 CGGCCACTTTATGTTTAATTATGTTTA 57.210 29.630 2.24 0.00 0.00 2.01
277 278 8.810652 ATTTATGTTTATTTCGTGCAACTTGT 57.189 26.923 0.00 0.00 31.75 3.16
278 279 8.635877 TTTATGTTTATTTCGTGCAACTTGTT 57.364 26.923 0.00 0.00 31.75 2.83
279 280 8.635877 TTATGTTTATTTCGTGCAACTTGTTT 57.364 26.923 0.00 0.00 31.75 2.83
280 281 6.324522 TGTTTATTTCGTGCAACTTGTTTG 57.675 33.333 0.00 0.00 38.37 2.93
281 282 5.864474 TGTTTATTTCGTGCAACTTGTTTGT 59.136 32.000 0.00 0.00 37.54 2.83
282 283 6.366332 TGTTTATTTCGTGCAACTTGTTTGTT 59.634 30.769 0.00 0.00 37.54 2.83
283 284 6.952935 TTATTTCGTGCAACTTGTTTGTTT 57.047 29.167 0.00 0.00 37.54 2.83
284 285 5.854431 ATTTCGTGCAACTTGTTTGTTTT 57.146 30.435 0.00 0.00 37.54 2.43
285 286 5.659048 TTTCGTGCAACTTGTTTGTTTTT 57.341 30.435 0.00 0.00 37.54 1.94
300 301 3.437867 TTTTTCACGCCGGCACAT 58.562 50.000 28.98 8.36 0.00 3.21
301 302 1.736586 TTTTTCACGCCGGCACATT 59.263 47.368 28.98 3.78 0.00 2.71
302 303 0.103208 TTTTTCACGCCGGCACATTT 59.897 45.000 28.98 0.79 0.00 2.32
303 304 0.596083 TTTTCACGCCGGCACATTTG 60.596 50.000 28.98 14.48 0.00 2.32
304 305 2.413437 TTTCACGCCGGCACATTTGG 62.413 55.000 28.98 10.77 0.00 3.28
305 306 4.418401 CACGCCGGCACATTTGGG 62.418 66.667 28.98 9.93 0.00 4.12
306 307 4.966787 ACGCCGGCACATTTGGGT 62.967 61.111 28.98 10.68 0.00 4.51
307 308 4.114997 CGCCGGCACATTTGGGTC 62.115 66.667 28.98 0.00 0.00 4.46
310 311 4.114997 CGGCACATTTGGGTCGGC 62.115 66.667 0.00 0.00 43.82 5.54
311 312 3.758931 GGCACATTTGGGTCGGCC 61.759 66.667 0.00 0.00 0.00 6.13
312 313 2.676471 GCACATTTGGGTCGGCCT 60.676 61.111 5.77 0.00 34.45 5.19
313 314 2.700773 GCACATTTGGGTCGGCCTC 61.701 63.158 5.77 0.00 34.45 4.70
314 315 2.046285 CACATTTGGGTCGGCCTCC 61.046 63.158 5.77 2.82 34.45 4.30
315 316 2.440247 CATTTGGGTCGGCCTCCC 60.440 66.667 21.54 21.54 44.81 4.30
316 317 3.739613 ATTTGGGTCGGCCTCCCC 61.740 66.667 24.16 21.11 44.00 4.81
331 332 3.508840 CCCGTTGGGCGATCAAGC 61.509 66.667 0.00 0.00 44.77 4.01
332 333 2.745884 CCGTTGGGCGATCAAGCA 60.746 61.111 0.00 0.00 44.77 3.91
333 334 2.753966 CCGTTGGGCGATCAAGCAG 61.754 63.158 0.00 0.00 44.77 4.24
334 335 1.741401 CGTTGGGCGATCAAGCAGA 60.741 57.895 0.00 0.00 44.77 4.26
335 336 1.796796 GTTGGGCGATCAAGCAGAC 59.203 57.895 0.00 0.00 39.27 3.51
336 337 1.377202 TTGGGCGATCAAGCAGACC 60.377 57.895 0.00 0.00 39.27 3.85
337 338 2.514824 GGGCGATCAAGCAGACCC 60.515 66.667 0.00 0.00 39.27 4.46
338 339 2.268920 GGCGATCAAGCAGACCCA 59.731 61.111 0.00 0.00 39.27 4.51
339 340 1.153086 GGCGATCAAGCAGACCCAT 60.153 57.895 0.00 0.00 39.27 4.00
340 341 0.749454 GGCGATCAAGCAGACCCATT 60.749 55.000 0.00 0.00 39.27 3.16
341 342 1.098050 GCGATCAAGCAGACCCATTT 58.902 50.000 0.00 0.00 37.05 2.32
342 343 1.474077 GCGATCAAGCAGACCCATTTT 59.526 47.619 0.00 0.00 37.05 1.82
343 344 2.682856 GCGATCAAGCAGACCCATTTTA 59.317 45.455 0.00 0.00 37.05 1.52
344 345 3.128589 GCGATCAAGCAGACCCATTTTAA 59.871 43.478 0.00 0.00 37.05 1.52
345 346 4.380444 GCGATCAAGCAGACCCATTTTAAA 60.380 41.667 0.00 0.00 37.05 1.52
346 347 5.708948 CGATCAAGCAGACCCATTTTAAAA 58.291 37.500 2.51 2.51 0.00 1.52
347 348 6.332630 CGATCAAGCAGACCCATTTTAAAAT 58.667 36.000 7.64 7.64 0.00 1.82
348 349 6.254157 CGATCAAGCAGACCCATTTTAAAATG 59.746 38.462 27.09 27.09 44.12 2.32
349 350 5.237048 TCAAGCAGACCCATTTTAAAATGC 58.763 37.500 28.17 20.12 43.38 3.56
350 351 3.848726 AGCAGACCCATTTTAAAATGCG 58.151 40.909 28.17 23.73 43.38 4.73
351 352 2.929398 GCAGACCCATTTTAAAATGCGG 59.071 45.455 28.17 28.42 43.38 5.69
352 353 3.367910 GCAGACCCATTTTAAAATGCGGA 60.368 43.478 32.81 6.49 43.38 5.54
353 354 4.173256 CAGACCCATTTTAAAATGCGGAC 58.827 43.478 32.81 28.95 43.38 4.79
354 355 3.119637 AGACCCATTTTAAAATGCGGACG 60.120 43.478 32.81 21.59 43.38 4.79
355 356 2.559231 ACCCATTTTAAAATGCGGACGT 59.441 40.909 32.81 21.44 43.38 4.34
356 357 2.920490 CCCATTTTAAAATGCGGACGTG 59.080 45.455 28.17 16.08 43.38 4.49
357 358 2.344142 CCATTTTAAAATGCGGACGTGC 59.656 45.455 28.17 0.00 43.38 5.34
381 382 3.451894 GCCTGGCCGACCCAAATG 61.452 66.667 7.66 0.00 44.81 2.32
382 383 2.755469 CCTGGCCGACCCAAATGG 60.755 66.667 0.00 0.00 44.81 3.16
383 384 2.354729 CTGGCCGACCCAAATGGA 59.645 61.111 0.00 0.00 44.81 3.41
384 385 2.034999 TGGCCGACCCAAATGGAC 59.965 61.111 0.00 0.00 41.82 4.02
385 386 2.034999 GGCCGACCCAAATGGACA 59.965 61.111 0.00 0.00 37.39 4.02
386 387 1.605165 GGCCGACCCAAATGGACAA 60.605 57.895 0.00 0.00 37.39 3.18
387 388 1.182385 GGCCGACCCAAATGGACAAA 61.182 55.000 0.00 0.00 37.39 2.83
388 389 0.676736 GCCGACCCAAATGGACAAAA 59.323 50.000 0.00 0.00 37.39 2.44
389 390 1.069358 GCCGACCCAAATGGACAAAAA 59.931 47.619 0.00 0.00 37.39 1.94
390 391 2.866065 GCCGACCCAAATGGACAAAAAG 60.866 50.000 0.00 0.00 37.39 2.27
391 392 2.403259 CGACCCAAATGGACAAAAAGC 58.597 47.619 0.00 0.00 37.39 3.51
392 393 2.403259 GACCCAAATGGACAAAAAGCG 58.597 47.619 0.00 0.00 37.39 4.68
393 394 1.069978 ACCCAAATGGACAAAAAGCGG 59.930 47.619 0.00 0.00 37.39 5.52
394 395 1.342819 CCCAAATGGACAAAAAGCGGA 59.657 47.619 0.00 0.00 37.39 5.54
395 396 2.403259 CCAAATGGACAAAAAGCGGAC 58.597 47.619 0.00 0.00 37.39 4.79
396 397 2.223923 CCAAATGGACAAAAAGCGGACA 60.224 45.455 0.00 0.00 37.39 4.02
397 398 3.452474 CAAATGGACAAAAAGCGGACAA 58.548 40.909 0.00 0.00 0.00 3.18
398 399 3.810310 AATGGACAAAAAGCGGACAAA 57.190 38.095 0.00 0.00 0.00 2.83
399 400 2.861462 TGGACAAAAAGCGGACAAAG 57.139 45.000 0.00 0.00 0.00 2.77
400 401 1.202359 TGGACAAAAAGCGGACAAAGC 60.202 47.619 0.00 0.00 0.00 3.51
401 402 1.120437 GACAAAAAGCGGACAAAGCG 58.880 50.000 0.00 0.00 40.04 4.68
402 403 0.869880 ACAAAAAGCGGACAAAGCGC 60.870 50.000 0.00 0.00 40.04 5.92
403 404 1.657181 AAAAAGCGGACAAAGCGCG 60.657 52.632 0.00 0.00 40.04 6.86
404 405 2.331019 AAAAAGCGGACAAAGCGCGT 62.331 50.000 8.43 0.00 40.04 6.01
405 406 2.982038 AAAAGCGGACAAAGCGCGTG 62.982 55.000 8.43 11.94 40.04 5.34
407 408 4.719616 GCGGACAAAGCGCGTGTC 62.720 66.667 28.65 28.65 43.87 3.67
410 411 3.335534 GACAAAGCGCGTGTCCGT 61.336 61.111 27.20 10.86 39.62 4.69
411 412 2.877974 GACAAAGCGCGTGTCCGTT 61.878 57.895 27.20 3.19 39.62 4.44
412 413 2.326550 CAAAGCGCGTGTCCGTTT 59.673 55.556 8.43 0.00 36.15 3.60
413 414 2.003443 CAAAGCGCGTGTCCGTTTG 61.003 57.895 8.43 1.22 36.15 2.93
414 415 3.175976 AAAGCGCGTGTCCGTTTGG 62.176 57.895 8.43 0.00 36.15 3.28
417 418 3.708734 CGCGTGTCCGTTTGGGTC 61.709 66.667 0.00 0.00 37.00 4.46
418 419 3.708734 GCGTGTCCGTTTGGGTCG 61.709 66.667 0.00 0.00 37.00 4.79
419 420 3.708734 CGTGTCCGTTTGGGTCGC 61.709 66.667 0.00 0.00 37.00 5.19
420 421 3.351416 GTGTCCGTTTGGGTCGCC 61.351 66.667 0.00 0.00 37.00 5.54
421 422 4.629523 TGTCCGTTTGGGTCGCCC 62.630 66.667 7.87 7.87 45.71 6.13
431 432 2.355115 GGTCGCCCCATTGGAGTT 59.645 61.111 3.62 0.00 35.07 3.01
432 433 2.046285 GGTCGCCCCATTGGAGTTG 61.046 63.158 3.62 0.00 35.07 3.16
433 434 2.361104 TCGCCCCATTGGAGTTGC 60.361 61.111 3.62 0.53 35.07 4.17
434 435 2.361610 CGCCCCATTGGAGTTGCT 60.362 61.111 3.62 0.00 35.39 3.91
435 436 2.409870 CGCCCCATTGGAGTTGCTC 61.410 63.158 3.62 0.00 35.39 4.26
436 437 1.000396 GCCCCATTGGAGTTGCTCT 60.000 57.895 3.62 0.00 35.39 4.09
437 438 1.034292 GCCCCATTGGAGTTGCTCTC 61.034 60.000 3.62 1.79 42.07 3.20
438 439 0.329261 CCCCATTGGAGTTGCTCTCA 59.671 55.000 3.62 0.00 44.40 3.27
439 440 1.272092 CCCCATTGGAGTTGCTCTCAA 60.272 52.381 3.62 0.00 44.40 3.02
455 456 4.201930 GCTCTCAACGTATAGCTAGTGTGT 60.202 45.833 0.00 0.00 32.18 3.72
550 564 3.440872 AGCAACAGACGGTAACAACAAAA 59.559 39.130 0.00 0.00 0.00 2.44
554 568 3.375922 ACAGACGGTAACAACAAAACCAG 59.624 43.478 0.00 0.00 32.55 4.00
565 579 0.523072 CAAAACCAGCATCAGGTCCG 59.477 55.000 0.00 0.00 38.76 4.79
576 591 2.603776 AGGTCCGTCCACTCCACC 60.604 66.667 0.00 0.00 39.02 4.61
585 600 3.706373 CACTCCACCCCGTCCAGG 61.706 72.222 0.00 0.00 40.63 4.45
682 697 2.656069 TACCTCGTGCCTTGCTCCC 61.656 63.158 0.00 0.00 0.00 4.30
683 698 3.710722 CCTCGTGCCTTGCTCCCT 61.711 66.667 0.00 0.00 0.00 4.20
684 699 2.125350 CTCGTGCCTTGCTCCCTC 60.125 66.667 0.00 0.00 0.00 4.30
685 700 2.922503 TCGTGCCTTGCTCCCTCA 60.923 61.111 0.00 0.00 0.00 3.86
686 701 2.743928 CGTGCCTTGCTCCCTCAC 60.744 66.667 0.00 0.00 0.00 3.51
687 702 2.360475 GTGCCTTGCTCCCTCACC 60.360 66.667 0.00 0.00 0.00 4.02
931 952 2.852495 CTTGCTGATACGGCGGTGGT 62.852 60.000 13.24 0.00 38.82 4.16
972 993 1.065109 GGACGTTGGTGTGGTTTGC 59.935 57.895 0.00 0.00 0.00 3.68
1411 1432 0.605319 TGGCCCAGACGAAACACATC 60.605 55.000 0.00 0.00 0.00 3.06
1549 1574 0.994050 ATTGGGGGAAGTAGGGGAGC 60.994 60.000 0.00 0.00 0.00 4.70
1551 1576 1.766864 GGGGGAAGTAGGGGAGCTC 60.767 68.421 4.71 4.71 0.00 4.09
1645 1670 0.968405 GAGCAGGTTTTCCAATGGCA 59.032 50.000 0.00 0.00 43.73 4.92
1649 1674 1.001181 CAGGTTTTCCAATGGCACCAG 59.999 52.381 14.80 5.77 43.73 4.00
1654 1679 1.139498 TTCCAATGGCACCAGGGAGA 61.139 55.000 11.43 3.32 35.65 3.71
1662 1687 1.381872 CACCAGGGAGATCCGTCCT 60.382 63.158 1.35 0.00 41.52 3.85
1773 1798 4.314440 GTGGTGCTCTGCCGTGGA 62.314 66.667 0.00 0.00 0.00 4.02
1782 1807 4.344865 TGCCGTGGAAAGGAGCCC 62.345 66.667 0.00 0.00 37.88 5.19
1850 1875 6.313905 TGCTCAGCTAAGTTTATCTGTTAAGC 59.686 38.462 0.00 7.44 30.93 3.09
1875 1900 7.922278 GCCAAATTGTATCTGATTATGCTTTCA 59.078 33.333 0.00 0.00 0.00 2.69
1970 1995 5.163550 TGGTTATCGTGTCTCTGGTATTCTG 60.164 44.000 0.00 0.00 0.00 3.02
2026 2051 2.374184 TGCACGCCCAAGCTTATTATT 58.626 42.857 0.00 0.00 36.60 1.40
2082 2107 2.754946 AGCCATGTTTGGAATGCAAG 57.245 45.000 0.00 0.00 46.92 4.01
2094 2119 7.232534 TGTTTGGAATGCAAGTAAGGTCTTAAT 59.767 33.333 0.00 0.00 0.00 1.40
2135 2161 2.832129 ACACGAGTCCCAACATGACTAT 59.168 45.455 0.00 0.00 42.94 2.12
2196 2233 3.678965 AGGAGGCATCTCTCTGTAAGA 57.321 47.619 0.00 0.00 43.34 2.10
2198 2235 4.555689 AGGAGGCATCTCTCTGTAAGATT 58.444 43.478 0.00 0.00 45.62 2.40
2251 2292 5.373222 ACAAGCTTGTACAAGGACATGTTA 58.627 37.500 30.25 0.00 40.16 2.41
2257 2298 9.243105 AGCTTGTACAAGGACATGTTATAAAAT 57.757 29.630 31.42 0.00 38.80 1.82
2267 2308 8.028938 AGGACATGTTATAAAATTGTTCAGCAC 58.971 33.333 0.00 0.00 0.00 4.40
2337 2379 7.249715 AGATAGTTGTAGGTCTAGGCCATATT 58.750 38.462 17.52 0.00 0.00 1.28
2389 2431 6.199154 GTCAGTAAGTGATGATACATGAACCG 59.801 42.308 0.00 0.00 37.56 4.44
2415 2459 4.414846 AGGAGCCTATCAAACCATCAATCT 59.585 41.667 0.00 0.00 0.00 2.40
2416 2460 4.518211 GGAGCCTATCAAACCATCAATCTG 59.482 45.833 0.00 0.00 0.00 2.90
2494 2546 4.039973 CACCTAAGTCTTTGGTACTGGACA 59.960 45.833 16.93 0.00 32.13 4.02
2529 2581 5.984926 ACATTAAACTGAATTTGTGCCACAG 59.015 36.000 0.00 0.00 35.14 3.66
2609 2677 6.169094 TGAGGTCAGATGTTTCTTTCAGATC 58.831 40.000 0.00 0.00 0.00 2.75
2764 2857 7.612677 AGTTTAGTCTGTGTTCCTCGATTATT 58.387 34.615 0.00 0.00 0.00 1.40
2801 2894 2.274542 GGAAAAATTTGGGGATGGGGT 58.725 47.619 0.00 0.00 0.00 4.95
2831 2924 8.873830 AGTTGTCAGTGAACTTAAATATGATCG 58.126 33.333 0.00 0.00 28.94 3.69
2865 2958 5.628797 TTGGATTAGGATGCTGATGTACA 57.371 39.130 0.00 0.00 0.00 2.90
2872 2965 5.894298 AGGATGCTGATGTACATAAGGAA 57.106 39.130 17.56 2.36 0.00 3.36
2925 3018 6.273965 AGGAACAAAGGTACCCTGTATACTTT 59.726 38.462 15.72 2.20 32.13 2.66
2971 3064 4.631131 TCTGGTAGTTGTGAATGTGTCAG 58.369 43.478 0.00 0.00 36.74 3.51
3015 3108 8.378172 TGGATATTAGTTGCACTTGTTATAGC 57.622 34.615 0.00 0.00 0.00 2.97
3016 3109 8.210946 TGGATATTAGTTGCACTTGTTATAGCT 58.789 33.333 0.00 0.00 0.00 3.32
3017 3110 8.499162 GGATATTAGTTGCACTTGTTATAGCTG 58.501 37.037 0.00 0.00 0.00 4.24
3018 3111 5.545658 TTAGTTGCACTTGTTATAGCTGC 57.454 39.130 0.00 0.00 0.00 5.25
3019 3112 3.679389 AGTTGCACTTGTTATAGCTGCT 58.321 40.909 7.57 7.57 0.00 4.24
3020 3113 4.832248 AGTTGCACTTGTTATAGCTGCTA 58.168 39.130 12.40 12.40 0.00 3.49
3021 3114 4.872691 AGTTGCACTTGTTATAGCTGCTAG 59.127 41.667 15.41 4.46 0.00 3.42
3022 3115 4.471904 TGCACTTGTTATAGCTGCTAGT 57.528 40.909 15.41 5.12 0.00 2.57
3120 3224 4.848562 AAACTAAGCAGTTAAACCAGCC 57.151 40.909 0.00 0.00 44.41 4.85
3125 3229 6.187682 ACTAAGCAGTTAAACCAGCCATTAT 58.812 36.000 0.00 0.00 0.00 1.28
3128 3232 5.264395 AGCAGTTAAACCAGCCATTATTCT 58.736 37.500 0.00 0.00 0.00 2.40
3139 3243 2.431782 GCCATTATTCTGTGCATGGGTT 59.568 45.455 0.00 0.00 37.29 4.11
3140 3244 3.636300 GCCATTATTCTGTGCATGGGTTA 59.364 43.478 0.00 0.00 37.29 2.85
3141 3245 4.261741 GCCATTATTCTGTGCATGGGTTAG 60.262 45.833 0.00 0.00 37.29 2.34
3142 3246 4.261741 CCATTATTCTGTGCATGGGTTAGC 60.262 45.833 0.00 0.00 33.70 3.09
3143 3247 1.382522 ATTCTGTGCATGGGTTAGCG 58.617 50.000 0.00 0.00 0.00 4.26
3144 3248 0.036164 TTCTGTGCATGGGTTAGCGT 59.964 50.000 0.00 0.00 0.00 5.07
3145 3249 0.391130 TCTGTGCATGGGTTAGCGTC 60.391 55.000 0.00 0.00 0.00 5.19
3146 3250 0.391661 CTGTGCATGGGTTAGCGTCT 60.392 55.000 0.00 0.00 0.00 4.18
3147 3251 0.673333 TGTGCATGGGTTAGCGTCTG 60.673 55.000 0.00 0.00 0.00 3.51
3148 3252 0.673644 GTGCATGGGTTAGCGTCTGT 60.674 55.000 0.00 0.00 0.00 3.41
3149 3253 0.673333 TGCATGGGTTAGCGTCTGTG 60.673 55.000 0.00 0.00 0.00 3.66
3150 3254 0.673644 GCATGGGTTAGCGTCTGTGT 60.674 55.000 0.00 0.00 0.00 3.72
3194 3298 1.388547 TACAGCGGAAATGGCCAATC 58.611 50.000 10.96 11.84 0.00 2.67
3195 3299 1.064621 CAGCGGAAATGGCCAATCG 59.935 57.895 10.96 12.70 0.00 3.34
3401 3505 1.283736 ATAACGACGGTGCGAATTCC 58.716 50.000 0.00 0.00 34.83 3.01
3431 3535 0.035820 GCGAACCCACTATGAACCCA 60.036 55.000 0.00 0.00 0.00 4.51
3555 3659 4.083565 GACCAAGGGCAAAACCTAACATA 58.916 43.478 0.00 0.00 40.87 2.29
3630 3740 2.192861 CCCTTGCAAGAACGGCACA 61.193 57.895 28.05 0.00 41.75 4.57
3719 3829 3.935203 CGATAATCTGATGTATGGGGTGC 59.065 47.826 0.00 0.00 0.00 5.01
3761 3871 2.334977 CCCCCTTAGCCTTTTGGTTTT 58.665 47.619 0.00 0.00 42.99 2.43
3881 3991 6.149633 TGATATGATCGTCGGAAGTTACATG 58.850 40.000 0.00 0.00 0.00 3.21
3935 4045 6.638610 CCTTCCTCTGATCATCATATGTACC 58.361 44.000 1.90 0.00 0.00 3.34
3937 4047 5.908590 TCCTCTGATCATCATATGTACCCT 58.091 41.667 1.90 0.00 0.00 4.34
3938 4048 5.718607 TCCTCTGATCATCATATGTACCCTG 59.281 44.000 1.90 0.00 0.00 4.45
3943 4055 8.933653 TCTGATCATCATATGTACCCTGTTTTA 58.066 33.333 1.90 0.00 0.00 1.52
3989 4101 5.953548 TGGATGTTGATGAAAATGTCCTGAT 59.046 36.000 0.00 0.00 0.00 2.90
4011 4123 3.706594 TCTTCTGCATGGTTACCCTCTAG 59.293 47.826 0.00 0.00 0.00 2.43
4024 4136 3.118531 ACCCTCTAGATGGCTGAATGTT 58.881 45.455 13.53 0.00 0.00 2.71
4116 4228 4.636206 CAGTCCTGGGCTAACTGTTTAATC 59.364 45.833 0.00 0.00 36.50 1.75
4117 4229 4.536489 AGTCCTGGGCTAACTGTTTAATCT 59.464 41.667 0.00 0.00 0.00 2.40
4201 4316 2.159476 GCTGCAATCGACATCACACATT 60.159 45.455 0.00 0.00 0.00 2.71
4228 4343 1.601903 TCAAACGGCACATGACTTGTC 59.398 47.619 0.00 0.00 36.00 3.18
4362 4477 6.650390 GCAAAAAGCTCATTTAAAGGGATCAA 59.350 34.615 0.00 0.00 41.15 2.57
4365 4480 6.916360 AAGCTCATTTAAAGGGATCAACAA 57.084 33.333 0.00 0.00 0.00 2.83
4400 4515 9.616156 TCTCTCCGTCCTATAATATAAGATGTC 57.384 37.037 0.00 0.00 0.00 3.06
4423 4538 9.942850 TGTCATTACAATCAATGTAGAGAAAGA 57.057 29.630 0.00 0.00 45.00 2.52
4568 4693 5.373812 AGAGAAAAGGTGAAGACTCCAAA 57.626 39.130 0.00 0.00 32.71 3.28
4588 4713 5.699839 CAAAAGAAGGTATTTTGGGACGAG 58.300 41.667 0.00 0.00 41.69 4.18
4707 4834 4.124238 TCCCAGTAAAAGAGACAACGTTG 58.876 43.478 26.20 26.20 0.00 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.071837 TCGCCTGGTACGATGCCA 61.072 61.111 0.00 0.00 33.96 4.92
19 20 2.585247 GTCGCCTGGTACGATGCC 60.585 66.667 0.00 0.00 42.26 4.40
20 21 2.954868 CGTCGCCTGGTACGATGC 60.955 66.667 15.67 0.00 42.26 3.91
22 23 1.138247 GAACGTCGCCTGGTACGAT 59.862 57.895 23.98 15.63 42.26 3.73
23 24 2.562912 GAACGTCGCCTGGTACGA 59.437 61.111 23.98 10.82 41.55 3.43
24 25 2.872925 CGAACGTCGCCTGGTACG 60.873 66.667 18.09 18.09 44.47 3.67
25 26 2.505557 CCGAACGTCGCCTGGTAC 60.506 66.667 0.00 0.00 38.82 3.34
26 27 3.751246 CCCGAACGTCGCCTGGTA 61.751 66.667 0.00 0.00 38.82 3.25
50 51 4.475135 GAAGACCGGAGCAGGGCC 62.475 72.222 9.46 0.00 41.33 5.80
51 52 2.932130 GATGAAGACCGGAGCAGGGC 62.932 65.000 9.46 0.00 40.48 5.19
52 53 1.144936 GATGAAGACCGGAGCAGGG 59.855 63.158 9.46 0.00 35.02 4.45
53 54 1.227089 CGATGAAGACCGGAGCAGG 60.227 63.158 9.46 0.00 37.30 4.85
54 55 0.526524 GTCGATGAAGACCGGAGCAG 60.527 60.000 9.46 0.00 35.22 4.24
55 56 1.511305 GTCGATGAAGACCGGAGCA 59.489 57.895 9.46 0.00 35.22 4.26
56 57 4.403976 GTCGATGAAGACCGGAGC 57.596 61.111 9.46 0.00 35.22 4.70
62 63 0.809385 TCGGTGAGGTCGATGAAGAC 59.191 55.000 0.00 0.00 40.25 3.01
63 64 0.809385 GTCGGTGAGGTCGATGAAGA 59.191 55.000 0.00 0.00 38.93 2.87
64 65 0.523546 CGTCGGTGAGGTCGATGAAG 60.524 60.000 0.00 0.00 43.83 3.02
65 66 0.956902 TCGTCGGTGAGGTCGATGAA 60.957 55.000 6.01 0.00 45.76 2.57
66 67 1.376295 TCGTCGGTGAGGTCGATGA 60.376 57.895 4.56 4.56 46.30 2.92
67 68 1.226323 GTCGTCGGTGAGGTCGATG 60.226 63.158 0.00 0.00 42.86 3.84
68 69 2.747822 CGTCGTCGGTGAGGTCGAT 61.748 63.158 0.00 0.00 38.93 3.59
69 70 3.417224 CGTCGTCGGTGAGGTCGA 61.417 66.667 0.00 0.00 32.80 4.20
88 89 4.814294 CCCTTTCCCTCGACGCCG 62.814 72.222 0.00 0.00 37.07 6.46
90 91 3.894547 TTGCCCTTTCCCTCGACGC 62.895 63.158 0.00 0.00 0.00 5.19
91 92 1.741770 CTTGCCCTTTCCCTCGACG 60.742 63.158 0.00 0.00 0.00 5.12
92 93 1.377333 CCTTGCCCTTTCCCTCGAC 60.377 63.158 0.00 0.00 0.00 4.20
93 94 2.602676 CCCTTGCCCTTTCCCTCGA 61.603 63.158 0.00 0.00 0.00 4.04
94 95 2.044946 CCCTTGCCCTTTCCCTCG 60.045 66.667 0.00 0.00 0.00 4.63
95 96 2.363018 GCCCTTGCCCTTTCCCTC 60.363 66.667 0.00 0.00 0.00 4.30
96 97 2.736830 CTTGCCCTTGCCCTTTCCCT 62.737 60.000 0.00 0.00 36.33 4.20
97 98 2.203773 TTGCCCTTGCCCTTTCCC 60.204 61.111 0.00 0.00 36.33 3.97
98 99 2.285773 CCTTGCCCTTGCCCTTTCC 61.286 63.158 0.00 0.00 36.33 3.13
99 100 2.947532 GCCTTGCCCTTGCCCTTTC 61.948 63.158 0.00 0.00 36.33 2.62
100 101 2.924635 GCCTTGCCCTTGCCCTTT 60.925 61.111 0.00 0.00 36.33 3.11
116 117 4.549516 GCCCTAGACGTCGTCGGC 62.550 72.222 21.69 21.69 46.75 5.54
117 118 3.109612 CTGCCCTAGACGTCGTCGG 62.110 68.421 19.11 15.24 41.85 4.79
118 119 2.396955 ACTGCCCTAGACGTCGTCG 61.397 63.158 19.11 6.52 37.67 5.12
119 120 1.136984 CACTGCCCTAGACGTCGTC 59.863 63.158 17.70 17.70 0.00 4.20
120 121 1.602888 ACACTGCCCTAGACGTCGT 60.603 57.895 10.46 0.00 0.00 4.34
121 122 1.154016 CACACTGCCCTAGACGTCG 60.154 63.158 10.46 0.00 0.00 5.12
122 123 1.446272 GCACACTGCCCTAGACGTC 60.446 63.158 7.70 7.70 37.42 4.34
123 124 2.657237 GCACACTGCCCTAGACGT 59.343 61.111 0.00 0.00 37.42 4.34
124 125 2.507102 CGCACACTGCCCTAGACG 60.507 66.667 0.00 0.00 41.12 4.18
125 126 2.125512 CCGCACACTGCCCTAGAC 60.126 66.667 0.00 0.00 41.12 2.59
126 127 3.390521 CCCGCACACTGCCCTAGA 61.391 66.667 0.00 0.00 41.12 2.43
127 128 4.473520 CCCCGCACACTGCCCTAG 62.474 72.222 0.00 0.00 41.12 3.02
152 153 4.643387 AAAAGTCTGCGCCCGCCT 62.643 61.111 4.18 0.00 41.09 5.52
153 154 3.670377 AAAAAGTCTGCGCCCGCC 61.670 61.111 4.18 0.00 41.09 6.13
183 184 9.762381 AGTCCACCTAAATCCAATAAACATTAA 57.238 29.630 0.00 0.00 0.00 1.40
184 185 9.762381 AAGTCCACCTAAATCCAATAAACATTA 57.238 29.630 0.00 0.00 0.00 1.90
185 186 8.664669 AAGTCCACCTAAATCCAATAAACATT 57.335 30.769 0.00 0.00 0.00 2.71
186 187 8.531146 CAAAGTCCACCTAAATCCAATAAACAT 58.469 33.333 0.00 0.00 0.00 2.71
187 188 7.039363 CCAAAGTCCACCTAAATCCAATAAACA 60.039 37.037 0.00 0.00 0.00 2.83
188 189 7.320399 CCAAAGTCCACCTAAATCCAATAAAC 58.680 38.462 0.00 0.00 0.00 2.01
189 190 6.071051 GCCAAAGTCCACCTAAATCCAATAAA 60.071 38.462 0.00 0.00 0.00 1.40
190 191 5.420739 GCCAAAGTCCACCTAAATCCAATAA 59.579 40.000 0.00 0.00 0.00 1.40
191 192 4.953579 GCCAAAGTCCACCTAAATCCAATA 59.046 41.667 0.00 0.00 0.00 1.90
192 193 3.769300 GCCAAAGTCCACCTAAATCCAAT 59.231 43.478 0.00 0.00 0.00 3.16
193 194 3.161866 GCCAAAGTCCACCTAAATCCAA 58.838 45.455 0.00 0.00 0.00 3.53
194 195 2.556559 GGCCAAAGTCCACCTAAATCCA 60.557 50.000 0.00 0.00 0.00 3.41
195 196 2.100197 GGCCAAAGTCCACCTAAATCC 58.900 52.381 0.00 0.00 0.00 3.01
196 197 1.743394 CGGCCAAAGTCCACCTAAATC 59.257 52.381 2.24 0.00 0.00 2.17
197 198 1.615919 CCGGCCAAAGTCCACCTAAAT 60.616 52.381 2.24 0.00 0.00 1.40
198 199 0.250989 CCGGCCAAAGTCCACCTAAA 60.251 55.000 2.24 0.00 0.00 1.85
199 200 1.377229 CCGGCCAAAGTCCACCTAA 59.623 57.895 2.24 0.00 0.00 2.69
200 201 3.074281 CCGGCCAAAGTCCACCTA 58.926 61.111 2.24 0.00 0.00 3.08
201 202 4.660938 GCCGGCCAAAGTCCACCT 62.661 66.667 18.11 0.00 0.00 4.00
204 205 4.572571 AACGCCGGCCAAAGTCCA 62.573 61.111 23.46 0.00 0.00 4.02
205 206 3.292159 AAACGCCGGCCAAAGTCC 61.292 61.111 23.46 0.00 0.00 3.85
206 207 2.050442 CAAACGCCGGCCAAAGTC 60.050 61.111 23.46 0.00 0.00 3.01
207 208 2.517402 TCAAACGCCGGCCAAAGT 60.517 55.556 23.46 10.32 0.00 2.66
208 209 2.050442 GTCAAACGCCGGCCAAAG 60.050 61.111 23.46 9.53 0.00 2.77
209 210 3.597728 GGTCAAACGCCGGCCAAA 61.598 61.111 23.46 0.00 0.00 3.28
217 218 1.508808 TAAAGTGGCCGGTCAAACGC 61.509 55.000 12.16 0.00 0.00 4.84
218 219 1.135803 CATAAAGTGGCCGGTCAAACG 60.136 52.381 12.16 0.00 0.00 3.60
219 220 1.883926 ACATAAAGTGGCCGGTCAAAC 59.116 47.619 12.16 0.00 0.00 2.93
220 221 2.279935 ACATAAAGTGGCCGGTCAAA 57.720 45.000 12.16 0.00 0.00 2.69
221 222 2.279935 AACATAAAGTGGCCGGTCAA 57.720 45.000 12.16 0.00 0.00 3.18
222 223 2.279935 AAACATAAAGTGGCCGGTCA 57.720 45.000 3.51 3.51 0.00 4.02
223 224 4.976224 ATTAAACATAAAGTGGCCGGTC 57.024 40.909 0.00 0.00 0.00 4.79
224 225 6.378848 ACATAATTAAACATAAAGTGGCCGGT 59.621 34.615 1.90 0.00 0.00 5.28
225 226 6.801575 ACATAATTAAACATAAAGTGGCCGG 58.198 36.000 0.00 0.00 0.00 6.13
226 227 8.696410 AAACATAATTAAACATAAAGTGGCCG 57.304 30.769 0.00 0.00 0.00 6.13
251 252 9.900710 ACAAGTTGCACGAAATAAACATAAATA 57.099 25.926 1.81 0.00 0.00 1.40
252 253 8.810652 ACAAGTTGCACGAAATAAACATAAAT 57.189 26.923 1.81 0.00 0.00 1.40
253 254 8.635877 AACAAGTTGCACGAAATAAACATAAA 57.364 26.923 1.81 0.00 0.00 1.40
254 255 8.535592 CAAACAAGTTGCACGAAATAAACATAA 58.464 29.630 1.81 0.00 0.00 1.90
255 256 7.702772 ACAAACAAGTTGCACGAAATAAACATA 59.297 29.630 1.81 0.00 41.31 2.29
256 257 6.533367 ACAAACAAGTTGCACGAAATAAACAT 59.467 30.769 1.81 0.00 41.31 2.71
257 258 5.864474 ACAAACAAGTTGCACGAAATAAACA 59.136 32.000 1.81 0.00 41.31 2.83
258 259 6.325849 ACAAACAAGTTGCACGAAATAAAC 57.674 33.333 1.81 0.00 41.31 2.01
259 260 6.952935 AACAAACAAGTTGCACGAAATAAA 57.047 29.167 1.81 0.00 41.31 1.40
260 261 6.952935 AAACAAACAAGTTGCACGAAATAA 57.047 29.167 1.81 0.00 41.31 1.40
261 262 6.952935 AAAACAAACAAGTTGCACGAAATA 57.047 29.167 1.81 0.00 41.31 1.40
262 263 5.854431 AAAACAAACAAGTTGCACGAAAT 57.146 30.435 1.81 0.00 41.31 2.17
263 264 5.659048 AAAAACAAACAAGTTGCACGAAA 57.341 30.435 1.81 0.00 41.31 3.46
283 284 0.103208 AAATGTGCCGGCGTGAAAAA 59.897 45.000 23.90 0.00 0.00 1.94
284 285 0.596083 CAAATGTGCCGGCGTGAAAA 60.596 50.000 23.90 0.00 0.00 2.29
285 286 1.007964 CAAATGTGCCGGCGTGAAA 60.008 52.632 23.90 5.28 0.00 2.69
286 287 2.642129 CAAATGTGCCGGCGTGAA 59.358 55.556 23.90 7.35 0.00 3.18
287 288 3.361158 CCAAATGTGCCGGCGTGA 61.361 61.111 23.90 8.30 0.00 4.35
288 289 4.418401 CCCAAATGTGCCGGCGTG 62.418 66.667 23.90 13.89 0.00 5.34
289 290 4.966787 ACCCAAATGTGCCGGCGT 62.967 61.111 23.90 7.85 0.00 5.68
290 291 4.114997 GACCCAAATGTGCCGGCG 62.115 66.667 23.90 7.09 0.00 6.46
291 292 4.114997 CGACCCAAATGTGCCGGC 62.115 66.667 22.73 22.73 0.00 6.13
292 293 3.439540 CCGACCCAAATGTGCCGG 61.440 66.667 0.00 0.00 0.00 6.13
293 294 4.114997 GCCGACCCAAATGTGCCG 62.115 66.667 0.00 0.00 0.00 5.69
294 295 3.758931 GGCCGACCCAAATGTGCC 61.759 66.667 0.00 0.00 0.00 5.01
295 296 2.676471 AGGCCGACCCAAATGTGC 60.676 61.111 0.00 0.00 36.11 4.57
296 297 2.046285 GGAGGCCGACCCAAATGTG 61.046 63.158 10.32 0.00 36.11 3.21
297 298 2.355115 GGAGGCCGACCCAAATGT 59.645 61.111 10.32 0.00 36.11 2.71
298 299 2.440247 GGGAGGCCGACCCAAATG 60.440 66.667 28.20 0.00 46.05 2.32
315 316 2.745884 TGCTTGATCGCCCAACGG 60.746 61.111 0.00 0.00 43.89 4.44
316 317 1.741401 TCTGCTTGATCGCCCAACG 60.741 57.895 0.00 0.00 45.62 4.10
317 318 1.648467 GGTCTGCTTGATCGCCCAAC 61.648 60.000 0.00 0.00 0.00 3.77
318 319 1.377202 GGTCTGCTTGATCGCCCAA 60.377 57.895 0.00 0.00 0.00 4.12
319 320 2.268920 GGTCTGCTTGATCGCCCA 59.731 61.111 0.00 0.00 0.00 5.36
320 321 2.514824 GGGTCTGCTTGATCGCCC 60.515 66.667 0.00 0.00 0.00 6.13
321 322 0.749454 AATGGGTCTGCTTGATCGCC 60.749 55.000 0.00 0.00 0.00 5.54
322 323 1.098050 AAATGGGTCTGCTTGATCGC 58.902 50.000 0.00 0.00 0.00 4.58
323 324 4.963276 TTAAAATGGGTCTGCTTGATCG 57.037 40.909 0.00 0.00 0.00 3.69
324 325 6.036408 GCATTTTAAAATGGGTCTGCTTGATC 59.964 38.462 31.89 13.91 44.54 2.92
325 326 5.876460 GCATTTTAAAATGGGTCTGCTTGAT 59.124 36.000 31.89 0.00 44.54 2.57
326 327 5.237048 GCATTTTAAAATGGGTCTGCTTGA 58.763 37.500 31.89 0.00 44.54 3.02
327 328 5.535043 GCATTTTAAAATGGGTCTGCTTG 57.465 39.130 31.89 12.85 44.54 4.01
336 337 2.344142 GCACGTCCGCATTTTAAAATGG 59.656 45.455 31.89 23.69 44.54 3.16
337 338 2.983136 TGCACGTCCGCATTTTAAAATG 59.017 40.909 28.85 28.85 46.55 2.32
338 339 2.983803 GTGCACGTCCGCATTTTAAAAT 59.016 40.909 7.64 7.64 45.26 1.82
339 340 2.386249 GTGCACGTCCGCATTTTAAAA 58.614 42.857 0.00 2.51 45.26 1.52
340 341 1.660614 CGTGCACGTCCGCATTTTAAA 60.661 47.619 30.50 0.00 45.26 1.52
341 342 0.110599 CGTGCACGTCCGCATTTTAA 60.111 50.000 30.50 0.00 45.26 1.52
342 343 1.493750 CGTGCACGTCCGCATTTTA 59.506 52.632 30.50 0.00 45.26 1.52
343 344 2.251075 CGTGCACGTCCGCATTTT 59.749 55.556 30.50 0.00 45.26 1.82
364 365 3.451894 CATTTGGGTCGGCCAGGC 61.452 66.667 9.07 1.26 36.17 4.85
365 366 2.755469 CCATTTGGGTCGGCCAGG 60.755 66.667 9.07 0.00 36.17 4.45
366 367 2.046285 GTCCATTTGGGTCGGCCAG 61.046 63.158 9.07 0.00 38.11 4.85
367 368 2.034999 GTCCATTTGGGTCGGCCA 59.965 61.111 9.07 0.00 38.11 5.36
368 369 1.182385 TTTGTCCATTTGGGTCGGCC 61.182 55.000 0.00 0.00 38.11 6.13
369 370 0.676736 TTTTGTCCATTTGGGTCGGC 59.323 50.000 0.00 0.00 38.11 5.54
370 371 2.866065 GCTTTTTGTCCATTTGGGTCGG 60.866 50.000 0.00 0.00 38.11 4.79
371 372 2.403259 GCTTTTTGTCCATTTGGGTCG 58.597 47.619 0.00 0.00 38.11 4.79
372 373 2.403259 CGCTTTTTGTCCATTTGGGTC 58.597 47.619 0.00 0.00 38.11 4.46
373 374 1.069978 CCGCTTTTTGTCCATTTGGGT 59.930 47.619 0.00 0.00 38.11 4.51
374 375 1.342819 TCCGCTTTTTGTCCATTTGGG 59.657 47.619 0.00 0.00 35.41 4.12
375 376 2.223923 TGTCCGCTTTTTGTCCATTTGG 60.224 45.455 0.00 0.00 0.00 3.28
376 377 3.090952 TGTCCGCTTTTTGTCCATTTG 57.909 42.857 0.00 0.00 0.00 2.32
377 378 3.810310 TTGTCCGCTTTTTGTCCATTT 57.190 38.095 0.00 0.00 0.00 2.32
378 379 3.716601 CTTTGTCCGCTTTTTGTCCATT 58.283 40.909 0.00 0.00 0.00 3.16
379 380 2.545742 GCTTTGTCCGCTTTTTGTCCAT 60.546 45.455 0.00 0.00 0.00 3.41
380 381 1.202359 GCTTTGTCCGCTTTTTGTCCA 60.202 47.619 0.00 0.00 0.00 4.02
381 382 1.487482 GCTTTGTCCGCTTTTTGTCC 58.513 50.000 0.00 0.00 0.00 4.02
382 383 1.120437 CGCTTTGTCCGCTTTTTGTC 58.880 50.000 0.00 0.00 0.00 3.18
383 384 3.250220 CGCTTTGTCCGCTTTTTGT 57.750 47.368 0.00 0.00 0.00 2.83
393 394 2.369477 AAACGGACACGCGCTTTGTC 62.369 55.000 23.74 23.74 46.04 3.18
394 395 2.466140 AAACGGACACGCGCTTTGT 61.466 52.632 5.73 10.96 46.04 2.83
395 396 2.003443 CAAACGGACACGCGCTTTG 61.003 57.895 5.73 4.91 46.04 2.77
396 397 2.326550 CAAACGGACACGCGCTTT 59.673 55.556 5.73 0.00 46.04 3.51
397 398 3.645975 CCAAACGGACACGCGCTT 61.646 61.111 5.73 0.00 46.04 4.68
400 401 3.708734 GACCCAAACGGACACGCG 61.709 66.667 3.53 3.53 46.04 6.01
401 402 3.708734 CGACCCAAACGGACACGC 61.709 66.667 0.00 0.00 46.04 5.34
403 404 3.351416 GGCGACCCAAACGGACAC 61.351 66.667 0.00 0.00 34.64 3.67
415 416 2.700773 GCAACTCCAATGGGGCGAC 61.701 63.158 0.00 0.00 36.21 5.19
416 417 2.361104 GCAACTCCAATGGGGCGA 60.361 61.111 0.00 0.00 36.21 5.54
417 418 2.361610 AGCAACTCCAATGGGGCG 60.362 61.111 0.00 0.00 36.21 6.13
418 419 1.000396 AGAGCAACTCCAATGGGGC 60.000 57.895 0.00 0.00 36.21 5.80
419 420 0.329261 TGAGAGCAACTCCAATGGGG 59.671 55.000 0.00 0.00 44.34 4.96
420 421 2.205022 TTGAGAGCAACTCCAATGGG 57.795 50.000 0.00 0.00 44.34 4.00
430 431 4.398358 ACACTAGCTATACGTTGAGAGCAA 59.602 41.667 7.62 0.00 37.40 3.91
431 432 3.945921 ACACTAGCTATACGTTGAGAGCA 59.054 43.478 7.62 0.00 37.40 4.26
432 433 4.201930 ACACACTAGCTATACGTTGAGAGC 60.202 45.833 0.00 0.00 35.07 4.09
433 434 5.487153 ACACACTAGCTATACGTTGAGAG 57.513 43.478 0.00 0.00 0.00 3.20
434 435 5.892160 AACACACTAGCTATACGTTGAGA 57.108 39.130 0.00 0.00 0.00 3.27
435 436 6.946229 AAAACACACTAGCTATACGTTGAG 57.054 37.500 0.00 0.00 0.00 3.02
511 525 2.688507 TGCTCACTCGAGATTTTGGTC 58.311 47.619 21.68 3.21 42.34 4.02
550 564 2.660064 GGACGGACCTGATGCTGGT 61.660 63.158 0.00 0.00 38.38 4.00
554 568 1.153549 GAGTGGACGGACCTGATGC 60.154 63.158 0.00 0.00 39.86 3.91
565 579 3.703127 GGACGGGGTGGAGTGGAC 61.703 72.222 0.00 0.00 0.00 4.02
682 697 1.674057 GGTGAGTGGGACTGGTGAG 59.326 63.158 0.00 0.00 0.00 3.51
683 698 1.841556 GGGTGAGTGGGACTGGTGA 60.842 63.158 0.00 0.00 0.00 4.02
684 699 2.750350 GGGTGAGTGGGACTGGTG 59.250 66.667 0.00 0.00 0.00 4.17
685 700 2.923035 CGGGTGAGTGGGACTGGT 60.923 66.667 0.00 0.00 0.00 4.00
686 701 4.394712 GCGGGTGAGTGGGACTGG 62.395 72.222 0.00 0.00 0.00 4.00
687 702 2.859273 GATGCGGGTGAGTGGGACTG 62.859 65.000 0.00 0.00 0.00 3.51
956 977 2.766400 CCGCAAACCACACCAACGT 61.766 57.895 0.00 0.00 0.00 3.99
1127 1148 3.488090 GGTACACGCTCCGCTTGC 61.488 66.667 0.00 0.00 30.76 4.01
1128 1149 1.805945 GAGGTACACGCTCCGCTTG 60.806 63.158 0.00 0.00 33.94 4.01
1132 1153 1.226974 CCATGAGGTACACGCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
1338 1359 2.278596 CCGCCGTGTCCATCGTAG 60.279 66.667 0.00 0.00 0.00 3.51
1429 1454 0.040336 GGCATGATGAAGCATGAGCG 60.040 55.000 12.50 0.00 46.64 5.03
1519 1544 0.778078 TCCCCCAATTCCTCCAACCA 60.778 55.000 0.00 0.00 0.00 3.67
1549 1574 1.726791 CCATGGTTCTTTCACGTCGAG 59.273 52.381 2.57 0.00 0.00 4.04
1551 1576 0.796312 CCCATGGTTCTTTCACGTCG 59.204 55.000 11.73 0.00 0.00 5.12
1645 1670 1.381872 CAGGACGGATCTCCCTGGT 60.382 63.158 15.93 0.00 42.75 4.00
1649 1674 2.503382 GGCTCAGGACGGATCTCCC 61.503 68.421 0.00 0.00 0.00 4.30
1654 1679 0.394565 GCAATAGGCTCAGGACGGAT 59.605 55.000 0.00 0.00 40.25 4.18
1662 1687 1.047801 TATCAGCGGCAATAGGCTCA 58.952 50.000 1.45 0.00 44.01 4.26
1782 1807 1.203928 GATCGACGGACAGAGCAATG 58.796 55.000 0.00 0.00 0.00 2.82
1850 1875 9.976511 ATGAAAGCATAATCAGATACAATTTGG 57.023 29.630 0.78 0.00 31.57 3.28
1875 1900 6.556495 TCATCTTTCCTATCAGGCTAGAACAT 59.444 38.462 0.00 0.00 34.61 2.71
1970 1995 0.096976 CGATTGACCGTGACATTGCC 59.903 55.000 0.00 0.00 0.00 4.52
2026 2051 9.642327 CTTGACATCATCAATAATTTTGTCCAA 57.358 29.630 0.00 0.00 46.37 3.53
2056 2081 4.321899 GCATTCCAAACATGGCTTTACAGA 60.322 41.667 0.00 0.00 0.00 3.41
2094 2119 8.659925 TCGTGTAAGGAAGTAACAAAAACATA 57.340 30.769 0.00 0.00 0.00 2.29
2110 2135 2.028476 TCATGTTGGGACTCGTGTAAGG 60.028 50.000 0.00 0.00 0.00 2.69
2111 2136 2.993899 GTCATGTTGGGACTCGTGTAAG 59.006 50.000 0.00 0.00 32.54 2.34
2113 2138 2.244695 AGTCATGTTGGGACTCGTGTA 58.755 47.619 0.00 0.00 41.63 2.90
2161 2196 7.584532 AGATGCCTCCTAGAGTTACTAAAGTA 58.415 38.462 0.00 0.00 0.00 2.24
2251 2292 6.876155 TGCCATATGTGCTGAACAATTTTAT 58.124 32.000 14.63 0.00 43.61 1.40
2257 2298 5.911378 TTAATGCCATATGTGCTGAACAA 57.089 34.783 14.63 0.00 43.61 2.83
2267 2308 9.345517 CTGAACCGAATAAATTAATGCCATATG 57.654 33.333 0.00 0.00 0.00 1.78
2337 2379 5.221481 CCCAAACATATGCAGAAATATGCCA 60.221 40.000 1.58 0.00 45.91 4.92
2389 2431 5.036117 TGATGGTTTGATAGGCTCCTAAC 57.964 43.478 0.00 0.00 31.73 2.34
2415 2459 4.427096 TTCTTCTTTTTGACAACACGCA 57.573 36.364 0.00 0.00 0.00 5.24
2416 2460 5.721240 GCTTTTCTTCTTTTTGACAACACGC 60.721 40.000 0.00 0.00 0.00 5.34
2465 2517 7.159372 CAGTACCAAAGACTTAGGTGTATTGT 58.841 38.462 0.00 0.00 36.87 2.71
2472 2524 4.228824 TGTCCAGTACCAAAGACTTAGGT 58.771 43.478 0.00 0.00 39.41 3.08
2494 2546 9.651913 AAATTCAGTTTAATGTTTGACACAACT 57.348 25.926 0.00 0.00 39.50 3.16
2609 2677 4.935205 TGTGATCTCGTAAATTGGAACAGG 59.065 41.667 0.00 0.00 42.39 4.00
2764 2857 3.963476 TTCCAGGAAAGGAACCAGAAA 57.037 42.857 0.00 0.00 42.56 2.52
2831 2924 7.067494 AGCATCCTAATCCAAATACTTTGACAC 59.933 37.037 1.28 0.00 43.26 3.67
2865 2958 7.256190 GGGGACTTTTTACTTTTGCTTCCTTAT 60.256 37.037 0.00 0.00 0.00 1.73
2872 2965 3.923648 AGGGGGACTTTTTACTTTTGCT 58.076 40.909 0.00 0.00 0.00 3.91
2925 3018 4.368315 CCAGTTGCACGAATAGTAGCATA 58.632 43.478 0.00 0.00 36.98 3.14
3017 3110 7.681939 AGTATTCAGATAGTAGCAGACTAGC 57.318 40.000 6.06 6.06 45.72 3.42
3099 3203 4.211920 TGGCTGGTTTAACTGCTTAGTTT 58.788 39.130 11.53 0.00 35.86 2.66
3101 3205 3.502123 TGGCTGGTTTAACTGCTTAGT 57.498 42.857 11.53 0.00 35.86 2.24
3102 3206 6.699575 ATAATGGCTGGTTTAACTGCTTAG 57.300 37.500 11.53 0.00 35.86 2.18
3120 3224 4.555313 CGCTAACCCATGCACAGAATAATG 60.555 45.833 0.00 0.00 0.00 1.90
3125 3229 0.036164 ACGCTAACCCATGCACAGAA 59.964 50.000 0.00 0.00 0.00 3.02
3128 3232 0.673333 CAGACGCTAACCCATGCACA 60.673 55.000 0.00 0.00 0.00 4.57
3141 3245 1.221414 AAGAAGCTTCACACAGACGC 58.779 50.000 27.57 0.00 41.51 5.19
3142 3246 3.369147 CCATAAGAAGCTTCACACAGACG 59.631 47.826 27.57 7.78 0.00 4.18
3143 3247 3.126000 GCCATAAGAAGCTTCACACAGAC 59.874 47.826 27.57 8.19 0.00 3.51
3144 3248 3.008375 AGCCATAAGAAGCTTCACACAGA 59.992 43.478 27.57 6.81 35.22 3.41
3145 3249 3.341823 AGCCATAAGAAGCTTCACACAG 58.658 45.455 27.57 14.09 35.22 3.66
3146 3250 3.423539 AGCCATAAGAAGCTTCACACA 57.576 42.857 27.57 10.11 35.22 3.72
3147 3251 6.442513 AATAAGCCATAAGAAGCTTCACAC 57.557 37.500 27.57 10.82 46.11 3.82
3148 3252 7.829211 AGTTAATAAGCCATAAGAAGCTTCACA 59.171 33.333 27.57 15.07 46.11 3.58
3149 3253 8.214721 AGTTAATAAGCCATAAGAAGCTTCAC 57.785 34.615 27.57 11.72 46.11 3.18
3150 3254 8.807948 AAGTTAATAAGCCATAAGAAGCTTCA 57.192 30.769 27.57 9.13 46.11 3.02
3194 3298 1.409064 TCACCTGCAAGTAGATAGGCG 59.591 52.381 0.00 0.00 33.57 5.52
3195 3299 2.483889 GGTCACCTGCAAGTAGATAGGC 60.484 54.545 0.00 0.00 33.57 3.93
3401 3505 2.892425 GGTTCGCTGCCTCCATCG 60.892 66.667 0.00 0.00 32.23 3.84
3555 3659 2.104281 GCTAGTCGGGTGAATTATGGGT 59.896 50.000 0.00 0.00 0.00 4.51
3719 3829 0.931702 TACAGAAACACGCCAACACG 59.068 50.000 0.00 0.00 39.50 4.49
3761 3871 2.158623 AGAATCAAGTGTGAACAGCCCA 60.159 45.455 0.00 0.00 37.30 5.36
3881 3991 2.159599 GCAAGCACATCTTCTGCTACAC 60.160 50.000 0.00 0.00 44.45 2.90
3935 4045 7.335171 TGTTCATCTGATGATCTGTAAAACAGG 59.665 37.037 20.16 0.00 39.69 4.00
3937 4047 8.671028 CATGTTCATCTGATGATCTGTAAAACA 58.329 33.333 20.16 17.58 39.39 2.83
3938 4048 8.886719 TCATGTTCATCTGATGATCTGTAAAAC 58.113 33.333 20.16 13.05 39.39 2.43
4011 4123 4.978083 ATCAGTCAAACATTCAGCCATC 57.022 40.909 0.00 0.00 0.00 3.51
4024 4136 7.283127 GGGAGATAAAGCAACAATATCAGTCAA 59.717 37.037 0.00 0.00 0.00 3.18
4090 4202 0.107945 CAGTTAGCCCAGGACTGAGC 60.108 60.000 0.00 0.00 42.54 4.26
4116 4228 9.988350 GTTGATGTTTATGTTACTTACCATCAG 57.012 33.333 13.95 0.00 38.75 2.90
4117 4229 8.952278 GGTTGATGTTTATGTTACTTACCATCA 58.048 33.333 11.97 11.97 36.58 3.07
4228 4343 5.045869 TGGTAGTCCTTCCTAAAACATGAGG 60.046 44.000 0.00 0.00 34.23 3.86
4309 4424 5.681437 GCACATAGTCAATAGTTCCTTCCGA 60.681 44.000 0.00 0.00 0.00 4.55
4362 4477 5.202004 AGGACGGAGAGAGTACAATATTGT 58.798 41.667 23.80 23.80 44.86 2.71
4400 4515 9.694520 CGTTCTTTCTCTACATTGATTGTAATG 57.305 33.333 0.00 0.00 40.27 1.90
4420 4535 2.030805 GGCAGTGCAGAATTTCGTTCTT 60.031 45.455 18.61 0.00 44.80 2.52
4422 4537 1.266718 TGGCAGTGCAGAATTTCGTTC 59.733 47.619 18.61 0.00 37.08 3.95
4423 4538 1.317613 TGGCAGTGCAGAATTTCGTT 58.682 45.000 18.61 0.00 0.00 3.85
4474 4599 5.279384 TCGTTCTTTCTCTGTTGTGAGTAC 58.721 41.667 0.00 0.00 35.68 2.73
4476 4601 4.386867 TCGTTCTTTCTCTGTTGTGAGT 57.613 40.909 0.00 0.00 35.68 3.41
4512 4637 0.941963 TGGAGCCTACCCCACTCTAT 59.058 55.000 0.00 0.00 0.00 1.98
4518 4643 0.474854 TGAAGTTGGAGCCTACCCCA 60.475 55.000 0.00 0.00 0.00 4.96
4554 4679 3.821748 ACCTTCTTTTGGAGTCTTCACC 58.178 45.455 0.00 0.00 0.00 4.02
4568 4693 3.244770 TGCTCGTCCCAAAATACCTTCTT 60.245 43.478 0.00 0.00 0.00 2.52
4619 4745 2.507339 AAATGAACCGGCACAAACAG 57.493 45.000 0.00 0.00 0.00 3.16
4627 4753 2.414161 GCAGACACTAAAATGAACCGGC 60.414 50.000 0.00 0.00 0.00 6.13
4782 4916 8.116136 GTCTTTTGGTTGACTGCAAAATTTTAG 58.884 33.333 2.44 1.09 35.42 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.