Multiple sequence alignment - TraesCS3B01G275400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G275400 chr3B 100.000 5225 0 0 1 5225 445201060 445206284 0.000000e+00 9649
1 TraesCS3B01G275400 chr3B 90.741 162 15 0 1273 1434 117556907 117556746 3.170000e-52 217
2 TraesCS3B01G275400 chr3D 91.118 3648 172 40 899 4437 346059801 346063405 0.000000e+00 4802
3 TraesCS3B01G275400 chr3D 89.709 447 17 10 468 885 346059374 346059820 1.280000e-150 544
4 TraesCS3B01G275400 chr3D 85.209 311 31 8 4919 5225 346065302 346065601 6.570000e-79 305
5 TraesCS3B01G275400 chr3D 97.484 159 4 0 1 159 346058977 346059135 6.670000e-69 272
6 TraesCS3B01G275400 chr3D 84.388 237 28 5 4624 4860 346064718 346064945 1.890000e-54 224
7 TraesCS3B01G275400 chr3D 90.123 162 16 0 1273 1434 71499680 71499519 1.470000e-50 211
8 TraesCS3B01G275400 chr3D 85.577 208 10 3 263 467 346059134 346059324 3.190000e-47 200
9 TraesCS3B01G275400 chr3A 92.560 2809 133 32 1744 4491 457664182 457661389 0.000000e+00 3960
10 TraesCS3B01G275400 chr3A 87.382 1268 54 38 468 1683 457665396 457664183 0.000000e+00 1358
11 TraesCS3B01G275400 chr3A 96.855 159 4 1 1 159 457665915 457665758 1.120000e-66 265
12 TraesCS3B01G275400 chr3A 88.942 208 20 2 263 467 457665759 457665552 2.410000e-63 254
13 TraesCS3B01G275400 chr3A 89.474 171 18 0 1273 1443 83728197 83728027 3.170000e-52 217
14 TraesCS3B01G275400 chr1A 86.555 357 38 9 1073 1424 539760006 539760357 8.210000e-103 385
15 TraesCS3B01G275400 chr1B 84.184 392 44 10 1036 1424 603298821 603299197 1.070000e-96 364
16 TraesCS3B01G275400 chr1B 97.297 111 3 0 154 264 476016133 476016023 6.910000e-44 189
17 TraesCS3B01G275400 chr1B 99.038 104 1 0 158 261 113565124 113565227 2.480000e-43 187
18 TraesCS3B01G275400 chr1D 85.630 341 37 8 1084 1424 443821447 443821775 1.080000e-91 348
19 TraesCS3B01G275400 chr1D 98.131 107 2 0 158 264 19774788 19774682 2.480000e-43 187
20 TraesCS3B01G275400 chr1D 94.872 117 6 0 145 261 47705720 47705836 3.210000e-42 183
21 TraesCS3B01G275400 chr2D 99.065 107 1 0 155 261 617397748 617397854 5.340000e-45 193
22 TraesCS3B01G275400 chr2D 96.396 111 4 0 151 261 579421468 579421578 3.210000e-42 183
23 TraesCS3B01G275400 chr7D 99.048 105 1 0 157 261 461166011 461166115 6.910000e-44 189
24 TraesCS3B01G275400 chr2B 97.273 110 3 0 155 264 501608132 501608023 2.480000e-43 187
25 TraesCS3B01G275400 chr7B 96.429 112 4 0 154 265 297402182 297402293 8.940000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G275400 chr3B 445201060 445206284 5224 False 9649.000000 9649 100.000000 1 5225 1 chr3B.!!$F1 5224
1 TraesCS3B01G275400 chr3D 346058977 346065601 6624 False 1057.833333 4802 88.914167 1 5225 6 chr3D.!!$F1 5224
2 TraesCS3B01G275400 chr3A 457661389 457665915 4526 True 1459.250000 3960 91.434750 1 4491 4 chr3A.!!$R2 4490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
997 1203 0.179045 ATTTCCGCTCCAGAATCGGG 60.179 55.000 0.00 0.0 43.10 5.14 F
1055 1261 1.144057 GGTGGCGATCGAGAACCAT 59.856 57.895 21.57 0.0 34.04 3.55 F
1646 1889 1.495584 TTTTCAGTGCACTCCGCGTC 61.496 55.000 18.64 0.0 46.97 5.19 F
2907 3189 1.078214 CGCTTGGATTGCCTGGAGA 60.078 57.895 0.00 0.0 34.31 3.71 F
3229 3537 0.246635 GTGTCACGCCTCCACTACAT 59.753 55.000 0.00 0.0 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 2067 0.095935 CGGCAGAGCATTCAACGAAG 59.904 55.000 0.00 0.00 0.00 3.79 R
2880 3162 1.060698 GCAATCCAAGCGTAGTTCGTC 59.939 52.381 0.00 0.00 42.13 4.20 R
3198 3506 1.204941 GCGTGACACCTTAGGATGTCT 59.795 52.381 23.76 0.00 44.59 3.41 R
4057 4369 0.041090 ATTTCCCGAAGCCATGGGTT 59.959 50.000 28.72 28.72 46.13 4.11 R
5139 6954 0.036952 CAGCCGTGACAGTGGAATCT 60.037 55.000 0.00 0.00 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 5.454232 CCAAAATATAAAGCGTAGTTTGGCG 59.546 40.000 15.15 0.00 44.86 5.69
163 164 7.991084 AAAGTACCTTTTGTATTGTACTCCC 57.009 36.000 0.00 0.00 42.15 4.30
165 166 6.944096 AGTACCTTTTGTATTGTACTCCCTC 58.056 40.000 0.00 0.00 39.65 4.30
167 168 4.189231 CCTTTTGTATTGTACTCCCTCCG 58.811 47.826 0.00 0.00 0.00 4.63
169 170 4.895668 TTTGTATTGTACTCCCTCCGTT 57.104 40.909 0.00 0.00 0.00 4.44
170 171 4.460948 TTGTATTGTACTCCCTCCGTTC 57.539 45.455 0.00 0.00 0.00 3.95
171 172 2.424601 TGTATTGTACTCCCTCCGTTCG 59.575 50.000 0.00 0.00 0.00 3.95
172 173 0.822164 ATTGTACTCCCTCCGTTCGG 59.178 55.000 4.74 4.74 0.00 4.30
173 174 0.251297 TTGTACTCCCTCCGTTCGGA 60.251 55.000 13.34 13.34 0.00 4.55
174 175 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
175 176 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
176 177 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
177 178 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
178 179 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
179 180 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
180 181 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
181 182 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
182 183 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
183 184 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
184 185 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
185 186 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
186 187 3.061322 CCGTTCGGAATTACTTGTCACA 58.939 45.455 5.19 0.00 0.00 3.58
187 188 3.495377 CCGTTCGGAATTACTTGTCACAA 59.505 43.478 5.19 0.00 0.00 3.33
188 189 4.024725 CCGTTCGGAATTACTTGTCACAAA 60.025 41.667 5.19 0.00 0.00 2.83
189 190 5.503498 CGTTCGGAATTACTTGTCACAAAA 58.497 37.500 0.00 0.00 0.00 2.44
190 191 5.966503 CGTTCGGAATTACTTGTCACAAAAA 59.033 36.000 0.00 0.00 0.00 1.94
191 192 6.635239 CGTTCGGAATTACTTGTCACAAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
192 193 7.357206 CGTTCGGAATTACTTGTCACAAAAATG 60.357 37.037 0.00 0.00 0.00 2.32
193 194 7.265647 TCGGAATTACTTGTCACAAAAATGA 57.734 32.000 0.00 0.00 0.00 2.57
194 195 7.708051 TCGGAATTACTTGTCACAAAAATGAA 58.292 30.769 0.00 0.00 0.00 2.57
195 196 8.356657 TCGGAATTACTTGTCACAAAAATGAAT 58.643 29.630 0.00 0.00 0.00 2.57
196 197 8.427012 CGGAATTACTTGTCACAAAAATGAATG 58.573 33.333 0.00 0.00 0.00 2.67
197 198 9.260002 GGAATTACTTGTCACAAAAATGAATGT 57.740 29.630 0.00 0.00 0.00 2.71
206 207 9.891828 TGTCACAAAAATGAATGTATCTACAAC 57.108 29.630 0.00 0.00 39.99 3.32
239 240 9.553064 ACATCTAGATACATTCATTTCTTGGAC 57.447 33.333 4.54 0.00 0.00 4.02
240 241 8.706936 CATCTAGATACATTCATTTCTTGGACG 58.293 37.037 4.54 0.00 0.00 4.79
241 242 8.007405 TCTAGATACATTCATTTCTTGGACGA 57.993 34.615 0.00 0.00 0.00 4.20
242 243 8.138074 TCTAGATACATTCATTTCTTGGACGAG 58.862 37.037 0.00 0.00 0.00 4.18
243 244 6.644347 AGATACATTCATTTCTTGGACGAGT 58.356 36.000 0.00 0.00 0.00 4.18
244 245 7.782049 AGATACATTCATTTCTTGGACGAGTA 58.218 34.615 0.00 0.00 0.00 2.59
245 246 8.258007 AGATACATTCATTTCTTGGACGAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
246 247 8.964476 ATACATTCATTTCTTGGACGAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
247 248 7.687941 ACATTCATTTCTTGGACGAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
248 249 8.110860 ACATTCATTTCTTGGACGAGTAATTT 57.889 30.769 0.00 0.00 0.00 1.82
249 250 8.237267 ACATTCATTTCTTGGACGAGTAATTTC 58.763 33.333 0.00 0.00 0.00 2.17
250 251 6.403333 TCATTTCTTGGACGAGTAATTTCG 57.597 37.500 0.00 0.00 45.70 3.46
251 252 6.160684 TCATTTCTTGGACGAGTAATTTCGA 58.839 36.000 6.54 0.00 43.03 3.71
252 253 6.647481 TCATTTCTTGGACGAGTAATTTCGAA 59.353 34.615 6.54 0.00 43.03 3.71
253 254 5.834239 TTCTTGGACGAGTAATTTCGAAC 57.166 39.130 6.54 0.00 43.03 3.95
254 255 3.916172 TCTTGGACGAGTAATTTCGAACG 59.084 43.478 6.54 0.00 43.03 3.95
255 256 2.598589 TGGACGAGTAATTTCGAACGG 58.401 47.619 6.54 0.00 43.03 4.44
256 257 2.228582 TGGACGAGTAATTTCGAACGGA 59.771 45.455 6.54 0.00 43.03 4.69
257 258 2.850647 GGACGAGTAATTTCGAACGGAG 59.149 50.000 6.54 0.00 43.03 4.63
258 259 2.850647 GACGAGTAATTTCGAACGGAGG 59.149 50.000 6.54 0.00 43.03 4.30
259 260 2.190981 CGAGTAATTTCGAACGGAGGG 58.809 52.381 0.00 0.00 43.03 4.30
260 261 2.159338 CGAGTAATTTCGAACGGAGGGA 60.159 50.000 0.00 0.00 43.03 4.20
261 262 3.674138 CGAGTAATTTCGAACGGAGGGAA 60.674 47.826 0.00 0.00 43.03 3.97
262 263 4.439968 GAGTAATTTCGAACGGAGGGAAT 58.560 43.478 0.00 0.00 0.00 3.01
263 264 5.594926 GAGTAATTTCGAACGGAGGGAATA 58.405 41.667 0.00 0.00 0.00 1.75
264 265 5.981174 AGTAATTTCGAACGGAGGGAATAA 58.019 37.500 0.00 0.00 0.00 1.40
265 266 5.814188 AGTAATTTCGAACGGAGGGAATAAC 59.186 40.000 0.00 0.00 0.00 1.89
266 267 2.678471 TTCGAACGGAGGGAATAACC 57.322 50.000 0.00 0.00 38.08 2.85
330 331 6.515272 AGGGTCAAACTGTGCTTTATATTG 57.485 37.500 0.00 0.00 0.00 1.90
370 388 9.696917 GAGAGTATGATTTTGTCCATTTTGTTT 57.303 29.630 0.00 0.00 0.00 2.83
371 389 9.480053 AGAGTATGATTTTGTCCATTTTGTTTG 57.520 29.630 0.00 0.00 0.00 2.93
372 390 9.474920 GAGTATGATTTTGTCCATTTTGTTTGA 57.525 29.630 0.00 0.00 0.00 2.69
373 391 9.260002 AGTATGATTTTGTCCATTTTGTTTGAC 57.740 29.630 0.00 0.00 0.00 3.18
374 392 6.917217 TGATTTTGTCCATTTTGTTTGACC 57.083 33.333 0.00 0.00 0.00 4.02
375 393 6.648192 TGATTTTGTCCATTTTGTTTGACCT 58.352 32.000 0.00 0.00 0.00 3.85
376 394 6.760770 TGATTTTGTCCATTTTGTTTGACCTC 59.239 34.615 0.00 0.00 0.00 3.85
377 395 5.667539 TTTGTCCATTTTGTTTGACCTCA 57.332 34.783 0.00 0.00 0.00 3.86
378 396 4.647424 TGTCCATTTTGTTTGACCTCAC 57.353 40.909 0.00 0.00 0.00 3.51
379 397 4.019858 TGTCCATTTTGTTTGACCTCACA 58.980 39.130 0.00 0.00 0.00 3.58
380 398 4.464244 TGTCCATTTTGTTTGACCTCACAA 59.536 37.500 0.00 0.00 0.00 3.33
381 399 5.047021 TGTCCATTTTGTTTGACCTCACAAA 60.047 36.000 0.00 0.00 40.36 2.83
385 403 5.476091 TTTTGTTTGACCTCACAAAACCT 57.524 34.783 6.19 0.00 44.25 3.50
386 404 5.476091 TTTGTTTGACCTCACAAAACCTT 57.524 34.783 0.00 0.00 39.40 3.50
417 435 3.515901 AGCAAGAATAAGGTTCTCTCCGT 59.484 43.478 0.00 0.00 0.00 4.69
429 447 0.688087 CTCTCCGTCTAGCCCCCTTT 60.688 60.000 0.00 0.00 0.00 3.11
482 656 2.095212 TGTGGAATGACGACTTCTCGAG 60.095 50.000 5.93 5.93 43.06 4.04
531 705 1.561769 AATGAGGGGTGATGACGGCA 61.562 55.000 0.00 0.00 0.00 5.69
657 855 8.560355 TTTCCAGAAAAAGAAAAGAAAAAGGG 57.440 30.769 0.00 0.00 0.00 3.95
729 928 1.863155 GCAGAAACCATGGAGGGGGA 61.863 60.000 21.47 0.00 43.89 4.81
794 993 1.668751 CCCGAACCACATAAACCATCG 59.331 52.381 0.00 0.00 0.00 3.84
882 1086 2.559698 TCCAATCTCGCTTCACCAAA 57.440 45.000 0.00 0.00 0.00 3.28
883 1087 2.857483 TCCAATCTCGCTTCACCAAAA 58.143 42.857 0.00 0.00 0.00 2.44
884 1088 2.552315 TCCAATCTCGCTTCACCAAAAC 59.448 45.455 0.00 0.00 0.00 2.43
885 1089 2.554032 CCAATCTCGCTTCACCAAAACT 59.446 45.455 0.00 0.00 0.00 2.66
886 1090 3.004734 CCAATCTCGCTTCACCAAAACTT 59.995 43.478 0.00 0.00 0.00 2.66
887 1091 4.222114 CAATCTCGCTTCACCAAAACTTC 58.778 43.478 0.00 0.00 0.00 3.01
888 1092 2.912771 TCTCGCTTCACCAAAACTTCA 58.087 42.857 0.00 0.00 0.00 3.02
889 1093 3.275143 TCTCGCTTCACCAAAACTTCAA 58.725 40.909 0.00 0.00 0.00 2.69
890 1094 3.692101 TCTCGCTTCACCAAAACTTCAAA 59.308 39.130 0.00 0.00 0.00 2.69
891 1095 4.156922 TCTCGCTTCACCAAAACTTCAAAA 59.843 37.500 0.00 0.00 0.00 2.44
892 1096 4.810790 TCGCTTCACCAAAACTTCAAAAA 58.189 34.783 0.00 0.00 0.00 1.94
934 1139 6.040504 ACCAAGAACAAGAAGAATACCCAAAC 59.959 38.462 0.00 0.00 0.00 2.93
957 1163 7.269477 ACCAGAAAAGAAACAGAAAGATCAG 57.731 36.000 0.00 0.00 0.00 2.90
989 1195 1.681780 GGATTGTCCATTTCCGCTCCA 60.682 52.381 0.00 0.00 36.28 3.86
990 1196 1.672881 GATTGTCCATTTCCGCTCCAG 59.327 52.381 0.00 0.00 0.00 3.86
991 1197 0.690192 TTGTCCATTTCCGCTCCAGA 59.310 50.000 0.00 0.00 0.00 3.86
992 1198 0.690192 TGTCCATTTCCGCTCCAGAA 59.310 50.000 0.00 0.00 0.00 3.02
993 1199 1.281867 TGTCCATTTCCGCTCCAGAAT 59.718 47.619 0.00 0.00 0.00 2.40
994 1200 1.943340 GTCCATTTCCGCTCCAGAATC 59.057 52.381 0.00 0.00 0.00 2.52
995 1201 0.940126 CCATTTCCGCTCCAGAATCG 59.060 55.000 0.00 0.00 0.00 3.34
996 1202 0.940126 CATTTCCGCTCCAGAATCGG 59.060 55.000 0.00 0.00 44.16 4.18
997 1203 0.179045 ATTTCCGCTCCAGAATCGGG 60.179 55.000 0.00 0.00 43.10 5.14
998 1204 2.869503 TTTCCGCTCCAGAATCGGGC 62.870 60.000 0.00 0.00 43.10 6.13
1002 1208 4.207281 CTCCAGAATCGGGCGCGA 62.207 66.667 28.58 28.58 0.00 5.87
1003 1209 3.716539 CTCCAGAATCGGGCGCGAA 62.717 63.158 30.01 13.53 0.00 4.70
1004 1210 2.817834 CCAGAATCGGGCGCGAAA 60.818 61.111 30.01 8.68 0.00 3.46
1020 1226 3.736252 CGCGAAAAGAAGAGAACAGAAGA 59.264 43.478 0.00 0.00 0.00 2.87
1055 1261 1.144057 GGTGGCGATCGAGAACCAT 59.856 57.895 21.57 0.00 34.04 3.55
1063 1269 1.689273 GATCGAGAACCATAGCCAGGT 59.311 52.381 0.00 0.00 42.34 4.00
1127 1333 4.767255 CTCCTGCACGACCTGGCC 62.767 72.222 0.00 0.00 0.00 5.36
1521 1755 1.928868 AAGGCCATTTCAGAACTGGG 58.071 50.000 18.70 5.77 0.00 4.45
1614 1857 2.874849 CCACTTTGTTTCTTTGCACGT 58.125 42.857 0.00 0.00 0.00 4.49
1631 1874 8.667987 TTTGCACGTATGATTCAGTTATTTTC 57.332 30.769 0.00 0.00 0.00 2.29
1641 1884 5.689383 TTCAGTTATTTTCAGTGCACTCC 57.311 39.130 18.64 0.00 0.00 3.85
1642 1885 3.745975 TCAGTTATTTTCAGTGCACTCCG 59.254 43.478 18.64 7.18 0.00 4.63
1643 1886 2.484264 AGTTATTTTCAGTGCACTCCGC 59.516 45.455 18.64 1.70 42.89 5.54
1646 1889 1.495584 TTTTCAGTGCACTCCGCGTC 61.496 55.000 18.64 0.00 46.97 5.19
1759 2004 8.678199 AGGCTTAAATTACTGCTTTCTTGATAC 58.322 33.333 0.00 0.00 0.00 2.24
1809 2054 4.498009 GCATGCAGCCGACTAATTTATTGT 60.498 41.667 14.21 0.00 37.23 2.71
1822 2067 8.788325 ACTAATTTATTGTAGTGTGGTTCTCC 57.212 34.615 0.00 0.00 0.00 3.71
1834 2079 2.095718 GTGGTTCTCCTTCGTTGAATGC 60.096 50.000 0.00 0.00 34.23 3.56
2003 2253 5.589050 AGTCGAAAGCTACCTTTTGTTTCTT 59.411 36.000 0.00 0.00 41.22 2.52
2045 2295 5.992829 AGAAATGTGTGTTACGTGGACAATA 59.007 36.000 0.00 0.00 0.00 1.90
2108 2358 8.703604 TCTTCCTTAGATTATTTCTTGTCACG 57.296 34.615 0.00 0.00 35.79 4.35
2148 2398 5.805486 TGTGAAGTCAATAGCTTACGATGTC 59.195 40.000 0.00 0.00 0.00 3.06
2246 2496 6.401796 GGCATGAAAGCAATTGATTTGACTTC 60.402 38.462 25.20 11.66 37.53 3.01
2256 2506 6.889301 ATTGATTTGACTTCAGAAAGCAGA 57.111 33.333 0.00 0.00 35.81 4.26
2275 2525 1.876156 GACAGAAGACCAAGTTGGCAG 59.124 52.381 22.25 5.05 42.67 4.85
2286 2536 3.594134 CAAGTTGGCAGAACAAAACCAA 58.406 40.909 0.00 0.00 39.81 3.67
2412 2679 3.619729 CCGTAGCACGTTCTAGATTCTC 58.380 50.000 0.00 0.00 40.58 2.87
2471 2742 4.762251 GGGAGTATCTTGTGCTGTTTTCTT 59.238 41.667 0.00 0.00 33.73 2.52
2481 2752 2.405892 CTGTTTTCTTGGGCGAACAG 57.594 50.000 0.00 0.00 41.83 3.16
2518 2789 5.432645 TGGAATACGGTTCATTGCTATCAA 58.567 37.500 5.38 0.00 36.51 2.57
2621 2892 9.631639 GTAAACACAAACTAATGCAATTGTTTC 57.368 29.630 10.75 0.00 36.29 2.78
2763 3035 6.459923 ACAGACTGAAGTAAGGACAATCTTC 58.540 40.000 10.08 0.00 37.42 2.87
2775 3047 3.817647 GGACAATCTTCAGTTCTTGCACT 59.182 43.478 0.00 0.00 0.00 4.40
2776 3048 4.083590 GGACAATCTTCAGTTCTTGCACTC 60.084 45.833 0.00 0.00 0.00 3.51
2778 3050 4.883585 ACAATCTTCAGTTCTTGCACTCAA 59.116 37.500 0.00 0.00 0.00 3.02
2779 3051 5.357878 ACAATCTTCAGTTCTTGCACTCAAA 59.642 36.000 0.00 0.00 0.00 2.69
2780 3052 6.040166 ACAATCTTCAGTTCTTGCACTCAAAT 59.960 34.615 0.00 0.00 0.00 2.32
2781 3053 5.428496 TCTTCAGTTCTTGCACTCAAATG 57.572 39.130 0.00 0.00 0.00 2.32
2782 3054 5.125356 TCTTCAGTTCTTGCACTCAAATGA 58.875 37.500 0.00 0.00 0.00 2.57
2784 3056 6.263842 TCTTCAGTTCTTGCACTCAAATGATT 59.736 34.615 3.29 0.00 0.00 2.57
2796 3075 6.421801 GCACTCAAATGATTTGCTTACAACTT 59.578 34.615 12.86 0.00 40.43 2.66
2824 3103 3.593442 TGGAACTGAACCTGGTGAATT 57.407 42.857 0.00 0.00 0.00 2.17
2867 3149 3.365265 GCCAAGAACCTGTGCCCG 61.365 66.667 0.00 0.00 0.00 6.13
2876 3158 2.264480 CTGTGCCCGACCGATCAA 59.736 61.111 0.00 0.00 0.00 2.57
2879 3161 4.812476 TGCCCGACCGATCAAGCG 62.812 66.667 0.00 0.00 0.00 4.68
2907 3189 1.078214 CGCTTGGATTGCCTGGAGA 60.078 57.895 0.00 0.00 34.31 3.71
2978 3260 3.578688 GATTGGTTTCTGCCACAATGAC 58.421 45.455 0.00 0.00 38.42 3.06
3198 3506 5.013568 TCAGTTTTGTTCCTTACGACTCA 57.986 39.130 0.00 0.00 0.00 3.41
3227 3535 1.080025 GGTGTCACGCCTCCACTAC 60.080 63.158 0.00 0.00 0.00 2.73
3229 3537 0.246635 GTGTCACGCCTCCACTACAT 59.753 55.000 0.00 0.00 0.00 2.29
3230 3538 1.475280 GTGTCACGCCTCCACTACATA 59.525 52.381 0.00 0.00 0.00 2.29
3407 3715 7.338449 TCCTAAATATAGTTGGCAAGTTGGTTC 59.662 37.037 13.62 0.00 0.00 3.62
3467 3775 1.398390 GAGTATGCAAGCTTCAACCCG 59.602 52.381 0.00 0.00 0.00 5.28
3569 3877 8.396272 ACAGTAAATATCCAGGTATTGCATTC 57.604 34.615 0.00 0.00 0.00 2.67
3606 3914 2.639065 TGTGTTTTCGTTCAGCCTTCT 58.361 42.857 0.00 0.00 0.00 2.85
3607 3915 3.799366 TGTGTTTTCGTTCAGCCTTCTA 58.201 40.909 0.00 0.00 0.00 2.10
3608 3916 3.807622 TGTGTTTTCGTTCAGCCTTCTAG 59.192 43.478 0.00 0.00 0.00 2.43
3728 4040 6.036083 ACTCAATTATCTTGGTTCGATTGTCG 59.964 38.462 0.00 0.00 42.10 4.35
3831 4143 1.516603 GGAGAAGTACACGCTCGCC 60.517 63.158 0.00 0.00 0.00 5.54
3893 4205 2.616842 GTTCATATTCGGGTTCGCCAAT 59.383 45.455 0.00 0.00 39.65 3.16
3898 4210 0.461339 TTCGGGTTCGCCAATCTAGC 60.461 55.000 0.00 0.00 39.65 3.42
4056 4368 4.523173 CGGTCCTAACCTCATGAATAGCTA 59.477 45.833 0.00 0.00 44.04 3.32
4057 4369 5.010719 CGGTCCTAACCTCATGAATAGCTAA 59.989 44.000 0.00 0.00 44.04 3.09
4061 4373 5.998363 CCTAACCTCATGAATAGCTAAACCC 59.002 44.000 0.00 0.00 0.00 4.11
4070 4382 2.325583 TAGCTAAACCCATGGCTTCG 57.674 50.000 6.09 0.00 36.40 3.79
4075 4387 0.178947 AAACCCATGGCTTCGGGAAA 60.179 50.000 6.09 0.00 46.34 3.13
4118 4433 4.293834 ACAGAAGCTGTGCAGTGTTACTG 61.294 47.826 4.65 4.65 43.63 2.74
4120 4435 7.707880 ACAGAAGCTGTGCAGTGTTACTGAT 62.708 44.000 12.79 2.44 44.90 2.90
4148 4466 3.060479 TCCTGGCTGGGATATAACAGT 57.940 47.619 10.79 0.00 37.07 3.55
4159 4477 7.982354 GCTGGGATATAACAGTAAGGATATGAC 59.018 40.741 7.67 0.00 37.07 3.06
4169 4487 7.665690 ACAGTAAGGATATGACAGAAGCATAG 58.334 38.462 0.00 0.00 32.28 2.23
4176 4494 8.462811 AGGATATGACAGAAGCATAGTATTACG 58.537 37.037 0.00 0.00 32.28 3.18
4225 4543 2.148768 ACGTTCCCATTTCGAACCTTC 58.851 47.619 0.00 0.00 37.00 3.46
4260 4578 4.908601 TCAGGAAGGAAGCTGTTTATGA 57.091 40.909 0.00 0.00 0.00 2.15
4269 4587 3.439857 AGCTGTTTATGAGGGCTTTGA 57.560 42.857 0.00 0.00 0.00 2.69
4272 4590 5.509498 AGCTGTTTATGAGGGCTTTGATTA 58.491 37.500 0.00 0.00 0.00 1.75
4274 4592 6.036470 GCTGTTTATGAGGGCTTTGATTAAC 58.964 40.000 0.00 0.00 0.00 2.01
4315 4641 1.933853 ACGCAACGATGATAAAGCCTC 59.066 47.619 0.00 0.00 0.00 4.70
4317 4643 2.201732 GCAACGATGATAAAGCCTCGA 58.798 47.619 0.00 0.00 35.24 4.04
4339 4665 6.416455 TCGAAGTTGCATTTTGTATGTTGTTC 59.584 34.615 0.00 0.00 0.00 3.18
4356 4682 2.512515 CTCCTAAGCACCGCTGGC 60.513 66.667 0.00 0.00 39.62 4.85
4370 4696 1.566018 GCTGGCGGTGTTAGTGTGAC 61.566 60.000 0.00 0.00 0.00 3.67
4372 4698 0.249699 TGGCGGTGTTAGTGTGACTG 60.250 55.000 0.00 0.00 0.00 3.51
4378 4706 3.488310 CGGTGTTAGTGTGACTGTGTTAC 59.512 47.826 0.00 0.00 0.00 2.50
4381 4709 5.919141 GGTGTTAGTGTGACTGTGTTACTAG 59.081 44.000 0.00 0.00 0.00 2.57
4383 4711 6.976925 GTGTTAGTGTGACTGTGTTACTAGTT 59.023 38.462 0.00 0.00 0.00 2.24
4441 5914 8.918961 AGACATCTCGTAAAAGAAGTATTGAG 57.081 34.615 0.00 0.00 27.95 3.02
4442 5915 8.524487 AGACATCTCGTAAAAGAAGTATTGAGT 58.476 33.333 0.00 0.00 27.95 3.41
4443 5916 9.784680 GACATCTCGTAAAAGAAGTATTGAGTA 57.215 33.333 0.00 0.00 27.95 2.59
4455 5931 9.593134 AAGAAGTATTGAGTATGTGATCTTGAC 57.407 33.333 0.00 0.00 0.00 3.18
4468 5944 4.213482 GTGATCTTGACTAAACCGTGCTTT 59.787 41.667 0.00 0.00 0.00 3.51
4491 5967 1.817447 GTGTACTAGCTTGGAGACGGT 59.183 52.381 0.00 0.00 0.00 4.83
4494 5970 2.510928 ACTAGCTTGGAGACGGTACT 57.489 50.000 0.00 0.00 0.00 2.73
4496 5972 2.492484 ACTAGCTTGGAGACGGTACTTG 59.508 50.000 0.00 0.00 0.00 3.16
4497 5973 0.037232 AGCTTGGAGACGGTACTTGC 60.037 55.000 0.00 0.00 0.00 4.01
4498 5974 0.320421 GCTTGGAGACGGTACTTGCA 60.320 55.000 0.00 0.00 0.00 4.08
4499 5975 1.676014 GCTTGGAGACGGTACTTGCAT 60.676 52.381 0.00 0.00 0.00 3.96
4500 5976 2.699954 CTTGGAGACGGTACTTGCATT 58.300 47.619 0.00 0.00 0.00 3.56
4501 5977 2.093306 TGGAGACGGTACTTGCATTG 57.907 50.000 0.00 0.00 0.00 2.82
4502 5978 1.346395 TGGAGACGGTACTTGCATTGT 59.654 47.619 0.00 0.00 0.00 2.71
4503 5979 2.224426 TGGAGACGGTACTTGCATTGTT 60.224 45.455 0.00 0.00 0.00 2.83
4504 5980 2.159627 GGAGACGGTACTTGCATTGTTG 59.840 50.000 0.00 0.00 0.00 3.33
4505 5981 3.064207 GAGACGGTACTTGCATTGTTGA 58.936 45.455 0.00 0.00 0.00 3.18
4506 5982 3.472652 AGACGGTACTTGCATTGTTGAA 58.527 40.909 0.00 0.00 0.00 2.69
4507 5983 3.250040 AGACGGTACTTGCATTGTTGAAC 59.750 43.478 0.00 0.00 0.00 3.18
4508 5984 3.211045 ACGGTACTTGCATTGTTGAACT 58.789 40.909 0.00 0.00 0.00 3.01
4509 5985 4.382291 ACGGTACTTGCATTGTTGAACTA 58.618 39.130 0.00 0.00 0.00 2.24
4510 5986 5.001232 ACGGTACTTGCATTGTTGAACTAT 58.999 37.500 0.00 0.00 0.00 2.12
4511 5987 6.167685 ACGGTACTTGCATTGTTGAACTATA 58.832 36.000 0.00 0.00 0.00 1.31
4512 5988 6.091713 ACGGTACTTGCATTGTTGAACTATAC 59.908 38.462 0.00 0.00 0.00 1.47
4513 5989 6.475207 GGTACTTGCATTGTTGAACTATACG 58.525 40.000 0.00 0.00 0.00 3.06
4514 5990 4.969816 ACTTGCATTGTTGAACTATACGC 58.030 39.130 0.00 0.00 0.00 4.42
4515 5991 4.454161 ACTTGCATTGTTGAACTATACGCA 59.546 37.500 0.00 0.00 0.00 5.24
4516 5992 5.123820 ACTTGCATTGTTGAACTATACGCAT 59.876 36.000 5.83 0.00 0.00 4.73
4517 5993 4.907579 TGCATTGTTGAACTATACGCATG 58.092 39.130 0.00 0.00 0.00 4.06
4518 5994 4.201901 TGCATTGTTGAACTATACGCATGG 60.202 41.667 0.00 0.00 0.00 3.66
4519 5995 4.282068 CATTGTTGAACTATACGCATGGC 58.718 43.478 0.00 0.00 0.00 4.40
4520 5996 3.260475 TGTTGAACTATACGCATGGCT 57.740 42.857 0.00 0.00 0.00 4.75
4521 5997 2.935849 TGTTGAACTATACGCATGGCTG 59.064 45.455 0.00 0.00 0.00 4.85
4522 5998 3.194861 GTTGAACTATACGCATGGCTGA 58.805 45.455 0.00 0.00 0.00 4.26
4523 5999 3.535280 TGAACTATACGCATGGCTGAA 57.465 42.857 0.00 0.00 0.00 3.02
4524 6000 3.194861 TGAACTATACGCATGGCTGAAC 58.805 45.455 0.00 0.00 0.00 3.18
4525 6001 3.118775 TGAACTATACGCATGGCTGAACT 60.119 43.478 0.00 0.00 0.00 3.01
4526 6002 2.826428 ACTATACGCATGGCTGAACTG 58.174 47.619 0.00 0.00 0.00 3.16
4527 6003 1.528586 CTATACGCATGGCTGAACTGC 59.471 52.381 0.00 0.00 0.00 4.40
4528 6004 0.107508 ATACGCATGGCTGAACTGCT 60.108 50.000 0.00 0.00 33.75 4.24
4529 6005 1.020861 TACGCATGGCTGAACTGCTG 61.021 55.000 0.00 0.00 33.75 4.41
4530 6006 2.036571 CGCATGGCTGAACTGCTGA 61.037 57.895 0.00 0.00 33.75 4.26
4531 6007 1.579964 CGCATGGCTGAACTGCTGAA 61.580 55.000 0.00 0.00 33.75 3.02
4532 6008 0.599558 GCATGGCTGAACTGCTGAAA 59.400 50.000 0.00 0.00 33.15 2.69
4533 6009 1.000060 GCATGGCTGAACTGCTGAAAA 60.000 47.619 0.00 0.00 33.15 2.29
4534 6010 2.546373 GCATGGCTGAACTGCTGAAAAA 60.546 45.455 0.00 0.00 33.15 1.94
4535 6011 2.869233 TGGCTGAACTGCTGAAAAAC 57.131 45.000 0.00 0.00 0.00 2.43
4536 6012 1.408702 TGGCTGAACTGCTGAAAAACC 59.591 47.619 0.00 0.00 0.00 3.27
4537 6013 1.683385 GGCTGAACTGCTGAAAAACCT 59.317 47.619 0.00 0.00 0.00 3.50
4538 6014 2.544486 GGCTGAACTGCTGAAAAACCTG 60.544 50.000 0.00 0.00 0.00 4.00
4539 6015 2.735823 CTGAACTGCTGAAAAACCTGC 58.264 47.619 0.00 0.00 0.00 4.85
4540 6016 2.098614 TGAACTGCTGAAAAACCTGCA 58.901 42.857 0.00 0.00 38.41 4.41
4550 6026 4.016444 TGAAAAACCTGCAGAGTCTTTGT 58.984 39.130 17.39 0.00 0.00 2.83
4558 6034 1.795286 GCAGAGTCTTTGTGGTTCTCG 59.205 52.381 0.00 0.00 0.00 4.04
4571 6047 3.734735 GTGGTTCTCGATAATAAGACGGC 59.265 47.826 0.00 0.00 0.00 5.68
4585 6061 3.247006 AGACGGCGTTATCACTGAAAT 57.753 42.857 16.19 0.00 0.00 2.17
4588 6064 2.159572 ACGGCGTTATCACTGAAATTGC 60.160 45.455 6.77 0.00 0.00 3.56
4590 6066 2.440501 GCGTTATCACTGAAATTGCCG 58.559 47.619 0.00 0.00 0.00 5.69
4601 6077 2.730129 AAATTGCCGGGCCCTGAACT 62.730 55.000 22.43 0.00 0.00 3.01
4620 6096 7.156876 TGAACTGAAGAAATCAACACTGTTT 57.843 32.000 0.00 0.00 37.67 2.83
4648 6151 6.218746 AGTTCAGTTAACTGTTACCTTACCG 58.781 40.000 29.83 5.33 46.90 4.02
4652 6155 5.467735 CAGTTAACTGTTACCTTACCGCTTT 59.532 40.000 24.70 0.00 39.09 3.51
4653 6156 6.017687 CAGTTAACTGTTACCTTACCGCTTTT 60.018 38.462 24.70 0.00 39.09 2.27
4654 6157 6.203530 AGTTAACTGTTACCTTACCGCTTTTC 59.796 38.462 7.48 0.00 0.00 2.29
4665 6168 1.464997 ACCGCTTTTCGCTGAAGATTC 59.535 47.619 0.00 0.00 36.73 2.52
4669 6172 3.358993 CGCTTTTCGCTGAAGATTCAAAC 59.641 43.478 0.00 0.00 36.64 2.93
4674 6177 3.067106 TCGCTGAAGATTCAAACTGGTC 58.933 45.455 0.00 0.00 36.64 4.02
4680 6183 5.384336 TGAAGATTCAAACTGGTCCATTCA 58.616 37.500 0.00 0.00 33.55 2.57
4681 6184 6.012113 TGAAGATTCAAACTGGTCCATTCAT 58.988 36.000 0.00 0.00 33.55 2.57
4694 6197 2.771372 TCCATTCATCCTCGATCCAACA 59.229 45.455 0.00 0.00 0.00 3.33
4703 6206 2.093500 CCTCGATCCAACAGATTCCACA 60.093 50.000 0.00 0.00 34.42 4.17
4705 6208 4.194640 CTCGATCCAACAGATTCCACATT 58.805 43.478 0.00 0.00 34.42 2.71
4713 6216 8.279970 TCCAACAGATTCCACATTTACTTATG 57.720 34.615 0.00 0.00 0.00 1.90
4715 6218 6.699575 ACAGATTCCACATTTACTTATGGC 57.300 37.500 0.00 0.00 31.87 4.40
4718 6221 2.294074 TCCACATTTACTTATGGCGCC 58.706 47.619 22.73 22.73 31.87 6.53
4723 6226 4.334203 CACATTTACTTATGGCGCCAAGTA 59.666 41.667 36.33 31.90 36.44 2.24
4729 6232 0.179084 TATGGCGCCAAGTAGAGCAC 60.179 55.000 36.33 0.00 0.00 4.40
4733 6236 2.447887 CGCCAAGTAGAGCACGCAG 61.448 63.158 0.00 0.00 0.00 5.18
4735 6238 0.951040 GCCAAGTAGAGCACGCAGTT 60.951 55.000 0.00 0.00 41.61 3.16
4736 6239 0.792640 CCAAGTAGAGCACGCAGTTG 59.207 55.000 0.00 0.00 41.61 3.16
4738 6241 0.951040 AAGTAGAGCACGCAGTTGCC 60.951 55.000 0.00 0.00 41.61 4.52
4739 6242 2.432456 TAGAGCACGCAGTTGCCG 60.432 61.111 0.00 0.00 41.61 5.69
4740 6243 3.932580 TAGAGCACGCAGTTGCCGG 62.933 63.158 0.00 0.00 41.61 6.13
4757 6260 1.726322 GGCGATCTTCGATCGGACG 60.726 63.158 22.79 7.95 43.74 4.79
4761 6264 2.750715 GATCTTCGATCGGACGGCCC 62.751 65.000 16.41 0.00 0.00 5.80
4762 6265 4.587189 CTTCGATCGGACGGCCCC 62.587 72.222 16.41 0.00 0.00 5.80
4781 6284 2.288025 GCTTCGTCCTGGGGTGGTA 61.288 63.158 0.00 0.00 0.00 3.25
4789 6292 1.064825 CCTGGGGTGGTAGTTCACTT 58.935 55.000 0.00 0.00 37.75 3.16
4790 6293 1.423921 CCTGGGGTGGTAGTTCACTTT 59.576 52.381 0.00 0.00 37.75 2.66
4791 6294 2.552373 CCTGGGGTGGTAGTTCACTTTC 60.552 54.545 0.00 0.00 37.75 2.62
4792 6295 2.372172 CTGGGGTGGTAGTTCACTTTCT 59.628 50.000 0.00 0.00 37.75 2.52
4793 6296 2.105821 TGGGGTGGTAGTTCACTTTCTG 59.894 50.000 0.00 0.00 37.75 3.02
4794 6297 2.370849 GGGGTGGTAGTTCACTTTCTGA 59.629 50.000 0.00 0.00 37.75 3.27
4848 6351 6.707440 TTTTGCATTTTCTCTCCAAGTGTA 57.293 33.333 0.00 0.00 0.00 2.90
4852 6355 5.183713 TGCATTTTCTCTCCAAGTGTAATGG 59.816 40.000 0.00 0.00 39.41 3.16
4860 6363 7.857456 TCTCTCCAAGTGTAATGGCTATAAAA 58.143 34.615 0.00 0.00 37.88 1.52
4861 6364 8.325787 TCTCTCCAAGTGTAATGGCTATAAAAA 58.674 33.333 0.00 0.00 37.88 1.94
4889 6700 5.215252 TCTTCAGTTTCAGGTGTAGGAAG 57.785 43.478 0.00 0.00 33.59 3.46
4890 6701 4.654262 TCTTCAGTTTCAGGTGTAGGAAGT 59.346 41.667 0.00 0.00 33.91 3.01
4894 6705 2.552743 GTTTCAGGTGTAGGAAGTTGGC 59.447 50.000 0.00 0.00 0.00 4.52
4895 6706 1.429930 TCAGGTGTAGGAAGTTGGCA 58.570 50.000 0.00 0.00 0.00 4.92
4896 6707 1.071699 TCAGGTGTAGGAAGTTGGCAC 59.928 52.381 0.00 0.00 0.00 5.01
4897 6708 0.034896 AGGTGTAGGAAGTTGGCACG 59.965 55.000 0.00 0.00 0.00 5.34
4898 6709 0.953960 GGTGTAGGAAGTTGGCACGG 60.954 60.000 0.00 0.00 0.00 4.94
4900 6711 2.038837 GTAGGAAGTTGGCACGGGC 61.039 63.158 0.00 0.00 40.13 6.13
4901 6712 2.521451 TAGGAAGTTGGCACGGGCA 61.521 57.895 13.89 3.61 43.71 5.36
4902 6713 1.847798 TAGGAAGTTGGCACGGGCAT 61.848 55.000 13.89 0.00 43.71 4.40
4903 6714 2.568090 GAAGTTGGCACGGGCATG 59.432 61.111 13.89 0.00 43.71 4.06
4904 6715 2.990967 AAGTTGGCACGGGCATGG 60.991 61.111 13.89 0.00 43.71 3.66
4905 6716 3.808218 AAGTTGGCACGGGCATGGT 62.808 57.895 13.89 0.00 43.71 3.55
4907 6718 3.301554 TTGGCACGGGCATGGTTG 61.302 61.111 13.89 0.00 43.71 3.77
4941 6752 1.827969 CAGTTTCAAAACCCCACCACA 59.172 47.619 2.08 0.00 39.71 4.17
4944 6755 1.770294 TTCAAAACCCCACCACACTC 58.230 50.000 0.00 0.00 0.00 3.51
4951 6762 0.546747 CCCCACCACACTCCCTTCTA 60.547 60.000 0.00 0.00 0.00 2.10
4952 6763 0.905357 CCCACCACACTCCCTTCTAG 59.095 60.000 0.00 0.00 0.00 2.43
4953 6764 1.645710 CCACCACACTCCCTTCTAGT 58.354 55.000 0.00 0.00 0.00 2.57
5027 6842 2.093658 GCTCCTTCAATCTCGGGTTGTA 60.094 50.000 0.00 0.00 0.00 2.41
5037 6852 4.078516 GGGTTGTAGCCTCGCCGT 62.079 66.667 0.00 0.00 31.81 5.68
5041 6856 0.734889 GTTGTAGCCTCGCCGTAGTA 59.265 55.000 0.00 0.00 0.00 1.82
5061 6876 7.062605 CGTAGTAAAATTCCTCGCTTGAACTAA 59.937 37.037 0.00 0.00 0.00 2.24
5091 6906 4.336889 TTCGTCAGAAAGATCACAAGGT 57.663 40.909 0.00 0.00 32.65 3.50
5105 6920 2.026262 CACAAGGTACCCTGCCTGTATT 60.026 50.000 10.60 0.00 36.30 1.89
5108 6923 3.416414 AGGTACCCTGCCTGTATTAGT 57.584 47.619 8.74 0.00 34.56 2.24
5111 6926 2.263895 ACCCTGCCTGTATTAGTCCA 57.736 50.000 0.00 0.00 0.00 4.02
5115 6930 2.705658 CCTGCCTGTATTAGTCCATCCA 59.294 50.000 0.00 0.00 0.00 3.41
5123 6938 7.885399 GCCTGTATTAGTCCATCCAGAATTTAT 59.115 37.037 0.00 0.00 0.00 1.40
5135 6950 9.252962 CCATCCAGAATTTATAATTGTTGAAGC 57.747 33.333 0.00 0.00 0.00 3.86
5138 6953 8.980596 TCCAGAATTTATAATTGTTGAAGCCAT 58.019 29.630 0.00 0.00 0.00 4.40
5150 6965 4.263462 TGTTGAAGCCATAGATTCCACTGT 60.263 41.667 0.00 0.00 37.61 3.55
5154 6969 2.159043 AGCCATAGATTCCACTGTCACG 60.159 50.000 0.00 0.00 0.00 4.35
5162 6977 1.184970 TCCACTGTCACGGCTGATCA 61.185 55.000 0.00 0.00 0.00 2.92
5168 6983 1.758862 TGTCACGGCTGATCATGAGAT 59.241 47.619 0.00 0.00 37.13 2.75
5175 6990 2.367894 GGCTGATCATGAGATGGAGTCA 59.632 50.000 0.09 0.00 33.72 3.41
5202 7017 9.330063 CTACAATTAGATATTGAGACCTTGCAA 57.670 33.333 0.00 0.00 33.51 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 160 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
160 161 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
162 163 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
163 164 3.367025 GTGACAAGTAATTCCGAACGGAG 59.633 47.826 15.34 5.60 46.06 4.63
165 166 3.061322 TGTGACAAGTAATTCCGAACGG 58.939 45.455 6.94 6.94 0.00 4.44
167 168 7.646130 TCATTTTTGTGACAAGTAATTCCGAAC 59.354 33.333 0.00 0.00 0.00 3.95
169 170 7.265647 TCATTTTTGTGACAAGTAATTCCGA 57.734 32.000 0.00 0.00 0.00 4.55
170 171 7.922505 TTCATTTTTGTGACAAGTAATTCCG 57.077 32.000 0.00 0.00 0.00 4.30
171 172 9.260002 ACATTCATTTTTGTGACAAGTAATTCC 57.740 29.630 0.00 0.00 0.00 3.01
180 181 9.891828 GTTGTAGATACATTCATTTTTGTGACA 57.108 29.630 0.00 0.00 35.89 3.58
213 214 9.553064 GTCCAAGAAATGAATGTATCTAGATGT 57.447 33.333 15.79 0.00 0.00 3.06
214 215 8.706936 CGTCCAAGAAATGAATGTATCTAGATG 58.293 37.037 15.79 0.00 0.00 2.90
215 216 8.642432 TCGTCCAAGAAATGAATGTATCTAGAT 58.358 33.333 10.73 10.73 0.00 1.98
216 217 8.007405 TCGTCCAAGAAATGAATGTATCTAGA 57.993 34.615 0.00 0.00 0.00 2.43
217 218 7.923344 ACTCGTCCAAGAAATGAATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
218 219 7.782049 ACTCGTCCAAGAAATGAATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
219 220 6.644347 ACTCGTCCAAGAAATGAATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
220 221 6.910536 ACTCGTCCAAGAAATGAATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
221 222 8.964476 ATTACTCGTCCAAGAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
222 223 8.786826 AATTACTCGTCCAAGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
223 224 7.687941 AATTACTCGTCCAAGAAATGAATGT 57.312 32.000 0.00 0.00 0.00 2.71
224 225 7.426456 CGAAATTACTCGTCCAAGAAATGAATG 59.574 37.037 0.00 0.00 34.08 2.67
225 226 7.333423 TCGAAATTACTCGTCCAAGAAATGAAT 59.667 33.333 0.00 0.00 39.84 2.57
226 227 6.647481 TCGAAATTACTCGTCCAAGAAATGAA 59.353 34.615 0.00 0.00 39.84 2.57
227 228 6.160684 TCGAAATTACTCGTCCAAGAAATGA 58.839 36.000 0.00 0.00 39.84 2.57
228 229 6.403333 TCGAAATTACTCGTCCAAGAAATG 57.597 37.500 0.00 0.00 39.84 2.32
229 230 6.400727 CGTTCGAAATTACTCGTCCAAGAAAT 60.401 38.462 0.00 0.00 39.84 2.17
230 231 5.107760 CGTTCGAAATTACTCGTCCAAGAAA 60.108 40.000 0.00 0.00 39.84 2.52
231 232 4.383649 CGTTCGAAATTACTCGTCCAAGAA 59.616 41.667 0.00 0.00 39.84 2.52
232 233 3.916172 CGTTCGAAATTACTCGTCCAAGA 59.084 43.478 0.00 0.00 39.84 3.02
233 234 3.060363 CCGTTCGAAATTACTCGTCCAAG 59.940 47.826 0.00 0.00 39.84 3.61
234 235 2.988493 CCGTTCGAAATTACTCGTCCAA 59.012 45.455 0.00 0.00 39.84 3.53
235 236 2.228582 TCCGTTCGAAATTACTCGTCCA 59.771 45.455 0.00 0.00 39.84 4.02
236 237 2.850647 CTCCGTTCGAAATTACTCGTCC 59.149 50.000 0.00 0.00 39.84 4.79
237 238 2.850647 CCTCCGTTCGAAATTACTCGTC 59.149 50.000 0.00 0.00 39.84 4.20
238 239 2.416431 CCCTCCGTTCGAAATTACTCGT 60.416 50.000 0.00 0.00 39.84 4.18
239 240 2.159338 TCCCTCCGTTCGAAATTACTCG 60.159 50.000 0.00 0.00 40.25 4.18
240 241 3.515330 TCCCTCCGTTCGAAATTACTC 57.485 47.619 0.00 0.00 0.00 2.59
241 242 3.967332 TTCCCTCCGTTCGAAATTACT 57.033 42.857 0.00 0.00 0.00 2.24
242 243 5.007039 GGTTATTCCCTCCGTTCGAAATTAC 59.993 44.000 0.00 0.00 0.00 1.89
243 244 5.118286 GGTTATTCCCTCCGTTCGAAATTA 58.882 41.667 0.00 0.00 0.00 1.40
244 245 3.943381 GGTTATTCCCTCCGTTCGAAATT 59.057 43.478 0.00 0.00 0.00 1.82
245 246 3.538591 GGTTATTCCCTCCGTTCGAAAT 58.461 45.455 0.00 0.00 0.00 2.17
246 247 2.674747 CGGTTATTCCCTCCGTTCGAAA 60.675 50.000 0.00 0.00 39.51 3.46
247 248 1.135024 CGGTTATTCCCTCCGTTCGAA 60.135 52.381 0.00 0.00 39.51 3.71
248 249 0.457035 CGGTTATTCCCTCCGTTCGA 59.543 55.000 0.00 0.00 39.51 3.71
249 250 2.967740 CGGTTATTCCCTCCGTTCG 58.032 57.895 0.00 0.00 39.51 3.95
254 255 7.674120 ACAATATAGTAACGGTTATTCCCTCC 58.326 38.462 3.59 0.00 0.00 4.30
257 258 9.933723 ACATACAATATAGTAACGGTTATTCCC 57.066 33.333 3.59 0.00 0.00 3.97
293 294 9.747898 ACAGTTTGACCCTATGAAATTGTAATA 57.252 29.630 0.00 0.00 30.46 0.98
304 305 7.807977 ATATAAAGCACAGTTTGACCCTATG 57.192 36.000 0.00 0.00 0.00 2.23
330 331 1.446272 CTCTCCTCCGCCGTTTCAC 60.446 63.158 0.00 0.00 0.00 3.18
370 388 1.850345 AGGGAAGGTTTTGTGAGGTCA 59.150 47.619 0.00 0.00 0.00 4.02
371 389 2.658807 AGGGAAGGTTTTGTGAGGTC 57.341 50.000 0.00 0.00 0.00 3.85
372 390 3.053826 AGTAGGGAAGGTTTTGTGAGGT 58.946 45.455 0.00 0.00 0.00 3.85
373 391 3.790089 AGTAGGGAAGGTTTTGTGAGG 57.210 47.619 0.00 0.00 0.00 3.86
374 392 4.695928 GCTTAGTAGGGAAGGTTTTGTGAG 59.304 45.833 0.00 0.00 0.00 3.51
375 393 4.103469 TGCTTAGTAGGGAAGGTTTTGTGA 59.897 41.667 0.00 0.00 0.00 3.58
376 394 4.394729 TGCTTAGTAGGGAAGGTTTTGTG 58.605 43.478 0.00 0.00 0.00 3.33
377 395 4.717279 TGCTTAGTAGGGAAGGTTTTGT 57.283 40.909 0.00 0.00 0.00 2.83
378 396 5.313712 TCTTGCTTAGTAGGGAAGGTTTTG 58.686 41.667 12.58 0.00 33.85 2.44
379 397 5.578157 TCTTGCTTAGTAGGGAAGGTTTT 57.422 39.130 12.58 0.00 33.85 2.43
380 398 5.578157 TTCTTGCTTAGTAGGGAAGGTTT 57.422 39.130 12.58 0.00 33.85 3.27
381 399 5.780958 ATTCTTGCTTAGTAGGGAAGGTT 57.219 39.130 12.58 0.00 33.85 3.50
382 400 6.126739 CCTTATTCTTGCTTAGTAGGGAAGGT 60.127 42.308 12.58 5.86 33.85 3.50
383 401 6.126739 ACCTTATTCTTGCTTAGTAGGGAAGG 60.127 42.308 12.58 0.45 33.85 3.46
384 402 6.890293 ACCTTATTCTTGCTTAGTAGGGAAG 58.110 40.000 7.15 7.15 34.25 3.46
385 403 6.886178 ACCTTATTCTTGCTTAGTAGGGAA 57.114 37.500 0.00 0.00 0.00 3.97
386 404 6.672657 AGAACCTTATTCTTGCTTAGTAGGGA 59.327 38.462 0.00 0.00 0.00 4.20
417 435 1.993391 CACCGGAAAGGGGGCTAGA 60.993 63.158 9.46 0.00 46.96 2.43
429 447 0.544357 ACTCTGGAATCACCACCGGA 60.544 55.000 9.46 0.00 44.64 5.14
446 464 3.231736 ACACGCCCTTCGACCACT 61.232 61.111 0.00 0.00 41.67 4.00
449 467 2.798148 ATTCCACACGCCCTTCGACC 62.798 60.000 0.00 0.00 41.67 4.79
482 656 2.033675 CCGGGTAAACCAACAAAGACAC 59.966 50.000 0.00 0.00 40.22 3.67
545 725 8.464404 AGCACTTAACGATGACTATAAACACTA 58.536 33.333 0.00 0.00 0.00 2.74
624 821 7.753580 TCTTTTCTTTTTCTGGAAAAACGTCTC 59.246 33.333 14.72 0.00 43.08 3.36
657 855 0.299597 ACGCGTTGAGTCGTTGTTTC 59.700 50.000 5.58 0.00 35.09 2.78
729 928 1.304962 GCCGGGGGTTTTCCAGATT 60.305 57.895 2.18 0.00 42.91 2.40
794 993 0.040958 CTCTGTCTGCCGTGTTTTGC 60.041 55.000 0.00 0.00 0.00 3.68
846 1049 7.543868 CGAGATTGGATATAAAGAACTAGGCAG 59.456 40.741 0.00 0.00 0.00 4.85
895 1099 4.338118 TGTTCTTGGTGAAGCGAGATTTTT 59.662 37.500 0.42 0.00 35.01 1.94
896 1100 3.882888 TGTTCTTGGTGAAGCGAGATTTT 59.117 39.130 0.42 0.00 35.01 1.82
897 1101 3.476552 TGTTCTTGGTGAAGCGAGATTT 58.523 40.909 0.42 0.00 35.01 2.17
898 1102 3.126001 TGTTCTTGGTGAAGCGAGATT 57.874 42.857 0.42 0.00 35.01 2.40
899 1103 2.839486 TGTTCTTGGTGAAGCGAGAT 57.161 45.000 0.42 0.00 35.01 2.75
900 1104 2.102420 TCTTGTTCTTGGTGAAGCGAGA 59.898 45.455 0.00 0.00 35.01 4.04
901 1105 2.483876 TCTTGTTCTTGGTGAAGCGAG 58.516 47.619 0.00 0.00 35.01 5.03
902 1106 2.613026 TCTTGTTCTTGGTGAAGCGA 57.387 45.000 0.00 0.00 35.01 4.93
903 1107 2.872245 TCTTCTTGTTCTTGGTGAAGCG 59.128 45.455 0.00 0.00 35.01 4.68
904 1108 4.900635 TTCTTCTTGTTCTTGGTGAAGC 57.099 40.909 0.00 0.00 35.01 3.86
905 1109 6.072452 GGGTATTCTTCTTGTTCTTGGTGAAG 60.072 42.308 0.00 0.00 35.01 3.02
906 1110 5.768164 GGGTATTCTTCTTGTTCTTGGTGAA 59.232 40.000 0.00 0.00 0.00 3.18
907 1111 5.163141 TGGGTATTCTTCTTGTTCTTGGTGA 60.163 40.000 0.00 0.00 0.00 4.02
908 1112 5.070001 TGGGTATTCTTCTTGTTCTTGGTG 58.930 41.667 0.00 0.00 0.00 4.17
909 1113 5.319043 TGGGTATTCTTCTTGTTCTTGGT 57.681 39.130 0.00 0.00 0.00 3.67
910 1114 6.447162 GTTTGGGTATTCTTCTTGTTCTTGG 58.553 40.000 0.00 0.00 0.00 3.61
911 1115 6.040391 TGGTTTGGGTATTCTTCTTGTTCTTG 59.960 38.462 0.00 0.00 0.00 3.02
912 1116 6.133356 TGGTTTGGGTATTCTTCTTGTTCTT 58.867 36.000 0.00 0.00 0.00 2.52
913 1117 5.701224 TGGTTTGGGTATTCTTCTTGTTCT 58.299 37.500 0.00 0.00 0.00 3.01
934 1139 6.148264 GCTGATCTTTCTGTTTCTTTTCTGG 58.852 40.000 0.00 0.00 0.00 3.86
989 1195 0.672401 TTCTTTTCGCGCCCGATTCT 60.672 50.000 0.00 0.00 43.97 2.40
990 1196 0.247695 CTTCTTTTCGCGCCCGATTC 60.248 55.000 0.00 0.00 43.97 2.52
991 1197 0.672401 TCTTCTTTTCGCGCCCGATT 60.672 50.000 0.00 0.00 43.97 3.34
992 1198 1.079405 TCTTCTTTTCGCGCCCGAT 60.079 52.632 0.00 0.00 43.97 4.18
993 1199 1.736645 CTCTTCTTTTCGCGCCCGA 60.737 57.895 0.00 0.00 42.66 5.14
994 1200 1.289109 TTCTCTTCTTTTCGCGCCCG 61.289 55.000 0.00 0.00 0.00 6.13
995 1201 0.166161 GTTCTCTTCTTTTCGCGCCC 59.834 55.000 0.00 0.00 0.00 6.13
996 1202 0.865769 TGTTCTCTTCTTTTCGCGCC 59.134 50.000 0.00 0.00 0.00 6.53
997 1203 1.792949 TCTGTTCTCTTCTTTTCGCGC 59.207 47.619 0.00 0.00 0.00 6.86
998 1204 3.736252 TCTTCTGTTCTCTTCTTTTCGCG 59.264 43.478 0.00 0.00 0.00 5.87
999 1205 4.375506 CGTCTTCTGTTCTCTTCTTTTCGC 60.376 45.833 0.00 0.00 0.00 4.70
1000 1206 4.740695 ACGTCTTCTGTTCTCTTCTTTTCG 59.259 41.667 0.00 0.00 0.00 3.46
1001 1207 5.749109 TCACGTCTTCTGTTCTCTTCTTTTC 59.251 40.000 0.00 0.00 0.00 2.29
1002 1208 5.661458 TCACGTCTTCTGTTCTCTTCTTTT 58.339 37.500 0.00 0.00 0.00 2.27
1003 1209 5.263968 TCACGTCTTCTGTTCTCTTCTTT 57.736 39.130 0.00 0.00 0.00 2.52
1004 1210 4.920640 TCACGTCTTCTGTTCTCTTCTT 57.079 40.909 0.00 0.00 0.00 2.52
1020 1226 2.540515 CACCATTCTCGCTAATCACGT 58.459 47.619 0.00 0.00 0.00 4.49
1055 1261 2.365635 GGCCTCTGGACCTGGCTA 60.366 66.667 18.39 0.00 45.45 3.93
1248 1466 1.684049 CCTCCCTCTCCTTGAGCGT 60.684 63.158 0.00 0.00 41.35 5.07
1307 1525 1.870016 CTCGCGGTCGAAGAAGAGC 60.870 63.158 6.13 0.00 44.98 4.09
1521 1755 1.000955 TCGCCAAGAAACAGAGGAGAC 59.999 52.381 0.00 0.00 0.00 3.36
1614 1857 8.565896 AGTGCACTGAAAATAACTGAATCATA 57.434 30.769 20.97 0.00 0.00 2.15
1631 1874 3.108289 CAGACGCGGAGTGCACTG 61.108 66.667 27.27 12.38 46.97 3.66
1641 1884 2.073816 ACTAAAATTCCACCAGACGCG 58.926 47.619 3.53 3.53 0.00 6.01
1642 1885 5.616488 TTTACTAAAATTCCACCAGACGC 57.384 39.130 0.00 0.00 0.00 5.19
1643 1886 9.769093 CTAAATTTACTAAAATTCCACCAGACG 57.231 33.333 0.00 0.00 43.04 4.18
1671 1914 2.568509 CCGGGTCCTGGTTAACTTTAGA 59.431 50.000 8.83 0.00 0.00 2.10
1742 1987 9.871238 CCTAAAGTAGTATCAAGAAAGCAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
1809 2054 2.960384 TCAACGAAGGAGAACCACACTA 59.040 45.455 0.00 0.00 38.94 2.74
1822 2067 0.095935 CGGCAGAGCATTCAACGAAG 59.904 55.000 0.00 0.00 0.00 3.79
1834 2079 0.249657 GCTAGATTCCCACGGCAGAG 60.250 60.000 0.00 0.00 0.00 3.35
1874 2119 8.228206 ACTGATGGATAAGACTAGATGTAAGGA 58.772 37.037 0.00 0.00 0.00 3.36
2003 2253 1.064685 TCTGGGAGATGTCGCTAGTGA 60.065 52.381 0.70 0.70 36.58 3.41
2108 2358 5.997385 ACTTCACACCACAAATTTATCGAC 58.003 37.500 0.00 0.00 0.00 4.20
2148 2398 6.913132 AGATCATCGACTACTTGACAAATACG 59.087 38.462 0.00 0.00 0.00 3.06
2246 2496 3.117491 TGGTCTTCTGTCTGCTTTCTG 57.883 47.619 0.00 0.00 0.00 3.02
2256 2506 1.490490 TCTGCCAACTTGGTCTTCTGT 59.510 47.619 9.63 0.00 40.46 3.41
2286 2536 3.149196 CATACTTTGCCACCAACTGAGT 58.851 45.455 0.00 0.00 0.00 3.41
2412 2679 5.490139 ACGCAAATAATGAAGTGATCTGG 57.510 39.130 0.00 0.00 0.00 3.86
2471 2742 2.434331 CCCCTTTCTGTTCGCCCA 59.566 61.111 0.00 0.00 0.00 5.36
2481 2752 2.550277 ATTCCATTCCCACCCCTTTC 57.450 50.000 0.00 0.00 0.00 2.62
2615 2886 1.858458 CGACAGCGTCTGAAGAAACAA 59.142 47.619 12.77 0.00 35.18 2.83
2644 2916 4.963276 TGAAATTTCAGGATTGCGTAGG 57.037 40.909 16.91 0.00 32.50 3.18
2763 3035 5.107607 GCAAATCATTTGAGTGCAAGAACTG 60.108 40.000 14.65 0.00 43.26 3.16
2775 3047 9.462174 CTTGTAAGTTGTAAGCAAATCATTTGA 57.538 29.630 14.65 0.00 43.26 2.69
2776 3048 9.248291 ACTTGTAAGTTGTAAGCAAATCATTTG 57.752 29.630 5.68 5.68 38.75 2.32
2780 3052 8.511321 CCATACTTGTAAGTTGTAAGCAAATCA 58.489 33.333 2.20 0.00 40.37 2.57
2781 3053 8.726988 TCCATACTTGTAAGTTGTAAGCAAATC 58.273 33.333 2.20 0.00 40.37 2.17
2782 3054 8.630054 TCCATACTTGTAAGTTGTAAGCAAAT 57.370 30.769 2.20 0.00 40.37 2.32
2784 3056 7.717875 AGTTCCATACTTGTAAGTTGTAAGCAA 59.282 33.333 2.20 0.00 40.37 3.91
2796 3075 4.595781 ACCAGGTTCAGTTCCATACTTGTA 59.404 41.667 0.00 0.00 33.85 2.41
2824 3103 6.323739 AGTTTTGAGCCAGTTCCTTCATAAAA 59.676 34.615 0.00 0.00 0.00 1.52
2879 3161 1.659098 CAATCCAAGCGTAGTTCGTCC 59.341 52.381 0.00 0.00 42.13 4.79
2880 3162 1.060698 GCAATCCAAGCGTAGTTCGTC 59.939 52.381 0.00 0.00 42.13 4.20
2978 3260 4.707105 TCATGATGTTGCCATACTGTAGG 58.293 43.478 0.00 0.00 0.00 3.18
3090 3372 8.149647 TCCCCATTTGCATATTTTACATGATTC 58.850 33.333 0.00 0.00 0.00 2.52
3198 3506 1.204941 GCGTGACACCTTAGGATGTCT 59.795 52.381 23.76 0.00 44.59 3.41
3227 3535 7.607250 ACTCTCCAAGACTAAAACTCTGTATG 58.393 38.462 0.00 0.00 0.00 2.39
3229 3537 7.094890 CGTACTCTCCAAGACTAAAACTCTGTA 60.095 40.741 0.00 0.00 0.00 2.74
3230 3538 6.294065 CGTACTCTCCAAGACTAAAACTCTGT 60.294 42.308 0.00 0.00 0.00 3.41
3302 3610 2.881734 TGACTCATGGGAGATCGCTAT 58.118 47.619 0.00 0.00 44.26 2.97
3305 3613 1.342496 TCATGACTCATGGGAGATCGC 59.658 52.381 17.33 0.00 44.26 4.58
3309 3617 2.825223 ACTGTCATGACTCATGGGAGA 58.175 47.619 25.55 2.12 44.26 3.71
3312 3620 3.947868 AGAAACTGTCATGACTCATGGG 58.052 45.455 25.55 11.34 41.66 4.00
3357 3665 5.250200 TGTCTGACAGTTTGTTACAAGGTT 58.750 37.500 6.36 0.00 0.00 3.50
3407 3715 3.738282 CGAGAGGGCAGAAAATAAGATCG 59.262 47.826 0.00 0.00 0.00 3.69
3467 3775 3.058914 GGTTAGCGATGTCATATGCAACC 60.059 47.826 17.77 17.77 34.17 3.77
3569 3877 3.157087 ACACAAGCAGAGTTAAATGGGG 58.843 45.455 0.00 0.00 0.00 4.96
3638 3950 2.230750 CTCTGCTCATCGATATCTGCCA 59.769 50.000 0.00 0.00 0.00 4.92
3747 4059 1.474077 CCTGCCCAACAAAGCTGTATC 59.526 52.381 0.00 0.00 33.45 2.24
3831 4143 0.967380 GGCCCCAAACCAGATGACTG 60.967 60.000 0.00 0.00 43.12 3.51
3893 4205 6.401394 GCATATGATTACAGTGATGGCTAGA 58.599 40.000 6.97 0.00 0.00 2.43
3898 4210 3.999001 AGCGCATATGATTACAGTGATGG 59.001 43.478 11.47 0.00 0.00 3.51
4034 4346 4.965200 AGCTATTCATGAGGTTAGGACC 57.035 45.455 0.00 0.00 46.92 4.46
4056 4368 0.178947 TTTCCCGAAGCCATGGGTTT 60.179 50.000 28.91 13.79 46.13 3.27
4057 4369 0.041090 ATTTCCCGAAGCCATGGGTT 59.959 50.000 28.72 28.72 46.13 4.11
4099 4414 2.483876 TCAGTAACACTGCACAGCTTC 58.516 47.619 1.34 0.00 45.54 3.86
4102 4417 1.135859 GCATCAGTAACACTGCACAGC 60.136 52.381 1.34 0.20 45.54 4.40
4118 4433 1.531423 CCAGCCAGGATATGTGCATC 58.469 55.000 0.00 0.00 41.22 3.91
4120 4435 0.987613 TCCCAGCCAGGATATGTGCA 60.988 55.000 0.00 0.00 41.22 4.57
4121 4436 0.403271 ATCCCAGCCAGGATATGTGC 59.597 55.000 3.27 0.00 45.14 4.57
4143 4461 6.299805 TGCTTCTGTCATATCCTTACTGTT 57.700 37.500 0.00 0.00 0.00 3.16
4159 4477 5.631512 GCTTCCTCGTAATACTATGCTTCTG 59.368 44.000 0.00 0.00 0.00 3.02
4169 4487 3.995048 GGGCTTATGCTTCCTCGTAATAC 59.005 47.826 0.13 0.00 39.59 1.89
4176 4494 1.300481 GAACGGGCTTATGCTTCCTC 58.700 55.000 0.13 0.00 39.59 3.71
4225 4543 0.397941 TCCTGAAGCTGGACCTTGTG 59.602 55.000 0.00 0.00 0.00 3.33
4255 4573 7.775053 AAACAGTTAATCAAAGCCCTCATAA 57.225 32.000 0.00 0.00 0.00 1.90
4260 4578 7.410991 ACCTATAAACAGTTAATCAAAGCCCT 58.589 34.615 0.00 0.00 0.00 5.19
4315 4641 6.417635 AGAACAACATACAAAATGCAACTTCG 59.582 34.615 0.00 0.00 0.00 3.79
4317 4643 6.701400 GGAGAACAACATACAAAATGCAACTT 59.299 34.615 0.00 0.00 0.00 2.66
4339 4665 2.512515 GCCAGCGGTGCTTAGGAG 60.513 66.667 9.63 0.00 36.40 3.69
4356 4682 2.218953 ACACAGTCACACTAACACCG 57.781 50.000 0.00 0.00 0.00 4.94
4363 4689 7.723324 ACATAAACTAGTAACACAGTCACACT 58.277 34.615 0.00 0.00 0.00 3.55
4438 5911 6.071560 ACGGTTTAGTCAAGATCACATACTCA 60.072 38.462 0.00 0.00 0.00 3.41
4439 5912 6.253727 CACGGTTTAGTCAAGATCACATACTC 59.746 42.308 0.00 0.00 0.00 2.59
4440 5913 6.100004 CACGGTTTAGTCAAGATCACATACT 58.900 40.000 0.00 0.00 0.00 2.12
4441 5914 5.220416 GCACGGTTTAGTCAAGATCACATAC 60.220 44.000 0.00 0.00 0.00 2.39
4442 5915 4.868171 GCACGGTTTAGTCAAGATCACATA 59.132 41.667 0.00 0.00 0.00 2.29
4443 5916 3.684788 GCACGGTTTAGTCAAGATCACAT 59.315 43.478 0.00 0.00 0.00 3.21
4444 5917 3.064207 GCACGGTTTAGTCAAGATCACA 58.936 45.455 0.00 0.00 0.00 3.58
4445 5918 3.326747 AGCACGGTTTAGTCAAGATCAC 58.673 45.455 0.00 0.00 0.00 3.06
4446 5919 3.678056 AGCACGGTTTAGTCAAGATCA 57.322 42.857 0.00 0.00 0.00 2.92
4455 5931 4.056050 AGTACACTCAAAGCACGGTTTAG 58.944 43.478 0.00 0.00 0.00 1.85
4459 5935 2.609737 GCTAGTACACTCAAAGCACGGT 60.610 50.000 0.00 0.00 33.38 4.83
4468 5944 2.747989 CGTCTCCAAGCTAGTACACTCA 59.252 50.000 0.00 0.00 0.00 3.41
4491 5967 5.639931 TGCGTATAGTTCAACAATGCAAGTA 59.360 36.000 0.00 0.00 0.00 2.24
4494 5970 5.331098 CATGCGTATAGTTCAACAATGCAA 58.669 37.500 8.09 0.00 33.10 4.08
4496 5972 4.282068 CCATGCGTATAGTTCAACAATGC 58.718 43.478 0.00 0.00 0.00 3.56
4497 5973 4.035558 AGCCATGCGTATAGTTCAACAATG 59.964 41.667 0.00 0.00 0.00 2.82
4498 5974 4.035558 CAGCCATGCGTATAGTTCAACAAT 59.964 41.667 0.00 0.00 0.00 2.71
4499 5975 3.373748 CAGCCATGCGTATAGTTCAACAA 59.626 43.478 0.00 0.00 0.00 2.83
4500 5976 2.935849 CAGCCATGCGTATAGTTCAACA 59.064 45.455 0.00 0.00 0.00 3.33
4501 5977 3.194861 TCAGCCATGCGTATAGTTCAAC 58.805 45.455 0.00 0.00 0.00 3.18
4502 5978 3.535280 TCAGCCATGCGTATAGTTCAA 57.465 42.857 0.00 0.00 0.00 2.69
4503 5979 3.118775 AGTTCAGCCATGCGTATAGTTCA 60.119 43.478 0.00 0.00 0.00 3.18
4504 5980 3.246226 CAGTTCAGCCATGCGTATAGTTC 59.754 47.826 0.00 0.00 0.00 3.01
4505 5981 3.198068 CAGTTCAGCCATGCGTATAGTT 58.802 45.455 0.00 0.00 0.00 2.24
4506 5982 2.826428 CAGTTCAGCCATGCGTATAGT 58.174 47.619 0.00 0.00 0.00 2.12
4507 5983 1.528586 GCAGTTCAGCCATGCGTATAG 59.471 52.381 0.00 0.00 0.00 1.31
4508 5984 1.138859 AGCAGTTCAGCCATGCGTATA 59.861 47.619 0.00 0.00 44.64 1.47
4509 5985 0.107508 AGCAGTTCAGCCATGCGTAT 60.108 50.000 0.00 0.00 44.64 3.06
4510 5986 1.020861 CAGCAGTTCAGCCATGCGTA 61.021 55.000 0.00 0.00 44.64 4.42
4511 5987 2.033141 AGCAGTTCAGCCATGCGT 59.967 55.556 0.00 0.00 44.64 5.24
4512 5988 1.579964 TTCAGCAGTTCAGCCATGCG 61.580 55.000 0.00 0.00 44.64 4.73
4513 5989 0.599558 TTTCAGCAGTTCAGCCATGC 59.400 50.000 0.00 0.00 40.29 4.06
4514 5990 3.054878 GTTTTTCAGCAGTTCAGCCATG 58.945 45.455 0.00 0.00 34.23 3.66
4515 5991 2.036346 GGTTTTTCAGCAGTTCAGCCAT 59.964 45.455 0.00 0.00 34.23 4.40
4516 5992 1.408702 GGTTTTTCAGCAGTTCAGCCA 59.591 47.619 0.00 0.00 34.23 4.75
4517 5993 1.683385 AGGTTTTTCAGCAGTTCAGCC 59.317 47.619 0.00 0.00 34.23 4.85
4518 5994 2.735823 CAGGTTTTTCAGCAGTTCAGC 58.264 47.619 0.00 0.00 0.00 4.26
4519 5995 2.099592 TGCAGGTTTTTCAGCAGTTCAG 59.900 45.455 0.00 0.00 32.48 3.02
4520 5996 2.098614 TGCAGGTTTTTCAGCAGTTCA 58.901 42.857 0.00 0.00 32.48 3.18
4521 5997 2.735823 CTGCAGGTTTTTCAGCAGTTC 58.264 47.619 5.57 0.00 46.92 3.01
4522 5998 2.877043 CTGCAGGTTTTTCAGCAGTT 57.123 45.000 5.57 0.00 46.92 3.16
4525 6001 1.949525 GACTCTGCAGGTTTTTCAGCA 59.050 47.619 15.13 0.00 35.43 4.41
4526 6002 2.225467 AGACTCTGCAGGTTTTTCAGC 58.775 47.619 15.13 0.00 0.00 4.26
4527 6003 4.096984 ACAAAGACTCTGCAGGTTTTTCAG 59.903 41.667 15.13 4.20 0.00 3.02
4528 6004 4.016444 ACAAAGACTCTGCAGGTTTTTCA 58.984 39.130 15.13 0.00 0.00 2.69
4529 6005 4.354587 CACAAAGACTCTGCAGGTTTTTC 58.645 43.478 15.13 3.51 0.00 2.29
4530 6006 3.131046 CCACAAAGACTCTGCAGGTTTTT 59.869 43.478 15.13 14.50 0.00 1.94
4531 6007 2.689983 CCACAAAGACTCTGCAGGTTTT 59.310 45.455 15.13 9.34 0.00 2.43
4532 6008 2.301346 CCACAAAGACTCTGCAGGTTT 58.699 47.619 15.13 6.19 0.00 3.27
4533 6009 1.212935 ACCACAAAGACTCTGCAGGTT 59.787 47.619 15.13 0.00 0.00 3.50
4534 6010 0.839946 ACCACAAAGACTCTGCAGGT 59.160 50.000 15.13 10.81 0.00 4.00
4535 6011 1.876156 GAACCACAAAGACTCTGCAGG 59.124 52.381 15.13 7.28 0.00 4.85
4536 6012 2.805099 GAGAACCACAAAGACTCTGCAG 59.195 50.000 7.63 7.63 0.00 4.41
4537 6013 2.803133 CGAGAACCACAAAGACTCTGCA 60.803 50.000 0.00 0.00 0.00 4.41
4538 6014 1.795286 CGAGAACCACAAAGACTCTGC 59.205 52.381 0.00 0.00 0.00 4.26
4539 6015 3.371102 TCGAGAACCACAAAGACTCTG 57.629 47.619 0.00 0.00 0.00 3.35
4540 6016 5.723672 TTATCGAGAACCACAAAGACTCT 57.276 39.130 0.00 0.00 0.00 3.24
4541 6017 7.974501 TCTTATTATCGAGAACCACAAAGACTC 59.025 37.037 0.00 0.00 0.00 3.36
4542 6018 7.760340 GTCTTATTATCGAGAACCACAAAGACT 59.240 37.037 17.45 0.00 37.31 3.24
4543 6019 7.253684 CGTCTTATTATCGAGAACCACAAAGAC 60.254 40.741 16.05 16.05 37.06 3.01
4550 6026 3.549423 CGCCGTCTTATTATCGAGAACCA 60.549 47.826 0.00 0.00 0.00 3.67
4558 6034 6.147581 TCAGTGATAACGCCGTCTTATTATC 58.852 40.000 0.00 0.00 35.49 1.75
4571 6047 2.223249 CCCGGCAATTTCAGTGATAACG 60.223 50.000 0.00 0.00 0.00 3.18
4585 6061 4.659172 CAGTTCAGGGCCCGGCAA 62.659 66.667 18.43 9.74 0.00 4.52
4588 6064 2.045926 CTTCAGTTCAGGGCCCGG 60.046 66.667 18.44 17.71 0.00 5.73
4590 6066 2.095461 GATTTCTTCAGTTCAGGGCCC 58.905 52.381 16.46 16.46 0.00 5.80
4601 6077 9.921637 AACTTAAAAACAGTGTTGATTTCTTCA 57.078 25.926 9.79 0.00 30.09 3.02
4652 6155 3.476552 ACCAGTTTGAATCTTCAGCGAA 58.523 40.909 0.00 0.00 38.61 4.70
4653 6156 3.067106 GACCAGTTTGAATCTTCAGCGA 58.933 45.455 0.00 0.00 38.61 4.93
4654 6157 2.160417 GGACCAGTTTGAATCTTCAGCG 59.840 50.000 0.00 0.00 38.61 5.18
4665 6168 2.679837 CGAGGATGAATGGACCAGTTTG 59.320 50.000 0.00 0.00 0.00 2.93
4669 6172 2.289320 GGATCGAGGATGAATGGACCAG 60.289 54.545 0.00 0.00 0.00 4.00
4674 6177 3.136763 CTGTTGGATCGAGGATGAATGG 58.863 50.000 0.00 0.00 0.00 3.16
4680 6183 3.041211 TGGAATCTGTTGGATCGAGGAT 58.959 45.455 0.00 0.00 32.76 3.24
4681 6184 2.168521 GTGGAATCTGTTGGATCGAGGA 59.831 50.000 0.00 0.00 32.76 3.71
4694 6197 4.275936 GCGCCATAAGTAAATGTGGAATCT 59.724 41.667 0.00 0.00 33.53 2.40
4703 6206 5.031066 TCTACTTGGCGCCATAAGTAAAT 57.969 39.130 30.92 15.45 38.50 1.40
4705 6208 3.740141 GCTCTACTTGGCGCCATAAGTAA 60.740 47.826 30.92 22.72 38.50 2.24
4713 6216 3.188786 CGTGCTCTACTTGGCGCC 61.189 66.667 22.73 22.73 35.81 6.53
4715 6218 2.432456 TGCGTGCTCTACTTGGCG 60.432 61.111 0.00 0.00 0.00 5.69
4718 6221 0.164647 GCAACTGCGTGCTCTACTTG 59.835 55.000 0.00 0.00 41.51 3.16
4733 6236 1.822250 GATCGAAGATCGCCGGCAAC 61.822 60.000 28.98 16.56 45.12 4.17
4734 6237 1.591594 GATCGAAGATCGCCGGCAA 60.592 57.895 28.98 9.13 45.12 4.52
4735 6238 2.027605 GATCGAAGATCGCCGGCA 59.972 61.111 28.98 14.46 45.12 5.69
4736 6239 3.100191 CGATCGAAGATCGCCGGC 61.100 66.667 19.07 19.07 45.12 6.13
4738 6241 1.726322 GTCCGATCGAAGATCGCCG 60.726 63.158 22.45 12.70 45.12 6.46
4739 6242 1.726322 CGTCCGATCGAAGATCGCC 60.726 63.158 22.45 15.12 45.12 5.54
4740 6243 1.726322 CCGTCCGATCGAAGATCGC 60.726 63.158 22.45 11.79 45.12 4.58
4761 6264 4.760047 CACCCCAGGACGAAGCGG 62.760 72.222 0.00 0.00 0.00 5.52
4762 6265 4.760047 CCACCCCAGGACGAAGCG 62.760 72.222 0.00 0.00 0.00 4.68
4763 6266 2.240162 CTACCACCCCAGGACGAAGC 62.240 65.000 0.00 0.00 0.00 3.86
4773 6276 2.370849 TCAGAAAGTGAACTACCACCCC 59.629 50.000 0.00 0.00 37.76 4.95
4781 6284 5.189180 AGAGCTTTTGTCAGAAAGTGAACT 58.811 37.500 0.00 0.00 38.56 3.01
4789 6292 3.470709 CAGGTGAGAGCTTTTGTCAGAA 58.529 45.455 0.00 0.00 28.32 3.02
4790 6293 2.808202 GCAGGTGAGAGCTTTTGTCAGA 60.808 50.000 0.00 0.00 28.32 3.27
4791 6294 1.534595 GCAGGTGAGAGCTTTTGTCAG 59.465 52.381 0.00 0.00 28.32 3.51
4792 6295 1.141657 AGCAGGTGAGAGCTTTTGTCA 59.858 47.619 0.00 0.00 38.01 3.58
4793 6296 1.803555 GAGCAGGTGAGAGCTTTTGTC 59.196 52.381 0.00 0.00 42.04 3.18
4794 6297 1.544314 GGAGCAGGTGAGAGCTTTTGT 60.544 52.381 0.00 0.00 42.04 2.83
4828 6331 5.183713 CCATTACACTTGGAGAGAAAATGCA 59.816 40.000 0.00 0.00 36.26 3.96
4829 6332 5.644644 CCATTACACTTGGAGAGAAAATGC 58.355 41.667 0.00 0.00 36.26 3.56
4830 6333 5.416952 AGCCATTACACTTGGAGAGAAAATG 59.583 40.000 0.00 0.00 36.26 2.32
4860 6363 5.010282 ACACCTGAAACTGAAGAAGTGTTT 58.990 37.500 0.00 0.00 39.81 2.83
4861 6364 4.589908 ACACCTGAAACTGAAGAAGTGTT 58.410 39.130 0.00 0.00 39.81 3.32
4862 6365 4.222124 ACACCTGAAACTGAAGAAGTGT 57.778 40.909 0.00 0.00 39.81 3.55
4863 6366 4.752101 CCTACACCTGAAACTGAAGAAGTG 59.248 45.833 0.00 0.00 39.81 3.16
4864 6367 4.654262 TCCTACACCTGAAACTGAAGAAGT 59.346 41.667 0.00 0.00 42.60 3.01
4865 6368 5.215252 TCCTACACCTGAAACTGAAGAAG 57.785 43.478 0.00 0.00 0.00 2.85
4866 6369 5.130477 ACTTCCTACACCTGAAACTGAAGAA 59.870 40.000 0.00 0.00 33.84 2.52
4867 6370 4.654262 ACTTCCTACACCTGAAACTGAAGA 59.346 41.667 0.00 0.00 33.84 2.87
4869 6372 5.123227 CAACTTCCTACACCTGAAACTGAA 58.877 41.667 0.00 0.00 0.00 3.02
4870 6373 4.444306 CCAACTTCCTACACCTGAAACTGA 60.444 45.833 0.00 0.00 0.00 3.41
4871 6374 3.815401 CCAACTTCCTACACCTGAAACTG 59.185 47.826 0.00 0.00 0.00 3.16
4872 6375 3.747708 GCCAACTTCCTACACCTGAAACT 60.748 47.826 0.00 0.00 0.00 2.66
4879 6690 0.953960 CCGTGCCAACTTCCTACACC 60.954 60.000 0.00 0.00 0.00 4.16
4889 6700 3.302344 AACCATGCCCGTGCCAAC 61.302 61.111 0.00 0.00 36.33 3.77
4890 6701 3.301554 CAACCATGCCCGTGCCAA 61.302 61.111 0.00 0.00 36.33 4.52
4911 6722 5.703592 GGGGTTTTGAAACTGAAGTGTTTTT 59.296 36.000 6.57 0.00 39.86 1.94
4912 6723 5.221742 TGGGGTTTTGAAACTGAAGTGTTTT 60.222 36.000 6.57 0.00 39.86 2.43
4913 6724 4.284746 TGGGGTTTTGAAACTGAAGTGTTT 59.715 37.500 6.57 0.00 42.11 2.83
4914 6725 3.835395 TGGGGTTTTGAAACTGAAGTGTT 59.165 39.130 6.57 0.00 38.89 3.32
4915 6726 3.194755 GTGGGGTTTTGAAACTGAAGTGT 59.805 43.478 6.57 0.00 38.89 3.55
4916 6727 3.430236 GGTGGGGTTTTGAAACTGAAGTG 60.430 47.826 6.57 0.00 38.89 3.16
4917 6728 2.764010 GGTGGGGTTTTGAAACTGAAGT 59.236 45.455 6.57 0.00 38.89 3.01
4927 6738 1.112916 GGGAGTGTGGTGGGGTTTTG 61.113 60.000 0.00 0.00 0.00 2.44
5012 6827 1.480954 GAGGCTACAACCCGAGATTGA 59.519 52.381 0.00 0.00 0.00 2.57
5016 6831 2.707849 GCGAGGCTACAACCCGAGA 61.708 63.158 0.00 0.00 0.00 4.04
5018 6833 3.766691 GGCGAGGCTACAACCCGA 61.767 66.667 0.00 0.00 0.00 5.14
5027 6842 2.547826 GAATTTTACTACGGCGAGGCT 58.452 47.619 16.62 0.00 0.00 4.58
5037 6852 7.874016 TGTTAGTTCAAGCGAGGAATTTTACTA 59.126 33.333 0.00 0.00 0.00 1.82
5041 6856 5.531287 ACTGTTAGTTCAAGCGAGGAATTTT 59.469 36.000 0.00 0.00 0.00 1.82
5061 6876 5.991606 TGATCTTTCTGACGAAATGAACTGT 59.008 36.000 0.00 0.00 38.39 3.55
5069 6884 4.703897 ACCTTGTGATCTTTCTGACGAAA 58.296 39.130 0.00 0.00 37.55 3.46
5091 6906 3.408157 TGGACTAATACAGGCAGGGTA 57.592 47.619 0.00 0.00 31.57 3.69
5111 6926 8.980596 TGGCTTCAACAATTATAAATTCTGGAT 58.019 29.630 0.00 0.00 0.00 3.41
5123 6938 7.067372 CAGTGGAATCTATGGCTTCAACAATTA 59.933 37.037 3.39 0.00 29.30 1.40
5124 6939 5.954150 AGTGGAATCTATGGCTTCAACAATT 59.046 36.000 3.39 0.00 29.30 2.32
5125 6940 5.359009 CAGTGGAATCTATGGCTTCAACAAT 59.641 40.000 3.39 0.00 29.30 2.71
5126 6941 4.701651 CAGTGGAATCTATGGCTTCAACAA 59.298 41.667 3.39 0.00 29.30 2.83
5127 6942 4.263462 ACAGTGGAATCTATGGCTTCAACA 60.263 41.667 3.39 0.00 29.30 3.33
5135 6950 2.826428 CCGTGACAGTGGAATCTATGG 58.174 52.381 0.00 0.00 0.00 2.74
5138 6953 1.204704 CAGCCGTGACAGTGGAATCTA 59.795 52.381 0.00 0.00 0.00 1.98
5139 6954 0.036952 CAGCCGTGACAGTGGAATCT 60.037 55.000 0.00 0.00 0.00 2.40
5144 6959 0.107993 ATGATCAGCCGTGACAGTGG 60.108 55.000 0.09 0.00 34.75 4.00
5150 6965 1.069668 CCATCTCATGATCAGCCGTGA 59.930 52.381 0.09 0.00 37.02 4.35
5154 6969 2.367894 TGACTCCATCTCATGATCAGCC 59.632 50.000 0.09 0.00 0.00 4.85
5162 6977 7.904558 TCTAATTGTAGTGACTCCATCTCAT 57.095 36.000 0.00 0.00 0.00 2.90
5168 6983 9.421399 TCTCAATATCTAATTGTAGTGACTCCA 57.579 33.333 0.00 0.00 0.00 3.86
5175 6990 8.486210 TGCAAGGTCTCAATATCTAATTGTAGT 58.514 33.333 0.00 0.00 0.00 2.73
5193 7008 4.381932 CCATCCCTATTTTGTTGCAAGGTC 60.382 45.833 0.00 0.00 0.00 3.85
5202 7017 3.214328 GCGATCACCATCCCTATTTTGT 58.786 45.455 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.