AutoCloner

Multiple sequence alignment - TraesCS3B01G274200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G274200	chr3B	100.000	6518	0	0	1	6518	441860659	441854142	0.000000e+00	12037.0
1	TraesCS3B01G274200	chr3B	97.352	5099	108	11	4	5099	442390840	442385766	0.000000e+00	8643.0
2	TraesCS3B01G274200	chr3B	97.753	1424	31	1	5095	6518	442377281	442375859	0.000000e+00	2451.0
3	TraesCS3B01G274200	chr3B	93.289	149	9	1	1088	1236	442389666	442389519	1.100000e-52	219.0
4	TraesCS3B01G274200	chr3B	91.946	149	12	0	1088	1236	441859464	441859316	6.620000e-50	209.0
5	TraesCS3B01G274200	chr3B	91.946	149	12	0	1196	1344	441859572	441859424	6.620000e-50	209.0
6	TraesCS3B01G274200	chr3B	91.781	146	12	0	1199	1344	442389771	442389626	3.080000e-48	204.0
7	TraesCS3B01G274200	chr3B	82.573	241	27	7	6246	6471	111561676	111561436	1.430000e-46	198.0
8	TraesCS3B01G274200	chr3B	91.304	92	6	2	6034	6125	596427736	596427647	2.470000e-24	124.0
9	TraesCS3B01G274200	chr3B	80.769	156	22	6	5844	5999	713874928	713874781	1.490000e-21	115.0
10	TraesCS3B01G274200	chr7D	87.384	539	42	10	6003	6518	182827670	182827135	4.350000e-166	595.0
11	TraesCS3B01G274200	chr4A	86.716	542	46	12	6000	6518	207392762	207393300	4.380000e-161	579.0
12	TraesCS3B01G274200	chr5A	86.188	543	50	12	6000	6518	591742558	591743099	1.230000e-156	564.0
13	TraesCS3B01G274200	chr4B	85.824	522	47	12	6011	6509	471878632	471879149	4.480000e-146	529.0
14	TraesCS3B01G274200	chr4B	84.568	324	42	8	1	320	195482684	195483003	1.360000e-81	315.0
15	TraesCS3B01G274200	chr4B	84.259	324	44	7	1	320	195481292	195481612	6.350000e-80	309.0
16	TraesCS3B01G274200	chr4B	83.951	324	45	7	1	320	195479901	195480221	2.950000e-78	303.0
17	TraesCS3B01G274200	chr3D	88.235	306	28	7	15	316	317406949	317406648	6.210000e-95	359.0
18	TraesCS3B01G274200	chrUn	86.174	311	36	7	17	322	258570276	258569968	4.870000e-86	329.0
19	TraesCS3B01G274200	chrUn	85.209	311	39	7	17	322	12615119	12615427	4.910000e-81	313.0
20	TraesCS3B01G274200	chrUn	80.921	152	21	3	5848	5999	326548017	326548160	5.340000e-21	113.0
21	TraesCS3B01G274200	chrUn	82.707	133	17	1	5867	5999	328301348	328301222	5.340000e-21	113.0
22	TraesCS3B01G274200	chrUn	82.707	133	17	1	5867	5999	328304316	328304190	5.340000e-21	113.0
23	TraesCS3B01G274200	chrUn	82.707	133	17	1	5867	5999	351396347	351396221	5.340000e-21	113.0
24	TraesCS3B01G274200	chrUn	80.255	157	19	9	5845	5999	238524446	238524300	2.490000e-19	108.0
25	TraesCS3B01G274200	chrUn	80.255	157	19	9	5845	5999	238538555	238538409	2.490000e-19	108.0
26	TraesCS3B01G274200	chrUn	80.255	157	19	9	5845	5999	271023327	271023181	2.490000e-19	108.0
27	TraesCS3B01G274200	chr7B	83.636	330	47	7	1	325	501563022	501563349	2.950000e-78	303.0
28	TraesCS3B01G274200	chr2A	83.692	325	43	9	2	322	719299862	719299544	1.370000e-76	298.0
29	TraesCS3B01G274200	chr2A	80.612	98	16	3	3988	4084	659889127	659889032	9.070000e-09	73.1
30	TraesCS3B01G274200	chr1D	83.838	297	24	10	6246	6518	451983311	451983607	1.800000e-65	261.0
31	TraesCS3B01G274200	chr1D	91.803	183	12	3	2833	3012	79313771	79313589	1.080000e-62	252.0
32	TraesCS3B01G274200	chr1D	90.104	192	16	3	2831	3021	475818414	475818225	5.050000e-61	246.0
33	TraesCS3B01G274200	chr1D	89.474	95	9	1	6031	6125	182615282	182615375	1.150000e-22	119.0
34	TraesCS3B01G274200	chr5D	90.476	189	14	4	2827	3012	98272159	98271972	5.050000e-61	246.0
35	TraesCS3B01G274200	chr5D	85.714	70	9	1	3996	4064	160068225	160068156	9.070000e-09	73.1
36	TraesCS3B01G274200	chr3A	90.374	187	16	2	2831	3015	546798910	546799096	1.820000e-60	244.0
37	TraesCS3B01G274200	chr4D	90.323	186	16	2	2832	3015	497016839	497017024	6.530000e-60	243.0
38	TraesCS3B01G274200	chr4D	89.119	193	16	4	2832	3021	116251597	116251787	1.090000e-57	235.0
39	TraesCS3B01G274200	chr4D	87.234	141	14	4	6185	6324	84721095	84721232	2.430000e-34	158.0
40	TraesCS3B01G274200	chr6B	89.894	188	17	2	2834	3019	157939780	157939593	2.350000e-59	241.0
41	TraesCS3B01G274200	chr1A	82.609	299	26	11	6246	6518	356332056	356331758	2.350000e-59	241.0
42	TraesCS3B01G274200	chr1A	90.526	95	8	1	6031	6125	147346780	147346873	2.470000e-24	124.0
43	TraesCS3B01G274200	chr6A	89.785	186	18	1	2831	3015	342403145	342403330	3.040000e-58	237.0
44	TraesCS3B01G274200	chr6D	89.474	114	9	3	6003	6115	76111289	76111178	2.450000e-29	141.0
45	TraesCS3B01G274200	chr2D	94.737	38	2	0	630	667	354317711	354317674	7.060000e-05	60.2
46	TraesCS3B01G274200	chr2B	100.000	29	0	0	619	647	1777349	1777377	3.000000e-03	54.7
47	TraesCS3B01G274200	chr1B	100.000	29	0	0	4259	4287	642922265	642922293	3.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G274200	chr3B	441854142	441860659	6517	True	4151.666667	12037	94.630667	1	6518	3	chr3B.!!$R5	6517
1	TraesCS3B01G274200	chr3B	442385766	442390840	5074	True	3022.000000	8643	94.140667	4	5099	3	chr3B.!!$R6	5095
2	TraesCS3B01G274200	chr3B	442375859	442377281	1422	True	2451.000000	2451	97.753000	5095	6518	1	chr3B.!!$R2	1423
3	TraesCS3B01G274200	chr7D	182827135	182827670	535	True	595.000000	595	87.384000	6003	6518	1	chr7D.!!$R1	515
4	TraesCS3B01G274200	chr4A	207392762	207393300	538	False	579.000000	579	86.716000	6000	6518	1	chr4A.!!$F1	518
5	TraesCS3B01G274200	chr5A	591742558	591743099	541	False	564.000000	564	86.188000	6000	6518	1	chr5A.!!$F1	518
6	TraesCS3B01G274200	chr4B	471878632	471879149	517	False	529.000000	529	85.824000	6011	6509	1	chr4B.!!$F1	498
7	TraesCS3B01G274200	chr4B	195479901	195483003	3102	False	309.000000	315	84.259333	1	320	3	chr4B.!!$F2	319

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
384	1778	2.030805	GGATGGAAGCGATGTAAATGGC	60.031	50.000	0.00	0.0	0.00	4.40	F
1504	3053	1.039856	GGCAAAGAAGTGGAAGCCAA	58.960	50.000	0.00	0.0	41.63	4.52	F
2124	3674	2.027192	TGCCTTACAAGAGTGATGGGAC	60.027	50.000	0.00	0.0	0.00	4.46	F
3079	4924	1.867233	GACGCCTTGCATCATATCGTT	59.133	47.619	0.00	0.0	0.00	3.85	F
4593	6440	0.947244	AGTTTCTTGCAGAGCAACCG	59.053	50.000	0.00	0.0	43.99	4.44	F
4985	6832	2.075338	GCTGTCAGCAAAAGAGAGGAG	58.925	52.381	20.16	0.0	41.89	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2119	3669	1.488393	TCACATTCATATGCCGTCCCA	59.512	47.619	0.00	0.0	35.03	4.37	R
2790	4635	0.116940	ACCATCAAAAGGTGCCCCAT	59.883	50.000	0.00	0.0	38.13	4.00	R
3649	5496	3.410631	TTCATACCGAAACAGAGCCAA	57.589	42.857	0.00	0.0	0.00	4.52	R
4622	6469	1.308998	ACACTCCTCGCCAGTTTTTG	58.691	50.000	0.00	0.0	0.00	2.44	R
5508	7355	0.106149	ACCCGTGAGTTCACCTTGTC	59.894	55.000	6.68	0.0	43.66	3.18	R
5849	7696	1.308998	GGATAAACATCCCCTGTGCG	58.691	55.000	0.00	0.0	38.39	5.34	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	63	2.129823	ACACGAGTGTTCTACCAACG	57.870	50.000	2.62	0.00	41.83	4.10
77	78	2.485426	ACCAACGTCATGCTCTCAAATG	59.515	45.455	0.00	0.00	0.00	2.32
329	1723	6.408869	AGGGCATATTTTCAACAAAATCCAG	58.591	36.000	0.00	0.00	40.69	3.86
333	1727	7.816995	GGCATATTTTCAACAAAATCCAGTGTA	59.183	33.333	0.00	0.00	40.69	2.90
384	1778	2.030805	GGATGGAAGCGATGTAAATGGC	60.031	50.000	0.00	0.00	0.00	4.40
408	1802	2.742589	GCCCCGCTTATAGATTGCTAAC	59.257	50.000	0.00	0.00	0.00	2.34
489	1883	2.972713	GGGCTTTCTTTTCCTTTTCCCT	59.027	45.455	0.00	0.00	0.00	4.20
502	1896	8.547481	TTTCCTTTTCCCTTTTCTCTTTATGT	57.453	30.769	0.00	0.00	0.00	2.29
666	2215	7.713764	ATGTTTGTGCTTTCATAAAAGGTTC	57.286	32.000	0.00	0.00	41.87	3.62
781	2330	7.429920	TGTTTACATTTTGAAACGCTACAGTTC	59.570	33.333	0.00	0.00	38.19	3.01
907	2456	8.566260	TGACGTAAAGAGCTCTATATTAGTTCC	58.434	37.037	18.59	0.00	0.00	3.62
1071	2620	1.756950	GAGCCCCGGGGAAAATTCC	60.757	63.158	44.86	23.50	46.82	3.01
1135	2684	4.900635	TCAAAGAAGGTGAACAAGAAGC	57.099	40.909	0.00	0.00	0.00	3.86
1218	2767	1.153349	GGATCCCGAGGTTGTGCTC	60.153	63.158	0.00	0.00	0.00	4.26
1241	2790	4.966366	CGTTTCAAAGAAGCTGAACAAGAG	59.034	41.667	0.00	0.00	32.61	2.85
1279	2828	1.553248	GTACCAAAATGGGGGAAAGGC	59.447	52.381	0.87	0.00	43.37	4.35
1314	2863	1.075151	GGTCCGGGAAGAGGATCCT	60.075	63.158	16.13	16.13	40.30	3.24
1468	3017	2.933287	TGGTCGGGCAGGATGGTT	60.933	61.111	0.00	0.00	35.86	3.67
1504	3053	1.039856	GGCAAAGAAGTGGAAGCCAA	58.960	50.000	0.00	0.00	41.63	4.52
1506	3055	2.546584	GGCAAAGAAGTGGAAGCCAAAG	60.547	50.000	0.00	0.00	41.63	2.77
1554	3103	2.109126	GGTGCCAGAGGACATTCGC	61.109	63.158	0.00	0.00	0.00	4.70
1568	3117	2.353889	ACATTCGCTTGAGTGCATCATC	59.646	45.455	0.00	0.00	37.89	2.92
1625	3174	4.086457	CACAGGTTATTTTTGTAGGGCCT	58.914	43.478	12.58	12.58	0.00	5.19
1699	3248	9.793259	CCTATGGTTACACTATTTATCCATGTT	57.207	33.333	0.00	0.00	33.13	2.71
1721	3270	8.771521	TGTTGATTCAAAGGAATGGATCATAT	57.228	30.769	0.00	0.00	43.23	1.78
1780	3329	6.254281	ACAAGGAATTTTACAATCCACTCG	57.746	37.500	0.00	0.00	0.00	4.18
1793	3342	3.526931	TCCACTCGCCTCAAATTAGAG	57.473	47.619	0.00	0.00	35.39	2.43
1922	3471	5.861787	GGGTTTCATGTGTTTTTCCTATTCG	59.138	40.000	0.00	0.00	0.00	3.34
1944	3493	2.419673	TGCTATCAAACACGCAATCCTG	59.580	45.455	0.00	0.00	0.00	3.86
2119	3669	5.489792	TTCTTCTGCCTTACAAGAGTGAT	57.510	39.130	0.00	0.00	0.00	3.06
2124	3674	2.027192	TGCCTTACAAGAGTGATGGGAC	60.027	50.000	0.00	0.00	0.00	4.46
2148	3698	4.022589	GGCATATGAATGTGATCCCAACAG	60.023	45.833	6.97	0.00	35.38	3.16
2198	3748	7.809806	CCAGATGTGGTTTATGTCTTTTCTTTC	59.190	37.037	0.00	0.00	39.30	2.62
2392	4237	7.974501	TCGACAAATAATTCTACTCAGTTCCTC	59.025	37.037	0.00	0.00	0.00	3.71
2765	4610	3.142838	CCCTCGGCATTGGGCTTG	61.143	66.667	0.00	0.00	44.01	4.01
2790	4635	2.749682	CAGTGCCTGCTACCCACA	59.250	61.111	0.00	0.00	32.09	4.17
2876	4721	4.498241	CTTTTTGGGCTTCCAGAATAAGC	58.502	43.478	0.00	0.00	46.90	3.09
3079	4924	1.867233	GACGCCTTGCATCATATCGTT	59.133	47.619	0.00	0.00	0.00	3.85
3080	4925	1.867233	ACGCCTTGCATCATATCGTTC	59.133	47.619	0.00	0.00	0.00	3.95
3114	4959	2.501723	AGAACGCTCCTCCACACATATT	59.498	45.455	0.00	0.00	0.00	1.28
3115	4960	2.604046	ACGCTCCTCCACACATATTC	57.396	50.000	0.00	0.00	0.00	1.75
3199	5045	9.979578	TTTTGTAGCATTTGTATCTGAAATGTT	57.020	25.926	0.00	0.00	41.13	2.71
3598	5445	7.819900	GCCAATATACCCATAAGTCTACTTCAG	59.180	40.741	0.00	0.00	37.40	3.02
3649	5496	7.181125	ACACCCATAAGTCTACTTCAGAAAGAT	59.819	37.037	0.00	0.00	37.40	2.40
3792	5639	7.391554	TGAAAGAGGTGTAAATTCTCATCCTTG	59.608	37.037	0.00	0.00	0.00	3.61
3924	5771	5.211201	TGTGGATATTCATGGAGAGACTGA	58.789	41.667	0.00	0.00	0.00	3.41
3929	5776	4.686191	ATTCATGGAGAGACTGATGTCC	57.314	45.455	0.00	0.00	43.91	4.02
4053	5900	4.518970	GTCAATCTTAACAAACTCTGGCCA	59.481	41.667	4.71	4.71	0.00	5.36
4290	6137	6.529220	AGAGCACTATTTGGACCTGATATTC	58.471	40.000	0.00	0.00	0.00	1.75
4477	6324	3.633525	TGAATTGGGATCTTGCATAGCAC	59.366	43.478	0.00	0.00	38.71	4.40
4521	6368	9.760077	AATGACGAAAACTATACGATCCTTATT	57.240	29.630	0.00	0.00	0.00	1.40
4593	6440	0.947244	AGTTTCTTGCAGAGCAACCG	59.053	50.000	0.00	0.00	43.99	4.44
4652	6499	2.286418	GCGAGGAGTGTTTGTTTGTGAG	60.286	50.000	0.00	0.00	0.00	3.51
4676	6523	8.523915	AGAAACATTGCCAAGTATATCATCAA	57.476	30.769	0.00	0.00	0.00	2.57
4764	6611	4.380444	GGGCGCAAACATATCTTTCTGAAA	60.380	41.667	10.83	2.44	0.00	2.69
4803	6650	5.110814	TCTATGGGGTGGAATTTGTACAG	57.889	43.478	0.00	0.00	0.00	2.74
4809	6656	4.342665	GGGGTGGAATTTGTACAGTTTGAA	59.657	41.667	0.00	0.00	0.00	2.69
4857	6704	5.889289	AGTGTGTGTTGTTGGGTTAATAAGT	59.111	36.000	0.00	0.00	0.00	2.24
4870	6717	4.580580	GGTTAATAAGTGGATGCTTCCCTG	59.419	45.833	15.62	0.00	41.83	4.45
4931	6778	4.162888	TCTTTTGCTATCAGATCCTCTGCA	59.837	41.667	0.00	0.00	43.95	4.41
4985	6832	2.075338	GCTGTCAGCAAAAGAGAGGAG	58.925	52.381	20.16	0.00	41.89	3.69
5028	6875	5.502382	GCATACCGAGTACATGACAAATGTG	60.502	44.000	0.00	0.00	33.76	3.21
5100	6947	3.565214	TTCTTCGCAGGGTGCCCA	61.565	61.111	10.26	0.00	41.12	5.36
5202	7049	6.127451	GGGTTTTGAAACTGGAGAAGAGAAAA	60.127	38.462	6.57	0.00	38.89	2.29
5508	7355	4.143030	CGCATGGAATCTTATCTAAAGCCG	60.143	45.833	0.00	0.00	0.00	5.52
5534	7381	0.393132	TGAACTCACGGGTTTGTGCA	60.393	50.000	0.00	0.00	39.73	4.57
5537	7384	1.172180	ACTCACGGGTTTGTGCATGG	61.172	55.000	0.00	0.00	39.73	3.66
5686	7533	8.857098	TGTATTTTGTCTAGACTGTTACTCACT	58.143	33.333	23.01	1.15	0.00	3.41
5801	7648	1.372307	TGCACTGCAGCTAGCTTGA	59.628	52.632	16.46	3.11	45.94	3.02
5803	7650	0.167689	GCACTGCAGCTAGCTTGAAC	59.832	55.000	16.46	5.68	45.94	3.18
5813	7660	2.159787	GCTAGCTTGAACACATGTGTCG	60.160	50.000	30.64	19.29	44.13	4.35
5849	7696	0.318275	GATGACCGAGACCGATCAGC	60.318	60.000	0.00	0.00	42.37	4.26
5853	7700	2.951745	CGAGACCGATCAGCGCAC	60.952	66.667	11.47	0.00	39.11	5.34
5893	7740	6.536582	CCGAGACATCAAGATAGTTTGAACAT	59.463	38.462	0.00	0.00	40.21	2.71
6320	8170	7.393234	ACAAACTCATAAGCTTTGTTGGCTATA	59.607	33.333	3.20	0.00	39.30	1.31
6383	8244	3.376540	GCTAGTCCACGATGAGATTGTC	58.623	50.000	0.00	0.00	0.00	3.18
6396	8258	7.805071	ACGATGAGATTGTCTTTTGTTGATTTC	59.195	33.333	0.00	0.00	0.00	2.17
6405	8267	6.375736	TGTCTTTTGTTGATTTCAGTGGTGTA	59.624	34.615	0.00	0.00	0.00	2.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	63	3.425359	CCGACAACATTTGAGAGCATGAC	60.425	47.826	0.00	0.00	0.00	3.06
77	78	2.541588	GCATGACCATAATGCCGACAAC	60.542	50.000	0.00	0.00	43.78	3.32
384	1778	0.673644	CAATCTATAAGCGGGGCGGG	60.674	60.000	0.00	0.00	0.00	6.13
408	1802	2.444421	ACTGGGACCTGTAGTAGAACG	58.556	52.381	0.00	0.00	0.00	3.95
781	2330	0.437295	CGAAACACTTTAGCGACCCG	59.563	55.000	0.00	0.00	0.00	5.28
907	2456	1.447643	CTAGGCCTGGATTGGACCG	59.552	63.158	17.99	0.00	35.12	4.79
1031	2580	2.119801	TTTGCCCTTCATCAGCTCTC	57.880	50.000	0.00	0.00	0.00	3.20
1071	2620	6.942163	TTCTCCTCATCCTTATCCCTAATG	57.058	41.667	0.00	0.00	0.00	1.90
1089	2638	1.092345	GCGCAACCTCTGGATTCTCC	61.092	60.000	0.30	0.00	36.96	3.71
1098	2647	1.388547	TTGAAACAAGCGCAACCTCT	58.611	45.000	11.47	0.00	0.00	3.69
1135	2684	3.014085	TACCCGGCAGCTTCTTCCG	62.014	63.158	0.00	6.52	42.58	4.30
1218	2767	4.908736	TCTTGTTCAGCTTCTTTGAAACG	58.091	39.130	0.00	0.00	36.41	3.60
1279	2828	2.655364	CAGCCTATCCACGTCGCG	60.655	66.667	0.00	0.00	0.00	5.87
1314	2863	3.761218	TCTTTGAAACAAGCACAACCTCA	59.239	39.130	0.00	0.00	0.00	3.86
1554	3103	2.614779	ACAGTCGATGATGCACTCAAG	58.385	47.619	0.00	0.00	37.44	3.02
1568	3117	5.221891	AGCATAAGCAACAATAACAGTCG	57.778	39.130	0.00	0.00	45.49	4.18
1625	3174	8.138928	TCCTTCACTTCTCTATGAATCAAAGA	57.861	34.615	0.00	0.00	34.43	2.52
1699	3248	9.596308	AATCATATGATCCATTCCTTTGAATCA	57.404	29.630	18.44	0.00	34.81	2.57
1780	3329	9.237846	GTGCATAATAAAACTCTAATTTGAGGC	57.762	33.333	19.01	10.62	38.32	4.70
1793	3342	7.545265	TGCCTTGATCTTTGTGCATAATAAAAC	59.455	33.333	0.00	0.00	0.00	2.43
1922	3471	2.420022	AGGATTGCGTGTTTGATAGCAC	59.580	45.455	0.00	0.00	39.51	4.40
2119	3669	1.488393	TCACATTCATATGCCGTCCCA	59.512	47.619	0.00	0.00	35.03	4.37
2124	3674	2.781923	TGGGATCACATTCATATGCCG	58.218	47.619	0.00	0.00	34.10	5.69
2148	3698	6.474102	GGTTCGACTTATCAGATCTTTCACTC	59.526	42.308	0.00	0.00	0.00	3.51
2370	4215	9.582431	TTACGAGGAACTGAGTAGAATTATTTG	57.418	33.333	0.00	0.00	41.55	2.32
2456	4301	6.572167	ATTATCTAGGCTTGGTACTACGAC	57.428	41.667	0.00	0.00	0.00	4.34
2660	4505	0.464036	CATCACCAAGGGCTACGCTA	59.536	55.000	0.00	0.00	0.00	4.26
2670	4515	3.641434	AAGAGGGACATCATCACCAAG	57.359	47.619	0.00	0.00	0.00	3.61
2727	4572	4.403734	GGTTCCATCAAGGTTTTGTCCTA	58.596	43.478	0.00	0.00	36.74	2.94
2790	4635	0.116940	ACCATCAAAAGGTGCCCCAT	59.883	50.000	0.00	0.00	38.13	4.00
2876	4721	1.700186	GAATAAGCTGGGTAGGGGGAG	59.300	57.143	0.00	0.00	0.00	4.30
2938	4783	5.461032	AGAAGACACCTAGTGAAGACTTG	57.539	43.478	0.96	0.00	36.96	3.16
3191	5037	8.067784	CGCTTAACTTTCACTTCTAACATTTCA	58.932	33.333	0.00	0.00	0.00	2.69
3199	5045	4.373527	TGCACGCTTAACTTTCACTTCTA	58.626	39.130	0.00	0.00	0.00	2.10
3288	5134	7.656137	ACACTAACTACAACACATTCTTACCAG	59.344	37.037	0.00	0.00	0.00	4.00
3598	5445	8.223100	GTGTATTGGCATTCACAAAAATCTTTC	58.777	33.333	10.69	0.00	32.34	2.62
3649	5496	3.410631	TTCATACCGAAACAGAGCCAA	57.589	42.857	0.00	0.00	0.00	4.52
3720	5567	7.820872	GGCAATATTGGGGAAATCATTAATCTG	59.179	37.037	17.02	0.00	0.00	2.90
3924	5771	6.087456	ACATCTGAAGGTAGATATGGGACAT	58.913	40.000	0.00	0.00	38.11	3.06
3929	5776	6.708054	GGAACAACATCTGAAGGTAGATATGG	59.292	42.308	0.00	0.00	35.70	2.74
4235	6082	6.983474	AGTTCCTTTCACAACCAATTTTTG	57.017	33.333	0.00	0.00	0.00	2.44
4236	6083	7.663493	TCAAAGTTCCTTTCACAACCAATTTTT	59.337	29.630	0.00	0.00	30.60	1.94
4261	6108	5.473504	TCAGGTCCAAATAGTGCTCTTTTTC	59.526	40.000	0.00	0.00	0.00	2.29
4499	6346	8.627403	TCTCAATAAGGATCGTATAGTTTTCGT	58.373	33.333	0.00	0.00	0.00	3.85
4521	6368	4.397103	GCTGACAAATCATGACCATTCTCA	59.603	41.667	0.00	0.00	33.22	3.27
4622	6469	1.308998	ACACTCCTCGCCAGTTTTTG	58.691	50.000	0.00	0.00	0.00	2.44
4652	6499	9.754382	ATTTGATGATATACTTGGCAATGTTTC	57.246	29.630	0.00	0.00	0.00	2.78
4676	6523	4.255510	ACAAGGTATGCAAGGATGGATT	57.744	40.909	0.00	0.00	38.66	3.01
4764	6611	5.264395	CCATAGAATTTGACTTTGGACCCT	58.736	41.667	0.00	0.00	38.24	4.34
4803	6650	6.974622	TGTCTTCTGCTTGATTTTCTTCAAAC	59.025	34.615	0.00	0.00	35.31	2.93
4809	6656	6.645790	ACATTGTCTTCTGCTTGATTTTCT	57.354	33.333	0.00	0.00	0.00	2.52
4870	6717	5.622346	AAATCACTAGGGATGAGGTCTTC	57.378	43.478	8.62	0.00	0.00	2.87
4931	6778	3.160269	CCTTTCCCTGCTTCAAGATTGT	58.840	45.455	0.00	0.00	0.00	2.71
5028	6875	8.621286	CCATCTTTACCACATAACATAGGTTTC	58.379	37.037	0.00	0.00	38.45	2.78
5100	6947	7.676683	AGTGTCTACCCATGTTTCTATGTAT	57.323	36.000	0.00	0.00	0.00	2.29
5202	7049	4.656112	TCCAACTTCTCTTTGTTCTCCTCT	59.344	41.667	0.00	0.00	0.00	3.69
5484	7331	4.378874	GGCTTTAGATAAGATTCCATGCGC	60.379	45.833	0.00	0.00	0.00	6.09
5508	7355	0.106149	ACCCGTGAGTTCACCTTGTC	59.894	55.000	6.68	0.00	43.66	3.18
5524	7371	4.740431	GCCGCCATGCACAAACCC	62.740	66.667	0.00	0.00	0.00	4.11
5549	7396	3.365364	GCACACAAACCTATCAGTGAAGC	60.365	47.826	0.00	0.00	35.97	3.86
5677	7524	4.913924	CAGTTACGGTGTGTAGTGAGTAAC	59.086	45.833	7.87	7.87	42.20	2.50
5732	7579	2.318908	TCATGACTTGGCTGCCTTTTT	58.681	42.857	21.03	1.01	0.00	1.94
5789	7636	1.808945	ACATGTGTTCAAGCTAGCTGC	59.191	47.619	20.16	9.75	43.29	5.25
5801	7648	6.791303	ACAAATTTTCTACGACACATGTGTT	58.209	32.000	31.03	19.33	45.05	3.32
5803	7650	8.948853	AATACAAATTTTCTACGACACATGTG	57.051	30.769	24.25	24.25	0.00	3.21
5813	7660	9.490663	CTCGGTCATCAAATACAAATTTTCTAC	57.509	33.333	0.00	0.00	32.87	2.59
5849	7696	1.308998	GGATAAACATCCCCTGTGCG	58.691	55.000	0.00	0.00	38.39	5.34
6139	7988	3.260884	TGCTTTCTGTACCTTCCCTACTG	59.739	47.826	0.00	0.00	0.00	2.74
6320	8170	8.481492	TGAACAATATATTGCTGGATGGAAAT	57.519	30.769	22.66	0.00	41.38	2.17
6341	8191	6.759497	AGCCTACCAAAAGTATGAATGAAC	57.241	37.500	0.00	0.00	0.00	3.18
6383	8244	6.795399	ACTACACCACTGAAATCAACAAAAG	58.205	36.000	0.00	0.00	0.00	2.27
6396	8258	5.134202	TCAACTGACATACTACACCACTG	57.866	43.478	0.00	0.00	0.00	3.66
6405	8267	7.548097	AGTAACAATCGATCAACTGACATACT	58.452	34.615	0.00	3.28	0.00	2.12

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.