Multiple sequence alignment - TraesCS3B01G274000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G274000 chr3B 100.000 4644 0 0 1 4644 441279514 441284157 0.000000e+00 8576.0
1 TraesCS3B01G274000 chr3B 96.203 316 12 0 1 316 34157240 34156925 6.890000e-143 518.0
2 TraesCS3B01G274000 chr3B 96.203 316 12 0 1 316 34213096 34212781 6.890000e-143 518.0
3 TraesCS3B01G274000 chr3B 94.769 325 16 1 1 324 8497697 8498021 5.360000e-139 505.0
4 TraesCS3B01G274000 chr3B 95.253 316 15 0 1 316 34106373 34106058 6.940000e-138 501.0
5 TraesCS3B01G274000 chr3A 95.627 2561 90 13 1650 4201 460149850 460147303 0.000000e+00 4089.0
6 TraesCS3B01G274000 chr3A 93.045 949 41 7 725 1656 460151889 460150949 0.000000e+00 1363.0
7 TraesCS3B01G274000 chr3A 89.751 361 15 9 317 657 460152640 460152282 4.260000e-120 442.0
8 TraesCS3B01G274000 chr3A 87.879 231 12 4 4195 4418 460145651 460145430 1.660000e-64 257.0
9 TraesCS3B01G274000 chr3D 94.093 1439 42 12 3220 4644 342431611 342433020 0.000000e+00 2146.0
10 TraesCS3B01G274000 chr3D 96.003 1301 48 2 1938 3238 342429953 342431249 0.000000e+00 2111.0
11 TraesCS3B01G274000 chr3D 94.397 1178 52 6 720 1884 342428779 342429955 0.000000e+00 1797.0
12 TraesCS3B01G274000 chr3D 87.632 380 10 11 317 678 342428115 342428475 1.560000e-109 407.0
13 TraesCS3B01G274000 chr7B 96.203 316 12 0 1 316 413876809 413877124 6.890000e-143 518.0
14 TraesCS3B01G274000 chr5B 95.912 318 13 0 1 318 657135138 657135455 2.480000e-142 516.0
15 TraesCS3B01G274000 chr2B 95.570 316 14 0 1 316 790813027 790813342 1.490000e-139 507.0
16 TraesCS3B01G274000 chr4B 95.541 314 14 0 1 314 43182878 43183191 1.930000e-138 503.0
17 TraesCS3B01G274000 chr4B 93.827 324 20 0 1 324 506904604 506904281 5.400000e-134 488.0
18 TraesCS3B01G274000 chr1B 98.571 70 1 0 1000 1069 646172461 646172392 1.750000e-24 124.0
19 TraesCS3B01G274000 chr1A 97.101 69 2 0 1001 1069 560951771 560951703 2.940000e-22 117.0
20 TraesCS3B01G274000 chr6B 95.714 70 3 0 1000 1069 664805508 664805577 3.800000e-21 113.0
21 TraesCS3B01G274000 chr6B 82.143 84 15 0 4441 4524 646751820 646751903 6.450000e-09 73.1
22 TraesCS3B01G274000 chr1D 95.652 69 3 0 1001 1069 467928508 467928440 1.370000e-20 111.0
23 TraesCS3B01G274000 chr6A 82.143 84 14 1 4441 4523 574536550 574536633 2.320000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G274000 chr3B 441279514 441284157 4643 False 8576.00 8576 100.00000 1 4644 1 chr3B.!!$F2 4643
1 TraesCS3B01G274000 chr3A 460145430 460152640 7210 True 1537.75 4089 91.57550 317 4418 4 chr3A.!!$R1 4101
2 TraesCS3B01G274000 chr3D 342428115 342433020 4905 False 1615.25 2146 93.03125 317 4644 4 chr3D.!!$F1 4327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.031043 CCACATGCCACACACACAAG 59.969 55.0 0.00 0.00 0.00 3.16 F
284 285 0.032952 GTGTGTGGACGAGTTGGCTA 59.967 55.0 0.00 0.00 0.00 3.93 F
705 744 0.179158 GAAGCTTCCTCGTCGTCTCC 60.179 60.0 15.97 0.00 0.00 3.71 F
760 1113 0.909610 CACCCCACCTTGAGGAGCTA 60.910 60.0 3.59 0.00 38.94 3.32 F
2142 3618 0.249120 ATCCATCGCGTTCAAGTGGA 59.751 50.0 5.77 11.66 42.62 4.02 F
2726 4204 0.822121 GGTCAAGGAACACCACCACC 60.822 60.0 0.00 0.00 32.33 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 1903 0.037590 TGGGCAAAACCATAGCGAGT 59.962 50.000 0.00 0.00 42.05 4.18 R
2131 3607 0.110056 GCACTGCATCCACTTGAACG 60.110 55.000 0.00 0.00 0.00 3.95 R
2142 3618 1.878088 CTTCTTGAGTGTGCACTGCAT 59.122 47.619 19.41 0.55 42.66 3.96 R
2540 4018 5.362717 TCAGAAACCTTACTGACTTGACAGA 59.637 40.000 7.06 0.00 40.63 3.41 R
3091 4571 2.826674 TTTTCCAATAGCAGGGGAGG 57.173 50.000 0.00 0.00 31.19 4.30 R
4162 6030 0.443869 CAGTCAGCGTTGAAATCCCG 59.556 55.000 2.60 0.00 34.49 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.987777 TTCAAAAACATGGCAAATGACAG 57.012 34.783 5.69 0.00 35.91 3.51
23 24 3.808726 TCAAAAACATGGCAAATGACAGC 59.191 39.130 5.69 0.00 35.91 4.40
24 25 3.756933 AAAACATGGCAAATGACAGCT 57.243 38.095 5.69 0.00 35.91 4.24
25 26 3.756933 AAACATGGCAAATGACAGCTT 57.243 38.095 5.69 0.00 35.91 3.74
26 27 2.736144 ACATGGCAAATGACAGCTTG 57.264 45.000 5.69 0.00 35.91 4.01
27 28 1.274167 ACATGGCAAATGACAGCTTGG 59.726 47.619 5.69 0.00 35.91 3.61
28 29 0.899720 ATGGCAAATGACAGCTTGGG 59.100 50.000 0.00 0.00 35.91 4.12
29 30 0.469705 TGGCAAATGACAGCTTGGGT 60.470 50.000 0.00 0.00 0.00 4.51
30 31 0.037975 GGCAAATGACAGCTTGGGTG 60.038 55.000 0.00 0.00 37.06 4.61
32 33 1.603678 GCAAATGACAGCTTGGGTGTG 60.604 52.381 7.10 0.00 44.55 3.82
33 34 1.000060 CAAATGACAGCTTGGGTGTGG 60.000 52.381 7.10 0.00 44.55 4.17
34 35 0.540365 AATGACAGCTTGGGTGTGGG 60.540 55.000 7.10 0.00 44.55 4.61
35 36 1.426251 ATGACAGCTTGGGTGTGGGA 61.426 55.000 7.10 0.00 44.55 4.37
36 37 1.302832 GACAGCTTGGGTGTGGGAG 60.303 63.158 7.10 0.00 44.55 4.30
37 38 1.768684 GACAGCTTGGGTGTGGGAGA 61.769 60.000 7.10 0.00 44.55 3.71
38 39 1.002868 CAGCTTGGGTGTGGGAGAG 60.003 63.158 0.00 0.00 0.00 3.20
39 40 1.462238 AGCTTGGGTGTGGGAGAGT 60.462 57.895 0.00 0.00 0.00 3.24
40 41 1.302832 GCTTGGGTGTGGGAGAGTG 60.303 63.158 0.00 0.00 0.00 3.51
41 42 1.376466 CTTGGGTGTGGGAGAGTGG 59.624 63.158 0.00 0.00 0.00 4.00
42 43 2.129555 CTTGGGTGTGGGAGAGTGGG 62.130 65.000 0.00 0.00 0.00 4.61
43 44 2.203938 GGGTGTGGGAGAGTGGGA 60.204 66.667 0.00 0.00 0.00 4.37
44 45 2.294078 GGGTGTGGGAGAGTGGGAG 61.294 68.421 0.00 0.00 0.00 4.30
45 46 1.229209 GGTGTGGGAGAGTGGGAGA 60.229 63.158 0.00 0.00 0.00 3.71
46 47 0.836400 GGTGTGGGAGAGTGGGAGAA 60.836 60.000 0.00 0.00 0.00 2.87
47 48 1.280457 GTGTGGGAGAGTGGGAGAAT 58.720 55.000 0.00 0.00 0.00 2.40
48 49 1.065854 GTGTGGGAGAGTGGGAGAATG 60.066 57.143 0.00 0.00 0.00 2.67
49 50 1.203300 TGTGGGAGAGTGGGAGAATGA 60.203 52.381 0.00 0.00 0.00 2.57
50 51 1.208293 GTGGGAGAGTGGGAGAATGAC 59.792 57.143 0.00 0.00 0.00 3.06
51 52 1.203300 TGGGAGAGTGGGAGAATGACA 60.203 52.381 0.00 0.00 0.00 3.58
52 53 1.484240 GGGAGAGTGGGAGAATGACAG 59.516 57.143 0.00 0.00 0.00 3.51
53 54 2.183679 GGAGAGTGGGAGAATGACAGT 58.816 52.381 0.00 0.00 0.00 3.55
54 55 2.167487 GGAGAGTGGGAGAATGACAGTC 59.833 54.545 0.00 0.00 35.36 3.51
55 56 1.821753 AGAGTGGGAGAATGACAGTCG 59.178 52.381 0.00 0.00 39.07 4.18
56 57 1.546476 GAGTGGGAGAATGACAGTCGT 59.454 52.381 0.00 0.00 0.00 4.34
57 58 1.273606 AGTGGGAGAATGACAGTCGTG 59.726 52.381 0.00 0.00 0.00 4.35
58 59 0.608130 TGGGAGAATGACAGTCGTGG 59.392 55.000 0.00 0.00 0.00 4.94
59 60 0.108138 GGGAGAATGACAGTCGTGGG 60.108 60.000 0.00 0.00 0.00 4.61
60 61 0.895530 GGAGAATGACAGTCGTGGGA 59.104 55.000 0.00 0.00 0.00 4.37
61 62 1.134965 GGAGAATGACAGTCGTGGGAG 60.135 57.143 0.00 0.00 0.00 4.30
62 63 1.819288 GAGAATGACAGTCGTGGGAGA 59.181 52.381 0.00 0.00 0.00 3.71
63 64 2.428890 GAGAATGACAGTCGTGGGAGAT 59.571 50.000 0.00 0.00 0.00 2.75
64 65 2.167281 AGAATGACAGTCGTGGGAGATG 59.833 50.000 0.00 0.00 0.00 2.90
65 66 0.826715 ATGACAGTCGTGGGAGATGG 59.173 55.000 0.00 0.00 0.00 3.51
66 67 1.257750 TGACAGTCGTGGGAGATGGG 61.258 60.000 0.00 0.00 0.00 4.00
67 68 1.961180 GACAGTCGTGGGAGATGGGG 61.961 65.000 0.00 0.00 0.00 4.96
68 69 1.685765 CAGTCGTGGGAGATGGGGA 60.686 63.158 0.00 0.00 0.00 4.81
69 70 1.080354 AGTCGTGGGAGATGGGGAA 59.920 57.895 0.00 0.00 0.00 3.97
70 71 1.221021 GTCGTGGGAGATGGGGAAC 59.779 63.158 0.00 0.00 0.00 3.62
71 72 1.229368 TCGTGGGAGATGGGGAACA 60.229 57.895 0.00 0.00 0.00 3.18
72 73 1.221840 CGTGGGAGATGGGGAACAG 59.778 63.158 0.00 0.00 0.00 3.16
73 74 1.609783 GTGGGAGATGGGGAACAGG 59.390 63.158 0.00 0.00 0.00 4.00
74 75 0.914417 GTGGGAGATGGGGAACAGGA 60.914 60.000 0.00 0.00 0.00 3.86
75 76 0.621571 TGGGAGATGGGGAACAGGAG 60.622 60.000 0.00 0.00 0.00 3.69
76 77 0.621862 GGGAGATGGGGAACAGGAGT 60.622 60.000 0.00 0.00 0.00 3.85
77 78 0.543749 GGAGATGGGGAACAGGAGTG 59.456 60.000 0.00 0.00 0.00 3.51
78 79 0.543749 GAGATGGGGAACAGGAGTGG 59.456 60.000 0.00 0.00 0.00 4.00
79 80 0.178861 AGATGGGGAACAGGAGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
80 81 0.035056 GATGGGGAACAGGAGTGGTG 60.035 60.000 0.00 0.00 0.00 4.17
81 82 2.034221 GGGGAACAGGAGTGGTGC 59.966 66.667 0.00 0.00 0.00 5.01
82 83 2.358737 GGGAACAGGAGTGGTGCG 60.359 66.667 0.00 0.00 30.87 5.34
83 84 2.426023 GGAACAGGAGTGGTGCGT 59.574 61.111 0.00 0.00 0.00 5.24
84 85 1.961277 GGAACAGGAGTGGTGCGTG 60.961 63.158 0.00 0.00 0.00 5.34
85 86 1.961277 GAACAGGAGTGGTGCGTGG 60.961 63.158 0.00 0.00 0.00 4.94
86 87 4.626081 ACAGGAGTGGTGCGTGGC 62.626 66.667 0.00 0.00 0.00 5.01
110 111 3.121030 GCGCGACAGCAGTTCCAT 61.121 61.111 12.10 0.00 45.49 3.41
111 112 3.084579 CGCGACAGCAGTTCCATC 58.915 61.111 0.00 0.00 45.49 3.51
112 113 2.792290 CGCGACAGCAGTTCCATCG 61.792 63.158 0.00 0.00 45.49 3.84
113 114 3.084579 CGACAGCAGTTCCATCGC 58.915 61.111 0.00 0.00 0.00 4.58
114 115 1.737735 CGACAGCAGTTCCATCGCA 60.738 57.895 0.00 0.00 0.00 5.10
115 116 1.790387 GACAGCAGTTCCATCGCAC 59.210 57.895 0.00 0.00 0.00 5.34
116 117 1.959899 GACAGCAGTTCCATCGCACG 61.960 60.000 0.00 0.00 0.00 5.34
117 118 3.121030 AGCAGTTCCATCGCACGC 61.121 61.111 0.00 0.00 0.00 5.34
118 119 4.166011 GCAGTTCCATCGCACGCC 62.166 66.667 0.00 0.00 0.00 5.68
119 120 3.499737 CAGTTCCATCGCACGCCC 61.500 66.667 0.00 0.00 0.00 6.13
120 121 4.778143 AGTTCCATCGCACGCCCC 62.778 66.667 0.00 0.00 0.00 5.80
133 134 4.778143 GCCCCGACTGGCGAACAT 62.778 66.667 3.46 0.00 42.54 2.71
134 135 2.046314 CCCCGACTGGCGAACATT 60.046 61.111 3.46 0.00 44.57 2.71
135 136 2.398554 CCCCGACTGGCGAACATTG 61.399 63.158 3.46 0.00 44.57 2.82
136 137 2.398554 CCCGACTGGCGAACATTGG 61.399 63.158 3.46 0.00 44.57 3.16
137 138 2.480555 CGACTGGCGAACATTGGC 59.519 61.111 0.00 0.00 44.57 4.52
138 139 2.034879 CGACTGGCGAACATTGGCT 61.035 57.895 0.00 0.00 44.57 4.75
139 140 1.503542 GACTGGCGAACATTGGCTG 59.496 57.895 0.00 0.00 36.98 4.85
140 141 2.180017 CTGGCGAACATTGGCTGC 59.820 61.111 0.00 0.00 32.12 5.25
141 142 3.672255 CTGGCGAACATTGGCTGCG 62.672 63.158 0.00 0.00 32.12 5.18
142 143 4.481112 GGCGAACATTGGCTGCGG 62.481 66.667 0.00 0.00 32.12 5.69
143 144 3.430862 GCGAACATTGGCTGCGGA 61.431 61.111 0.00 0.00 0.00 5.54
144 145 2.787249 CGAACATTGGCTGCGGAG 59.213 61.111 0.00 0.00 0.00 4.63
145 146 1.741401 CGAACATTGGCTGCGGAGA 60.741 57.895 8.65 0.00 0.00 3.71
146 147 1.699656 CGAACATTGGCTGCGGAGAG 61.700 60.000 8.65 0.00 0.00 3.20
147 148 0.391661 GAACATTGGCTGCGGAGAGA 60.392 55.000 8.65 0.00 0.00 3.10
148 149 0.036732 AACATTGGCTGCGGAGAGAA 59.963 50.000 8.65 0.00 0.00 2.87
149 150 0.036732 ACATTGGCTGCGGAGAGAAA 59.963 50.000 8.65 0.00 0.00 2.52
150 151 1.167851 CATTGGCTGCGGAGAGAAAA 58.832 50.000 8.65 0.00 0.00 2.29
151 152 1.135575 CATTGGCTGCGGAGAGAAAAC 60.136 52.381 8.65 0.00 0.00 2.43
152 153 0.179032 TTGGCTGCGGAGAGAAAACA 60.179 50.000 8.65 0.00 0.00 2.83
153 154 0.603707 TGGCTGCGGAGAGAAAACAG 60.604 55.000 8.65 0.00 0.00 3.16
154 155 1.301677 GGCTGCGGAGAGAAAACAGG 61.302 60.000 8.65 0.00 0.00 4.00
155 156 1.916697 GCTGCGGAGAGAAAACAGGC 61.917 60.000 8.65 0.00 0.00 4.85
156 157 1.630244 CTGCGGAGAGAAAACAGGCG 61.630 60.000 0.00 0.00 0.00 5.52
157 158 1.668151 GCGGAGAGAAAACAGGCGT 60.668 57.895 0.00 0.00 0.00 5.68
158 159 1.901650 GCGGAGAGAAAACAGGCGTG 61.902 60.000 4.53 4.53 0.00 5.34
159 160 0.600255 CGGAGAGAAAACAGGCGTGT 60.600 55.000 6.15 6.15 39.19 4.49
160 161 0.868406 GGAGAGAAAACAGGCGTGTG 59.132 55.000 13.63 0.00 36.84 3.82
161 162 0.868406 GAGAGAAAACAGGCGTGTGG 59.132 55.000 13.63 0.00 36.84 4.17
162 163 0.535102 AGAGAAAACAGGCGTGTGGG 60.535 55.000 13.63 0.00 36.84 4.61
163 164 2.130073 GAGAAAACAGGCGTGTGGGC 62.130 60.000 13.63 5.33 36.84 5.36
173 174 4.717313 GTGTGGGCGAACTCCCCC 62.717 72.222 0.00 0.00 45.97 5.40
177 178 3.728373 GGGCGAACTCCCCCACAT 61.728 66.667 0.00 0.00 41.13 3.21
178 179 2.438434 GGCGAACTCCCCCACATG 60.438 66.667 0.00 0.00 0.00 3.21
179 180 3.134127 GCGAACTCCCCCACATGC 61.134 66.667 0.00 0.00 0.00 4.06
180 181 2.438434 CGAACTCCCCCACATGCC 60.438 66.667 0.00 0.00 0.00 4.40
181 182 2.763215 GAACTCCCCCACATGCCA 59.237 61.111 0.00 0.00 0.00 4.92
182 183 1.678970 GAACTCCCCCACATGCCAC 60.679 63.158 0.00 0.00 0.00 5.01
183 184 2.424842 GAACTCCCCCACATGCCACA 62.425 60.000 0.00 0.00 0.00 4.17
184 185 2.361610 CTCCCCCACATGCCACAC 60.362 66.667 0.00 0.00 0.00 3.82
185 186 3.181530 TCCCCCACATGCCACACA 61.182 61.111 0.00 0.00 0.00 3.72
186 187 2.990967 CCCCCACATGCCACACAC 60.991 66.667 0.00 0.00 0.00 3.82
187 188 2.203466 CCCCACATGCCACACACA 60.203 61.111 0.00 0.00 0.00 3.72
188 189 2.563798 CCCCACATGCCACACACAC 61.564 63.158 0.00 0.00 0.00 3.82
189 190 1.827354 CCCACATGCCACACACACA 60.827 57.895 0.00 0.00 0.00 3.72
190 191 1.390383 CCCACATGCCACACACACAA 61.390 55.000 0.00 0.00 0.00 3.33
191 192 0.031043 CCACATGCCACACACACAAG 59.969 55.000 0.00 0.00 0.00 3.16
192 193 0.740149 CACATGCCACACACACAAGT 59.260 50.000 0.00 0.00 0.00 3.16
193 194 1.134753 CACATGCCACACACACAAGTT 59.865 47.619 0.00 0.00 0.00 2.66
194 195 1.134753 ACATGCCACACACACAAGTTG 59.865 47.619 0.00 0.00 0.00 3.16
195 196 1.134753 CATGCCACACACACAAGTTGT 59.865 47.619 1.64 1.64 39.97 3.32
196 197 0.808125 TGCCACACACACAAGTTGTC 59.192 50.000 5.27 0.00 35.67 3.18
197 198 0.100503 GCCACACACACAAGTTGTCC 59.899 55.000 5.27 0.00 35.67 4.02
198 199 1.750193 CCACACACACAAGTTGTCCT 58.250 50.000 5.27 0.00 35.67 3.85
199 200 2.912771 CCACACACACAAGTTGTCCTA 58.087 47.619 5.27 0.00 35.67 2.94
200 201 2.612212 CCACACACACAAGTTGTCCTAC 59.388 50.000 5.27 0.00 35.67 3.18
201 202 2.284150 CACACACACAAGTTGTCCTACG 59.716 50.000 5.27 0.00 35.67 3.51
202 203 2.093869 ACACACACAAGTTGTCCTACGT 60.094 45.455 5.27 0.00 35.67 3.57
203 204 2.284150 CACACACAAGTTGTCCTACGTG 59.716 50.000 17.33 17.33 35.67 4.49
204 205 1.864711 CACACAAGTTGTCCTACGTGG 59.135 52.381 5.27 0.00 35.67 4.94
205 206 0.865769 CACAAGTTGTCCTACGTGGC 59.134 55.000 5.27 0.00 32.74 5.01
206 207 0.466543 ACAAGTTGTCCTACGTGGCA 59.533 50.000 1.64 0.00 32.74 4.92
207 208 0.865769 CAAGTTGTCCTACGTGGCAC 59.134 55.000 7.79 7.79 35.26 5.01
208 209 0.466543 AAGTTGTCCTACGTGGCACA 59.533 50.000 19.09 0.00 35.26 4.57
220 221 3.130264 TGGCACACAAAATCAGCCT 57.870 47.368 0.00 0.00 45.42 4.58
221 222 1.412079 TGGCACACAAAATCAGCCTT 58.588 45.000 0.00 0.00 45.42 4.35
222 223 1.761784 TGGCACACAAAATCAGCCTTT 59.238 42.857 0.00 0.00 45.42 3.11
223 224 2.170187 TGGCACACAAAATCAGCCTTTT 59.830 40.909 0.00 0.00 45.42 2.27
224 225 3.205338 GGCACACAAAATCAGCCTTTTT 58.795 40.909 0.00 0.00 42.01 1.94
225 226 4.141846 TGGCACACAAAATCAGCCTTTTTA 60.142 37.500 0.00 0.00 45.42 1.52
226 227 4.996758 GGCACACAAAATCAGCCTTTTTAT 59.003 37.500 0.00 0.00 42.01 1.40
227 228 5.106987 GGCACACAAAATCAGCCTTTTTATG 60.107 40.000 0.00 0.00 42.01 1.90
228 229 5.615325 GCACACAAAATCAGCCTTTTTATGC 60.615 40.000 0.00 0.00 0.00 3.14
229 230 4.996758 ACACAAAATCAGCCTTTTTATGCC 59.003 37.500 0.00 0.00 0.00 4.40
230 231 4.996122 CACAAAATCAGCCTTTTTATGCCA 59.004 37.500 0.00 0.00 0.00 4.92
231 232 5.469421 CACAAAATCAGCCTTTTTATGCCAA 59.531 36.000 0.00 0.00 0.00 4.52
232 233 5.702209 ACAAAATCAGCCTTTTTATGCCAAG 59.298 36.000 0.00 0.00 0.00 3.61
233 234 5.743636 AAATCAGCCTTTTTATGCCAAGA 57.256 34.783 0.00 0.00 0.00 3.02
234 235 5.945144 AATCAGCCTTTTTATGCCAAGAT 57.055 34.783 0.00 0.00 0.00 2.40
235 236 5.945144 ATCAGCCTTTTTATGCCAAGATT 57.055 34.783 0.00 0.00 0.00 2.40
236 237 5.329035 TCAGCCTTTTTATGCCAAGATTC 57.671 39.130 0.00 0.00 0.00 2.52
237 238 4.107622 CAGCCTTTTTATGCCAAGATTCG 58.892 43.478 0.00 0.00 0.00 3.34
238 239 3.763897 AGCCTTTTTATGCCAAGATTCGT 59.236 39.130 0.00 0.00 0.00 3.85
239 240 3.859386 GCCTTTTTATGCCAAGATTCGTG 59.141 43.478 0.00 0.00 0.00 4.35
240 241 3.859386 CCTTTTTATGCCAAGATTCGTGC 59.141 43.478 0.00 0.00 0.00 5.34
241 242 4.484236 CTTTTTATGCCAAGATTCGTGCA 58.516 39.130 0.00 0.00 38.23 4.57
242 243 4.511617 TTTTATGCCAAGATTCGTGCAA 57.488 36.364 0.00 0.00 37.27 4.08
243 244 4.511617 TTTATGCCAAGATTCGTGCAAA 57.488 36.364 0.00 0.00 37.27 3.68
244 245 4.511617 TTATGCCAAGATTCGTGCAAAA 57.488 36.364 0.00 0.00 37.27 2.44
245 246 2.420628 TGCCAAGATTCGTGCAAAAG 57.579 45.000 0.00 0.00 0.00 2.27
246 247 1.952990 TGCCAAGATTCGTGCAAAAGA 59.047 42.857 0.00 0.00 0.00 2.52
247 248 2.287547 TGCCAAGATTCGTGCAAAAGAC 60.288 45.455 0.00 0.00 0.00 3.01
248 249 2.574322 CCAAGATTCGTGCAAAAGACG 58.426 47.619 0.00 0.00 38.20 4.18
249 250 1.971962 CAAGATTCGTGCAAAAGACGC 59.028 47.619 0.00 0.00 36.75 5.19
250 251 1.512926 AGATTCGTGCAAAAGACGCT 58.487 45.000 0.00 0.00 36.75 5.07
251 252 1.195448 AGATTCGTGCAAAAGACGCTG 59.805 47.619 0.00 0.00 36.75 5.18
252 253 0.238289 ATTCGTGCAAAAGACGCTGG 59.762 50.000 0.00 0.00 36.75 4.85
253 254 0.812014 TTCGTGCAAAAGACGCTGGA 60.812 50.000 0.00 0.00 36.75 3.86
254 255 1.082756 CGTGCAAAAGACGCTGGAC 60.083 57.895 0.00 0.00 0.00 4.02
264 265 3.786101 CGCTGGACGGTGATGAAG 58.214 61.111 0.00 0.00 38.44 3.02
265 266 1.811266 CGCTGGACGGTGATGAAGG 60.811 63.158 0.00 0.00 38.44 3.46
266 267 1.296715 GCTGGACGGTGATGAAGGT 59.703 57.895 0.00 0.00 0.00 3.50
267 268 1.021390 GCTGGACGGTGATGAAGGTG 61.021 60.000 0.00 0.00 0.00 4.00
268 269 0.321671 CTGGACGGTGATGAAGGTGT 59.678 55.000 0.00 0.00 0.00 4.16
269 270 0.034756 TGGACGGTGATGAAGGTGTG 59.965 55.000 0.00 0.00 0.00 3.82
270 271 0.034896 GGACGGTGATGAAGGTGTGT 59.965 55.000 0.00 0.00 0.00 3.72
271 272 1.148310 GACGGTGATGAAGGTGTGTG 58.852 55.000 0.00 0.00 0.00 3.82
272 273 0.250295 ACGGTGATGAAGGTGTGTGG 60.250 55.000 0.00 0.00 0.00 4.17
273 274 0.034756 CGGTGATGAAGGTGTGTGGA 59.965 55.000 0.00 0.00 0.00 4.02
274 275 1.523758 GGTGATGAAGGTGTGTGGAC 58.476 55.000 0.00 0.00 0.00 4.02
275 276 1.148310 GTGATGAAGGTGTGTGGACG 58.852 55.000 0.00 0.00 0.00 4.79
276 277 1.044611 TGATGAAGGTGTGTGGACGA 58.955 50.000 0.00 0.00 0.00 4.20
277 278 1.000843 TGATGAAGGTGTGTGGACGAG 59.999 52.381 0.00 0.00 0.00 4.18
278 279 1.000955 GATGAAGGTGTGTGGACGAGT 59.999 52.381 0.00 0.00 0.00 4.18
279 280 0.828022 TGAAGGTGTGTGGACGAGTT 59.172 50.000 0.00 0.00 0.00 3.01
280 281 1.217882 GAAGGTGTGTGGACGAGTTG 58.782 55.000 0.00 0.00 0.00 3.16
281 282 0.179056 AAGGTGTGTGGACGAGTTGG 60.179 55.000 0.00 0.00 0.00 3.77
282 283 2.251642 GGTGTGTGGACGAGTTGGC 61.252 63.158 0.00 0.00 0.00 4.52
283 284 1.227556 GTGTGTGGACGAGTTGGCT 60.228 57.895 0.00 0.00 0.00 4.75
284 285 0.032952 GTGTGTGGACGAGTTGGCTA 59.967 55.000 0.00 0.00 0.00 3.93
285 286 0.753867 TGTGTGGACGAGTTGGCTAA 59.246 50.000 0.00 0.00 0.00 3.09
286 287 1.145803 GTGTGGACGAGTTGGCTAAC 58.854 55.000 4.51 4.51 37.06 2.34
287 288 0.319211 TGTGGACGAGTTGGCTAACG 60.319 55.000 7.35 0.00 41.71 3.18
288 289 1.373748 TGGACGAGTTGGCTAACGC 60.374 57.895 7.35 6.97 41.71 4.84
307 308 3.720531 CACACGTGTGGGCGTTAA 58.279 55.556 35.65 0.00 43.83 2.01
308 309 1.277440 CACACGTGTGGGCGTTAAC 59.723 57.895 35.65 0.00 43.83 2.01
309 310 1.153409 ACACGTGTGGGCGTTAACA 60.153 52.632 22.71 0.00 43.83 2.41
310 311 0.533308 ACACGTGTGGGCGTTAACAT 60.533 50.000 22.71 0.00 43.83 2.71
311 312 0.589223 CACGTGTGGGCGTTAACATT 59.411 50.000 7.58 0.00 43.83 2.71
312 313 1.002251 CACGTGTGGGCGTTAACATTT 60.002 47.619 7.58 0.00 43.83 2.32
313 314 1.264826 ACGTGTGGGCGTTAACATTTC 59.735 47.619 6.39 0.00 43.04 2.17
314 315 1.400500 CGTGTGGGCGTTAACATTTCC 60.400 52.381 6.39 1.91 0.00 3.13
315 316 0.875728 TGTGGGCGTTAACATTTCCG 59.124 50.000 6.39 0.00 0.00 4.30
316 317 1.158434 GTGGGCGTTAACATTTCCGA 58.842 50.000 6.39 0.00 0.00 4.55
317 318 1.536331 GTGGGCGTTAACATTTCCGAA 59.464 47.619 6.39 0.00 0.00 4.30
318 319 2.030981 GTGGGCGTTAACATTTCCGAAA 60.031 45.455 6.39 0.00 0.00 3.46
319 320 2.621998 TGGGCGTTAACATTTCCGAAAA 59.378 40.909 6.39 0.00 0.00 2.29
320 321 3.067742 TGGGCGTTAACATTTCCGAAAAA 59.932 39.130 6.39 0.00 0.00 1.94
321 322 4.239304 GGGCGTTAACATTTCCGAAAAAT 58.761 39.130 6.39 0.00 0.00 1.82
322 323 5.048224 TGGGCGTTAACATTTCCGAAAAATA 60.048 36.000 6.39 0.00 0.00 1.40
323 324 5.862860 GGGCGTTAACATTTCCGAAAAATAA 59.137 36.000 6.39 0.00 0.00 1.40
324 325 6.532302 GGGCGTTAACATTTCCGAAAAATAAT 59.468 34.615 6.39 0.00 0.00 1.28
334 335 2.177016 CCGAAAAATAATCCCTCCCCCT 59.823 50.000 0.00 0.00 0.00 4.79
338 339 0.271005 AATAATCCCTCCCCCTCGGT 59.729 55.000 0.00 0.00 0.00 4.69
554 564 2.680352 ACCCGTCATCGCCTCACT 60.680 61.111 0.00 0.00 35.54 3.41
562 572 1.681327 ATCGCCTCACTACACCCGT 60.681 57.895 0.00 0.00 0.00 5.28
625 653 3.531207 GGCGACCGGTACTACCCC 61.531 72.222 7.34 0.00 33.75 4.95
694 733 3.456277 TCCCCTCATAAGAAGAAGCTTCC 59.544 47.826 22.81 8.70 0.00 3.46
695 734 3.457749 CCCCTCATAAGAAGAAGCTTCCT 59.542 47.826 22.81 10.48 0.00 3.36
696 735 4.444164 CCCCTCATAAGAAGAAGCTTCCTC 60.444 50.000 22.81 19.23 0.00 3.71
697 736 4.367450 CCTCATAAGAAGAAGCTTCCTCG 58.633 47.826 22.81 7.05 0.00 4.63
698 737 4.142049 CCTCATAAGAAGAAGCTTCCTCGT 60.142 45.833 22.81 19.10 0.00 4.18
699 738 5.000012 TCATAAGAAGAAGCTTCCTCGTC 58.000 43.478 22.81 14.47 0.00 4.20
700 739 2.355717 AAGAAGAAGCTTCCTCGTCG 57.644 50.000 22.81 0.00 0.00 5.12
701 740 1.249407 AGAAGAAGCTTCCTCGTCGT 58.751 50.000 22.81 0.78 0.00 4.34
702 741 1.200484 AGAAGAAGCTTCCTCGTCGTC 59.800 52.381 22.81 5.78 0.00 4.20
703 742 1.200484 GAAGAAGCTTCCTCGTCGTCT 59.800 52.381 22.81 0.00 0.00 4.18
704 743 0.806241 AGAAGCTTCCTCGTCGTCTC 59.194 55.000 22.81 0.00 0.00 3.36
705 744 0.179158 GAAGCTTCCTCGTCGTCTCC 60.179 60.000 15.97 0.00 0.00 3.71
706 745 1.596895 AAGCTTCCTCGTCGTCTCCC 61.597 60.000 0.00 0.00 0.00 4.30
707 746 3.066233 GCTTCCTCGTCGTCTCCCC 62.066 68.421 0.00 0.00 0.00 4.81
708 747 2.362120 TTCCTCGTCGTCTCCCCC 60.362 66.667 0.00 0.00 0.00 5.40
709 748 2.840467 CTTCCTCGTCGTCTCCCCCT 62.840 65.000 0.00 0.00 0.00 4.79
710 749 2.829458 CCTCGTCGTCTCCCCCTC 60.829 72.222 0.00 0.00 0.00 4.30
711 750 2.829458 CTCGTCGTCTCCCCCTCC 60.829 72.222 0.00 0.00 0.00 4.30
712 751 4.437587 TCGTCGTCTCCCCCTCCC 62.438 72.222 0.00 0.00 0.00 4.30
716 755 4.862823 CGTCTCCCCCTCCCCCTC 62.863 77.778 0.00 0.00 0.00 4.30
717 756 4.500826 GTCTCCCCCTCCCCCTCC 62.501 77.778 0.00 0.00 0.00 4.30
718 757 4.761304 TCTCCCCCTCCCCCTCCT 62.761 72.222 0.00 0.00 0.00 3.69
732 1085 1.551452 CCTCCTCTTCTCCGTCAACT 58.449 55.000 0.00 0.00 0.00 3.16
742 1095 4.079980 TCTCCGTCAACTGAAAAATCCA 57.920 40.909 0.00 0.00 0.00 3.41
748 1101 2.962421 TCAACTGAAAAATCCACCCCAC 59.038 45.455 0.00 0.00 0.00 4.61
760 1113 0.909610 CACCCCACCTTGAGGAGCTA 60.910 60.000 3.59 0.00 38.94 3.32
785 1138 3.278157 GCTGGGCTAAGCAACCAC 58.722 61.111 7.68 0.00 43.01 4.16
786 1139 1.603455 GCTGGGCTAAGCAACCACA 60.603 57.895 7.68 0.00 43.01 4.17
787 1140 1.589716 GCTGGGCTAAGCAACCACAG 61.590 60.000 7.68 0.00 43.01 3.66
843 1206 6.038603 CAGAAATCAAGAGGTTCACTTGTTGA 59.961 38.462 4.43 4.43 43.30 3.18
895 1258 2.123854 CGGAGTCGGATCCCCTGA 60.124 66.667 6.06 0.00 35.82 3.86
896 1259 1.756950 CGGAGTCGGATCCCCTGAA 60.757 63.158 6.06 0.00 35.82 3.02
898 1261 0.909623 GGAGTCGGATCCCCTGAAAA 59.090 55.000 6.06 0.00 32.79 2.29
905 1270 2.103263 CGGATCCCCTGAAAAGTCTAGG 59.897 54.545 6.06 0.00 0.00 3.02
910 1275 3.178865 CCCCTGAAAAGTCTAGGTGGTA 58.821 50.000 0.00 0.00 0.00 3.25
921 1286 2.509931 TAGGTGGTAGCTGCGGAGGT 62.510 60.000 14.51 14.51 0.00 3.85
1209 1579 2.290896 GGAAGTGGACATGGACATGGAA 60.291 50.000 15.94 0.00 42.91 3.53
1257 1627 3.771110 GATGCAGCTGGAGGAGGCC 62.771 68.421 17.12 0.00 0.00 5.19
1533 1903 8.034215 ACCTATTTTGATTTGATTGATCGCAAA 58.966 29.630 9.63 9.63 37.59 3.68
1567 1937 4.706842 TTGCCCAAATCTCCTATACTCC 57.293 45.455 0.00 0.00 0.00 3.85
1637 2007 2.118313 TCAGTCCATTGTGCAGGATG 57.882 50.000 0.00 0.00 36.11 3.51
1710 3185 3.889815 TGTATCTTGGCCCAGAAATCAG 58.110 45.455 11.13 0.00 0.00 2.90
1711 3186 3.523157 TGTATCTTGGCCCAGAAATCAGA 59.477 43.478 11.13 0.00 0.00 3.27
1772 3247 3.809832 CGGGTCAATTGCTAACCTATCAG 59.190 47.826 12.98 0.12 33.42 2.90
1796 3271 6.779539 AGACTTCCATGGTCTGAAATTTCTTT 59.220 34.615 18.64 0.00 41.76 2.52
1802 3277 7.069826 TCCATGGTCTGAAATTTCTTTTGTTCT 59.930 33.333 18.64 0.00 0.00 3.01
1813 3288 9.503427 AAATTTCTTTTGTTCTCTACTTGAACG 57.497 29.630 0.00 0.00 44.67 3.95
1877 3352 7.609760 TGGTATTTGCTTGTCATTGTAGTAG 57.390 36.000 0.00 0.00 0.00 2.57
1988 3463 2.649816 ACTTGTGCTAGGGGAAAAGGAT 59.350 45.455 0.00 0.00 33.18 3.24
2004 3479 8.138074 GGGAAAAGGATTCTAGAAATTACATGC 58.862 37.037 9.71 0.00 0.00 4.06
2043 3518 3.311966 GAAAGTTCATGGCAGCACTTTC 58.688 45.455 22.68 22.68 44.66 2.62
2045 3520 3.423539 AGTTCATGGCAGCACTTTCTA 57.576 42.857 0.00 0.00 0.00 2.10
2063 3538 4.471904 TCTACCTGTTAGGATGCACAAG 57.528 45.455 1.13 0.00 37.67 3.16
2064 3539 2.496899 ACCTGTTAGGATGCACAAGG 57.503 50.000 1.13 0.00 37.67 3.61
2066 3541 2.608863 CCTGTTAGGATGCACAAGGCG 61.609 57.143 0.00 0.00 41.59 5.52
2131 3607 5.409520 TCAGTTGCTATATTTGATCCATCGC 59.590 40.000 0.00 0.00 0.00 4.58
2142 3618 0.249120 ATCCATCGCGTTCAAGTGGA 59.751 50.000 5.77 11.66 42.62 4.02
2224 3700 4.058124 TGAAACTCACGTTCCAGAGATTG 58.942 43.478 7.55 0.00 35.83 2.67
2498 3976 3.129462 TCTCTCCTTCTCTTGTACATGCG 59.871 47.826 0.00 0.00 0.00 4.73
2500 3978 3.258372 TCTCCTTCTCTTGTACATGCGTT 59.742 43.478 0.00 0.00 0.00 4.84
2540 4018 8.207545 TGGATAACTTGGCTAAAAACAATGTTT 58.792 29.630 5.41 5.41 0.00 2.83
2726 4204 0.822121 GGTCAAGGAACACCACCACC 60.822 60.000 0.00 0.00 32.33 4.61
2806 4284 2.787473 TCAGATGCCGAAGAACCATT 57.213 45.000 0.00 0.00 0.00 3.16
2816 4294 4.096984 GCCGAAGAACCATTGAAATCATCT 59.903 41.667 0.00 0.00 0.00 2.90
2932 4410 3.918294 TCCTACCGGTTTTATTCCTGG 57.082 47.619 15.04 1.78 0.00 4.45
2962 4440 8.394877 TCATTTTAAATCTATTACCTGCACACG 58.605 33.333 0.00 0.00 0.00 4.49
3091 4571 4.741676 CGGCTTTGCATCTGGAAATAATTC 59.258 41.667 0.00 0.00 34.90 2.17
3483 5345 8.330466 TCTTTATTCCATTTTTAGCGACTTCA 57.670 30.769 0.00 0.00 0.00 3.02
3693 5555 1.067295 AGATGGGTGCTTCCTTCACA 58.933 50.000 11.95 0.00 36.22 3.58
3717 5579 2.760634 TTCGGATAGAACTGCAGCAA 57.239 45.000 15.27 0.00 33.14 3.91
3920 5784 3.159213 TGTGCCATCCTCTTCATTGTT 57.841 42.857 0.00 0.00 0.00 2.83
4162 6030 1.145803 GTGAGAACGGTAACTGGCAC 58.854 55.000 0.00 0.00 0.00 5.01
4167 6035 1.833787 AACGGTAACTGGCACGGGAT 61.834 55.000 0.00 0.00 40.47 3.85
4171 6039 1.612199 GGTAACTGGCACGGGATTTCA 60.612 52.381 0.00 0.00 40.47 2.69
4316 7848 1.397390 AACTACCCTGGGCGATACGG 61.397 60.000 14.08 0.00 0.00 4.02
4391 7924 5.656416 ACAGGAAACAACTTGGAAATCAGAA 59.344 36.000 0.00 0.00 0.00 3.02
4404 7937 7.214467 TGGAAATCAGAAAAACCAGTGATAC 57.786 36.000 0.00 0.00 0.00 2.24
4488 8031 3.129262 TGTGGGAGGTTGATAGGATCA 57.871 47.619 0.00 0.00 37.55 2.92
4541 8085 6.096987 ACATCATCTGTAGAGGAACGTGTTAT 59.903 38.462 0.00 0.00 38.42 1.89
4550 8094 4.518970 AGAGGAACGTGTTATGCAACAAAT 59.481 37.500 0.00 0.00 45.99 2.32
4551 8095 5.009610 AGAGGAACGTGTTATGCAACAAATT 59.990 36.000 0.00 0.00 45.99 1.82
4552 8096 5.596845 AGGAACGTGTTATGCAACAAATTT 58.403 33.333 0.00 0.00 45.99 1.82
4553 8097 6.045955 AGGAACGTGTTATGCAACAAATTTT 58.954 32.000 0.00 0.00 45.99 1.82
4554 8098 6.536941 AGGAACGTGTTATGCAACAAATTTTT 59.463 30.769 0.00 0.00 45.99 1.94
4584 8128 5.508153 GCTACACGATCATACTCAGGAACAT 60.508 44.000 0.00 0.00 0.00 2.71
4588 8132 8.178313 ACACGATCATACTCAGGAACATTATA 57.822 34.615 0.00 0.00 0.00 0.98
4597 8141 5.012561 ACTCAGGAACATTATAGAGATGGCC 59.987 44.000 0.00 0.00 0.00 5.36
4615 8159 3.214328 GGCCGGTAATGATCAAACTCAT 58.786 45.455 1.90 0.00 37.47 2.90
4633 8177 3.617284 TCATCAACTAGCAGAGTACCGA 58.383 45.455 0.00 0.00 37.44 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.272991 GCTGTCATTTGCCATGTTTTTGAA 59.727 37.500 0.00 0.00 0.00 2.69
1 2 3.808726 GCTGTCATTTGCCATGTTTTTGA 59.191 39.130 0.00 0.00 0.00 2.69
2 3 3.810941 AGCTGTCATTTGCCATGTTTTTG 59.189 39.130 0.00 0.00 0.00 2.44
7 8 1.274167 CCAAGCTGTCATTTGCCATGT 59.726 47.619 0.00 0.00 0.00 3.21
8 9 1.404986 CCCAAGCTGTCATTTGCCATG 60.405 52.381 0.00 0.00 0.00 3.66
9 10 0.899720 CCCAAGCTGTCATTTGCCAT 59.100 50.000 0.00 0.00 0.00 4.40
10 11 0.469705 ACCCAAGCTGTCATTTGCCA 60.470 50.000 0.00 0.00 0.00 4.92
11 12 0.037975 CACCCAAGCTGTCATTTGCC 60.038 55.000 0.00 0.00 0.00 4.52
12 13 0.675633 ACACCCAAGCTGTCATTTGC 59.324 50.000 0.00 0.00 0.00 3.68
13 14 1.000060 CCACACCCAAGCTGTCATTTG 60.000 52.381 0.00 0.00 0.00 2.32
14 15 1.331214 CCACACCCAAGCTGTCATTT 58.669 50.000 0.00 0.00 0.00 2.32
15 16 0.540365 CCCACACCCAAGCTGTCATT 60.540 55.000 0.00 0.00 0.00 2.57
16 17 1.075482 CCCACACCCAAGCTGTCAT 59.925 57.895 0.00 0.00 0.00 3.06
17 18 2.055689 CTCCCACACCCAAGCTGTCA 62.056 60.000 0.00 0.00 0.00 3.58
18 19 1.302832 CTCCCACACCCAAGCTGTC 60.303 63.158 0.00 0.00 0.00 3.51
19 20 1.770110 TCTCCCACACCCAAGCTGT 60.770 57.895 0.00 0.00 0.00 4.40
20 21 1.002868 CTCTCCCACACCCAAGCTG 60.003 63.158 0.00 0.00 0.00 4.24
21 22 1.462238 ACTCTCCCACACCCAAGCT 60.462 57.895 0.00 0.00 0.00 3.74
22 23 1.302832 CACTCTCCCACACCCAAGC 60.303 63.158 0.00 0.00 0.00 4.01
23 24 1.376466 CCACTCTCCCACACCCAAG 59.624 63.158 0.00 0.00 0.00 3.61
24 25 2.153401 CCCACTCTCCCACACCCAA 61.153 63.158 0.00 0.00 0.00 4.12
25 26 2.529136 CCCACTCTCCCACACCCA 60.529 66.667 0.00 0.00 0.00 4.51
26 27 2.203938 TCCCACTCTCCCACACCC 60.204 66.667 0.00 0.00 0.00 4.61
27 28 0.836400 TTCTCCCACTCTCCCACACC 60.836 60.000 0.00 0.00 0.00 4.16
28 29 1.065854 CATTCTCCCACTCTCCCACAC 60.066 57.143 0.00 0.00 0.00 3.82
29 30 1.203300 TCATTCTCCCACTCTCCCACA 60.203 52.381 0.00 0.00 0.00 4.17
30 31 1.208293 GTCATTCTCCCACTCTCCCAC 59.792 57.143 0.00 0.00 0.00 4.61
31 32 1.203300 TGTCATTCTCCCACTCTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
32 33 1.484240 CTGTCATTCTCCCACTCTCCC 59.516 57.143 0.00 0.00 0.00 4.30
33 34 2.167487 GACTGTCATTCTCCCACTCTCC 59.833 54.545 2.24 0.00 0.00 3.71
34 35 2.159310 CGACTGTCATTCTCCCACTCTC 60.159 54.545 8.73 0.00 0.00 3.20
35 36 1.821753 CGACTGTCATTCTCCCACTCT 59.178 52.381 8.73 0.00 0.00 3.24
36 37 1.546476 ACGACTGTCATTCTCCCACTC 59.454 52.381 8.73 0.00 0.00 3.51
37 38 1.273606 CACGACTGTCATTCTCCCACT 59.726 52.381 8.73 0.00 0.00 4.00
38 39 1.673033 CCACGACTGTCATTCTCCCAC 60.673 57.143 8.73 0.00 0.00 4.61
39 40 0.608130 CCACGACTGTCATTCTCCCA 59.392 55.000 8.73 0.00 0.00 4.37
40 41 0.108138 CCCACGACTGTCATTCTCCC 60.108 60.000 8.73 0.00 0.00 4.30
41 42 0.895530 TCCCACGACTGTCATTCTCC 59.104 55.000 8.73 0.00 0.00 3.71
42 43 1.819288 TCTCCCACGACTGTCATTCTC 59.181 52.381 8.73 0.00 0.00 2.87
43 44 1.924731 TCTCCCACGACTGTCATTCT 58.075 50.000 8.73 0.00 0.00 2.40
44 45 2.544685 CATCTCCCACGACTGTCATTC 58.455 52.381 8.73 0.00 0.00 2.67
45 46 1.208052 CCATCTCCCACGACTGTCATT 59.792 52.381 8.73 0.00 0.00 2.57
46 47 0.826715 CCATCTCCCACGACTGTCAT 59.173 55.000 8.73 0.00 0.00 3.06
47 48 1.257750 CCCATCTCCCACGACTGTCA 61.258 60.000 8.73 0.00 0.00 3.58
48 49 1.517832 CCCATCTCCCACGACTGTC 59.482 63.158 0.00 0.00 0.00 3.51
49 50 1.990060 CCCCATCTCCCACGACTGT 60.990 63.158 0.00 0.00 0.00 3.55
50 51 1.264749 TTCCCCATCTCCCACGACTG 61.265 60.000 0.00 0.00 0.00 3.51
51 52 1.080354 TTCCCCATCTCCCACGACT 59.920 57.895 0.00 0.00 0.00 4.18
52 53 1.221021 GTTCCCCATCTCCCACGAC 59.779 63.158 0.00 0.00 0.00 4.34
53 54 1.229368 TGTTCCCCATCTCCCACGA 60.229 57.895 0.00 0.00 0.00 4.35
54 55 1.221840 CTGTTCCCCATCTCCCACG 59.778 63.158 0.00 0.00 0.00 4.94
55 56 0.914417 TCCTGTTCCCCATCTCCCAC 60.914 60.000 0.00 0.00 0.00 4.61
56 57 0.621571 CTCCTGTTCCCCATCTCCCA 60.622 60.000 0.00 0.00 0.00 4.37
57 58 0.621862 ACTCCTGTTCCCCATCTCCC 60.622 60.000 0.00 0.00 0.00 4.30
58 59 0.543749 CACTCCTGTTCCCCATCTCC 59.456 60.000 0.00 0.00 0.00 3.71
59 60 0.543749 CCACTCCTGTTCCCCATCTC 59.456 60.000 0.00 0.00 0.00 2.75
60 61 0.178861 ACCACTCCTGTTCCCCATCT 60.179 55.000 0.00 0.00 0.00 2.90
61 62 0.035056 CACCACTCCTGTTCCCCATC 60.035 60.000 0.00 0.00 0.00 3.51
62 63 2.078452 CACCACTCCTGTTCCCCAT 58.922 57.895 0.00 0.00 0.00 4.00
63 64 2.829384 GCACCACTCCTGTTCCCCA 61.829 63.158 0.00 0.00 0.00 4.96
64 65 2.034221 GCACCACTCCTGTTCCCC 59.966 66.667 0.00 0.00 0.00 4.81
65 66 2.358737 CGCACCACTCCTGTTCCC 60.359 66.667 0.00 0.00 0.00 3.97
66 67 1.961277 CACGCACCACTCCTGTTCC 60.961 63.158 0.00 0.00 0.00 3.62
67 68 1.961277 CCACGCACCACTCCTGTTC 60.961 63.158 0.00 0.00 0.00 3.18
68 69 2.111043 CCACGCACCACTCCTGTT 59.889 61.111 0.00 0.00 0.00 3.16
69 70 4.626081 GCCACGCACCACTCCTGT 62.626 66.667 0.00 0.00 0.00 4.00
93 94 3.088500 GATGGAACTGCTGTCGCGC 62.089 63.158 0.00 0.00 39.65 6.86
94 95 2.792290 CGATGGAACTGCTGTCGCG 61.792 63.158 0.00 0.00 39.65 5.87
95 96 3.084579 CGATGGAACTGCTGTCGC 58.915 61.111 0.00 0.00 0.00 5.19
96 97 1.737735 TGCGATGGAACTGCTGTCG 60.738 57.895 0.00 0.00 35.56 4.35
97 98 1.790387 GTGCGATGGAACTGCTGTC 59.210 57.895 0.00 0.00 0.00 3.51
98 99 2.029288 CGTGCGATGGAACTGCTGT 61.029 57.895 0.00 0.00 0.00 4.40
99 100 2.780643 CGTGCGATGGAACTGCTG 59.219 61.111 0.00 0.00 0.00 4.41
100 101 3.121030 GCGTGCGATGGAACTGCT 61.121 61.111 0.00 0.00 0.00 4.24
101 102 4.166011 GGCGTGCGATGGAACTGC 62.166 66.667 0.00 0.00 0.00 4.40
102 103 3.499737 GGGCGTGCGATGGAACTG 61.500 66.667 0.00 0.00 0.00 3.16
103 104 4.778143 GGGGCGTGCGATGGAACT 62.778 66.667 0.00 0.00 0.00 3.01
117 118 2.046314 AATGTTCGCCAGTCGGGG 60.046 61.111 0.00 0.00 46.62 5.73
118 119 2.398554 CCAATGTTCGCCAGTCGGG 61.399 63.158 0.00 0.00 39.05 5.14
119 120 3.039202 GCCAATGTTCGCCAGTCGG 62.039 63.158 0.00 0.00 39.05 4.79
120 121 2.034879 AGCCAATGTTCGCCAGTCG 61.035 57.895 0.00 0.00 40.15 4.18
121 122 1.503542 CAGCCAATGTTCGCCAGTC 59.496 57.895 0.00 0.00 0.00 3.51
122 123 2.629656 GCAGCCAATGTTCGCCAGT 61.630 57.895 0.00 0.00 0.00 4.00
123 124 2.180017 GCAGCCAATGTTCGCCAG 59.820 61.111 0.00 0.00 0.00 4.85
124 125 3.736100 CGCAGCCAATGTTCGCCA 61.736 61.111 0.00 0.00 0.00 5.69
125 126 4.481112 CCGCAGCCAATGTTCGCC 62.481 66.667 0.00 0.00 0.00 5.54
126 127 3.386867 CTCCGCAGCCAATGTTCGC 62.387 63.158 0.00 0.00 0.00 4.70
127 128 1.699656 CTCTCCGCAGCCAATGTTCG 61.700 60.000 0.00 0.00 0.00 3.95
128 129 0.391661 TCTCTCCGCAGCCAATGTTC 60.392 55.000 0.00 0.00 0.00 3.18
129 130 0.036732 TTCTCTCCGCAGCCAATGTT 59.963 50.000 0.00 0.00 0.00 2.71
130 131 0.036732 TTTCTCTCCGCAGCCAATGT 59.963 50.000 0.00 0.00 0.00 2.71
131 132 1.135575 GTTTTCTCTCCGCAGCCAATG 60.136 52.381 0.00 0.00 0.00 2.82
132 133 1.168714 GTTTTCTCTCCGCAGCCAAT 58.831 50.000 0.00 0.00 0.00 3.16
133 134 0.179032 TGTTTTCTCTCCGCAGCCAA 60.179 50.000 0.00 0.00 0.00 4.52
134 135 0.603707 CTGTTTTCTCTCCGCAGCCA 60.604 55.000 0.00 0.00 0.00 4.75
135 136 1.301677 CCTGTTTTCTCTCCGCAGCC 61.302 60.000 0.00 0.00 0.00 4.85
136 137 1.916697 GCCTGTTTTCTCTCCGCAGC 61.917 60.000 0.00 0.00 0.00 5.25
137 138 1.630244 CGCCTGTTTTCTCTCCGCAG 61.630 60.000 0.00 0.00 0.00 5.18
138 139 1.667830 CGCCTGTTTTCTCTCCGCA 60.668 57.895 0.00 0.00 0.00 5.69
139 140 1.668151 ACGCCTGTTTTCTCTCCGC 60.668 57.895 0.00 0.00 0.00 5.54
140 141 0.600255 ACACGCCTGTTTTCTCTCCG 60.600 55.000 0.00 0.00 0.00 4.63
141 142 0.868406 CACACGCCTGTTTTCTCTCC 59.132 55.000 0.00 0.00 0.00 3.71
142 143 0.868406 CCACACGCCTGTTTTCTCTC 59.132 55.000 0.00 0.00 0.00 3.20
143 144 0.535102 CCCACACGCCTGTTTTCTCT 60.535 55.000 0.00 0.00 0.00 3.10
144 145 1.949257 CCCACACGCCTGTTTTCTC 59.051 57.895 0.00 0.00 0.00 2.87
145 146 2.193536 GCCCACACGCCTGTTTTCT 61.194 57.895 0.00 0.00 0.00 2.52
146 147 2.335011 GCCCACACGCCTGTTTTC 59.665 61.111 0.00 0.00 0.00 2.29
147 148 3.591835 CGCCCACACGCCTGTTTT 61.592 61.111 0.00 0.00 0.00 2.43
148 149 4.555709 TCGCCCACACGCCTGTTT 62.556 61.111 0.00 0.00 0.00 2.83
149 150 4.555709 TTCGCCCACACGCCTGTT 62.556 61.111 0.00 0.00 0.00 3.16
151 152 4.988598 AGTTCGCCCACACGCCTG 62.989 66.667 0.00 0.00 0.00 4.85
152 153 4.681978 GAGTTCGCCCACACGCCT 62.682 66.667 0.00 0.00 0.00 5.52
162 163 3.134127 GCATGTGGGGGAGTTCGC 61.134 66.667 0.00 0.00 0.00 4.70
163 164 2.438434 GGCATGTGGGGGAGTTCG 60.438 66.667 0.00 0.00 0.00 3.95
164 165 1.678970 GTGGCATGTGGGGGAGTTC 60.679 63.158 0.00 0.00 0.00 3.01
165 166 2.440599 GTGGCATGTGGGGGAGTT 59.559 61.111 0.00 0.00 0.00 3.01
166 167 2.858476 TGTGGCATGTGGGGGAGT 60.858 61.111 0.00 0.00 0.00 3.85
167 168 2.361610 GTGTGGCATGTGGGGGAG 60.362 66.667 0.00 0.00 0.00 4.30
168 169 3.181530 TGTGTGGCATGTGGGGGA 61.182 61.111 0.00 0.00 0.00 4.81
169 170 2.990967 GTGTGTGGCATGTGGGGG 60.991 66.667 0.00 0.00 0.00 5.40
170 171 2.203466 TGTGTGTGGCATGTGGGG 60.203 61.111 0.00 0.00 0.00 4.96
171 172 1.390383 TTGTGTGTGTGGCATGTGGG 61.390 55.000 0.00 0.00 0.00 4.61
172 173 0.031043 CTTGTGTGTGTGGCATGTGG 59.969 55.000 0.00 0.00 0.00 4.17
173 174 0.740149 ACTTGTGTGTGTGGCATGTG 59.260 50.000 0.00 0.00 0.00 3.21
174 175 1.134753 CAACTTGTGTGTGTGGCATGT 59.865 47.619 0.00 0.00 0.00 3.21
175 176 1.134753 ACAACTTGTGTGTGTGGCATG 59.865 47.619 0.00 0.00 39.72 4.06
176 177 1.405105 GACAACTTGTGTGTGTGGCAT 59.595 47.619 0.00 0.00 41.96 4.40
177 178 0.808125 GACAACTTGTGTGTGTGGCA 59.192 50.000 0.00 0.00 41.96 4.92
178 179 0.100503 GGACAACTTGTGTGTGTGGC 59.899 55.000 0.00 0.00 41.96 5.01
179 180 1.750193 AGGACAACTTGTGTGTGTGG 58.250 50.000 0.00 0.00 41.96 4.17
180 181 2.284150 CGTAGGACAACTTGTGTGTGTG 59.716 50.000 0.00 0.00 41.96 3.82
181 182 2.093869 ACGTAGGACAACTTGTGTGTGT 60.094 45.455 0.00 0.00 41.96 3.72
182 183 2.284150 CACGTAGGACAACTTGTGTGTG 59.716 50.000 0.00 0.00 41.96 3.82
183 184 2.546778 CACGTAGGACAACTTGTGTGT 58.453 47.619 0.00 0.00 41.96 3.72
184 185 1.864711 CCACGTAGGACAACTTGTGTG 59.135 52.381 0.00 1.11 41.96 3.82
185 186 1.808891 GCCACGTAGGACAACTTGTGT 60.809 52.381 0.00 0.00 45.74 3.72
186 187 0.865769 GCCACGTAGGACAACTTGTG 59.134 55.000 0.00 0.00 41.22 3.33
187 188 0.466543 TGCCACGTAGGACAACTTGT 59.533 50.000 8.04 0.00 41.22 3.16
188 189 0.865769 GTGCCACGTAGGACAACTTG 59.134 55.000 0.00 0.00 41.22 3.16
189 190 0.466543 TGTGCCACGTAGGACAACTT 59.533 50.000 5.76 0.00 41.22 2.66
190 191 0.249741 GTGTGCCACGTAGGACAACT 60.250 55.000 10.20 0.00 41.22 3.16
191 192 0.531090 TGTGTGCCACGTAGGACAAC 60.531 55.000 10.20 5.70 41.22 3.32
192 193 0.178301 TTGTGTGCCACGTAGGACAA 59.822 50.000 10.20 7.57 41.22 3.18
193 194 0.178301 TTTGTGTGCCACGTAGGACA 59.822 50.000 3.90 3.90 41.22 4.02
194 195 1.301423 TTTTGTGTGCCACGTAGGAC 58.699 50.000 0.00 0.00 41.22 3.85
195 196 2.147958 GATTTTGTGTGCCACGTAGGA 58.852 47.619 8.04 0.00 41.22 2.94
196 197 1.876799 TGATTTTGTGTGCCACGTAGG 59.123 47.619 0.00 0.00 37.14 3.18
197 198 2.665519 GCTGATTTTGTGTGCCACGTAG 60.666 50.000 0.00 0.00 37.14 3.51
198 199 1.265635 GCTGATTTTGTGTGCCACGTA 59.734 47.619 0.00 0.00 37.14 3.57
199 200 0.030638 GCTGATTTTGTGTGCCACGT 59.969 50.000 0.00 0.00 37.14 4.49
200 201 0.664166 GGCTGATTTTGTGTGCCACG 60.664 55.000 0.00 0.00 42.79 4.94
201 202 0.675633 AGGCTGATTTTGTGTGCCAC 59.324 50.000 0.00 0.00 45.42 5.01
202 203 1.412079 AAGGCTGATTTTGTGTGCCA 58.588 45.000 0.00 0.00 45.42 4.92
203 204 2.531522 AAAGGCTGATTTTGTGTGCC 57.468 45.000 0.00 0.00 43.52 5.01
204 205 5.615325 GCATAAAAAGGCTGATTTTGTGTGC 60.615 40.000 17.09 14.25 39.55 4.57
205 206 5.106987 GGCATAAAAAGGCTGATTTTGTGTG 60.107 40.000 17.09 10.25 39.55 3.82
206 207 4.996758 GGCATAAAAAGGCTGATTTTGTGT 59.003 37.500 17.09 0.54 39.55 3.72
207 208 4.996122 TGGCATAAAAAGGCTGATTTTGTG 59.004 37.500 13.61 13.61 40.03 3.33
208 209 5.226194 TGGCATAAAAAGGCTGATTTTGT 57.774 34.783 7.08 0.00 32.81 2.83
209 210 5.933463 TCTTGGCATAAAAAGGCTGATTTTG 59.067 36.000 7.08 3.66 32.81 2.44
210 211 6.112927 TCTTGGCATAAAAAGGCTGATTTT 57.887 33.333 4.16 3.45 33.86 1.82
211 212 5.743636 TCTTGGCATAAAAAGGCTGATTT 57.256 34.783 0.00 0.00 0.00 2.17
212 213 5.945144 ATCTTGGCATAAAAAGGCTGATT 57.055 34.783 0.00 0.00 0.00 2.57
213 214 5.450965 CGAATCTTGGCATAAAAAGGCTGAT 60.451 40.000 0.00 0.00 0.00 2.90
214 215 4.142403 CGAATCTTGGCATAAAAAGGCTGA 60.142 41.667 0.00 0.00 0.00 4.26
215 216 4.107622 CGAATCTTGGCATAAAAAGGCTG 58.892 43.478 0.00 0.00 0.00 4.85
216 217 3.763897 ACGAATCTTGGCATAAAAAGGCT 59.236 39.130 0.00 0.00 0.00 4.58
217 218 3.859386 CACGAATCTTGGCATAAAAAGGC 59.141 43.478 0.00 0.00 0.00 4.35
218 219 3.859386 GCACGAATCTTGGCATAAAAAGG 59.141 43.478 0.00 0.00 0.00 3.11
219 220 4.484236 TGCACGAATCTTGGCATAAAAAG 58.516 39.130 0.00 0.00 0.00 2.27
220 221 4.511617 TGCACGAATCTTGGCATAAAAA 57.488 36.364 0.00 0.00 0.00 1.94
221 222 4.511617 TTGCACGAATCTTGGCATAAAA 57.488 36.364 0.00 0.00 35.98 1.52
222 223 4.511617 TTTGCACGAATCTTGGCATAAA 57.488 36.364 0.00 0.00 35.98 1.40
223 224 4.217334 TCTTTTGCACGAATCTTGGCATAA 59.783 37.500 0.00 0.00 35.98 1.90
224 225 3.755905 TCTTTTGCACGAATCTTGGCATA 59.244 39.130 0.00 0.00 35.98 3.14
225 226 2.557924 TCTTTTGCACGAATCTTGGCAT 59.442 40.909 0.00 0.00 35.98 4.40
226 227 1.952990 TCTTTTGCACGAATCTTGGCA 59.047 42.857 0.00 0.00 0.00 4.92
227 228 2.319472 GTCTTTTGCACGAATCTTGGC 58.681 47.619 0.00 0.00 0.00 4.52
228 229 2.574322 CGTCTTTTGCACGAATCTTGG 58.426 47.619 0.00 0.00 39.75 3.61
229 230 1.971962 GCGTCTTTTGCACGAATCTTG 59.028 47.619 0.00 0.00 39.75 3.02
230 231 1.873591 AGCGTCTTTTGCACGAATCTT 59.126 42.857 0.00 0.00 39.75 2.40
231 232 1.195448 CAGCGTCTTTTGCACGAATCT 59.805 47.619 0.00 0.00 39.75 2.40
232 233 1.595609 CAGCGTCTTTTGCACGAATC 58.404 50.000 0.00 0.00 39.75 2.52
233 234 0.238289 CCAGCGTCTTTTGCACGAAT 59.762 50.000 0.00 0.00 39.75 3.34
234 235 0.812014 TCCAGCGTCTTTTGCACGAA 60.812 50.000 0.00 0.00 39.75 3.85
235 236 1.227409 TCCAGCGTCTTTTGCACGA 60.227 52.632 0.00 0.00 39.75 4.35
236 237 1.082756 GTCCAGCGTCTTTTGCACG 60.083 57.895 0.00 0.00 40.35 5.34
237 238 1.082756 CGTCCAGCGTCTTTTGCAC 60.083 57.895 0.00 0.00 35.54 4.57
238 239 2.250939 CCGTCCAGCGTCTTTTGCA 61.251 57.895 0.00 0.00 39.32 4.08
239 240 2.251642 ACCGTCCAGCGTCTTTTGC 61.252 57.895 0.00 0.00 39.32 3.68
240 241 0.878523 TCACCGTCCAGCGTCTTTTG 60.879 55.000 0.00 0.00 39.32 2.44
241 242 0.034896 ATCACCGTCCAGCGTCTTTT 59.965 50.000 0.00 0.00 39.32 2.27
242 243 0.670546 CATCACCGTCCAGCGTCTTT 60.671 55.000 0.00 0.00 39.32 2.52
243 244 1.079819 CATCACCGTCCAGCGTCTT 60.080 57.895 0.00 0.00 39.32 3.01
244 245 1.532604 TTCATCACCGTCCAGCGTCT 61.533 55.000 0.00 0.00 39.32 4.18
245 246 1.078759 CTTCATCACCGTCCAGCGTC 61.079 60.000 0.00 0.00 39.32 5.19
246 247 1.079819 CTTCATCACCGTCCAGCGT 60.080 57.895 0.00 0.00 39.32 5.07
247 248 1.811266 CCTTCATCACCGTCCAGCG 60.811 63.158 0.00 0.00 40.95 5.18
248 249 1.021390 CACCTTCATCACCGTCCAGC 61.021 60.000 0.00 0.00 0.00 4.85
249 250 0.321671 ACACCTTCATCACCGTCCAG 59.678 55.000 0.00 0.00 0.00 3.86
250 251 0.034756 CACACCTTCATCACCGTCCA 59.965 55.000 0.00 0.00 0.00 4.02
251 252 0.034896 ACACACCTTCATCACCGTCC 59.965 55.000 0.00 0.00 0.00 4.79
252 253 1.148310 CACACACCTTCATCACCGTC 58.852 55.000 0.00 0.00 0.00 4.79
253 254 0.250295 CCACACACCTTCATCACCGT 60.250 55.000 0.00 0.00 0.00 4.83
254 255 0.034756 TCCACACACCTTCATCACCG 59.965 55.000 0.00 0.00 0.00 4.94
255 256 1.523758 GTCCACACACCTTCATCACC 58.476 55.000 0.00 0.00 0.00 4.02
256 257 1.148310 CGTCCACACACCTTCATCAC 58.852 55.000 0.00 0.00 0.00 3.06
257 258 1.000843 CTCGTCCACACACCTTCATCA 59.999 52.381 0.00 0.00 0.00 3.07
258 259 1.000955 ACTCGTCCACACACCTTCATC 59.999 52.381 0.00 0.00 0.00 2.92
259 260 1.048601 ACTCGTCCACACACCTTCAT 58.951 50.000 0.00 0.00 0.00 2.57
260 261 0.828022 AACTCGTCCACACACCTTCA 59.172 50.000 0.00 0.00 0.00 3.02
261 262 1.217882 CAACTCGTCCACACACCTTC 58.782 55.000 0.00 0.00 0.00 3.46
262 263 0.179056 CCAACTCGTCCACACACCTT 60.179 55.000 0.00 0.00 0.00 3.50
263 264 1.445942 CCAACTCGTCCACACACCT 59.554 57.895 0.00 0.00 0.00 4.00
264 265 2.251642 GCCAACTCGTCCACACACC 61.252 63.158 0.00 0.00 0.00 4.16
265 266 0.032952 TAGCCAACTCGTCCACACAC 59.967 55.000 0.00 0.00 0.00 3.82
266 267 0.753867 TTAGCCAACTCGTCCACACA 59.246 50.000 0.00 0.00 0.00 3.72
267 268 1.145803 GTTAGCCAACTCGTCCACAC 58.854 55.000 0.00 0.00 0.00 3.82
268 269 0.319211 CGTTAGCCAACTCGTCCACA 60.319 55.000 0.00 0.00 32.09 4.17
269 270 1.623973 GCGTTAGCCAACTCGTCCAC 61.624 60.000 0.00 0.00 37.42 4.02
270 271 1.373748 GCGTTAGCCAACTCGTCCA 60.374 57.895 0.00 0.00 37.42 4.02
271 272 3.471399 GCGTTAGCCAACTCGTCC 58.529 61.111 0.00 0.00 37.42 4.79
281 282 2.663852 ACACGTGTGGGCGTTAGC 60.664 61.111 22.71 0.00 43.83 3.09
282 283 3.240203 CACACGTGTGGGCGTTAG 58.760 61.111 35.65 12.08 43.83 2.34
294 295 1.400500 GGAAATGTTAACGCCCACACG 60.400 52.381 0.26 0.00 39.50 4.49
295 296 1.400500 CGGAAATGTTAACGCCCACAC 60.400 52.381 0.26 0.00 0.00 3.82
296 297 0.875728 CGGAAATGTTAACGCCCACA 59.124 50.000 0.26 0.00 0.00 4.17
297 298 1.158434 TCGGAAATGTTAACGCCCAC 58.842 50.000 0.26 0.00 0.00 4.61
298 299 1.893544 TTCGGAAATGTTAACGCCCA 58.106 45.000 0.26 0.00 0.00 5.36
299 300 2.993449 TTTCGGAAATGTTAACGCCC 57.007 45.000 0.00 0.00 0.00 6.13
300 301 6.931243 TTATTTTTCGGAAATGTTAACGCC 57.069 33.333 3.67 0.00 0.00 5.68
301 302 7.253850 GGGATTATTTTTCGGAAATGTTAACGC 60.254 37.037 3.67 1.39 0.00 4.84
302 303 7.971722 AGGGATTATTTTTCGGAAATGTTAACG 59.028 33.333 3.67 0.00 0.00 3.18
303 304 9.297586 GAGGGATTATTTTTCGGAAATGTTAAC 57.702 33.333 3.67 0.00 0.00 2.01
304 305 8.471609 GGAGGGATTATTTTTCGGAAATGTTAA 58.528 33.333 3.67 3.91 0.00 2.01
305 306 7.068962 GGGAGGGATTATTTTTCGGAAATGTTA 59.931 37.037 3.67 0.00 0.00 2.41
306 307 6.127168 GGGAGGGATTATTTTTCGGAAATGTT 60.127 38.462 3.67 0.00 0.00 2.71
307 308 5.362717 GGGAGGGATTATTTTTCGGAAATGT 59.637 40.000 3.67 0.00 0.00 2.71
308 309 5.221441 GGGGAGGGATTATTTTTCGGAAATG 60.221 44.000 3.67 0.00 0.00 2.32
309 310 4.899457 GGGGAGGGATTATTTTTCGGAAAT 59.101 41.667 3.67 0.00 0.00 2.17
310 311 4.283337 GGGGAGGGATTATTTTTCGGAAA 58.717 43.478 0.00 0.00 0.00 3.13
311 312 3.373329 GGGGGAGGGATTATTTTTCGGAA 60.373 47.826 0.00 0.00 0.00 4.30
312 313 2.176148 GGGGGAGGGATTATTTTTCGGA 59.824 50.000 0.00 0.00 0.00 4.55
313 314 2.177016 AGGGGGAGGGATTATTTTTCGG 59.823 50.000 0.00 0.00 0.00 4.30
314 315 3.487372 GAGGGGGAGGGATTATTTTTCG 58.513 50.000 0.00 0.00 0.00 3.46
315 316 3.487372 CGAGGGGGAGGGATTATTTTTC 58.513 50.000 0.00 0.00 0.00 2.29
316 317 2.177016 CCGAGGGGGAGGGATTATTTTT 59.823 50.000 0.00 0.00 38.47 1.94
317 318 1.780919 CCGAGGGGGAGGGATTATTTT 59.219 52.381 0.00 0.00 38.47 1.82
318 319 1.346151 ACCGAGGGGGAGGGATTATTT 60.346 52.381 0.00 0.00 39.97 1.40
319 320 0.271005 ACCGAGGGGGAGGGATTATT 59.729 55.000 0.00 0.00 39.97 1.40
320 321 0.271005 AACCGAGGGGGAGGGATTAT 59.729 55.000 0.00 0.00 39.97 1.28
321 322 0.399519 GAACCGAGGGGGAGGGATTA 60.400 60.000 0.00 0.00 39.97 1.75
322 323 1.693103 GAACCGAGGGGGAGGGATT 60.693 63.158 0.00 0.00 39.97 3.01
323 324 2.040779 GAACCGAGGGGGAGGGAT 60.041 66.667 0.00 0.00 39.97 3.85
324 325 4.410033 GGAACCGAGGGGGAGGGA 62.410 72.222 0.00 0.00 39.97 4.20
338 339 2.758207 TTGGTTGCGGAGGGTGGAA 61.758 57.895 0.00 0.00 0.00 3.53
375 376 1.904537 GGGTAAAAGAGAGAACGGGGA 59.095 52.381 0.00 0.00 0.00 4.81
694 733 2.829458 GGAGGGGGAGACGACGAG 60.829 72.222 0.00 0.00 0.00 4.18
695 734 4.437587 GGGAGGGGGAGACGACGA 62.438 72.222 0.00 0.00 0.00 4.20
699 738 4.862823 GAGGGGGAGGGGGAGACG 62.863 77.778 0.00 0.00 0.00 4.18
700 739 4.500826 GGAGGGGGAGGGGGAGAC 62.501 77.778 0.00 0.00 0.00 3.36
701 740 4.761304 AGGAGGGGGAGGGGGAGA 62.761 72.222 0.00 0.00 0.00 3.71
702 741 4.179599 GAGGAGGGGGAGGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
703 742 4.761304 AGAGGAGGGGGAGGGGGA 62.761 72.222 0.00 0.00 0.00 4.81
704 743 3.711782 AAGAGGAGGGGGAGGGGG 61.712 72.222 0.00 0.00 0.00 5.40
705 744 2.040359 GAAGAGGAGGGGGAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
706 745 1.074850 GAGAAGAGGAGGGGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
707 746 1.074850 GGAGAAGAGGAGGGGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
708 747 1.456705 CGGAGAAGAGGAGGGGGAG 60.457 68.421 0.00 0.00 0.00 4.30
709 748 2.226149 GACGGAGAAGAGGAGGGGGA 62.226 65.000 0.00 0.00 0.00 4.81
710 749 1.758906 GACGGAGAAGAGGAGGGGG 60.759 68.421 0.00 0.00 0.00 5.40
711 750 0.614979 TTGACGGAGAAGAGGAGGGG 60.615 60.000 0.00 0.00 0.00 4.79
712 751 0.533032 GTTGACGGAGAAGAGGAGGG 59.467 60.000 0.00 0.00 0.00 4.30
713 752 1.203523 CAGTTGACGGAGAAGAGGAGG 59.796 57.143 0.00 0.00 0.00 4.30
714 753 2.163509 TCAGTTGACGGAGAAGAGGAG 58.836 52.381 0.00 0.00 0.00 3.69
715 754 2.287977 TCAGTTGACGGAGAAGAGGA 57.712 50.000 0.00 0.00 0.00 3.71
716 755 3.386768 TTTCAGTTGACGGAGAAGAGG 57.613 47.619 0.00 0.00 0.00 3.69
717 756 5.106908 GGATTTTTCAGTTGACGGAGAAGAG 60.107 44.000 0.00 0.00 0.00 2.85
718 757 4.755123 GGATTTTTCAGTTGACGGAGAAGA 59.245 41.667 0.00 0.00 0.00 2.87
732 1085 2.091055 TCAAGGTGGGGTGGATTTTTCA 60.091 45.455 0.00 0.00 0.00 2.69
742 1095 0.618968 CTAGCTCCTCAAGGTGGGGT 60.619 60.000 0.00 0.00 39.64 4.95
748 1101 1.480137 CAGTGACCTAGCTCCTCAAGG 59.520 57.143 0.00 0.00 36.42 3.61
760 1113 1.986413 CTTAGCCCAGCAGTGACCT 59.014 57.895 0.00 0.00 0.00 3.85
783 1136 1.304052 TTTGGGGGATTCGCCTGTG 60.304 57.895 18.23 0.00 45.28 3.66
784 1137 1.000896 CTTTGGGGGATTCGCCTGT 60.001 57.895 18.23 0.00 45.28 4.00
785 1138 0.323360 TTCTTTGGGGGATTCGCCTG 60.323 55.000 18.23 7.69 45.28 4.85
786 1139 0.407918 TTTCTTTGGGGGATTCGCCT 59.592 50.000 18.23 0.00 45.28 5.52
787 1140 1.262417 TTTTCTTTGGGGGATTCGCC 58.738 50.000 11.21 11.21 45.27 5.54
843 1206 0.241481 GAACTCCGACAGCGAGAACT 59.759 55.000 0.00 0.00 40.82 3.01
872 1235 2.194889 GGATCCGACTCCGTCTCCC 61.195 68.421 0.00 0.00 31.90 4.30
886 1249 3.118223 CCACCTAGACTTTTCAGGGGATC 60.118 52.174 0.00 0.00 34.56 3.36
888 1251 2.266279 CCACCTAGACTTTTCAGGGGA 58.734 52.381 0.00 0.00 34.56 4.81
889 1252 1.985895 ACCACCTAGACTTTTCAGGGG 59.014 52.381 0.00 0.00 33.48 4.79
891 1254 3.515901 AGCTACCACCTAGACTTTTCAGG 59.484 47.826 0.00 0.00 35.45 3.86
892 1255 4.499183 CAGCTACCACCTAGACTTTTCAG 58.501 47.826 0.00 0.00 0.00 3.02
893 1256 3.306780 GCAGCTACCACCTAGACTTTTCA 60.307 47.826 0.00 0.00 0.00 2.69
895 1258 2.353803 CGCAGCTACCACCTAGACTTTT 60.354 50.000 0.00 0.00 0.00 2.27
896 1259 1.204941 CGCAGCTACCACCTAGACTTT 59.795 52.381 0.00 0.00 0.00 2.66
898 1261 1.038130 CCGCAGCTACCACCTAGACT 61.038 60.000 0.00 0.00 0.00 3.24
905 1270 2.125512 CACCTCCGCAGCTACCAC 60.126 66.667 0.00 0.00 0.00 4.16
944 1309 0.098905 TGCTAGACGCGCTTACTGAG 59.901 55.000 5.73 0.00 43.27 3.35
946 1311 2.279469 GTGCTAGACGCGCTTACTG 58.721 57.895 5.73 0.00 45.56 2.74
1146 1516 1.100510 CTGCATCCAGTCCAACATGG 58.899 55.000 0.00 0.00 39.43 3.66
1209 1579 1.753463 GTCCATCTCCCCGTCGTCT 60.753 63.158 0.00 0.00 0.00 4.18
1257 1627 4.899239 GCGACCTCCGGCCATCTG 62.899 72.222 2.24 0.00 39.04 2.90
1533 1903 0.037590 TGGGCAAAACCATAGCGAGT 59.962 50.000 0.00 0.00 42.05 4.18
1637 2007 2.893489 CAAGCCCTAAATCCATAAGCCC 59.107 50.000 0.00 0.00 0.00 5.19
1710 3185 6.541111 AAATCTACAAACGAGTGAACCTTC 57.459 37.500 0.00 0.00 0.00 3.46
1711 3186 6.147328 GCTAAATCTACAAACGAGTGAACCTT 59.853 38.462 0.00 0.00 0.00 3.50
1772 3247 6.581171 AAGAAATTTCAGACCATGGAAGTC 57.419 37.500 21.47 5.63 26.83 3.01
1796 3271 5.047847 CCTTCACGTTCAAGTAGAGAACAA 58.952 41.667 6.83 0.00 44.22 2.83
1802 3277 5.068636 AGTAGACCTTCACGTTCAAGTAGA 58.931 41.667 0.00 0.00 0.00 2.59
1813 3288 6.263617 CCCTGTATCTAAGAGTAGACCTTCAC 59.736 46.154 0.00 0.00 39.20 3.18
1988 3463 7.550551 CAGACTTCAGGCATGTAATTTCTAGAA 59.449 37.037 0.00 0.00 0.00 2.10
2004 3479 6.382869 ACTTTCAAATGTTCAGACTTCAGG 57.617 37.500 0.00 0.00 0.00 3.86
2033 3508 3.003480 CCTAACAGGTAGAAAGTGCTGC 58.997 50.000 0.00 0.00 30.50 5.25
2043 3518 3.535561 CCTTGTGCATCCTAACAGGTAG 58.464 50.000 0.00 0.00 36.53 3.18
2045 3520 1.614317 GCCTTGTGCATCCTAACAGGT 60.614 52.381 0.00 0.00 40.77 4.00
2099 3574 8.929260 ATCAAATATAGCAACTGAATCCATCA 57.071 30.769 0.00 0.00 36.38 3.07
2131 3607 0.110056 GCACTGCATCCACTTGAACG 60.110 55.000 0.00 0.00 0.00 3.95
2142 3618 1.878088 CTTCTTGAGTGTGCACTGCAT 59.122 47.619 19.41 0.55 42.66 3.96
2224 3700 9.971922 CTCTGGAATATTTATTTGGAAATGGAC 57.028 33.333 0.00 0.00 31.51 4.02
2498 3976 9.722056 CAAGTTATCCATGAGTAATTAGCAAAC 57.278 33.333 0.00 0.00 0.00 2.93
2500 3978 7.013274 GCCAAGTTATCCATGAGTAATTAGCAA 59.987 37.037 0.00 0.00 0.00 3.91
2540 4018 5.362717 TCAGAAACCTTACTGACTTGACAGA 59.637 40.000 7.06 0.00 40.63 3.41
2726 4204 6.299023 TCAGCATAAATATTTGTAGTGGCG 57.701 37.500 11.05 2.06 0.00 5.69
2806 4284 4.253685 GAGAACCGGAACAGATGATTTCA 58.746 43.478 9.46 0.00 0.00 2.69
2816 4294 3.021695 AGTATCATCGAGAACCGGAACA 58.978 45.455 9.46 0.00 39.14 3.18
2911 4389 3.137728 CCCAGGAATAAAACCGGTAGGAT 59.862 47.826 8.00 0.00 41.02 3.24
3091 4571 2.826674 TTTTCCAATAGCAGGGGAGG 57.173 50.000 0.00 0.00 31.19 4.30
3095 4575 5.413499 CAGTGAAATTTTCCAATAGCAGGG 58.587 41.667 6.68 0.00 0.00 4.45
3458 5320 8.330466 TGAAGTCGCTAAAAATGGAATAAAGA 57.670 30.769 0.00 0.00 0.00 2.52
3483 5345 3.889815 TGCAGATCGAATGAGGGAAATT 58.110 40.909 5.26 0.00 0.00 1.82
3693 5555 3.739519 GCTGCAGTTCTATCCGAATCAGT 60.740 47.826 16.64 0.00 33.45 3.41
3730 5592 4.653868 TCGCCCAAGTTAAGATTAACCAA 58.346 39.130 10.99 0.00 43.03 3.67
4162 6030 0.443869 CAGTCAGCGTTGAAATCCCG 59.556 55.000 2.60 0.00 34.49 5.14
4167 6035 3.006940 ACAAAGTCAGTCAGCGTTGAAA 58.993 40.909 2.60 0.00 34.49 2.69
4171 6039 1.940613 GGAACAAAGTCAGTCAGCGTT 59.059 47.619 0.00 0.00 0.00 4.84
4297 7829 1.397390 CCGTATCGCCCAGGGTAGTT 61.397 60.000 7.55 0.00 0.00 2.24
4316 7848 0.618458 TACTTGACTCCCATGGTGCC 59.382 55.000 11.73 0.00 0.00 5.01
4340 7872 0.534652 TTTGCAATTTGGTGGCTGCC 60.535 50.000 12.87 12.87 33.78 4.85
4391 7924 2.484264 GCAGAAGCGTATCACTGGTTTT 59.516 45.455 0.00 0.00 0.00 2.43
4529 8072 4.846779 ATTTGTTGCATAACACGTTCCT 57.153 36.364 0.00 0.00 45.91 3.36
4553 8097 7.438160 CCTGAGTATGATCGTGTAGCATAAAAA 59.562 37.037 0.00 0.00 38.16 1.94
4554 8098 6.923508 CCTGAGTATGATCGTGTAGCATAAAA 59.076 38.462 0.00 0.00 38.16 1.52
4555 8099 6.264518 TCCTGAGTATGATCGTGTAGCATAAA 59.735 38.462 0.00 0.00 38.16 1.40
4575 8119 4.021104 CGGCCATCTCTATAATGTTCCTGA 60.021 45.833 2.24 0.00 0.00 3.86
4576 8120 4.248859 CGGCCATCTCTATAATGTTCCTG 58.751 47.826 2.24 0.00 0.00 3.86
4584 8128 5.719563 TGATCATTACCGGCCATCTCTATAA 59.280 40.000 0.00 0.00 0.00 0.98
4588 8132 2.329267 TGATCATTACCGGCCATCTCT 58.671 47.619 0.00 0.00 0.00 3.10
4597 8141 6.668541 AGTTGATGAGTTTGATCATTACCG 57.331 37.500 0.00 0.00 40.02 4.02
4615 8159 3.345508 TCTCGGTACTCTGCTAGTTGA 57.654 47.619 0.00 0.00 39.80 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.