Multiple sequence alignment - TraesCS3B01G277400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G277400 chr3B 100.000 4405 0 0 1320 5724 447286295 447290699 0.000000e+00 8135.0
1 TraesCS3B01G277400 chr3B 100.000 1049 0 0 1 1049 447284976 447286024 0.000000e+00 1938.0
2 TraesCS3B01G277400 chr3D 94.822 3785 136 20 1320 5073 347573092 347576847 0.000000e+00 5849.0
3 TraesCS3B01G277400 chr3D 89.270 466 29 14 596 1049 347572587 347573043 1.080000e-156 564.0
4 TraesCS3B01G277400 chr3D 95.963 322 13 0 5072 5393 210410469 210410148 1.830000e-144 523.0
5 TraesCS3B01G277400 chr3D 92.330 339 17 7 5393 5723 347576844 347577181 1.870000e-129 473.0
6 TraesCS3B01G277400 chr3D 90.417 240 17 4 3 239 347571350 347571586 1.550000e-80 311.0
7 TraesCS3B01G277400 chr3D 91.406 128 10 1 357 484 347571621 347571747 2.120000e-39 174.0
8 TraesCS3B01G277400 chr3A 94.672 3735 147 17 1320 5024 466774342 466778054 0.000000e+00 5747.0
9 TraesCS3B01G277400 chr3A 92.787 305 16 6 5396 5695 466781037 466781340 2.450000e-118 436.0
10 TraesCS3B01G277400 chr3A 92.832 279 10 8 777 1049 466773720 466773994 4.160000e-106 396.0
11 TraesCS3B01G277400 chr3A 95.187 187 6 3 2228 2412 713938206 713938021 5.610000e-75 292.0
12 TraesCS3B01G277400 chr3A 94.652 187 7 3 2228 2412 22509263 22509078 2.610000e-73 287.0
13 TraesCS3B01G277400 chr5A 96.024 327 13 0 5070 5396 374885837 374886163 3.040000e-147 532.0
14 TraesCS3B01G277400 chr5A 94.910 334 15 2 5070 5403 40613588 40613919 6.570000e-144 521.0
15 TraesCS3B01G277400 chr5A 95.152 330 15 1 5070 5399 228892252 228892580 2.360000e-143 520.0
16 TraesCS3B01G277400 chr5A 94.652 187 7 3 2228 2412 657069015 657068830 2.610000e-73 287.0
17 TraesCS3B01G277400 chr7B 96.273 322 11 1 5072 5393 435675954 435675634 1.410000e-145 527.0
18 TraesCS3B01G277400 chr7B 95.122 328 16 0 5070 5397 680209995 680209668 8.500000e-143 518.0
19 TraesCS3B01G277400 chr7B 92.126 127 8 2 236 362 22065657 22065533 1.640000e-40 178.0
20 TraesCS3B01G277400 chr2A 95.195 333 15 1 5063 5395 15461437 15461106 5.080000e-145 525.0
21 TraesCS3B01G277400 chr2A 95.441 329 14 1 5072 5399 40502631 40502303 1.830000e-144 523.0
22 TraesCS3B01G277400 chr2A 90.196 51 4 1 434 484 648026568 648026617 1.330000e-06 65.8
23 TraesCS3B01G277400 chr5B 95.385 325 14 1 5074 5397 283986068 283986392 3.060000e-142 516.0
24 TraesCS3B01G277400 chr5B 89.840 187 15 4 11 194 64633708 64633893 2.670000e-58 237.0
25 TraesCS3B01G277400 chr5B 93.443 122 6 2 238 358 70910808 70910688 4.560000e-41 180.0
26 TraesCS3B01G277400 chr5B 92.000 125 9 1 251 375 50231419 50231296 2.120000e-39 174.0
27 TraesCS3B01G277400 chr6A 95.312 192 8 1 2228 2418 581579572 581579763 2.590000e-78 303.0
28 TraesCS3B01G277400 chr6A 88.144 194 20 3 3 194 596074569 596074761 1.600000e-55 228.0
29 TraesCS3B01G277400 chr1A 95.187 187 6 3 2228 2412 49510357 49510172 5.610000e-75 292.0
30 TraesCS3B01G277400 chr1A 94.118 187 8 3 2228 2412 471498151 471497966 1.210000e-71 281.0
31 TraesCS3B01G277400 chr1A 94.118 187 8 3 2228 2412 555992852 555993037 1.210000e-71 281.0
32 TraesCS3B01G277400 chr1A 93.583 187 9 3 2228 2412 530874779 530874594 5.650000e-70 276.0
33 TraesCS3B01G277400 chr4A 94.652 187 7 3 2228 2412 518038550 518038735 2.610000e-73 287.0
34 TraesCS3B01G277400 chr4A 88.144 194 19 4 3 194 220023365 220023556 1.600000e-55 228.0
35 TraesCS3B01G277400 chr4A 97.222 108 3 0 251 358 710250371 710250478 3.520000e-42 183.0
36 TraesCS3B01G277400 chr6D 90.625 192 14 4 6 194 10173108 10172918 9.520000e-63 252.0
37 TraesCS3B01G277400 chr6D 89.583 192 16 4 6 194 316264661 316264471 2.060000e-59 241.0
38 TraesCS3B01G277400 chr6D 89.247 186 16 4 10 194 44930986 44930804 4.460000e-56 230.0
39 TraesCS3B01G277400 chr5D 88.601 193 19 3 3 194 34892074 34892264 1.240000e-56 231.0
40 TraesCS3B01G277400 chr1D 89.305 187 16 4 11 194 4633377 4633192 1.240000e-56 231.0
41 TraesCS3B01G277400 chr4B 97.222 108 3 0 251 358 529838251 529838358 3.520000e-42 183.0
42 TraesCS3B01G277400 chr7A 92.308 130 6 4 233 359 664790053 664789925 1.270000e-41 182.0
43 TraesCS3B01G277400 chr7A 93.939 66 3 1 2228 2292 14909735 14909800 1.310000e-16 99.0
44 TraesCS3B01G277400 chr1B 94.215 121 4 3 241 359 533752022 533752141 1.270000e-41 182.0
45 TraesCS3B01G277400 chr1B 91.111 135 11 1 237 371 604145093 604145226 1.270000e-41 182.0
46 TraesCS3B01G277400 chr6B 94.068 118 4 3 244 359 37764445 37764561 5.890000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G277400 chr3B 447284976 447290699 5723 False 5036.5 8135 100.000000 1 5724 2 chr3B.!!$F1 5723
1 TraesCS3B01G277400 chr3D 347571350 347577181 5831 False 1474.2 5849 91.649000 3 5723 5 chr3D.!!$F1 5720
2 TraesCS3B01G277400 chr3A 466773720 466781340 7620 False 2193.0 5747 93.430333 777 5695 3 chr3A.!!$F1 4918

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 1625 0.104671 GAGGCCAAACAAAAGCAGCA 59.895 50.0 5.01 0.0 0.00 4.41 F
993 1746 0.178888 TCCAAAAATCCCCAACCCCC 60.179 55.0 0.00 0.0 0.00 5.40 F
2727 3574 0.537143 AAGATGGTTGCAGTTCCGCA 60.537 50.0 0.00 0.0 41.03 5.69 F
3826 4674 0.687354 TGTCTGAAGAAGAGGCACCC 59.313 55.0 0.00 0.0 34.84 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 2941 0.741221 CCTTTACAGGCCTCGTGCTC 60.741 60.0 0.00 0.00 40.92 4.26 R
2734 3581 0.810426 ATGCTGCGTGATCTGCTCAG 60.810 55.0 11.02 7.51 33.51 3.35 R
4267 5115 0.252193 TCTTGGGCTTTGGGGGAATG 60.252 55.0 0.00 0.00 0.00 2.67 R
5295 8644 0.034186 CTCCCCAATGCAAGCTACCA 60.034 55.0 0.00 0.00 0.00 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 8.527567 TGTTTCGAGTTTTGACTTGAAATTTT 57.472 26.923 19.38 0.00 46.03 1.82
67 68 8.431593 TGTTTCGAGTTTTGACTTGAAATTTTG 58.568 29.630 19.38 0.00 46.03 2.44
101 103 6.151691 ACATTGATTTGTGTGAATGTGCTAC 58.848 36.000 0.00 0.00 37.58 3.58
174 178 0.602638 CGGTAGCACCACAAGCTTCA 60.603 55.000 0.00 0.00 43.25 3.02
187 191 3.076621 CAAGCTTCAGTGCACCAGATAA 58.923 45.455 14.63 0.01 34.99 1.75
190 194 4.338879 AGCTTCAGTGCACCAGATAATTT 58.661 39.130 14.63 0.00 34.99 1.82
191 195 4.768968 AGCTTCAGTGCACCAGATAATTTT 59.231 37.500 14.63 0.00 34.99 1.82
193 197 5.643379 TTCAGTGCACCAGATAATTTTCC 57.357 39.130 14.63 0.00 0.00 3.13
196 200 5.538053 TCAGTGCACCAGATAATTTTCCAAA 59.462 36.000 14.63 0.00 0.00 3.28
197 201 6.211184 TCAGTGCACCAGATAATTTTCCAAAT 59.789 34.615 14.63 0.00 0.00 2.32
198 202 7.395772 TCAGTGCACCAGATAATTTTCCAAATA 59.604 33.333 14.63 0.00 0.00 1.40
199 203 7.703621 CAGTGCACCAGATAATTTTCCAAATAG 59.296 37.037 14.63 0.00 0.00 1.73
200 204 6.476706 GTGCACCAGATAATTTTCCAAATAGC 59.523 38.462 5.22 0.00 0.00 2.97
201 205 6.380846 TGCACCAGATAATTTTCCAAATAGCT 59.619 34.615 0.00 0.00 0.00 3.32
202 206 7.559533 TGCACCAGATAATTTTCCAAATAGCTA 59.440 33.333 0.00 0.00 0.00 3.32
205 209 7.231519 ACCAGATAATTTTCCAAATAGCTAGCC 59.768 37.037 12.13 0.00 0.00 3.93
208 212 5.859205 AATTTTCCAAATAGCTAGCCAGG 57.141 39.130 12.13 6.64 0.00 4.45
212 216 2.157738 CCAAATAGCTAGCCAGGCATC 58.842 52.381 15.80 1.44 0.00 3.91
213 217 2.224719 CCAAATAGCTAGCCAGGCATCT 60.225 50.000 15.80 9.70 0.00 2.90
219 223 2.178580 GCTAGCCAGGCATCTAGATCT 58.821 52.381 15.80 0.00 35.48 2.75
239 243 5.343307 TCTGTATGTGATAGCAGCAAGAA 57.657 39.130 0.00 0.00 0.00 2.52
240 244 5.354767 TCTGTATGTGATAGCAGCAAGAAG 58.645 41.667 0.00 0.00 0.00 2.85
242 246 5.922053 TGTATGTGATAGCAGCAAGAAGAT 58.078 37.500 0.00 0.00 0.00 2.40
243 247 5.987953 TGTATGTGATAGCAGCAAGAAGATC 59.012 40.000 0.00 0.00 0.00 2.75
244 248 4.476628 TGTGATAGCAGCAAGAAGATCA 57.523 40.909 0.00 0.00 0.00 2.92
246 250 5.247862 TGTGATAGCAGCAAGAAGATCAAA 58.752 37.500 0.00 0.00 0.00 2.69
248 252 7.049754 TGTGATAGCAGCAAGAAGATCAAATA 58.950 34.615 0.00 0.00 0.00 1.40
249 253 7.226128 TGTGATAGCAGCAAGAAGATCAAATAG 59.774 37.037 0.00 0.00 0.00 1.73
250 254 4.897025 AGCAGCAAGAAGATCAAATAGC 57.103 40.909 0.00 0.00 0.00 2.97
251 255 4.525024 AGCAGCAAGAAGATCAAATAGCT 58.475 39.130 0.00 0.00 0.00 3.32
252 256 5.678583 AGCAGCAAGAAGATCAAATAGCTA 58.321 37.500 0.00 0.00 0.00 3.32
253 257 5.526846 AGCAGCAAGAAGATCAAATAGCTAC 59.473 40.000 0.00 0.00 0.00 3.58
254 258 5.526846 GCAGCAAGAAGATCAAATAGCTACT 59.473 40.000 0.00 0.00 0.00 2.57
257 261 5.468409 GCAAGAAGATCAAATAGCTACTCCC 59.532 44.000 0.00 0.00 0.00 4.30
258 262 6.687647 GCAAGAAGATCAAATAGCTACTCCCT 60.688 42.308 0.00 0.00 0.00 4.20
261 265 6.267471 AGAAGATCAAATAGCTACTCCCTCAG 59.733 42.308 0.00 0.00 0.00 3.35
262 266 5.463154 AGATCAAATAGCTACTCCCTCAGT 58.537 41.667 0.00 0.00 39.41 3.41
264 268 5.599999 TCAAATAGCTACTCCCTCAGTTC 57.400 43.478 0.00 0.00 36.43 3.01
265 269 4.098044 TCAAATAGCTACTCCCTCAGTTCG 59.902 45.833 0.00 0.00 36.43 3.95
266 270 2.054232 TAGCTACTCCCTCAGTTCGG 57.946 55.000 0.00 0.00 36.43 4.30
270 274 2.168728 GCTACTCCCTCAGTTCGGAATT 59.831 50.000 0.00 0.00 36.43 2.17
271 275 3.383825 GCTACTCCCTCAGTTCGGAATTA 59.616 47.826 0.00 0.00 36.43 1.40
273 277 3.442076 ACTCCCTCAGTTCGGAATTACT 58.558 45.455 0.00 0.00 26.56 2.24
274 278 3.838903 ACTCCCTCAGTTCGGAATTACTT 59.161 43.478 0.00 0.00 26.56 2.24
275 279 4.184629 CTCCCTCAGTTCGGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
276 280 3.581332 TCCCTCAGTTCGGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
277 281 3.933332 CCCTCAGTTCGGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
278 282 3.612860 CCTCAGTTCGGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
279 283 4.235360 CTCAGTTCGGAATTACTTGTCGT 58.765 43.478 0.00 0.00 0.00 4.34
280 284 3.985279 TCAGTTCGGAATTACTTGTCGTG 59.015 43.478 0.00 0.00 0.00 4.35
281 285 3.985279 CAGTTCGGAATTACTTGTCGTGA 59.015 43.478 0.00 0.00 0.00 4.35
282 286 4.446385 CAGTTCGGAATTACTTGTCGTGAA 59.554 41.667 0.00 0.00 0.00 3.18
283 287 5.050634 CAGTTCGGAATTACTTGTCGTGAAA 60.051 40.000 0.00 0.00 0.00 2.69
284 288 5.524646 AGTTCGGAATTACTTGTCGTGAAAA 59.475 36.000 0.00 0.00 0.00 2.29
285 289 6.204108 AGTTCGGAATTACTTGTCGTGAAAAT 59.796 34.615 0.00 0.00 0.00 1.82
286 290 5.922546 TCGGAATTACTTGTCGTGAAAATG 58.077 37.500 0.00 0.00 0.00 2.32
287 291 5.086058 CGGAATTACTTGTCGTGAAAATGG 58.914 41.667 0.00 0.00 0.00 3.16
288 292 5.106869 CGGAATTACTTGTCGTGAAAATGGA 60.107 40.000 0.00 0.00 0.00 3.41
289 293 6.403200 CGGAATTACTTGTCGTGAAAATGGAT 60.403 38.462 0.00 0.00 0.00 3.41
290 294 6.747280 GGAATTACTTGTCGTGAAAATGGATG 59.253 38.462 0.00 0.00 0.00 3.51
291 295 6.817765 ATTACTTGTCGTGAAAATGGATGT 57.182 33.333 0.00 0.00 0.00 3.06
292 296 7.915293 ATTACTTGTCGTGAAAATGGATGTA 57.085 32.000 0.00 0.00 0.00 2.29
293 297 7.915293 TTACTTGTCGTGAAAATGGATGTAT 57.085 32.000 0.00 0.00 0.00 2.29
294 298 6.422776 ACTTGTCGTGAAAATGGATGTATC 57.577 37.500 0.00 0.00 0.00 2.24
295 299 6.173339 ACTTGTCGTGAAAATGGATGTATCT 58.827 36.000 0.00 0.00 0.00 1.98
296 300 7.327975 ACTTGTCGTGAAAATGGATGTATCTA 58.672 34.615 0.00 0.00 0.00 1.98
297 301 7.492669 ACTTGTCGTGAAAATGGATGTATCTAG 59.507 37.037 0.00 0.00 0.00 2.43
298 302 7.107639 TGTCGTGAAAATGGATGTATCTAGA 57.892 36.000 0.00 0.00 0.00 2.43
299 303 7.726216 TGTCGTGAAAATGGATGTATCTAGAT 58.274 34.615 10.73 10.73 0.00 1.98
300 304 7.653311 TGTCGTGAAAATGGATGTATCTAGATG 59.347 37.037 15.79 0.00 0.00 2.90
301 305 7.653713 GTCGTGAAAATGGATGTATCTAGATGT 59.346 37.037 15.79 1.25 0.00 3.06
302 306 8.856103 TCGTGAAAATGGATGTATCTAGATGTA 58.144 33.333 15.79 4.44 0.00 2.29
303 307 9.645059 CGTGAAAATGGATGTATCTAGATGTAT 57.355 33.333 15.79 9.11 0.00 2.29
329 333 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
330 334 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
331 335 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
332 336 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
333 337 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
334 338 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
335 339 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
336 340 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
337 341 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
338 342 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
339 343 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
340 344 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
341 345 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
342 346 6.659242 ACATCCATTTCCGAGACAAGTAATTT 59.341 34.615 0.00 0.00 0.00 1.82
343 347 6.737254 TCCATTTCCGAGACAAGTAATTTC 57.263 37.500 0.00 0.00 0.00 2.17
344 348 6.234920 TCCATTTCCGAGACAAGTAATTTCA 58.765 36.000 0.00 0.00 0.00 2.69
345 349 6.712998 TCCATTTCCGAGACAAGTAATTTCAA 59.287 34.615 0.00 0.00 0.00 2.69
346 350 7.229707 TCCATTTCCGAGACAAGTAATTTCAAA 59.770 33.333 0.00 0.00 0.00 2.69
347 351 7.326063 CCATTTCCGAGACAAGTAATTTCAAAC 59.674 37.037 0.00 0.00 0.00 2.93
348 352 5.585500 TCCGAGACAAGTAATTTCAAACG 57.415 39.130 0.00 0.00 0.00 3.60
349 353 4.449743 TCCGAGACAAGTAATTTCAAACGG 59.550 41.667 0.00 0.00 37.37 4.44
350 354 4.449743 CCGAGACAAGTAATTTCAAACGGA 59.550 41.667 0.00 0.00 38.09 4.69
351 355 5.389516 CCGAGACAAGTAATTTCAAACGGAG 60.390 44.000 0.00 0.00 38.09 4.63
352 356 5.389516 CGAGACAAGTAATTTCAAACGGAGG 60.390 44.000 0.00 0.00 0.00 4.30
353 357 4.760204 AGACAAGTAATTTCAAACGGAGGG 59.240 41.667 0.00 0.00 0.00 4.30
354 358 4.721132 ACAAGTAATTTCAAACGGAGGGA 58.279 39.130 0.00 0.00 0.00 4.20
355 359 4.760204 ACAAGTAATTTCAAACGGAGGGAG 59.240 41.667 0.00 0.00 0.00 4.30
359 363 4.635699 AATTTCAAACGGAGGGAGTAGT 57.364 40.909 0.00 0.00 0.00 2.73
370 374 3.054655 GGAGGGAGTAGTTACCATGCAAA 60.055 47.826 0.00 0.00 0.00 3.68
378 382 5.827797 AGTAGTTACCATGCAAATATGTGGG 59.172 40.000 6.71 0.00 36.05 4.61
415 419 2.441532 GCAGGTGCCATGCCATCT 60.442 61.111 1.03 0.00 37.73 2.90
421 425 1.404583 GGTGCCATGCCATCTGTTTTC 60.405 52.381 0.00 0.00 0.00 2.29
423 427 0.896923 GCCATGCCATCTGTTTTCCA 59.103 50.000 0.00 0.00 0.00 3.53
433 437 4.396166 CCATCTGTTTTCCATTCTAGCGTT 59.604 41.667 0.00 0.00 0.00 4.84
524 556 2.610859 CTACCACCAGGGCCCAGT 60.611 66.667 27.56 18.91 42.05 4.00
527 559 2.993038 TACCACCAGGGCCCAGTTGA 62.993 60.000 27.56 5.36 42.05 3.18
530 562 2.276740 CCAGGGCCCAGTTGATCC 59.723 66.667 27.56 0.00 0.00 3.36
542 574 4.261741 CCCAGTTGATCCTTTCTGTTGTTG 60.262 45.833 0.00 0.00 0.00 3.33
543 575 4.339247 CCAGTTGATCCTTTCTGTTGTTGT 59.661 41.667 0.00 0.00 0.00 3.32
544 576 5.163519 CCAGTTGATCCTTTCTGTTGTTGTT 60.164 40.000 0.00 0.00 0.00 2.83
545 577 5.745294 CAGTTGATCCTTTCTGTTGTTGTTG 59.255 40.000 0.00 0.00 0.00 3.33
546 578 5.418840 AGTTGATCCTTTCTGTTGTTGTTGT 59.581 36.000 0.00 0.00 0.00 3.32
547 579 5.913137 TGATCCTTTCTGTTGTTGTTGTT 57.087 34.783 0.00 0.00 0.00 2.83
559 591 2.361757 TGTTGTTGTTTGCATCCAGAGG 59.638 45.455 0.00 0.00 0.00 3.69
570 602 1.806542 CATCCAGAGGTGGTTGTTTCG 59.193 52.381 0.00 0.00 45.28 3.46
583 615 5.046529 TGGTTGTTTCGGTCAATTTGATTG 58.953 37.500 1.78 0.00 41.57 2.67
589 621 1.135024 CGGTCAATTTGATTGGGCAGG 60.135 52.381 1.78 0.00 40.61 4.85
594 626 1.560505 ATTTGATTGGGCAGGTGGTC 58.439 50.000 0.00 0.00 0.00 4.02
599 1338 1.970640 GATTGGGCAGGTGGTCTTTTT 59.029 47.619 0.00 0.00 0.00 1.94
629 1368 0.532573 TCTCGGACTTGACCTGCATC 59.467 55.000 0.00 0.00 0.00 3.91
631 1370 1.191489 TCGGACTTGACCTGCATCCA 61.191 55.000 1.47 0.00 0.00 3.41
647 1386 0.774096 TCCACATCTTCCCAACCCCA 60.774 55.000 0.00 0.00 0.00 4.96
690 1429 2.193517 CAACGACCACCCAACCCA 59.806 61.111 0.00 0.00 0.00 4.51
705 1444 3.447742 CAACCCAGCAGAAACAGAAAAC 58.552 45.455 0.00 0.00 0.00 2.43
706 1445 2.733956 ACCCAGCAGAAACAGAAAACA 58.266 42.857 0.00 0.00 0.00 2.83
707 1446 2.689983 ACCCAGCAGAAACAGAAAACAG 59.310 45.455 0.00 0.00 0.00 3.16
708 1447 2.951642 CCCAGCAGAAACAGAAAACAGA 59.048 45.455 0.00 0.00 0.00 3.41
709 1448 3.243201 CCCAGCAGAAACAGAAAACAGAC 60.243 47.826 0.00 0.00 0.00 3.51
710 1449 3.546815 CCAGCAGAAACAGAAAACAGACG 60.547 47.826 0.00 0.00 0.00 4.18
711 1450 3.309682 CAGCAGAAACAGAAAACAGACGA 59.690 43.478 0.00 0.00 0.00 4.20
713 1452 3.546218 GCAGAAACAGAAAACAGACGACC 60.546 47.826 0.00 0.00 0.00 4.79
715 1454 2.702592 AACAGAAAACAGACGACCCA 57.297 45.000 0.00 0.00 0.00 4.51
716 1455 2.930826 ACAGAAAACAGACGACCCAT 57.069 45.000 0.00 0.00 0.00 4.00
717 1456 2.494059 ACAGAAAACAGACGACCCATG 58.506 47.619 0.00 0.00 0.00 3.66
720 1459 0.534203 AAAACAGACGACCCATGCGT 60.534 50.000 0.00 0.00 45.79 5.24
778 1521 1.313812 ACGCCCAACCAACGTTTTCA 61.314 50.000 0.00 0.00 36.46 2.69
876 1625 0.104671 GAGGCCAAACAAAAGCAGCA 59.895 50.000 5.01 0.00 0.00 4.41
877 1626 0.540923 AGGCCAAACAAAAGCAGCAA 59.459 45.000 5.01 0.00 0.00 3.91
878 1627 0.939419 GGCCAAACAAAAGCAGCAAG 59.061 50.000 0.00 0.00 0.00 4.01
879 1628 0.305617 GCCAAACAAAAGCAGCAAGC 59.694 50.000 0.00 0.00 46.19 4.01
993 1746 0.178888 TCCAAAAATCCCCAACCCCC 60.179 55.000 0.00 0.00 0.00 5.40
1479 2314 1.075600 CACCTCCTCCTCCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
1480 2315 1.230819 ACCTCCTCCTCCTCCTCCT 60.231 63.158 0.00 0.00 0.00 3.69
1481 2316 1.293683 ACCTCCTCCTCCTCCTCCTC 61.294 65.000 0.00 0.00 0.00 3.71
1482 2317 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1483 2318 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1484 2319 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1485 2320 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1527 2362 1.810030 GTCGTTGACGGCCATCTCC 60.810 63.158 2.24 0.00 38.15 3.71
1950 2785 1.577328 CGCGGCTCAATGTCACCTTT 61.577 55.000 0.00 0.00 0.00 3.11
1963 2798 0.886490 CACCTTTTCCTGCGTGCTCT 60.886 55.000 0.00 0.00 0.00 4.09
2004 2839 2.211279 AAGGGAGGGGAAGTGGCT 59.789 61.111 0.00 0.00 0.00 4.75
2007 2842 2.936032 GGAGGGGAAGTGGCTGGT 60.936 66.667 0.00 0.00 0.00 4.00
2106 2941 2.252260 CTGCACGAGGTTTTGCCG 59.748 61.111 0.00 0.00 43.70 5.69
2176 3011 2.927580 GCGACCAAGGGTGAGACGA 61.928 63.158 0.00 0.00 35.25 4.20
2385 3220 5.596772 TGCCAATGTGAATGATCAAGATGAT 59.403 36.000 0.00 0.00 40.34 2.45
2387 3222 6.238925 GCCAATGTGAATGATCAAGATGATGA 60.239 38.462 0.00 0.00 37.20 2.92
2394 3229 9.894783 GTGAATGATCAAGATGATGATTTAAGG 57.105 33.333 0.00 0.00 40.03 2.69
2404 3239 4.934356 TGATGATTTAAGGGGTGAAGCTT 58.066 39.130 0.00 0.00 0.00 3.74
2460 3295 7.862512 AATTGAAGATCTTGCTAAAGAGGAG 57.137 36.000 14.00 0.00 45.50 3.69
2470 3305 5.290493 TGCTAAAGAGGAGACTGTTGAAA 57.710 39.130 0.00 0.00 44.30 2.69
2473 3320 5.992217 GCTAAAGAGGAGACTGTTGAAAAGA 59.008 40.000 0.00 0.00 44.30 2.52
2502 3349 5.014858 AGTGATGTTGCTCTTGAAATGGAT 58.985 37.500 0.00 0.00 0.00 3.41
2592 3439 1.373570 GTGAGTTGGCAGCAGATACC 58.626 55.000 3.63 0.00 0.00 2.73
2704 3551 1.016627 GCGATTGAGCTGCATTGGTA 58.983 50.000 1.02 0.00 0.00 3.25
2720 3567 3.003394 TGGTATGGAAGATGGTTGCAG 57.997 47.619 0.00 0.00 0.00 4.41
2727 3574 0.537143 AAGATGGTTGCAGTTCCGCA 60.537 50.000 0.00 0.00 41.03 5.69
2734 3581 1.234615 TTGCAGTTCCGCAAGTAGGC 61.235 55.000 0.00 0.00 46.61 3.93
2814 3661 5.130145 GGATATGCTTGGGATAGCTCATAGT 59.870 44.000 0.00 0.00 41.76 2.12
2844 3691 4.506886 GGTAACCTCAGATAGTGATCCG 57.493 50.000 0.00 0.00 33.51 4.18
2973 3820 5.319453 TCTGAAGATGTTGCAGAGGATTTT 58.681 37.500 0.00 0.00 34.02 1.82
2994 3841 5.598416 TTGATCTCTCCACAATCATACGT 57.402 39.130 0.00 0.00 30.03 3.57
3168 4015 2.123726 GGTAGCCCCATTGCCCTG 60.124 66.667 0.00 0.00 0.00 4.45
3219 4066 3.451894 GCTGATGGTTTGGGCCCG 61.452 66.667 19.37 0.00 0.00 6.13
3243 4090 1.279496 TTCAGACAGAGGATGGTGGG 58.721 55.000 0.00 0.00 0.00 4.61
3263 4110 2.749621 GGTTTCTGCGGTCAATGAATCT 59.250 45.455 0.00 0.00 0.00 2.40
3507 4354 6.419791 TCTAGAGTCTTCAGGAAGGTTAGAG 58.580 44.000 9.03 2.99 38.88 2.43
3530 4377 4.156455 TCTTTCTTGTCCTGCTTGTTCT 57.844 40.909 0.00 0.00 0.00 3.01
3672 4520 4.642429 TCGGGAAAGAAGAAGAAGAAAGG 58.358 43.478 0.00 0.00 0.00 3.11
3694 4542 1.408340 AGAGGTGCTGATCTGTCATCG 59.592 52.381 1.27 0.00 32.98 3.84
3704 4552 3.055167 TGATCTGTCATCGTCATTGGGTT 60.055 43.478 0.00 0.00 0.00 4.11
3706 4554 2.301583 TCTGTCATCGTCATTGGGTTCA 59.698 45.455 0.00 0.00 0.00 3.18
3745 4593 3.149196 TGTTTCACTTGAGGATCTTGCC 58.851 45.455 0.00 0.00 34.92 4.52
3811 4659 3.713248 TGAGGATACAATCTGGCATGTCT 59.287 43.478 0.00 0.00 41.41 3.41
3826 4674 0.687354 TGTCTGAAGAAGAGGCACCC 59.313 55.000 0.00 0.00 34.84 4.61
3890 4738 2.393271 AGGAAAGTCCGCAGAGAATG 57.607 50.000 0.00 0.00 42.75 2.67
3970 4818 3.090790 TGGTGGTGATGTTGATGGATTG 58.909 45.455 0.00 0.00 0.00 2.67
4077 4925 0.887933 AAAATACTTGCTGCCCACCG 59.112 50.000 0.00 0.00 0.00 4.94
4114 4962 0.690762 TACTTGGTGAAGGCCAGACC 59.309 55.000 5.01 8.32 40.01 3.85
4198 5046 1.796617 GCTCTCATGGTTCAATTGCGC 60.797 52.381 0.00 0.00 0.00 6.09
4205 5053 2.666862 TTCAATTGCGCGACCCGT 60.667 55.556 12.10 0.00 39.71 5.28
4252 5100 4.083110 ACACCGATGCTTTCTTTGATTCAG 60.083 41.667 0.00 0.00 0.00 3.02
4267 5115 2.951229 TTCAGGTGGAGAGGGTTTTC 57.049 50.000 0.00 0.00 0.00 2.29
4297 5145 4.202441 CAAAGCCCAAGATATACAGCACT 58.798 43.478 0.00 0.00 0.00 4.40
4339 5190 3.044156 TGAGCAAGATTATGAGGAGCCT 58.956 45.455 0.00 0.00 0.00 4.58
4352 5203 1.418334 GGAGCCTAATCCTGAGCAGA 58.582 55.000 0.00 0.00 36.35 4.26
4357 5208 4.487804 AGCCTAATCCTGAGCAGATTCTA 58.512 43.478 0.00 0.00 0.00 2.10
4372 5223 7.095910 AGCAGATTCTAGATAAATCATCGGTG 58.904 38.462 5.84 0.00 38.81 4.94
4373 5224 6.312426 GCAGATTCTAGATAAATCATCGGTGG 59.688 42.308 0.00 0.00 38.81 4.61
4374 5225 7.382110 CAGATTCTAGATAAATCATCGGTGGT 58.618 38.462 0.00 0.00 38.81 4.16
4384 5235 3.260931 TCGGTGGTCGACGAAGAG 58.739 61.111 9.92 0.77 43.74 2.85
4390 5241 2.520979 GTGGTCGACGAAGAGAAGATG 58.479 52.381 9.92 0.00 0.00 2.90
4406 5257 4.222588 AGAAGATGGAGGAAGACTCTGTTG 59.777 45.833 0.00 0.00 45.83 3.33
4408 5259 1.722034 TGGAGGAAGACTCTGTTGCT 58.278 50.000 0.00 0.00 45.83 3.91
4438 5289 0.109153 TCACAGAAGTGCATGTGGCT 59.891 50.000 16.08 0.00 45.46 4.75
4464 5315 6.169800 GTTTTAAGAGTGAGCCTGAGAAGAT 58.830 40.000 0.00 0.00 0.00 2.40
4516 5367 0.809385 CTGGTTCAAGATGGCTGCTG 59.191 55.000 0.00 0.00 0.00 4.41
4582 5433 3.225798 GCCACTGCAAAGGCCACA 61.226 61.111 16.27 0.00 45.18 4.17
4660 5511 1.542375 AGCAGGGACAAGATGGGGT 60.542 57.895 0.00 0.00 0.00 4.95
4733 5584 1.209747 GATTCCGGTGAGGGCTTTACT 59.790 52.381 0.00 0.00 41.52 2.24
4831 5683 1.165270 CCGAACCTCGCCTGAAATTT 58.835 50.000 0.00 0.00 38.82 1.82
4838 5690 4.589908 ACCTCGCCTGAAATTTATGTTCT 58.410 39.130 0.00 0.00 0.00 3.01
4843 5695 7.303634 TCGCCTGAAATTTATGTTCTTACTC 57.696 36.000 0.00 0.00 0.00 2.59
4890 5754 2.484770 CGCTTATTTGGATCGGAGGGAA 60.485 50.000 0.00 0.00 0.00 3.97
4892 5756 4.145052 GCTTATTTGGATCGGAGGGAATT 58.855 43.478 0.00 0.00 0.00 2.17
4895 5759 6.744339 GCTTATTTGGATCGGAGGGAATTCTA 60.744 42.308 5.23 0.00 0.00 2.10
4950 5814 1.460743 CGCGATGCATATGGAATCGTT 59.539 47.619 20.88 0.21 37.13 3.85
4963 5827 0.322322 AATCGTTTCGTACCAGCCCA 59.678 50.000 0.00 0.00 0.00 5.36
4972 5836 1.535462 CGTACCAGCCCACTTTTCTTG 59.465 52.381 0.00 0.00 0.00 3.02
4985 5849 7.843973 CCACTTTTCTTGTGTGCTTTGAGCA 62.844 44.000 0.00 0.00 43.05 4.26
5009 5873 3.558109 GCTTGTGTTCCTTTAGAGCTCCT 60.558 47.826 10.93 0.10 0.00 3.69
5081 8430 8.880878 TTTTCTTTTCTTTTTAGGGCATGTAC 57.119 30.769 0.00 0.00 0.00 2.90
5082 8431 7.589958 TTCTTTTCTTTTTAGGGCATGTACA 57.410 32.000 0.00 0.00 0.00 2.90
5083 8432 7.589958 TCTTTTCTTTTTAGGGCATGTACAA 57.410 32.000 0.00 0.00 0.00 2.41
5084 8433 8.189119 TCTTTTCTTTTTAGGGCATGTACAAT 57.811 30.769 0.00 0.00 0.00 2.71
5085 8434 8.087750 TCTTTTCTTTTTAGGGCATGTACAATG 58.912 33.333 0.00 0.12 0.00 2.82
5086 8435 5.323371 TCTTTTTAGGGCATGTACAATGC 57.677 39.130 17.01 17.01 43.85 3.56
5087 8436 4.769488 TCTTTTTAGGGCATGTACAATGCA 59.231 37.500 22.92 0.00 46.21 3.96
5089 8438 6.605194 TCTTTTTAGGGCATGTACAATGCATA 59.395 34.615 22.92 15.58 46.21 3.14
5090 8439 6.389830 TTTTAGGGCATGTACAATGCATAG 57.610 37.500 22.92 2.93 46.21 2.23
5091 8440 2.233271 AGGGCATGTACAATGCATAGC 58.767 47.619 22.92 11.42 46.21 2.97
5092 8441 1.270550 GGGCATGTACAATGCATAGCC 59.729 52.381 22.92 16.30 46.21 3.93
5097 8446 4.556104 GCATGTACAATGCATAGCCTCAAG 60.556 45.833 19.12 0.00 44.00 3.02
5100 8449 2.372264 ACAATGCATAGCCTCAAGGTG 58.628 47.619 0.00 0.00 37.57 4.00
5102 8451 3.220110 CAATGCATAGCCTCAAGGTGAT 58.780 45.455 0.00 0.00 37.57 3.06
5103 8452 2.336945 TGCATAGCCTCAAGGTGATG 57.663 50.000 0.00 3.41 37.57 3.07
5104 8453 0.950116 GCATAGCCTCAAGGTGATGC 59.050 55.000 16.47 16.47 43.18 3.91
5119 8468 2.588989 TGCCTCGCATGCCATGTA 59.411 55.556 13.15 0.00 31.71 2.29
5120 8469 1.524393 TGCCTCGCATGCCATGTAG 60.524 57.895 13.15 4.55 31.71 2.74
5121 8470 2.256591 GCCTCGCATGCCATGTAGG 61.257 63.158 18.53 18.53 38.09 3.18
5123 8472 0.035881 CCTCGCATGCCATGTAGGAT 59.964 55.000 18.19 0.00 41.22 3.24
5124 8473 1.436600 CTCGCATGCCATGTAGGATC 58.563 55.000 13.15 0.00 41.22 3.36
5125 8474 0.319813 TCGCATGCCATGTAGGATCG 60.320 55.000 13.15 0.23 41.22 3.69
5126 8475 1.293963 CGCATGCCATGTAGGATCGG 61.294 60.000 13.15 0.00 41.22 4.18
5128 8477 1.339438 GCATGCCATGTAGGATCGGAT 60.339 52.381 6.36 0.00 41.22 4.18
5130 8479 3.432749 GCATGCCATGTAGGATCGGATAT 60.433 47.826 6.36 0.00 41.22 1.63
5131 8480 3.893326 TGCCATGTAGGATCGGATATG 57.107 47.619 0.00 0.00 41.22 1.78
5132 8481 3.440127 TGCCATGTAGGATCGGATATGA 58.560 45.455 0.00 0.00 41.22 2.15
5133 8482 3.195610 TGCCATGTAGGATCGGATATGAC 59.804 47.826 0.00 0.00 41.22 3.06
5135 8484 3.444034 CCATGTAGGATCGGATATGACGT 59.556 47.826 0.00 0.00 41.22 4.34
5137 8486 5.124936 CCATGTAGGATCGGATATGACGTAA 59.875 44.000 0.00 0.00 41.22 3.18
5138 8487 6.349860 CCATGTAGGATCGGATATGACGTAAA 60.350 42.308 0.00 0.00 41.22 2.01
5139 8488 6.250344 TGTAGGATCGGATATGACGTAAAG 57.750 41.667 0.00 0.00 0.00 1.85
5141 8490 6.936335 TGTAGGATCGGATATGACGTAAAGTA 59.064 38.462 0.00 0.00 0.00 2.24
5142 8491 6.497785 AGGATCGGATATGACGTAAAGTAG 57.502 41.667 0.00 0.00 0.00 2.57
5143 8492 5.415077 AGGATCGGATATGACGTAAAGTAGG 59.585 44.000 0.00 0.00 0.00 3.18
5144 8493 5.182760 GGATCGGATATGACGTAAAGTAGGT 59.817 44.000 0.00 0.00 0.00 3.08
5145 8494 6.294397 GGATCGGATATGACGTAAAGTAGGTT 60.294 42.308 0.00 0.00 0.00 3.50
5146 8495 6.064846 TCGGATATGACGTAAAGTAGGTTC 57.935 41.667 0.00 0.00 0.00 3.62
5147 8496 4.908156 CGGATATGACGTAAAGTAGGTTCG 59.092 45.833 0.00 0.00 0.00 3.95
5148 8497 5.218139 GGATATGACGTAAAGTAGGTTCGG 58.782 45.833 0.00 0.00 0.00 4.30
5149 8498 5.009010 GGATATGACGTAAAGTAGGTTCGGA 59.991 44.000 0.00 0.00 0.00 4.55
5150 8499 4.996788 ATGACGTAAAGTAGGTTCGGAT 57.003 40.909 0.00 0.00 0.00 4.18
5152 8501 5.490139 TGACGTAAAGTAGGTTCGGATAG 57.510 43.478 0.00 0.00 0.00 2.08
5153 8502 4.336433 TGACGTAAAGTAGGTTCGGATAGG 59.664 45.833 0.00 0.00 0.00 2.57
5154 8503 3.633986 ACGTAAAGTAGGTTCGGATAGGG 59.366 47.826 0.00 0.00 0.00 3.53
5157 8506 5.506982 CGTAAAGTAGGTTCGGATAGGGAAG 60.507 48.000 0.00 0.00 0.00 3.46
5158 8507 2.317973 AGTAGGTTCGGATAGGGAAGC 58.682 52.381 0.00 0.00 41.06 3.86
5159 8508 1.000496 GTAGGTTCGGATAGGGAAGCG 60.000 57.143 0.00 0.00 44.35 4.68
5160 8509 1.069258 GGTTCGGATAGGGAAGCGG 59.931 63.158 0.00 0.00 32.96 5.52
5163 8512 0.471211 TTCGGATAGGGAAGCGGGAT 60.471 55.000 0.00 0.00 0.00 3.85
5164 8513 0.898789 TCGGATAGGGAAGCGGGATC 60.899 60.000 0.00 0.00 0.00 3.36
5165 8514 1.889530 CGGATAGGGAAGCGGGATCC 61.890 65.000 1.92 1.92 36.16 3.36
5167 8516 0.899019 GATAGGGAAGCGGGATCCTC 59.101 60.000 12.58 4.01 37.14 3.71
5168 8517 0.489567 ATAGGGAAGCGGGATCCTCT 59.510 55.000 12.58 6.48 37.14 3.69
5169 8518 0.178958 TAGGGAAGCGGGATCCTCTC 60.179 60.000 12.58 0.44 37.14 3.20
5170 8519 2.512355 GGGAAGCGGGATCCTCTCC 61.512 68.421 12.58 11.82 44.11 3.71
5171 8520 1.762460 GGAAGCGGGATCCTCTCCA 60.762 63.158 12.58 0.00 46.98 3.86
5173 8522 1.753368 GAAGCGGGATCCTCTCCAGG 61.753 65.000 12.58 0.00 46.98 4.45
5182 8531 3.307445 CTCTCCAGGAGGCAGGTG 58.693 66.667 17.10 0.00 38.35 4.00
5183 8532 3.005539 TCTCCAGGAGGCAGGTGC 61.006 66.667 17.10 0.00 41.14 5.01
5184 8533 3.007920 CTCCAGGAGGCAGGTGCT 61.008 66.667 8.88 0.00 41.70 4.40
5185 8534 2.530151 TCCAGGAGGCAGGTGCTT 60.530 61.111 1.26 0.00 41.70 3.91
5186 8535 2.360852 CCAGGAGGCAGGTGCTTG 60.361 66.667 1.26 0.00 41.70 4.01
5191 8540 0.676151 GGAGGCAGGTGCTTGAAGAG 60.676 60.000 0.00 0.00 41.70 2.85
5192 8541 0.322975 GAGGCAGGTGCTTGAAGAGA 59.677 55.000 0.00 0.00 41.70 3.10
5193 8542 0.767375 AGGCAGGTGCTTGAAGAGAA 59.233 50.000 0.00 0.00 41.70 2.87
5194 8543 1.143684 AGGCAGGTGCTTGAAGAGAAA 59.856 47.619 0.00 0.00 41.70 2.52
5195 8544 1.956477 GGCAGGTGCTTGAAGAGAAAA 59.044 47.619 0.00 0.00 41.70 2.29
5196 8545 2.362077 GGCAGGTGCTTGAAGAGAAAAA 59.638 45.455 0.00 0.00 41.70 1.94
5198 8547 3.067320 GCAGGTGCTTGAAGAGAAAAAGT 59.933 43.478 0.00 0.00 38.21 2.66
5199 8548 4.604976 CAGGTGCTTGAAGAGAAAAAGTG 58.395 43.478 0.00 0.00 0.00 3.16
5200 8549 4.096984 CAGGTGCTTGAAGAGAAAAAGTGT 59.903 41.667 0.00 0.00 0.00 3.55
5201 8550 4.096984 AGGTGCTTGAAGAGAAAAAGTGTG 59.903 41.667 0.00 0.00 0.00 3.82
5202 8551 4.354587 GTGCTTGAAGAGAAAAAGTGTGG 58.645 43.478 0.00 0.00 0.00 4.17
5203 8552 4.016444 TGCTTGAAGAGAAAAAGTGTGGT 58.984 39.130 0.00 0.00 0.00 4.16
5204 8553 4.096382 TGCTTGAAGAGAAAAAGTGTGGTC 59.904 41.667 0.00 0.00 0.00 4.02
5205 8554 4.498177 GCTTGAAGAGAAAAAGTGTGGTCC 60.498 45.833 0.00 0.00 0.00 4.46
5206 8555 3.202906 TGAAGAGAAAAAGTGTGGTCCG 58.797 45.455 0.00 0.00 0.00 4.79
5207 8556 2.256117 AGAGAAAAAGTGTGGTCCGG 57.744 50.000 0.00 0.00 0.00 5.14
5208 8557 1.489230 AGAGAAAAAGTGTGGTCCGGT 59.511 47.619 0.00 0.00 0.00 5.28
5210 8559 1.210967 AGAAAAAGTGTGGTCCGGTGA 59.789 47.619 0.00 0.00 0.00 4.02
5212 8561 0.253610 AAAAGTGTGGTCCGGTGACA 59.746 50.000 0.00 0.00 43.65 3.58
5213 8562 0.253610 AAAGTGTGGTCCGGTGACAA 59.746 50.000 0.00 0.00 43.65 3.18
5214 8563 0.253610 AAGTGTGGTCCGGTGACAAA 59.746 50.000 0.00 0.00 43.65 2.83
5215 8564 0.253610 AGTGTGGTCCGGTGACAAAA 59.746 50.000 0.00 0.00 43.65 2.44
5216 8565 0.661020 GTGTGGTCCGGTGACAAAAG 59.339 55.000 0.00 0.00 43.65 2.27
5217 8566 0.464735 TGTGGTCCGGTGACAAAAGG 60.465 55.000 0.00 0.00 43.65 3.11
5218 8567 0.464916 GTGGTCCGGTGACAAAAGGT 60.465 55.000 0.00 0.00 43.65 3.50
5220 8569 0.179040 GGTCCGGTGACAAAAGGTGA 60.179 55.000 0.00 0.00 43.65 4.02
5221 8570 1.670791 GTCCGGTGACAAAAGGTGAA 58.329 50.000 0.00 0.00 41.37 3.18
5226 8575 3.181480 CCGGTGACAAAAGGTGAAAATGT 60.181 43.478 0.00 0.00 0.00 2.71
5227 8576 4.429108 CGGTGACAAAAGGTGAAAATGTT 58.571 39.130 0.00 0.00 0.00 2.71
5228 8577 4.267452 CGGTGACAAAAGGTGAAAATGTTG 59.733 41.667 0.00 0.00 0.00 3.33
5231 8580 5.519927 GTGACAAAAGGTGAAAATGTTGGAG 59.480 40.000 0.00 0.00 0.00 3.86
5232 8581 5.186797 TGACAAAAGGTGAAAATGTTGGAGT 59.813 36.000 0.00 0.00 0.00 3.85
5235 8584 5.930837 AAAGGTGAAAATGTTGGAGTGAA 57.069 34.783 0.00 0.00 0.00 3.18
5237 8586 5.930837 AGGTGAAAATGTTGGAGTGAAAA 57.069 34.783 0.00 0.00 0.00 2.29
5238 8587 6.293004 AGGTGAAAATGTTGGAGTGAAAAA 57.707 33.333 0.00 0.00 0.00 1.94
5239 8588 6.888105 AGGTGAAAATGTTGGAGTGAAAAAT 58.112 32.000 0.00 0.00 0.00 1.82
5240 8589 8.017418 AGGTGAAAATGTTGGAGTGAAAAATA 57.983 30.769 0.00 0.00 0.00 1.40
5241 8590 8.143835 AGGTGAAAATGTTGGAGTGAAAAATAG 58.856 33.333 0.00 0.00 0.00 1.73
5242 8591 8.141268 GGTGAAAATGTTGGAGTGAAAAATAGA 58.859 33.333 0.00 0.00 0.00 1.98
5243 8592 9.185192 GTGAAAATGTTGGAGTGAAAAATAGAG 57.815 33.333 0.00 0.00 0.00 2.43
5246 8595 9.918630 AAAATGTTGGAGTGAAAAATAGAGATG 57.081 29.630 0.00 0.00 0.00 2.90
5247 8596 6.500684 TGTTGGAGTGAAAAATAGAGATGC 57.499 37.500 0.00 0.00 0.00 3.91
5248 8597 6.003326 TGTTGGAGTGAAAAATAGAGATGCA 58.997 36.000 0.00 0.00 0.00 3.96
5249 8598 6.660521 TGTTGGAGTGAAAAATAGAGATGCAT 59.339 34.615 0.00 0.00 0.00 3.96
5252 8601 6.094464 TGGAGTGAAAAATAGAGATGCATGTG 59.906 38.462 2.46 0.00 0.00 3.21
5254 8603 7.280876 GGAGTGAAAAATAGAGATGCATGTGTA 59.719 37.037 2.46 2.80 0.00 2.90
5257 8606 9.098355 GTGAAAAATAGAGATGCATGTGTACTA 57.902 33.333 2.46 0.00 0.00 1.82
5258 8607 9.317936 TGAAAAATAGAGATGCATGTGTACTAG 57.682 33.333 2.46 0.00 0.00 2.57
5259 8608 9.534565 GAAAAATAGAGATGCATGTGTACTAGA 57.465 33.333 2.46 0.00 0.00 2.43
5260 8609 9.539825 AAAAATAGAGATGCATGTGTACTAGAG 57.460 33.333 2.46 0.00 0.00 2.43
5261 8610 7.831691 AATAGAGATGCATGTGTACTAGAGT 57.168 36.000 2.46 0.00 0.00 3.24
5262 8611 5.766150 AGAGATGCATGTGTACTAGAGTC 57.234 43.478 2.46 0.00 0.00 3.36
5263 8612 5.445069 AGAGATGCATGTGTACTAGAGTCT 58.555 41.667 2.46 0.00 0.00 3.24
5264 8613 5.890985 AGAGATGCATGTGTACTAGAGTCTT 59.109 40.000 2.46 0.00 0.00 3.01
5265 8614 6.379703 AGAGATGCATGTGTACTAGAGTCTTT 59.620 38.462 2.46 0.00 0.00 2.52
5266 8615 7.558081 AGAGATGCATGTGTACTAGAGTCTTTA 59.442 37.037 2.46 0.00 0.00 1.85
5267 8616 8.243961 AGATGCATGTGTACTAGAGTCTTTAT 57.756 34.615 2.46 0.00 0.00 1.40
5268 8617 8.700051 AGATGCATGTGTACTAGAGTCTTTATT 58.300 33.333 2.46 0.00 0.00 1.40
5270 8619 9.672673 ATGCATGTGTACTAGAGTCTTTATTTT 57.327 29.630 0.00 0.00 0.00 1.82
5271 8620 9.151471 TGCATGTGTACTAGAGTCTTTATTTTC 57.849 33.333 0.00 0.00 0.00 2.29
5272 8621 9.372369 GCATGTGTACTAGAGTCTTTATTTTCT 57.628 33.333 0.00 0.00 0.00 2.52
5292 8641 8.650143 TTTTCTATTTCTTAATGAAGCCCACT 57.350 30.769 0.00 0.00 35.89 4.00
5293 8642 9.747898 TTTTCTATTTCTTAATGAAGCCCACTA 57.252 29.630 0.00 0.00 35.89 2.74
5294 8643 8.964476 TTCTATTTCTTAATGAAGCCCACTAG 57.036 34.615 0.00 0.00 35.89 2.57
5295 8644 8.090788 TCTATTTCTTAATGAAGCCCACTAGT 57.909 34.615 0.00 0.00 35.89 2.57
5296 8645 7.987458 TCTATTTCTTAATGAAGCCCACTAGTG 59.013 37.037 16.34 16.34 35.89 2.74
5297 8646 5.253330 TTTCTTAATGAAGCCCACTAGTGG 58.747 41.667 31.71 31.71 41.98 4.00
5298 8647 5.222048 TTTCTTAATGAAGCCCACTAGTGGT 60.222 40.000 34.49 20.47 41.35 4.16
5300 8649 7.796916 TTTCTTAATGAAGCCCACTAGTGGTAG 60.797 40.741 34.49 23.55 41.35 3.18
5307 8656 2.698855 CCACTAGTGGTAGCTTGCAT 57.301 50.000 30.57 0.00 45.53 3.96
5308 8657 2.991250 CCACTAGTGGTAGCTTGCATT 58.009 47.619 30.57 0.00 45.53 3.56
5309 8658 2.679837 CCACTAGTGGTAGCTTGCATTG 59.320 50.000 30.57 3.32 45.53 2.82
5311 8660 2.292267 CTAGTGGTAGCTTGCATTGGG 58.708 52.381 0.00 0.00 0.00 4.12
5312 8661 0.323725 AGTGGTAGCTTGCATTGGGG 60.324 55.000 0.00 0.00 0.00 4.96
5314 8663 0.034186 TGGTAGCTTGCATTGGGGAG 60.034 55.000 0.00 0.00 0.00 4.30
5315 8664 0.255890 GGTAGCTTGCATTGGGGAGA 59.744 55.000 0.00 0.00 0.00 3.71
5316 8665 1.340991 GGTAGCTTGCATTGGGGAGAA 60.341 52.381 0.00 0.00 0.00 2.87
5317 8666 2.446435 GTAGCTTGCATTGGGGAGAAA 58.554 47.619 0.00 0.00 0.00 2.52
5319 8668 2.328319 AGCTTGCATTGGGGAGAAAAA 58.672 42.857 0.00 0.00 0.00 1.94
5348 8697 9.830975 AAATGTAAGTGCCTCAAATTACTTTTT 57.169 25.926 0.00 0.00 34.49 1.94
5349 8698 8.816640 ATGTAAGTGCCTCAAATTACTTTTTG 57.183 30.769 0.00 0.00 37.83 2.44
5350 8699 7.777095 TGTAAGTGCCTCAAATTACTTTTTGT 58.223 30.769 0.00 0.00 37.73 2.83
5353 8702 7.054491 AGTGCCTCAAATTACTTTTTGTCAT 57.946 32.000 0.00 0.00 37.73 3.06
5354 8703 6.925165 AGTGCCTCAAATTACTTTTTGTCATG 59.075 34.615 0.00 0.00 37.73 3.07
5355 8704 6.922957 GTGCCTCAAATTACTTTTTGTCATGA 59.077 34.615 0.00 0.00 37.73 3.07
5356 8705 7.115378 GTGCCTCAAATTACTTTTTGTCATGAG 59.885 37.037 0.00 0.00 37.73 2.90
5357 8706 7.014134 TGCCTCAAATTACTTTTTGTCATGAGA 59.986 33.333 0.00 0.00 37.73 3.27
5376 8725 5.341169 TGAGACATATGTATCCCTATGCCA 58.659 41.667 23.95 4.40 35.55 4.92
5377 8726 5.187772 TGAGACATATGTATCCCTATGCCAC 59.812 44.000 23.95 1.70 35.55 5.01
5380 8729 4.790246 ACATATGTATCCCTATGCCACCAT 59.210 41.667 6.56 0.00 35.44 3.55
5381 8730 5.253798 ACATATGTATCCCTATGCCACCATT 59.746 40.000 6.56 0.00 32.85 3.16
5382 8731 3.507162 TGTATCCCTATGCCACCATTG 57.493 47.619 0.00 0.00 32.85 2.82
5383 8732 2.782925 TGTATCCCTATGCCACCATTGT 59.217 45.455 0.00 0.00 32.85 2.71
5386 8735 2.200955 TCCCTATGCCACCATTGTACA 58.799 47.619 0.00 0.00 32.85 2.90
5387 8736 2.782925 TCCCTATGCCACCATTGTACAT 59.217 45.455 0.00 0.00 32.85 2.29
5388 8737 2.886523 CCCTATGCCACCATTGTACATG 59.113 50.000 0.00 0.00 32.85 3.21
5389 8738 2.294233 CCTATGCCACCATTGTACATGC 59.706 50.000 0.00 0.00 32.85 4.06
5390 8739 1.113788 ATGCCACCATTGTACATGCC 58.886 50.000 0.00 0.00 0.00 4.40
5391 8740 0.969917 TGCCACCATTGTACATGCCC 60.970 55.000 0.00 0.00 0.00 5.36
5392 8741 0.684153 GCCACCATTGTACATGCCCT 60.684 55.000 0.00 0.00 0.00 5.19
5393 8742 1.851304 CCACCATTGTACATGCCCTT 58.149 50.000 0.00 0.00 0.00 3.95
5394 8743 2.948147 GCCACCATTGTACATGCCCTTA 60.948 50.000 0.00 0.00 0.00 2.69
5419 8896 1.021968 CCCCTGCGCTTAATTGTACC 58.978 55.000 9.73 0.00 0.00 3.34
5427 8904 2.535984 CGCTTAATTGTACCGAGAGCTG 59.464 50.000 0.00 0.00 0.00 4.24
5512 8990 4.641989 AGTGTGACTGAAGCTGTTCAAAAT 59.358 37.500 0.00 0.00 42.27 1.82
5573 9055 2.011947 CATGGCAGTGATCGTCATGTT 58.988 47.619 5.74 0.00 32.86 2.71
5584 9066 5.678483 GTGATCGTCATGTTTACAATCATGC 59.322 40.000 7.76 4.01 40.54 4.06
5587 9069 3.727376 CGTCATGTTTACAATCATGCGCA 60.727 43.478 14.96 14.96 40.54 6.09
5695 9178 6.070767 TGTTCCCAGGTTTTGTCATTTGTAAA 60.071 34.615 0.00 0.00 0.00 2.01
5697 9180 6.578023 TCCCAGGTTTTGTCATTTGTAAAAG 58.422 36.000 0.00 0.00 0.00 2.27
5699 9182 6.701400 CCCAGGTTTTGTCATTTGTAAAAGAG 59.299 38.462 0.00 0.00 0.00 2.85
5723 9212 2.199291 AATAGACGGGTCGTTTAGCG 57.801 50.000 0.00 0.00 41.37 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.445786 TTCAAGTCAAAACTCGAAACATAAATC 57.554 29.630 0.00 0.00 33.48 2.17
66 67 6.017192 CACACAAATCAATGTAGGTTCTCACA 60.017 38.462 0.00 0.00 30.84 3.58
67 68 6.204688 TCACACAAATCAATGTAGGTTCTCAC 59.795 38.462 0.00 0.00 30.84 3.51
138 142 4.379174 GGTGCACCGAACTCATGT 57.621 55.556 22.49 0.00 0.00 3.21
160 164 1.008079 GCACTGAAGCTTGTGGTGC 60.008 57.895 22.94 22.94 44.53 5.01
174 178 6.610075 ATTTGGAAAATTATCTGGTGCACT 57.390 33.333 17.98 0.00 0.00 4.40
187 191 3.638627 GCCTGGCTAGCTATTTGGAAAAT 59.361 43.478 15.72 0.00 0.00 1.82
190 194 1.563879 TGCCTGGCTAGCTATTTGGAA 59.436 47.619 21.03 0.00 0.00 3.53
191 195 1.212375 TGCCTGGCTAGCTATTTGGA 58.788 50.000 21.03 0.00 0.00 3.53
193 197 3.137446 AGATGCCTGGCTAGCTATTTG 57.863 47.619 21.03 1.36 0.00 2.32
196 200 3.464720 TCTAGATGCCTGGCTAGCTAT 57.535 47.619 21.03 3.95 35.26 2.97
197 201 2.980246 TCTAGATGCCTGGCTAGCTA 57.020 50.000 21.03 16.14 35.26 3.32
198 202 2.178580 GATCTAGATGCCTGGCTAGCT 58.821 52.381 21.03 15.88 35.26 3.32
199 203 2.094078 CAGATCTAGATGCCTGGCTAGC 60.094 54.545 21.03 6.04 35.26 3.42
200 204 3.164268 ACAGATCTAGATGCCTGGCTAG 58.836 50.000 21.03 13.21 36.33 3.42
201 205 3.251016 ACAGATCTAGATGCCTGGCTA 57.749 47.619 21.03 6.76 0.00 3.93
202 206 2.100128 ACAGATCTAGATGCCTGGCT 57.900 50.000 21.03 5.22 0.00 4.75
205 209 5.718724 TCACATACAGATCTAGATGCCTG 57.281 43.478 10.74 14.20 0.00 4.85
208 212 6.861144 TGCTATCACATACAGATCTAGATGC 58.139 40.000 10.74 3.00 0.00 3.91
212 216 6.264841 TGCTGCTATCACATACAGATCTAG 57.735 41.667 0.00 0.00 31.67 2.43
213 217 6.491403 TCTTGCTGCTATCACATACAGATCTA 59.509 38.462 0.00 0.00 31.67 1.98
219 223 5.343307 TCTTCTTGCTGCTATCACATACA 57.657 39.130 0.00 0.00 0.00 2.29
239 243 5.463154 ACTGAGGGAGTAGCTATTTGATCT 58.537 41.667 0.00 0.00 30.86 2.75
240 244 5.799827 ACTGAGGGAGTAGCTATTTGATC 57.200 43.478 0.00 0.00 30.86 2.92
242 246 4.098044 CGAACTGAGGGAGTAGCTATTTGA 59.902 45.833 0.00 0.00 33.09 2.69
243 247 4.363999 CGAACTGAGGGAGTAGCTATTTG 58.636 47.826 0.00 0.00 33.09 2.32
244 248 3.385111 CCGAACTGAGGGAGTAGCTATTT 59.615 47.826 0.00 0.00 33.09 1.40
246 250 2.175069 TCCGAACTGAGGGAGTAGCTAT 59.825 50.000 0.00 0.00 33.09 2.97
248 252 0.331954 TCCGAACTGAGGGAGTAGCT 59.668 55.000 0.00 0.00 33.09 3.32
249 253 1.183549 TTCCGAACTGAGGGAGTAGC 58.816 55.000 0.00 0.00 33.09 3.58
250 254 4.645588 AGTAATTCCGAACTGAGGGAGTAG 59.354 45.833 0.00 0.00 33.09 2.57
251 255 4.607239 AGTAATTCCGAACTGAGGGAGTA 58.393 43.478 0.00 0.00 33.09 2.59
252 256 3.442076 AGTAATTCCGAACTGAGGGAGT 58.558 45.455 0.00 0.00 35.94 3.85
253 257 4.184629 CAAGTAATTCCGAACTGAGGGAG 58.815 47.826 0.00 0.00 33.01 4.30
254 258 3.581332 ACAAGTAATTCCGAACTGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
257 261 4.090066 CACGACAAGTAATTCCGAACTGAG 59.910 45.833 0.00 0.00 0.00 3.35
258 262 3.985279 CACGACAAGTAATTCCGAACTGA 59.015 43.478 0.00 0.00 0.00 3.41
261 265 4.977741 TTCACGACAAGTAATTCCGAAC 57.022 40.909 0.00 0.00 0.00 3.95
262 266 5.987777 TTTTCACGACAAGTAATTCCGAA 57.012 34.783 0.00 0.00 0.00 4.30
264 268 5.086058 CCATTTTCACGACAAGTAATTCCG 58.914 41.667 0.00 0.00 0.00 4.30
265 269 6.249035 TCCATTTTCACGACAAGTAATTCC 57.751 37.500 0.00 0.00 0.00 3.01
266 270 7.305474 ACATCCATTTTCACGACAAGTAATTC 58.695 34.615 0.00 0.00 0.00 2.17
270 274 7.327975 AGATACATCCATTTTCACGACAAGTA 58.672 34.615 0.00 0.00 0.00 2.24
271 275 6.173339 AGATACATCCATTTTCACGACAAGT 58.827 36.000 0.00 0.00 0.00 3.16
273 277 7.552459 TCTAGATACATCCATTTTCACGACAA 58.448 34.615 0.00 0.00 0.00 3.18
274 278 7.107639 TCTAGATACATCCATTTTCACGACA 57.892 36.000 0.00 0.00 0.00 4.35
275 279 7.653713 ACATCTAGATACATCCATTTTCACGAC 59.346 37.037 4.54 0.00 0.00 4.34
276 280 7.726216 ACATCTAGATACATCCATTTTCACGA 58.274 34.615 4.54 0.00 0.00 4.35
277 281 7.953158 ACATCTAGATACATCCATTTTCACG 57.047 36.000 4.54 0.00 0.00 4.35
303 307 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
304 308 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
305 309 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
306 310 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
307 311 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
308 312 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
309 313 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
310 314 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
311 315 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
312 316 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
313 317 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
314 318 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
315 319 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
316 320 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
317 321 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
318 322 6.683974 AATTACTTGTCTCGGAAATGGATG 57.316 37.500 0.00 0.00 0.00 3.51
319 323 6.884295 TGAAATTACTTGTCTCGGAAATGGAT 59.116 34.615 0.00 0.00 0.00 3.41
320 324 6.234920 TGAAATTACTTGTCTCGGAAATGGA 58.765 36.000 0.00 0.00 0.00 3.41
321 325 6.494893 TGAAATTACTTGTCTCGGAAATGG 57.505 37.500 0.00 0.00 0.00 3.16
322 326 7.059488 CGTTTGAAATTACTTGTCTCGGAAATG 59.941 37.037 0.00 0.00 0.00 2.32
323 327 7.075741 CGTTTGAAATTACTTGTCTCGGAAAT 58.924 34.615 0.00 0.00 0.00 2.17
324 328 6.423862 CGTTTGAAATTACTTGTCTCGGAAA 58.576 36.000 0.00 0.00 0.00 3.13
325 329 5.049954 CCGTTTGAAATTACTTGTCTCGGAA 60.050 40.000 0.00 0.00 35.94 4.30
326 330 4.449743 CCGTTTGAAATTACTTGTCTCGGA 59.550 41.667 0.00 0.00 35.94 4.55
327 331 4.449743 TCCGTTTGAAATTACTTGTCTCGG 59.550 41.667 0.00 0.00 35.35 4.63
328 332 5.389516 CCTCCGTTTGAAATTACTTGTCTCG 60.390 44.000 0.00 0.00 0.00 4.04
329 333 5.106673 CCCTCCGTTTGAAATTACTTGTCTC 60.107 44.000 0.00 0.00 0.00 3.36
330 334 4.760204 CCCTCCGTTTGAAATTACTTGTCT 59.240 41.667 0.00 0.00 0.00 3.41
331 335 4.758165 TCCCTCCGTTTGAAATTACTTGTC 59.242 41.667 0.00 0.00 0.00 3.18
332 336 4.721132 TCCCTCCGTTTGAAATTACTTGT 58.279 39.130 0.00 0.00 0.00 3.16
333 337 4.760204 ACTCCCTCCGTTTGAAATTACTTG 59.240 41.667 0.00 0.00 0.00 3.16
334 338 4.981812 ACTCCCTCCGTTTGAAATTACTT 58.018 39.130 0.00 0.00 0.00 2.24
335 339 4.635699 ACTCCCTCCGTTTGAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
336 340 5.485620 ACTACTCCCTCCGTTTGAAATTAC 58.514 41.667 0.00 0.00 0.00 1.89
337 341 5.750352 ACTACTCCCTCCGTTTGAAATTA 57.250 39.130 0.00 0.00 0.00 1.40
338 342 4.635699 ACTACTCCCTCCGTTTGAAATT 57.364 40.909 0.00 0.00 0.00 1.82
339 343 4.635699 AACTACTCCCTCCGTTTGAAAT 57.364 40.909 0.00 0.00 0.00 2.17
340 344 4.262592 GGTAACTACTCCCTCCGTTTGAAA 60.263 45.833 0.00 0.00 0.00 2.69
341 345 3.259123 GGTAACTACTCCCTCCGTTTGAA 59.741 47.826 0.00 0.00 0.00 2.69
342 346 2.827921 GGTAACTACTCCCTCCGTTTGA 59.172 50.000 0.00 0.00 0.00 2.69
343 347 2.564062 TGGTAACTACTCCCTCCGTTTG 59.436 50.000 0.00 0.00 37.61 2.93
344 348 2.893424 TGGTAACTACTCCCTCCGTTT 58.107 47.619 0.00 0.00 37.61 3.60
345 349 2.610438 TGGTAACTACTCCCTCCGTT 57.390 50.000 0.00 0.00 37.61 4.44
346 350 2.385803 CATGGTAACTACTCCCTCCGT 58.614 52.381 0.00 0.00 37.61 4.69
347 351 1.068741 GCATGGTAACTACTCCCTCCG 59.931 57.143 0.00 0.00 37.61 4.63
348 352 2.116238 TGCATGGTAACTACTCCCTCC 58.884 52.381 0.00 0.00 37.61 4.30
349 353 3.906720 TTGCATGGTAACTACTCCCTC 57.093 47.619 0.00 0.00 37.61 4.30
350 354 4.862641 ATTTGCATGGTAACTACTCCCT 57.137 40.909 0.00 0.00 37.61 4.20
351 355 6.017109 CACATATTTGCATGGTAACTACTCCC 60.017 42.308 0.00 0.00 37.61 4.30
352 356 6.017109 CCACATATTTGCATGGTAACTACTCC 60.017 42.308 0.00 0.00 37.61 3.85
353 357 6.017109 CCCACATATTTGCATGGTAACTACTC 60.017 42.308 0.00 0.00 37.61 2.59
354 358 5.827797 CCCACATATTTGCATGGTAACTACT 59.172 40.000 0.00 0.00 37.61 2.57
355 359 5.592688 ACCCACATATTTGCATGGTAACTAC 59.407 40.000 0.00 0.00 37.61 2.73
359 363 3.131933 GCACCCACATATTTGCATGGTAA 59.868 43.478 0.00 0.00 34.97 2.85
370 374 1.068083 CTCTCGCGCACCCACATAT 59.932 57.895 8.75 0.00 0.00 1.78
409 413 3.242870 CGCTAGAATGGAAAACAGATGGC 60.243 47.826 0.00 0.00 0.00 4.40
415 419 3.568007 AGCAAACGCTAGAATGGAAAACA 59.432 39.130 0.00 0.00 38.21 2.83
421 425 1.737838 TGGAGCAAACGCTAGAATGG 58.262 50.000 0.00 0.00 40.78 3.16
423 427 3.378427 GGATTTGGAGCAAACGCTAGAAT 59.622 43.478 0.00 0.00 40.78 2.40
433 437 1.619654 CACCACAGGATTTGGAGCAA 58.380 50.000 0.00 0.00 37.58 3.91
506 538 3.411517 CTGGGCCCTGGTGGTAGG 61.412 72.222 25.70 0.00 37.59 3.18
510 542 2.843912 GATCAACTGGGCCCTGGTGG 62.844 65.000 37.85 26.10 34.08 4.61
512 544 2.616458 GGATCAACTGGGCCCTGGT 61.616 63.158 30.19 23.59 0.00 4.00
513 545 1.867595 AAGGATCAACTGGGCCCTGG 61.868 60.000 30.19 21.31 0.00 4.45
518 550 2.206576 ACAGAAAGGATCAACTGGGC 57.793 50.000 0.00 0.00 35.08 5.36
524 556 5.913137 ACAACAACAACAGAAAGGATCAA 57.087 34.783 0.00 0.00 0.00 2.57
527 559 4.869861 GCAAACAACAACAACAGAAAGGAT 59.130 37.500 0.00 0.00 0.00 3.24
530 562 5.220453 GGATGCAAACAACAACAACAGAAAG 60.220 40.000 0.00 0.00 0.00 2.62
542 574 1.270550 CCACCTCTGGATGCAAACAAC 59.729 52.381 0.00 0.00 40.55 3.32
543 575 1.133513 ACCACCTCTGGATGCAAACAA 60.134 47.619 0.00 0.00 40.55 2.83
544 576 0.478072 ACCACCTCTGGATGCAAACA 59.522 50.000 0.00 0.00 40.55 2.83
545 577 1.270550 CAACCACCTCTGGATGCAAAC 59.729 52.381 0.00 0.00 40.55 2.93
546 578 1.133513 ACAACCACCTCTGGATGCAAA 60.134 47.619 0.00 0.00 42.83 3.68
547 579 0.478072 ACAACCACCTCTGGATGCAA 59.522 50.000 0.00 0.00 42.83 4.08
559 591 4.035278 TCAAATTGACCGAAACAACCAC 57.965 40.909 0.00 0.00 0.00 4.16
570 602 1.901833 ACCTGCCCAATCAAATTGACC 59.098 47.619 0.00 0.00 42.83 4.02
629 1368 0.114168 TTGGGGTTGGGAAGATGTGG 59.886 55.000 0.00 0.00 0.00 4.17
631 1370 0.114364 GGTTGGGGTTGGGAAGATGT 59.886 55.000 0.00 0.00 0.00 3.06
647 1386 3.570975 GTCGTATTCAGGGTTTTTGGGTT 59.429 43.478 0.00 0.00 0.00 4.11
690 1429 3.309954 GTCGTCTGTTTTCTGTTTCTGCT 59.690 43.478 0.00 0.00 0.00 4.24
705 1444 3.027170 GCAACGCATGGGTCGTCTG 62.027 63.158 16.57 11.54 39.48 3.51
706 1445 2.742372 GCAACGCATGGGTCGTCT 60.742 61.111 16.57 0.00 39.48 4.18
707 1446 4.147322 CGCAACGCATGGGTCGTC 62.147 66.667 16.57 7.31 39.48 4.20
734 1477 1.546476 GGAGCTCGTGAAGAAAGAGGA 59.454 52.381 7.83 0.00 35.18 3.71
778 1521 3.560251 CGGGGATGCGGAGGGAAT 61.560 66.667 0.00 0.00 0.00 3.01
876 1625 1.382420 TGTTTGGTGGGCTTGGCTT 60.382 52.632 0.00 0.00 0.00 4.35
877 1626 1.833934 CTGTTTGGTGGGCTTGGCT 60.834 57.895 0.00 0.00 0.00 4.75
878 1627 0.825840 TACTGTTTGGTGGGCTTGGC 60.826 55.000 0.00 0.00 0.00 4.52
879 1628 1.698506 TTACTGTTTGGTGGGCTTGG 58.301 50.000 0.00 0.00 0.00 3.61
880 1629 2.428890 TGTTTACTGTTTGGTGGGCTTG 59.571 45.455 0.00 0.00 0.00 4.01
881 1630 2.741145 TGTTTACTGTTTGGTGGGCTT 58.259 42.857 0.00 0.00 0.00 4.35
882 1631 2.429250 GTTGTTTACTGTTTGGTGGGCT 59.571 45.455 0.00 0.00 0.00 5.19
883 1632 2.166664 TGTTGTTTACTGTTTGGTGGGC 59.833 45.455 0.00 0.00 0.00 5.36
884 1633 4.457834 TTGTTGTTTACTGTTTGGTGGG 57.542 40.909 0.00 0.00 0.00 4.61
1479 2314 1.152839 GGACGAGGAGGAGGAGGAG 60.153 68.421 0.00 0.00 0.00 3.69
1480 2315 1.215679 AAGGACGAGGAGGAGGAGGA 61.216 60.000 0.00 0.00 0.00 3.71
1481 2316 0.753848 GAAGGACGAGGAGGAGGAGG 60.754 65.000 0.00 0.00 0.00 4.30
1482 2317 0.257616 AGAAGGACGAGGAGGAGGAG 59.742 60.000 0.00 0.00 0.00 3.69
1483 2318 0.033991 CAGAAGGACGAGGAGGAGGA 60.034 60.000 0.00 0.00 0.00 3.71
1484 2319 1.040339 CCAGAAGGACGAGGAGGAGG 61.040 65.000 0.00 0.00 36.89 4.30
1485 2320 0.033991 TCCAGAAGGACGAGGAGGAG 60.034 60.000 0.00 0.00 39.61 3.69
1950 2785 2.032528 CCCAAGAGCACGCAGGAA 59.967 61.111 0.00 0.00 0.00 3.36
1971 2806 3.496309 CTTGTGCTGCTCCCCACCA 62.496 63.158 0.00 0.00 0.00 4.17
2004 2839 2.680352 GAGCCCCGTCTCAGACCA 60.680 66.667 0.00 0.00 33.41 4.02
2007 2842 2.060383 CATGGAGCCCCGTCTCAGA 61.060 63.158 0.00 0.00 34.84 3.27
2076 2911 3.233980 TGCAGCACCCTCACGTCT 61.234 61.111 0.00 0.00 0.00 4.18
2106 2941 0.741221 CCTTTACAGGCCTCGTGCTC 60.741 60.000 0.00 0.00 40.92 4.26
2176 3011 2.093973 CCTCCTCGCATTCTACTGTTGT 60.094 50.000 0.00 0.00 0.00 3.32
2385 3220 6.073447 TCATAAGCTTCACCCCTTAAATCA 57.927 37.500 0.00 0.00 0.00 2.57
2387 3222 6.731467 TCTTCATAAGCTTCACCCCTTAAAT 58.269 36.000 0.00 0.00 0.00 1.40
2391 3226 3.054065 CCTCTTCATAAGCTTCACCCCTT 60.054 47.826 0.00 0.00 0.00 3.95
2394 3229 2.505819 TCCCTCTTCATAAGCTTCACCC 59.494 50.000 0.00 0.00 0.00 4.61
2404 3239 1.209504 CTTGGCCGTTCCCTCTTCATA 59.790 52.381 0.00 0.00 0.00 2.15
2427 3262 9.882996 TTAGCAAGATCTTCAATTAATAATGCG 57.117 29.630 4.57 0.00 34.33 4.73
2460 3295 4.572389 TCACTGAGCTTCTTTTCAACAGTC 59.428 41.667 0.00 0.00 35.43 3.51
2470 3305 3.072944 GAGCAACATCACTGAGCTTCTT 58.927 45.455 0.00 0.00 37.39 2.52
2473 3320 2.812591 CAAGAGCAACATCACTGAGCTT 59.187 45.455 0.00 0.00 37.39 3.74
2502 3349 2.820178 TCCTGCTTGTCTCCTACATCA 58.180 47.619 0.00 0.00 38.10 3.07
2704 3551 2.450476 GGAACTGCAACCATCTTCCAT 58.550 47.619 0.00 0.00 32.06 3.41
2720 3567 1.362406 GCTCAGCCTACTTGCGGAAC 61.362 60.000 0.00 0.00 35.06 3.62
2727 3574 1.135915 CGTGATCTGCTCAGCCTACTT 59.864 52.381 0.00 0.00 33.51 2.24
2734 3581 0.810426 ATGCTGCGTGATCTGCTCAG 60.810 55.000 11.02 7.51 33.51 3.35
2814 3661 2.638325 TCTGAGGTTACCCCAAATGGA 58.362 47.619 0.00 0.00 37.39 3.41
2844 3691 1.216710 CCGCTCTCTTGGTGACTCC 59.783 63.158 0.00 0.00 0.00 3.85
2951 3798 5.182570 TCAAAATCCTCTGCAACATCTTCAG 59.817 40.000 0.00 0.00 0.00 3.02
2973 3820 4.644685 TCACGTATGATTGTGGAGAGATCA 59.355 41.667 0.00 0.00 36.74 2.92
2994 3841 0.604780 GCAGCTCAAGTTCAGCCTCA 60.605 55.000 0.00 0.00 37.63 3.86
3219 4066 4.878397 CCACCATCCTCTGTCTGAATAAAC 59.122 45.833 0.00 0.00 0.00 2.01
3243 4090 4.631813 ACTAGATTCATTGACCGCAGAAAC 59.368 41.667 0.00 0.00 0.00 2.78
3507 4354 4.759183 AGAACAAGCAGGACAAGAAAGATC 59.241 41.667 0.00 0.00 0.00 2.75
3672 4520 1.189752 TGACAGATCAGCACCTCTCC 58.810 55.000 0.00 0.00 0.00 3.71
3694 4542 5.048083 TGAAGCACTTATTGAACCCAATGAC 60.048 40.000 0.00 0.00 42.55 3.06
3704 4552 9.230122 TGAAACATATTCTGAAGCACTTATTGA 57.770 29.630 0.00 0.00 0.00 2.57
3706 4554 9.236006 AGTGAAACATATTCTGAAGCACTTATT 57.764 29.630 0.00 0.00 41.43 1.40
3826 4674 0.962356 GGTGGGCACTGATGTTGGAG 60.962 60.000 0.00 0.00 0.00 3.86
3832 4680 1.683943 CAATAGGGTGGGCACTGATG 58.316 55.000 0.00 0.00 0.00 3.07
3890 4738 1.408969 TCCAAACCAAGGGACAAAGC 58.591 50.000 0.00 0.00 0.00 3.51
3898 4746 1.341209 GCAGTTCCTTCCAAACCAAGG 59.659 52.381 0.00 0.00 41.81 3.61
3970 4818 3.951775 AGAGTGATCGATAAGCCCATC 57.048 47.619 0.00 0.00 0.00 3.51
4077 4925 3.356290 AGTAGGTCCATTGATTTGGCAC 58.644 45.455 0.00 0.00 36.66 5.01
4114 4962 1.196354 CTCCTGCTCTTTTTGTCTGCG 59.804 52.381 0.00 0.00 0.00 5.18
4174 5022 3.841643 CAATTGAACCATGAGAGCAACC 58.158 45.455 0.00 0.00 0.00 3.77
4198 5046 1.797964 CGTAGTTACGTAACGGGTCG 58.202 55.000 27.75 24.25 44.13 4.79
4252 5100 2.447443 GGAATGAAAACCCTCTCCACC 58.553 52.381 0.00 0.00 0.00 4.61
4267 5115 0.252193 TCTTGGGCTTTGGGGGAATG 60.252 55.000 0.00 0.00 0.00 2.67
4297 5145 5.984725 TCACTGTTACCTTTCTCTGAAACA 58.015 37.500 0.00 0.00 0.00 2.83
4352 5203 6.208797 TCGACCACCGATGATTTATCTAGAAT 59.791 38.462 0.00 0.00 43.23 2.40
4372 5223 1.743958 TCCATCTTCTCTTCGTCGACC 59.256 52.381 10.58 0.00 0.00 4.79
4373 5224 2.223386 CCTCCATCTTCTCTTCGTCGAC 60.223 54.545 5.18 5.18 0.00 4.20
4374 5225 2.017782 CCTCCATCTTCTCTTCGTCGA 58.982 52.381 0.00 0.00 0.00 4.20
4378 5229 3.699038 AGTCTTCCTCCATCTTCTCTTCG 59.301 47.826 0.00 0.00 0.00 3.79
4384 5235 4.502962 CAACAGAGTCTTCCTCCATCTTC 58.497 47.826 0.00 0.00 41.47 2.87
4390 5241 1.620819 TGAGCAACAGAGTCTTCCTCC 59.379 52.381 0.00 0.00 41.47 4.30
4406 5257 5.626955 GCACTTCTGTGACTTTAAATTGAGC 59.373 40.000 0.00 0.00 46.55 4.26
4408 5259 6.691754 TGCACTTCTGTGACTTTAAATTGA 57.308 33.333 0.00 0.00 46.55 2.57
4438 5289 3.646162 TCTCAGGCTCACTCTTAAAACCA 59.354 43.478 0.00 0.00 0.00 3.67
4464 5315 4.277921 GTGTTTGATTACCCCACGGTTTTA 59.722 41.667 0.00 0.00 40.58 1.52
4516 5367 4.764771 TTGCCCATGCCAGCTCCC 62.765 66.667 0.00 0.00 36.33 4.30
4561 5412 4.348857 GCCTTTGCAGTGGCTTTG 57.651 55.556 20.43 0.00 45.26 2.77
4582 5433 2.621763 CTGACCAGCTGCGTCTTTT 58.378 52.632 25.75 0.92 0.00 2.27
4660 5511 2.362397 CCGCTTAGATCCTGTTAGCTCA 59.638 50.000 0.00 0.00 0.00 4.26
4733 5584 9.223291 AGAACTACTAGTACCTACCTAGAATCA 57.777 37.037 0.00 0.00 0.00 2.57
4831 5683 4.232091 GGATGGGAGGGAGTAAGAACATA 58.768 47.826 0.00 0.00 0.00 2.29
4838 5690 8.414623 TCTATTAATATGGATGGGAGGGAGTAA 58.585 37.037 0.00 0.00 0.00 2.24
4843 5695 5.685075 GCGTCTATTAATATGGATGGGAGGG 60.685 48.000 0.00 0.00 31.04 4.30
4892 5756 8.250332 GGATTTACATGATTTGGCACTTTTAGA 58.750 33.333 0.00 0.00 0.00 2.10
4895 5759 6.767456 TGGATTTACATGATTTGGCACTTTT 58.233 32.000 0.00 0.00 0.00 2.27
4950 5814 1.418637 AGAAAAGTGGGCTGGTACGAA 59.581 47.619 0.00 0.00 0.00 3.85
4963 5827 3.774066 GCTCAAAGCACACAAGAAAAGT 58.226 40.909 0.00 0.00 41.89 2.66
4985 5849 2.373502 AGCTCTAAAGGAACACAAGCCT 59.626 45.455 0.00 0.00 35.61 4.58
5073 8422 2.227388 GAGGCTATGCATTGTACATGCC 59.773 50.000 20.37 7.92 43.94 4.40
5077 8426 3.054434 ACCTTGAGGCTATGCATTGTACA 60.054 43.478 3.54 2.41 39.32 2.90
5078 8427 3.313526 CACCTTGAGGCTATGCATTGTAC 59.686 47.826 3.54 0.42 39.32 2.90
5080 8429 2.025981 TCACCTTGAGGCTATGCATTGT 60.026 45.455 3.54 0.00 39.32 2.71
5081 8430 2.646930 TCACCTTGAGGCTATGCATTG 58.353 47.619 3.54 3.55 39.32 2.82
5082 8431 3.220110 CATCACCTTGAGGCTATGCATT 58.780 45.455 3.54 0.00 39.32 3.56
5083 8432 2.860009 CATCACCTTGAGGCTATGCAT 58.140 47.619 3.79 3.79 39.32 3.96
5084 8433 2.336945 CATCACCTTGAGGCTATGCA 57.663 50.000 0.00 0.00 39.32 3.96
5103 8452 2.256591 CCTACATGGCATGCGAGGC 61.257 63.158 26.96 0.00 32.09 4.70
5104 8453 0.035881 ATCCTACATGGCATGCGAGG 59.964 55.000 30.04 30.04 37.80 4.63
5106 8455 0.319813 CGATCCTACATGGCATGCGA 60.320 55.000 26.70 19.03 35.26 5.10
5107 8456 1.293963 CCGATCCTACATGGCATGCG 61.294 60.000 26.70 19.33 35.26 4.73
5108 8457 0.035317 TCCGATCCTACATGGCATGC 59.965 55.000 26.70 9.90 35.26 4.06
5111 8460 3.195610 GTCATATCCGATCCTACATGGCA 59.804 47.826 0.00 0.00 35.26 4.92
5112 8461 3.735208 CGTCATATCCGATCCTACATGGC 60.735 52.174 0.00 0.00 35.26 4.40
5113 8462 3.444034 ACGTCATATCCGATCCTACATGG 59.556 47.826 0.00 0.00 37.10 3.66
5114 8463 4.703645 ACGTCATATCCGATCCTACATG 57.296 45.455 0.00 0.00 0.00 3.21
5115 8464 6.433404 ACTTTACGTCATATCCGATCCTACAT 59.567 38.462 0.00 0.00 0.00 2.29
5117 8466 6.251655 ACTTTACGTCATATCCGATCCTAC 57.748 41.667 0.00 0.00 0.00 3.18
5118 8467 6.596888 CCTACTTTACGTCATATCCGATCCTA 59.403 42.308 0.00 0.00 0.00 2.94
5119 8468 5.415077 CCTACTTTACGTCATATCCGATCCT 59.585 44.000 0.00 0.00 0.00 3.24
5120 8469 5.182760 ACCTACTTTACGTCATATCCGATCC 59.817 44.000 0.00 0.00 0.00 3.36
5121 8470 6.251655 ACCTACTTTACGTCATATCCGATC 57.748 41.667 0.00 0.00 0.00 3.69
5123 8472 5.277490 CGAACCTACTTTACGTCATATCCGA 60.277 44.000 0.00 0.00 0.00 4.55
5124 8473 4.908156 CGAACCTACTTTACGTCATATCCG 59.092 45.833 0.00 0.00 0.00 4.18
5125 8474 5.009010 TCCGAACCTACTTTACGTCATATCC 59.991 44.000 0.00 0.00 0.00 2.59
5126 8475 6.064846 TCCGAACCTACTTTACGTCATATC 57.935 41.667 0.00 0.00 0.00 1.63
5128 8477 6.205464 CCTATCCGAACCTACTTTACGTCATA 59.795 42.308 0.00 0.00 0.00 2.15
5130 8479 4.336433 CCTATCCGAACCTACTTTACGTCA 59.664 45.833 0.00 0.00 0.00 4.35
5131 8480 4.261363 CCCTATCCGAACCTACTTTACGTC 60.261 50.000 0.00 0.00 0.00 4.34
5132 8481 3.633986 CCCTATCCGAACCTACTTTACGT 59.366 47.826 0.00 0.00 0.00 3.57
5133 8482 3.885297 TCCCTATCCGAACCTACTTTACG 59.115 47.826 0.00 0.00 0.00 3.18
5135 8484 4.343239 GCTTCCCTATCCGAACCTACTTTA 59.657 45.833 0.00 0.00 0.00 1.85
5137 8486 2.699321 GCTTCCCTATCCGAACCTACTT 59.301 50.000 0.00 0.00 0.00 2.24
5138 8487 2.317973 GCTTCCCTATCCGAACCTACT 58.682 52.381 0.00 0.00 0.00 2.57
5139 8488 1.000496 CGCTTCCCTATCCGAACCTAC 60.000 57.143 0.00 0.00 0.00 3.18
5141 8490 1.400530 CCGCTTCCCTATCCGAACCT 61.401 60.000 0.00 0.00 0.00 3.50
5142 8491 1.069258 CCGCTTCCCTATCCGAACC 59.931 63.158 0.00 0.00 0.00 3.62
5143 8492 1.069258 CCCGCTTCCCTATCCGAAC 59.931 63.158 0.00 0.00 0.00 3.95
5144 8493 0.471211 ATCCCGCTTCCCTATCCGAA 60.471 55.000 0.00 0.00 0.00 4.30
5145 8494 0.898789 GATCCCGCTTCCCTATCCGA 60.899 60.000 0.00 0.00 0.00 4.55
5146 8495 1.592223 GATCCCGCTTCCCTATCCG 59.408 63.158 0.00 0.00 0.00 4.18
5147 8496 0.545548 AGGATCCCGCTTCCCTATCC 60.546 60.000 8.55 0.00 37.05 2.59
5148 8497 0.899019 GAGGATCCCGCTTCCCTATC 59.101 60.000 8.55 0.00 33.45 2.08
5149 8498 0.489567 AGAGGATCCCGCTTCCCTAT 59.510 55.000 8.55 0.00 33.66 2.57
5150 8499 0.178958 GAGAGGATCCCGCTTCCCTA 60.179 60.000 8.55 0.00 32.83 3.53
5152 8501 2.512355 GGAGAGGATCCCGCTTCCC 61.512 68.421 8.55 1.29 43.01 3.97
5153 8502 3.143338 GGAGAGGATCCCGCTTCC 58.857 66.667 8.55 6.90 43.01 3.46
5165 8514 3.028921 GCACCTGCCTCCTGGAGAG 62.029 68.421 25.18 14.61 42.83 3.20
5167 8516 2.600729 AAGCACCTGCCTCCTGGAG 61.601 63.158 17.02 17.02 43.38 3.86
5168 8517 2.530151 AAGCACCTGCCTCCTGGA 60.530 61.111 0.00 0.00 43.38 3.86
5169 8518 2.360852 CAAGCACCTGCCTCCTGG 60.361 66.667 0.00 0.00 43.38 4.45
5170 8519 0.959372 CTTCAAGCACCTGCCTCCTG 60.959 60.000 0.00 0.00 43.38 3.86
5171 8520 1.130054 TCTTCAAGCACCTGCCTCCT 61.130 55.000 0.00 0.00 43.38 3.69
5173 8522 0.322975 TCTCTTCAAGCACCTGCCTC 59.677 55.000 0.00 0.00 43.38 4.70
5175 8524 1.609208 TTTCTCTTCAAGCACCTGCC 58.391 50.000 0.00 0.00 43.38 4.85
5176 8525 3.067320 ACTTTTTCTCTTCAAGCACCTGC 59.933 43.478 0.00 0.00 42.49 4.85
5177 8526 4.096984 ACACTTTTTCTCTTCAAGCACCTG 59.903 41.667 0.00 0.00 0.00 4.00
5179 8528 4.354587 CACACTTTTTCTCTTCAAGCACC 58.645 43.478 0.00 0.00 0.00 5.01
5182 8531 4.498177 GGACCACACTTTTTCTCTTCAAGC 60.498 45.833 0.00 0.00 0.00 4.01
5183 8532 4.260784 CGGACCACACTTTTTCTCTTCAAG 60.261 45.833 0.00 0.00 0.00 3.02
5184 8533 3.625764 CGGACCACACTTTTTCTCTTCAA 59.374 43.478 0.00 0.00 0.00 2.69
5185 8534 3.202906 CGGACCACACTTTTTCTCTTCA 58.797 45.455 0.00 0.00 0.00 3.02
5186 8535 2.548480 CCGGACCACACTTTTTCTCTTC 59.452 50.000 0.00 0.00 0.00 2.87
5191 8540 1.332686 GTCACCGGACCACACTTTTTC 59.667 52.381 9.46 0.00 38.12 2.29
5192 8541 1.340211 TGTCACCGGACCACACTTTTT 60.340 47.619 9.46 0.00 43.65 1.94
5193 8542 0.253610 TGTCACCGGACCACACTTTT 59.746 50.000 9.46 0.00 43.65 2.27
5194 8543 0.253610 TTGTCACCGGACCACACTTT 59.746 50.000 9.46 0.00 43.65 2.66
5195 8544 0.253610 TTTGTCACCGGACCACACTT 59.746 50.000 9.46 0.00 43.65 3.16
5196 8545 0.253610 TTTTGTCACCGGACCACACT 59.746 50.000 9.46 0.00 43.65 3.55
5198 8547 0.464735 CCTTTTGTCACCGGACCACA 60.465 55.000 9.46 4.37 43.65 4.17
5199 8548 0.464916 ACCTTTTGTCACCGGACCAC 60.465 55.000 9.46 1.18 43.65 4.16
5200 8549 0.464735 CACCTTTTGTCACCGGACCA 60.465 55.000 9.46 0.00 43.65 4.02
5201 8550 0.179040 TCACCTTTTGTCACCGGACC 60.179 55.000 9.46 0.00 43.65 4.46
5202 8551 1.670791 TTCACCTTTTGTCACCGGAC 58.329 50.000 9.46 0.00 44.57 4.79
5203 8552 2.421751 TTTCACCTTTTGTCACCGGA 57.578 45.000 9.46 0.00 0.00 5.14
5204 8553 3.181480 ACATTTTCACCTTTTGTCACCGG 60.181 43.478 0.00 0.00 0.00 5.28
5205 8554 4.040445 ACATTTTCACCTTTTGTCACCG 57.960 40.909 0.00 0.00 0.00 4.94
5206 8555 4.570369 CCAACATTTTCACCTTTTGTCACC 59.430 41.667 0.00 0.00 0.00 4.02
5207 8556 5.415221 TCCAACATTTTCACCTTTTGTCAC 58.585 37.500 0.00 0.00 0.00 3.67
5208 8557 5.186797 ACTCCAACATTTTCACCTTTTGTCA 59.813 36.000 0.00 0.00 0.00 3.58
5210 8559 5.186797 TCACTCCAACATTTTCACCTTTTGT 59.813 36.000 0.00 0.00 0.00 2.83
5212 8561 5.930837 TCACTCCAACATTTTCACCTTTT 57.069 34.783 0.00 0.00 0.00 2.27
5213 8562 5.930837 TTCACTCCAACATTTTCACCTTT 57.069 34.783 0.00 0.00 0.00 3.11
5214 8563 5.930837 TTTCACTCCAACATTTTCACCTT 57.069 34.783 0.00 0.00 0.00 3.50
5215 8564 5.930837 TTTTCACTCCAACATTTTCACCT 57.069 34.783 0.00 0.00 0.00 4.00
5216 8565 8.141268 TCTATTTTTCACTCCAACATTTTCACC 58.859 33.333 0.00 0.00 0.00 4.02
5217 8566 9.185192 CTCTATTTTTCACTCCAACATTTTCAC 57.815 33.333 0.00 0.00 0.00 3.18
5218 8567 9.130661 TCTCTATTTTTCACTCCAACATTTTCA 57.869 29.630 0.00 0.00 0.00 2.69
5220 8569 9.918630 CATCTCTATTTTTCACTCCAACATTTT 57.081 29.630 0.00 0.00 0.00 1.82
5221 8570 8.031277 GCATCTCTATTTTTCACTCCAACATTT 58.969 33.333 0.00 0.00 0.00 2.32
5226 8575 6.660521 ACATGCATCTCTATTTTTCACTCCAA 59.339 34.615 0.00 0.00 0.00 3.53
5227 8576 6.094464 CACATGCATCTCTATTTTTCACTCCA 59.906 38.462 0.00 0.00 0.00 3.86
5228 8577 6.094603 ACACATGCATCTCTATTTTTCACTCC 59.905 38.462 0.00 0.00 0.00 3.85
5231 8580 7.978982 AGTACACATGCATCTCTATTTTTCAC 58.021 34.615 0.00 0.00 0.00 3.18
5232 8581 9.317936 CTAGTACACATGCATCTCTATTTTTCA 57.682 33.333 0.00 0.00 0.00 2.69
5235 8584 8.700051 ACTCTAGTACACATGCATCTCTATTTT 58.300 33.333 0.00 0.00 0.00 1.82
5237 8586 7.723616 AGACTCTAGTACACATGCATCTCTATT 59.276 37.037 0.00 0.00 0.00 1.73
5238 8587 7.230747 AGACTCTAGTACACATGCATCTCTAT 58.769 38.462 0.00 0.00 0.00 1.98
5239 8588 6.596621 AGACTCTAGTACACATGCATCTCTA 58.403 40.000 0.00 0.00 0.00 2.43
5240 8589 5.445069 AGACTCTAGTACACATGCATCTCT 58.555 41.667 0.00 0.00 0.00 3.10
5241 8590 5.766150 AGACTCTAGTACACATGCATCTC 57.234 43.478 0.00 0.00 0.00 2.75
5242 8591 6.537453 AAAGACTCTAGTACACATGCATCT 57.463 37.500 0.00 0.00 0.00 2.90
5243 8592 8.879342 AATAAAGACTCTAGTACACATGCATC 57.121 34.615 0.00 0.00 0.00 3.91
5245 8594 9.151471 GAAAATAAAGACTCTAGTACACATGCA 57.849 33.333 0.00 0.00 0.00 3.96
5246 8595 9.372369 AGAAAATAAAGACTCTAGTACACATGC 57.628 33.333 0.00 0.00 0.00 4.06
5266 8615 9.259832 AGTGGGCTTCATTAAGAAATAGAAAAT 57.740 29.630 0.00 0.00 35.40 1.82
5267 8616 8.650143 AGTGGGCTTCATTAAGAAATAGAAAA 57.350 30.769 0.00 0.00 35.40 2.29
5268 8617 9.396022 CTAGTGGGCTTCATTAAGAAATAGAAA 57.604 33.333 0.00 0.00 35.40 2.52
5270 8619 7.987458 CACTAGTGGGCTTCATTAAGAAATAGA 59.013 37.037 15.49 0.00 35.40 1.98
5271 8620 7.227512 CCACTAGTGGGCTTCATTAAGAAATAG 59.772 40.741 31.15 1.30 46.81 1.73
5272 8621 7.054124 CCACTAGTGGGCTTCATTAAGAAATA 58.946 38.462 31.15 0.00 46.81 1.40
5273 8622 5.888161 CCACTAGTGGGCTTCATTAAGAAAT 59.112 40.000 31.15 0.00 46.81 2.17
5274 8623 5.253330 CCACTAGTGGGCTTCATTAAGAAA 58.747 41.667 31.15 0.00 46.81 2.52
5275 8624 4.843728 CCACTAGTGGGCTTCATTAAGAA 58.156 43.478 31.15 0.00 46.81 2.52
5276 8625 4.487714 CCACTAGTGGGCTTCATTAAGA 57.512 45.455 31.15 0.00 46.81 2.10
5289 8638 2.679837 CCAATGCAAGCTACCACTAGTG 59.320 50.000 16.34 16.34 0.00 2.74
5290 8639 2.356125 CCCAATGCAAGCTACCACTAGT 60.356 50.000 0.00 0.00 0.00 2.57
5291 8640 2.292267 CCCAATGCAAGCTACCACTAG 58.708 52.381 0.00 0.00 0.00 2.57
5292 8641 1.064758 CCCCAATGCAAGCTACCACTA 60.065 52.381 0.00 0.00 0.00 2.74
5293 8642 0.323725 CCCCAATGCAAGCTACCACT 60.324 55.000 0.00 0.00 0.00 4.00
5294 8643 0.323360 TCCCCAATGCAAGCTACCAC 60.323 55.000 0.00 0.00 0.00 4.16
5295 8644 0.034186 CTCCCCAATGCAAGCTACCA 60.034 55.000 0.00 0.00 0.00 3.25
5296 8645 0.255890 TCTCCCCAATGCAAGCTACC 59.744 55.000 0.00 0.00 0.00 3.18
5297 8646 2.128771 TTCTCCCCAATGCAAGCTAC 57.871 50.000 0.00 0.00 0.00 3.58
5298 8647 2.897271 TTTCTCCCCAATGCAAGCTA 57.103 45.000 0.00 0.00 0.00 3.32
5300 8649 2.837532 TTTTTCTCCCCAATGCAAGC 57.162 45.000 0.00 0.00 0.00 4.01
5322 8671 9.830975 AAAAAGTAATTTGAGGCACTTACATTT 57.169 25.926 0.00 0.00 41.55 2.32
5323 8672 9.260002 CAAAAAGTAATTTGAGGCACTTACATT 57.740 29.630 0.00 0.00 41.55 2.71
5324 8673 8.421002 ACAAAAAGTAATTTGAGGCACTTACAT 58.579 29.630 6.76 0.00 41.55 2.29
5325 8674 7.777095 ACAAAAAGTAATTTGAGGCACTTACA 58.223 30.769 6.76 0.00 41.55 2.41
5326 8675 7.918562 TGACAAAAAGTAATTTGAGGCACTTAC 59.081 33.333 6.76 0.00 41.55 2.34
5330 8679 6.922957 TCATGACAAAAAGTAATTTGAGGCAC 59.077 34.615 6.76 0.00 41.73 5.01
5332 8681 7.327032 GTCTCATGACAAAAAGTAATTTGAGGC 59.673 37.037 6.76 0.00 41.73 4.70
5359 8708 5.253798 ACAATGGTGGCATAGGGATACATAT 59.746 40.000 0.00 0.00 46.26 1.78
5360 8709 4.601420 ACAATGGTGGCATAGGGATACATA 59.399 41.667 0.00 0.00 37.19 2.29
5361 8710 3.398967 ACAATGGTGGCATAGGGATACAT 59.601 43.478 0.00 0.00 39.74 2.29
5364 8713 3.977326 TGTACAATGGTGGCATAGGGATA 59.023 43.478 0.00 0.00 0.00 2.59
5365 8714 2.782925 TGTACAATGGTGGCATAGGGAT 59.217 45.455 0.00 0.00 0.00 3.85
5366 8715 2.200955 TGTACAATGGTGGCATAGGGA 58.799 47.619 0.00 0.00 0.00 4.20
5367 8716 2.727123 TGTACAATGGTGGCATAGGG 57.273 50.000 0.00 0.00 0.00 3.53
5370 8719 2.305928 GGCATGTACAATGGTGGCATA 58.694 47.619 14.01 0.00 37.14 3.14
5372 8721 0.969917 GGGCATGTACAATGGTGGCA 60.970 55.000 18.87 0.00 38.72 4.92
5373 8722 0.684153 AGGGCATGTACAATGGTGGC 60.684 55.000 11.25 11.25 36.52 5.01
5376 8725 3.685550 GCTCTAAGGGCATGTACAATGGT 60.686 47.826 0.00 0.00 0.00 3.55
5377 8726 2.880890 GCTCTAAGGGCATGTACAATGG 59.119 50.000 0.00 0.00 0.00 3.16
5380 8729 2.170607 GGAGCTCTAAGGGCATGTACAA 59.829 50.000 14.64 0.00 0.00 2.41
5381 8730 1.762957 GGAGCTCTAAGGGCATGTACA 59.237 52.381 14.64 0.00 0.00 2.90
5382 8731 1.070914 GGGAGCTCTAAGGGCATGTAC 59.929 57.143 14.64 0.00 0.00 2.90
5383 8732 1.424638 GGGAGCTCTAAGGGCATGTA 58.575 55.000 14.64 0.00 0.00 2.29
5386 8735 1.059006 CAGGGGAGCTCTAAGGGCAT 61.059 60.000 14.64 0.00 0.00 4.40
5387 8736 1.690633 CAGGGGAGCTCTAAGGGCA 60.691 63.158 14.64 0.00 0.00 5.36
5388 8737 3.113514 GCAGGGGAGCTCTAAGGGC 62.114 68.421 14.64 7.84 0.00 5.19
5389 8738 2.801631 CGCAGGGGAGCTCTAAGGG 61.802 68.421 14.64 6.21 0.00 3.95
5390 8739 2.818132 CGCAGGGGAGCTCTAAGG 59.182 66.667 14.64 2.73 0.00 2.69
5391 8740 2.107953 GCGCAGGGGAGCTCTAAG 59.892 66.667 14.64 2.75 36.83 2.18
5419 8896 2.263077 GACATTGTACACCAGCTCTCG 58.737 52.381 0.00 0.00 0.00 4.04
5427 8904 3.619233 ACGCTTTTGACATTGTACACC 57.381 42.857 0.00 0.00 0.00 4.16
5584 9066 1.834771 CGTCGAGATTATAGCGATGCG 59.165 52.381 0.00 0.00 36.37 4.73
5587 9069 3.766676 ATGCGTCGAGATTATAGCGAT 57.233 42.857 0.00 0.00 36.37 4.58
5619 9102 1.730501 ACATCACTGTCAATGCTCCG 58.269 50.000 0.79 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.