Multiple sequence alignment - TraesCS3B01G273000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G273000 chr3B 100.000 4436 0 0 1 4436 439467184 439462749 0.000000e+00 8192
1 TraesCS3B01G273000 chr3B 75.228 1865 408 38 1277 3117 439858911 439857077 0.000000e+00 835
2 TraesCS3B01G273000 chr3D 96.013 3787 95 26 522 4279 340722318 340718559 0.000000e+00 6106
3 TraesCS3B01G273000 chr3D 75.276 1901 411 43 1259 3135 340890498 340888633 0.000000e+00 852
4 TraesCS3B01G273000 chr3D 94.340 159 5 2 4279 4436 340718476 340718321 1.590000e-59 241
5 TraesCS3B01G273000 chr3D 94.697 132 6 1 238 368 340723556 340723425 2.090000e-48 204
6 TraesCS3B01G273000 chr3A 94.674 3586 130 22 880 4436 463114532 463118085 0.000000e+00 5507
7 TraesCS3B01G273000 chr3A 75.318 1884 409 40 1274 3135 462333167 462335016 0.000000e+00 852
8 TraesCS3B01G273000 chr3A 92.402 408 17 4 480 883 463114033 463114430 1.790000e-158 569
9 TraesCS3B01G273000 chrUn 100.000 401 0 0 2417 2817 478689329 478689729 0.000000e+00 741
10 TraesCS3B01G273000 chr5A 94.924 197 7 3 2 196 651741782 651741977 5.570000e-79 305
11 TraesCS3B01G273000 chr7D 86.517 178 16 5 18 194 363563203 363563033 5.860000e-44 189
12 TraesCS3B01G273000 chr1D 85.635 181 19 4 15 194 474440709 474440535 2.730000e-42 183
13 TraesCS3B01G273000 chr1D 85.635 181 19 4 15 194 474441497 474441323 2.730000e-42 183
14 TraesCS3B01G273000 chr1D 71.926 488 109 20 1126 1602 443552789 443553259 2.800000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G273000 chr3B 439462749 439467184 4435 True 8192.000000 8192 100.000000 1 4436 1 chr3B.!!$R1 4435
1 TraesCS3B01G273000 chr3B 439857077 439858911 1834 True 835.000000 835 75.228000 1277 3117 1 chr3B.!!$R2 1840
2 TraesCS3B01G273000 chr3D 340718321 340723556 5235 True 2183.666667 6106 95.016667 238 4436 3 chr3D.!!$R2 4198
3 TraesCS3B01G273000 chr3D 340888633 340890498 1865 True 852.000000 852 75.276000 1259 3135 1 chr3D.!!$R1 1876
4 TraesCS3B01G273000 chr3A 463114033 463118085 4052 False 3038.000000 5507 93.538000 480 4436 2 chr3A.!!$F2 3956
5 TraesCS3B01G273000 chr3A 462333167 462335016 1849 False 852.000000 852 75.318000 1274 3135 1 chr3A.!!$F1 1861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.035317 GCCCCCAAAAGAAAAGCTGG 59.965 55.0 0.00 0.00 0.0 4.85 F
40 41 0.035317 CCCCCAAAAGAAAAGCTGGC 59.965 55.0 0.00 0.00 0.0 4.85 F
233 234 0.250234 CCTTCAGGTCGCCATCAAGA 59.750 55.0 0.00 0.00 0.0 3.02 F
2817 3965 0.177604 GACTGCTCTCATGGGGTCAG 59.822 60.0 11.76 11.76 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1271 2410 1.204113 GGATATCCTGGAGCCCTGGG 61.204 65.000 14.97 8.86 42.03 4.45 R
1830 2970 1.469703 TGCACATAACACATCTGCTGC 59.530 47.619 0.00 0.00 0.00 5.25 R
3060 4208 5.123820 GCTGTAAACATCTACCTTTGCATCA 59.876 40.000 0.00 0.00 0.00 3.07 R
4011 5165 1.202891 ACAGGGGGTAAGTCAGTTTGC 60.203 52.381 0.00 0.00 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.113658 TCTATAAGATTATTCAGATCGCCCC 57.886 40.000 0.00 0.00 0.00 5.80
25 26 3.425162 AAGATTATTCAGATCGCCCCC 57.575 47.619 0.00 0.00 0.00 5.40
26 27 2.338809 AGATTATTCAGATCGCCCCCA 58.661 47.619 0.00 0.00 0.00 4.96
27 28 2.711009 AGATTATTCAGATCGCCCCCAA 59.289 45.455 0.00 0.00 0.00 4.12
28 29 3.138283 AGATTATTCAGATCGCCCCCAAA 59.862 43.478 0.00 0.00 0.00 3.28
29 30 3.374042 TTATTCAGATCGCCCCCAAAA 57.626 42.857 0.00 0.00 0.00 2.44
30 31 1.767759 ATTCAGATCGCCCCCAAAAG 58.232 50.000 0.00 0.00 0.00 2.27
31 32 0.695924 TTCAGATCGCCCCCAAAAGA 59.304 50.000 0.00 0.00 0.00 2.52
32 33 0.695924 TCAGATCGCCCCCAAAAGAA 59.304 50.000 0.00 0.00 0.00 2.52
33 34 1.074727 TCAGATCGCCCCCAAAAGAAA 59.925 47.619 0.00 0.00 0.00 2.52
34 35 1.892474 CAGATCGCCCCCAAAAGAAAA 59.108 47.619 0.00 0.00 0.00 2.29
35 36 2.094545 CAGATCGCCCCCAAAAGAAAAG 60.095 50.000 0.00 0.00 0.00 2.27
36 37 0.608130 ATCGCCCCCAAAAGAAAAGC 59.392 50.000 0.00 0.00 0.00 3.51
37 38 0.469144 TCGCCCCCAAAAGAAAAGCT 60.469 50.000 0.00 0.00 0.00 3.74
38 39 0.319813 CGCCCCCAAAAGAAAAGCTG 60.320 55.000 0.00 0.00 0.00 4.24
39 40 0.035317 GCCCCCAAAAGAAAAGCTGG 59.965 55.000 0.00 0.00 0.00 4.85
40 41 0.035317 CCCCCAAAAGAAAAGCTGGC 59.965 55.000 0.00 0.00 0.00 4.85
41 42 0.758123 CCCCAAAAGAAAAGCTGGCA 59.242 50.000 0.00 0.00 0.00 4.92
42 43 1.348696 CCCCAAAAGAAAAGCTGGCAT 59.651 47.619 0.00 0.00 0.00 4.40
43 44 2.613725 CCCCAAAAGAAAAGCTGGCATC 60.614 50.000 0.00 0.00 0.00 3.91
44 45 2.301009 CCCAAAAGAAAAGCTGGCATCT 59.699 45.455 0.00 0.00 0.00 2.90
45 46 3.244318 CCCAAAAGAAAAGCTGGCATCTT 60.244 43.478 0.00 0.00 33.73 2.40
46 47 3.744426 CCAAAAGAAAAGCTGGCATCTTG 59.256 43.478 4.08 0.00 32.72 3.02
47 48 2.738013 AAGAAAAGCTGGCATCTTGC 57.262 45.000 4.08 0.00 44.08 4.01
57 58 1.807886 GCATCTTGCAGCCTTCAGG 59.192 57.895 0.00 0.00 44.26 3.86
58 59 1.664321 GCATCTTGCAGCCTTCAGGG 61.664 60.000 0.00 0.00 44.26 4.45
67 68 2.045045 CCTTCAGGGCGCCATCAA 60.045 61.111 30.85 14.53 0.00 2.57
68 69 1.678635 CCTTCAGGGCGCCATCAAA 60.679 57.895 30.85 16.72 0.00 2.69
69 70 1.250154 CCTTCAGGGCGCCATCAAAA 61.250 55.000 30.85 14.05 0.00 2.44
70 71 0.819582 CTTCAGGGCGCCATCAAAAT 59.180 50.000 30.85 0.91 0.00 1.82
71 72 1.205417 CTTCAGGGCGCCATCAAAATT 59.795 47.619 30.85 0.00 0.00 1.82
72 73 1.265236 TCAGGGCGCCATCAAAATTT 58.735 45.000 30.85 0.00 0.00 1.82
73 74 1.204467 TCAGGGCGCCATCAAAATTTC 59.796 47.619 30.85 6.30 0.00 2.17
74 75 1.205417 CAGGGCGCCATCAAAATTTCT 59.795 47.619 30.85 8.91 0.00 2.52
75 76 2.426738 CAGGGCGCCATCAAAATTTCTA 59.573 45.455 30.85 0.00 0.00 2.10
76 77 2.689983 AGGGCGCCATCAAAATTTCTAG 59.310 45.455 30.85 0.00 0.00 2.43
77 78 2.427095 GGGCGCCATCAAAATTTCTAGT 59.573 45.455 30.85 0.00 0.00 2.57
78 79 3.630312 GGGCGCCATCAAAATTTCTAGTA 59.370 43.478 30.85 0.00 0.00 1.82
79 80 4.497507 GGGCGCCATCAAAATTTCTAGTAC 60.498 45.833 30.85 0.00 0.00 2.73
80 81 4.095782 GGCGCCATCAAAATTTCTAGTACA 59.904 41.667 24.80 0.00 0.00 2.90
81 82 5.266242 GCGCCATCAAAATTTCTAGTACAG 58.734 41.667 0.00 0.00 0.00 2.74
82 83 5.064707 GCGCCATCAAAATTTCTAGTACAGA 59.935 40.000 0.00 0.00 0.00 3.41
83 84 6.403200 GCGCCATCAAAATTTCTAGTACAGAA 60.403 38.462 0.00 0.00 41.66 3.02
84 85 7.679638 GCGCCATCAAAATTTCTAGTACAGAAT 60.680 37.037 0.00 0.00 42.88 2.40
85 86 7.641411 CGCCATCAAAATTTCTAGTACAGAATG 59.359 37.037 8.08 5.05 42.88 2.67
86 87 7.433425 GCCATCAAAATTTCTAGTACAGAATGC 59.567 37.037 8.08 0.00 42.88 3.56
87 88 8.461222 CCATCAAAATTTCTAGTACAGAATGCA 58.539 33.333 8.08 0.00 42.88 3.96
88 89 9.844790 CATCAAAATTTCTAGTACAGAATGCAA 57.155 29.630 0.00 0.00 42.88 4.08
90 91 9.844790 TCAAAATTTCTAGTACAGAATGCAATG 57.155 29.630 0.00 0.00 42.88 2.82
91 92 8.589629 CAAAATTTCTAGTACAGAATGCAATGC 58.410 33.333 0.00 0.00 42.88 3.56
92 93 5.818136 TTTCTAGTACAGAATGCAATGCC 57.182 39.130 1.53 0.00 42.88 4.40
93 94 3.808728 TCTAGTACAGAATGCAATGCCC 58.191 45.455 1.53 0.00 42.53 5.36
94 95 2.814805 AGTACAGAATGCAATGCCCT 57.185 45.000 1.53 0.00 42.53 5.19
95 96 3.931907 AGTACAGAATGCAATGCCCTA 57.068 42.857 1.53 0.00 42.53 3.53
96 97 4.443978 AGTACAGAATGCAATGCCCTAT 57.556 40.909 1.53 0.00 42.53 2.57
97 98 4.139786 AGTACAGAATGCAATGCCCTATG 58.860 43.478 1.53 0.00 42.53 2.23
98 99 3.301794 ACAGAATGCAATGCCCTATGA 57.698 42.857 1.53 0.00 42.53 2.15
99 100 3.840991 ACAGAATGCAATGCCCTATGAT 58.159 40.909 1.53 0.00 42.53 2.45
100 101 3.825014 ACAGAATGCAATGCCCTATGATC 59.175 43.478 1.53 0.00 42.53 2.92
101 102 3.824443 CAGAATGCAATGCCCTATGATCA 59.176 43.478 1.53 0.00 0.00 2.92
102 103 3.825014 AGAATGCAATGCCCTATGATCAC 59.175 43.478 1.53 0.00 0.00 3.06
103 104 3.520691 ATGCAATGCCCTATGATCACT 57.479 42.857 1.53 0.00 0.00 3.41
104 105 2.578786 TGCAATGCCCTATGATCACTG 58.421 47.619 1.53 0.00 0.00 3.66
105 106 1.884579 GCAATGCCCTATGATCACTGG 59.115 52.381 0.00 2.92 0.00 4.00
106 107 2.487805 GCAATGCCCTATGATCACTGGA 60.488 50.000 15.22 0.00 0.00 3.86
107 108 3.824133 CAATGCCCTATGATCACTGGAA 58.176 45.455 15.22 4.09 0.00 3.53
108 109 3.498774 ATGCCCTATGATCACTGGAAC 57.501 47.619 15.22 8.79 0.00 3.62
109 110 2.195727 TGCCCTATGATCACTGGAACA 58.804 47.619 15.22 10.77 0.00 3.18
110 111 2.779430 TGCCCTATGATCACTGGAACAT 59.221 45.455 15.22 0.00 39.53 2.71
111 112 3.973305 TGCCCTATGATCACTGGAACATA 59.027 43.478 15.22 0.00 37.64 2.29
112 113 4.411869 TGCCCTATGATCACTGGAACATAA 59.588 41.667 15.22 0.00 38.03 1.90
113 114 4.999950 GCCCTATGATCACTGGAACATAAG 59.000 45.833 15.22 1.12 38.03 1.73
114 115 4.999950 CCCTATGATCACTGGAACATAAGC 59.000 45.833 15.22 0.00 38.03 3.09
115 116 5.455183 CCCTATGATCACTGGAACATAAGCA 60.455 44.000 15.22 0.00 38.03 3.91
116 117 5.468072 CCTATGATCACTGGAACATAAGCAC 59.532 44.000 9.55 0.00 38.03 4.40
117 118 4.558226 TGATCACTGGAACATAAGCACT 57.442 40.909 0.00 0.00 38.20 4.40
118 119 4.910195 TGATCACTGGAACATAAGCACTT 58.090 39.130 0.00 0.00 38.20 3.16
119 120 4.937620 TGATCACTGGAACATAAGCACTTC 59.062 41.667 0.00 0.00 38.20 3.01
120 121 4.350368 TCACTGGAACATAAGCACTTCA 57.650 40.909 0.00 0.00 38.20 3.02
121 122 4.713553 TCACTGGAACATAAGCACTTCAA 58.286 39.130 0.00 0.00 38.20 2.69
122 123 5.129634 TCACTGGAACATAAGCACTTCAAA 58.870 37.500 0.00 0.00 38.20 2.69
123 124 5.592282 TCACTGGAACATAAGCACTTCAAAA 59.408 36.000 0.00 0.00 38.20 2.44
124 125 5.916883 CACTGGAACATAAGCACTTCAAAAG 59.083 40.000 0.00 0.00 38.20 2.27
125 126 5.827797 ACTGGAACATAAGCACTTCAAAAGA 59.172 36.000 0.00 0.00 38.20 2.52
126 127 6.321181 ACTGGAACATAAGCACTTCAAAAGAA 59.679 34.615 0.00 0.00 38.20 2.52
127 128 7.014615 ACTGGAACATAAGCACTTCAAAAGAAT 59.985 33.333 0.00 0.00 38.20 2.40
128 129 7.147312 TGGAACATAAGCACTTCAAAAGAATG 58.853 34.615 0.00 0.00 0.00 2.67
129 130 6.587608 GGAACATAAGCACTTCAAAAGAATGG 59.412 38.462 0.00 0.00 0.00 3.16
130 131 6.899393 ACATAAGCACTTCAAAAGAATGGA 57.101 33.333 0.00 0.00 0.00 3.41
131 132 7.288810 ACATAAGCACTTCAAAAGAATGGAA 57.711 32.000 0.00 0.00 0.00 3.53
132 133 7.373493 ACATAAGCACTTCAAAAGAATGGAAG 58.627 34.615 0.00 0.00 42.79 3.46
133 134 4.248691 AGCACTTCAAAAGAATGGAAGC 57.751 40.909 0.00 0.00 41.26 3.86
134 135 3.638160 AGCACTTCAAAAGAATGGAAGCA 59.362 39.130 0.00 0.00 41.26 3.91
135 136 3.737774 GCACTTCAAAAGAATGGAAGCAC 59.262 43.478 0.00 0.00 41.26 4.40
136 137 4.500375 GCACTTCAAAAGAATGGAAGCACT 60.500 41.667 0.00 0.00 41.26 4.40
137 138 5.594926 CACTTCAAAAGAATGGAAGCACTT 58.405 37.500 0.00 0.00 41.26 3.16
138 139 5.461078 CACTTCAAAAGAATGGAAGCACTTG 59.539 40.000 0.00 0.00 41.26 3.16
139 140 5.127682 ACTTCAAAAGAATGGAAGCACTTGT 59.872 36.000 0.00 0.00 41.26 3.16
140 141 6.321181 ACTTCAAAAGAATGGAAGCACTTGTA 59.679 34.615 0.00 0.00 41.26 2.41
141 142 6.317789 TCAAAAGAATGGAAGCACTTGTAG 57.682 37.500 0.00 0.00 0.00 2.74
142 143 5.827797 TCAAAAGAATGGAAGCACTTGTAGT 59.172 36.000 0.00 0.00 0.00 2.73
143 144 6.995686 TCAAAAGAATGGAAGCACTTGTAGTA 59.004 34.615 0.00 0.00 0.00 1.82
144 145 6.803154 AAAGAATGGAAGCACTTGTAGTAC 57.197 37.500 0.00 0.00 0.00 2.73
145 146 4.495422 AGAATGGAAGCACTTGTAGTACG 58.505 43.478 0.00 0.00 0.00 3.67
146 147 2.736144 TGGAAGCACTTGTAGTACGG 57.264 50.000 0.00 0.00 0.00 4.02
147 148 2.241160 TGGAAGCACTTGTAGTACGGA 58.759 47.619 0.00 0.00 0.00 4.69
148 149 2.629137 TGGAAGCACTTGTAGTACGGAA 59.371 45.455 0.00 0.00 0.00 4.30
149 150 3.259876 TGGAAGCACTTGTAGTACGGAAT 59.740 43.478 0.00 0.00 0.00 3.01
150 151 4.463539 TGGAAGCACTTGTAGTACGGAATA 59.536 41.667 0.00 0.00 0.00 1.75
151 152 4.802563 GGAAGCACTTGTAGTACGGAATAC 59.197 45.833 0.00 0.00 0.00 1.89
152 153 5.395682 AAGCACTTGTAGTACGGAATACA 57.604 39.130 3.29 3.29 36.09 2.29
153 154 5.395682 AGCACTTGTAGTACGGAATACAA 57.604 39.130 18.83 18.83 39.06 2.41
154 155 5.786311 AGCACTTGTAGTACGGAATACAAA 58.214 37.500 20.15 6.14 40.38 2.83
155 156 6.225318 AGCACTTGTAGTACGGAATACAAAA 58.775 36.000 20.15 0.96 40.38 2.44
156 157 6.877322 AGCACTTGTAGTACGGAATACAAAAT 59.123 34.615 20.15 9.82 40.38 1.82
157 158 7.389607 AGCACTTGTAGTACGGAATACAAAATT 59.610 33.333 20.15 6.40 40.38 1.82
158 159 8.019094 GCACTTGTAGTACGGAATACAAAATTT 58.981 33.333 20.15 4.14 40.38 1.82
159 160 9.887406 CACTTGTAGTACGGAATACAAAATTTT 57.113 29.630 20.15 0.00 40.38 1.82
163 164 9.723601 TGTAGTACGGAATACAAAATTTTAGGT 57.276 29.630 5.26 1.18 36.09 3.08
166 167 8.024865 AGTACGGAATACAAAATTTTAGGTTGC 58.975 33.333 2.44 3.49 36.09 4.17
167 168 6.750148 ACGGAATACAAAATTTTAGGTTGCA 58.250 32.000 2.44 0.00 0.00 4.08
168 169 7.382898 ACGGAATACAAAATTTTAGGTTGCAT 58.617 30.769 2.44 0.00 0.00 3.96
169 170 7.330700 ACGGAATACAAAATTTTAGGTTGCATG 59.669 33.333 2.44 0.00 0.00 4.06
170 171 7.543868 CGGAATACAAAATTTTAGGTTGCATGA 59.456 33.333 2.44 0.00 0.00 3.07
171 172 9.213799 GGAATACAAAATTTTAGGTTGCATGAA 57.786 29.630 2.44 0.00 0.00 2.57
173 174 9.995003 AATACAAAATTTTAGGTTGCATGAAGA 57.005 25.926 2.44 0.00 0.00 2.87
174 175 9.995003 ATACAAAATTTTAGGTTGCATGAAGAA 57.005 25.926 2.44 0.00 0.00 2.52
175 176 8.141835 ACAAAATTTTAGGTTGCATGAAGAAC 57.858 30.769 2.44 0.00 0.00 3.01
176 177 7.226523 ACAAAATTTTAGGTTGCATGAAGAACC 59.773 33.333 2.44 11.80 41.81 3.62
177 178 4.864704 TTTTAGGTTGCATGAAGAACCC 57.135 40.909 14.75 0.00 42.38 4.11
178 179 3.517296 TTAGGTTGCATGAAGAACCCA 57.483 42.857 14.75 2.96 42.38 4.51
179 180 2.610438 AGGTTGCATGAAGAACCCAT 57.390 45.000 14.75 0.01 42.38 4.00
180 181 2.893424 AGGTTGCATGAAGAACCCATT 58.107 42.857 14.75 0.00 42.38 3.16
181 182 3.242011 AGGTTGCATGAAGAACCCATTT 58.758 40.909 14.75 0.00 42.38 2.32
182 183 3.647590 AGGTTGCATGAAGAACCCATTTT 59.352 39.130 14.75 0.00 42.38 1.82
183 184 3.996363 GGTTGCATGAAGAACCCATTTTC 59.004 43.478 0.00 0.00 36.39 2.29
184 185 3.959535 TGCATGAAGAACCCATTTTCC 57.040 42.857 0.00 0.00 0.00 3.13
185 186 3.237746 TGCATGAAGAACCCATTTTCCA 58.762 40.909 0.00 0.00 0.00 3.53
186 187 3.839490 TGCATGAAGAACCCATTTTCCAT 59.161 39.130 0.00 0.00 0.00 3.41
187 188 4.286549 TGCATGAAGAACCCATTTTCCATT 59.713 37.500 0.00 0.00 0.00 3.16
188 189 4.872124 GCATGAAGAACCCATTTTCCATTC 59.128 41.667 0.00 0.00 0.00 2.67
189 190 5.569227 GCATGAAGAACCCATTTTCCATTCA 60.569 40.000 0.00 0.00 29.34 2.57
190 191 6.646267 CATGAAGAACCCATTTTCCATTCAT 58.354 36.000 0.00 0.00 33.71 2.57
191 192 6.684897 TGAAGAACCCATTTTCCATTCATT 57.315 33.333 0.00 0.00 0.00 2.57
192 193 7.077050 TGAAGAACCCATTTTCCATTCATTT 57.923 32.000 0.00 0.00 0.00 2.32
193 194 6.935771 TGAAGAACCCATTTTCCATTCATTTG 59.064 34.615 0.00 0.00 0.00 2.32
194 195 6.684897 AGAACCCATTTTCCATTCATTTGA 57.315 33.333 0.00 0.00 0.00 2.69
195 196 7.077050 AGAACCCATTTTCCATTCATTTGAA 57.923 32.000 0.00 0.00 38.56 2.69
196 197 7.163441 AGAACCCATTTTCCATTCATTTGAAG 58.837 34.615 0.00 0.00 37.48 3.02
197 198 6.684897 ACCCATTTTCCATTCATTTGAAGA 57.315 33.333 0.00 0.00 37.48 2.87
198 199 6.466812 ACCCATTTTCCATTCATTTGAAGAC 58.533 36.000 0.00 0.00 37.48 3.01
199 200 5.876460 CCCATTTTCCATTCATTTGAAGACC 59.124 40.000 0.00 0.00 37.48 3.85
200 201 6.465948 CCATTTTCCATTCATTTGAAGACCA 58.534 36.000 0.00 0.00 37.48 4.02
201 202 6.935771 CCATTTTCCATTCATTTGAAGACCAA 59.064 34.615 0.00 0.00 37.48 3.67
202 203 7.095102 CCATTTTCCATTCATTTGAAGACCAAC 60.095 37.037 0.00 0.00 37.48 3.77
203 204 6.729690 TTTCCATTCATTTGAAGACCAACT 57.270 33.333 0.00 0.00 37.48 3.16
204 205 7.831691 TTTCCATTCATTTGAAGACCAACTA 57.168 32.000 0.00 0.00 37.48 2.24
205 206 7.831691 TTCCATTCATTTGAAGACCAACTAA 57.168 32.000 0.00 0.00 37.48 2.24
206 207 7.831691 TCCATTCATTTGAAGACCAACTAAA 57.168 32.000 0.00 0.00 37.48 1.85
207 208 8.421249 TCCATTCATTTGAAGACCAACTAAAT 57.579 30.769 0.00 0.00 37.48 1.40
208 209 8.869109 TCCATTCATTTGAAGACCAACTAAATT 58.131 29.630 0.00 0.00 37.48 1.82
209 210 9.492973 CCATTCATTTGAAGACCAACTAAATTT 57.507 29.630 0.00 0.00 37.48 1.82
211 212 7.945033 TCATTTGAAGACCAACTAAATTTGC 57.055 32.000 0.00 0.00 33.85 3.68
212 213 7.495901 TCATTTGAAGACCAACTAAATTTGCA 58.504 30.769 0.00 0.00 33.85 4.08
213 214 7.652909 TCATTTGAAGACCAACTAAATTTGCAG 59.347 33.333 0.00 0.00 33.85 4.41
214 215 4.870363 TGAAGACCAACTAAATTTGCAGC 58.130 39.130 0.00 0.00 0.00 5.25
215 216 3.942130 AGACCAACTAAATTTGCAGCC 57.058 42.857 0.00 0.00 0.00 4.85
216 217 3.500343 AGACCAACTAAATTTGCAGCCT 58.500 40.909 0.00 0.00 0.00 4.58
217 218 3.897505 AGACCAACTAAATTTGCAGCCTT 59.102 39.130 0.00 0.00 0.00 4.35
218 219 4.021981 AGACCAACTAAATTTGCAGCCTTC 60.022 41.667 0.00 0.00 0.00 3.46
219 220 3.640967 ACCAACTAAATTTGCAGCCTTCA 59.359 39.130 0.00 0.00 0.00 3.02
220 221 4.240096 CCAACTAAATTTGCAGCCTTCAG 58.760 43.478 0.00 0.00 0.00 3.02
221 222 4.240096 CAACTAAATTTGCAGCCTTCAGG 58.760 43.478 0.00 0.00 38.53 3.86
222 223 3.500343 ACTAAATTTGCAGCCTTCAGGT 58.500 40.909 0.00 0.00 37.57 4.00
223 224 3.507622 ACTAAATTTGCAGCCTTCAGGTC 59.492 43.478 0.00 0.00 37.57 3.85
224 225 0.883833 AATTTGCAGCCTTCAGGTCG 59.116 50.000 0.00 0.00 37.57 4.79
225 226 1.589716 ATTTGCAGCCTTCAGGTCGC 61.590 55.000 0.00 0.00 37.57 5.19
226 227 4.704833 TGCAGCCTTCAGGTCGCC 62.705 66.667 6.27 0.00 37.57 5.54
227 228 4.704833 GCAGCCTTCAGGTCGCCA 62.705 66.667 0.00 0.00 37.57 5.69
228 229 2.270205 CAGCCTTCAGGTCGCCAT 59.730 61.111 0.00 0.00 37.57 4.40
229 230 1.817099 CAGCCTTCAGGTCGCCATC 60.817 63.158 0.00 0.00 37.57 3.51
230 231 2.268920 GCCTTCAGGTCGCCATCA 59.731 61.111 0.00 0.00 37.57 3.07
231 232 1.377202 GCCTTCAGGTCGCCATCAA 60.377 57.895 0.00 0.00 37.57 2.57
232 233 1.372087 GCCTTCAGGTCGCCATCAAG 61.372 60.000 0.00 0.00 37.57 3.02
233 234 0.250234 CCTTCAGGTCGCCATCAAGA 59.750 55.000 0.00 0.00 0.00 3.02
234 235 1.363744 CTTCAGGTCGCCATCAAGAC 58.636 55.000 0.00 0.00 36.70 3.01
235 236 0.976641 TTCAGGTCGCCATCAAGACT 59.023 50.000 0.00 0.00 37.52 3.24
236 237 1.847328 TCAGGTCGCCATCAAGACTA 58.153 50.000 0.00 0.00 37.52 2.59
249 250 6.648725 GCCATCAAGACTATAGAAGACATTCC 59.351 42.308 6.78 0.00 35.94 3.01
268 270 3.149196 TCCATTGTGAAGCTTGAAGACC 58.851 45.455 2.10 0.00 0.00 3.85
286 288 8.934023 TGAAGACCAACTAAATTAAAGACCAT 57.066 30.769 0.00 0.00 0.00 3.55
327 329 0.389817 TCGCAACGAGAGGAACATGG 60.390 55.000 0.00 0.00 0.00 3.66
345 347 1.476007 GGCTGAGTCAGTGGTCACCT 61.476 60.000 21.06 0.00 33.43 4.00
368 370 4.639334 AGAAGCAGCACATGATCGATATT 58.361 39.130 0.00 0.00 0.00 1.28
369 371 4.689812 AGAAGCAGCACATGATCGATATTC 59.310 41.667 0.00 0.00 0.00 1.75
370 372 3.999046 AGCAGCACATGATCGATATTCA 58.001 40.909 0.00 0.00 0.00 2.57
378 380 3.658757 TGATCGATATTCATGCGTCCA 57.341 42.857 0.00 0.00 0.00 4.02
379 381 4.192429 TGATCGATATTCATGCGTCCAT 57.808 40.909 0.00 0.00 0.00 3.41
396 1400 1.882912 CATGATACCCATGTGGACCG 58.117 55.000 0.00 0.00 45.83 4.79
401 1405 0.466543 TACCCATGTGGACCGCATAC 59.533 55.000 20.02 0.00 37.39 2.39
436 1442 4.415596 TGGTGTAAATTTCTTGCCTCCAT 58.584 39.130 0.00 0.00 0.00 3.41
440 1446 6.325596 GTGTAAATTTCTTGCCTCCATCTTC 58.674 40.000 0.00 0.00 0.00 2.87
445 1451 4.647564 TTCTTGCCTCCATCTTCTCTTT 57.352 40.909 0.00 0.00 0.00 2.52
446 1452 4.213564 TCTTGCCTCCATCTTCTCTTTC 57.786 45.455 0.00 0.00 0.00 2.62
447 1453 3.843027 TCTTGCCTCCATCTTCTCTTTCT 59.157 43.478 0.00 0.00 0.00 2.52
448 1454 3.902881 TGCCTCCATCTTCTCTTTCTC 57.097 47.619 0.00 0.00 0.00 2.87
449 1455 3.448934 TGCCTCCATCTTCTCTTTCTCT 58.551 45.455 0.00 0.00 0.00 3.10
450 1456 3.450457 TGCCTCCATCTTCTCTTTCTCTC 59.550 47.826 0.00 0.00 0.00 3.20
451 1457 3.706086 GCCTCCATCTTCTCTTTCTCTCT 59.294 47.826 0.00 0.00 0.00 3.10
452 1458 4.202151 GCCTCCATCTTCTCTTTCTCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
453 1459 5.203528 CCTCCATCTTCTCTTTCTCTCTCT 58.796 45.833 0.00 0.00 0.00 3.10
454 1460 5.068198 CCTCCATCTTCTCTTTCTCTCTCTG 59.932 48.000 0.00 0.00 0.00 3.35
455 1461 4.955450 TCCATCTTCTCTTTCTCTCTCTGG 59.045 45.833 0.00 0.00 0.00 3.86
456 1462 4.099881 CCATCTTCTCTTTCTCTCTCTGGG 59.900 50.000 0.00 0.00 0.00 4.45
457 1463 3.707316 TCTTCTCTTTCTCTCTCTGGGG 58.293 50.000 0.00 0.00 0.00 4.96
458 1464 1.859302 TCTCTTTCTCTCTCTGGGGC 58.141 55.000 0.00 0.00 0.00 5.80
459 1465 1.077828 TCTCTTTCTCTCTCTGGGGCA 59.922 52.381 0.00 0.00 0.00 5.36
460 1466 1.905215 CTCTTTCTCTCTCTGGGGCAA 59.095 52.381 0.00 0.00 0.00 4.52
461 1467 2.304180 CTCTTTCTCTCTCTGGGGCAAA 59.696 50.000 0.00 0.00 0.00 3.68
462 1468 2.711009 TCTTTCTCTCTCTGGGGCAAAA 59.289 45.455 0.00 0.00 0.00 2.44
463 1469 2.867109 TTCTCTCTCTGGGGCAAAAG 57.133 50.000 0.00 0.00 0.00 2.27
464 1470 1.734655 TCTCTCTCTGGGGCAAAAGT 58.265 50.000 0.00 0.00 0.00 2.66
465 1471 2.057922 TCTCTCTCTGGGGCAAAAGTT 58.942 47.619 0.00 0.00 0.00 2.66
466 1472 2.443255 TCTCTCTCTGGGGCAAAAGTTT 59.557 45.455 0.00 0.00 0.00 2.66
467 1473 3.117512 TCTCTCTCTGGGGCAAAAGTTTT 60.118 43.478 0.00 0.00 0.00 2.43
468 1474 3.638627 CTCTCTCTGGGGCAAAAGTTTTT 59.361 43.478 0.00 0.00 0.00 1.94
496 1502 3.751518 GAAACTCTCTGGGGCAAAAGTA 58.248 45.455 0.00 0.00 0.00 2.24
579 1585 0.253044 GGATTACAGCCCAGCACAGA 59.747 55.000 0.00 0.00 0.00 3.41
581 1587 0.391661 ATTACAGCCCAGCACAGACG 60.392 55.000 0.00 0.00 0.00 4.18
601 1607 1.205893 GAAGGGAAGAGACACGCAGAT 59.794 52.381 0.00 0.00 0.00 2.90
621 1627 3.883180 ACACGCGTGCCAACCAAC 61.883 61.111 37.35 0.00 0.00 3.77
632 1638 2.294791 TGCCAACCAACAAAATACCGAG 59.705 45.455 0.00 0.00 0.00 4.63
633 1639 2.554893 GCCAACCAACAAAATACCGAGA 59.445 45.455 0.00 0.00 0.00 4.04
635 1641 4.794169 CCAACCAACAAAATACCGAGAAG 58.206 43.478 0.00 0.00 0.00 2.85
636 1642 4.517453 CCAACCAACAAAATACCGAGAAGA 59.483 41.667 0.00 0.00 0.00 2.87
637 1643 5.449304 CAACCAACAAAATACCGAGAAGAC 58.551 41.667 0.00 0.00 0.00 3.01
639 1645 4.202430 ACCAACAAAATACCGAGAAGACCT 60.202 41.667 0.00 0.00 0.00 3.85
722 1736 3.123620 GGCCAGCGCAACTCTCAG 61.124 66.667 11.47 0.00 36.38 3.35
723 1737 3.123620 GCCAGCGCAACTCTCAGG 61.124 66.667 11.47 0.00 34.03 3.86
724 1738 3.123620 CCAGCGCAACTCTCAGGC 61.124 66.667 11.47 0.00 0.00 4.85
725 1739 2.047465 CAGCGCAACTCTCAGGCT 60.047 61.111 11.47 0.00 0.00 4.58
726 1740 2.099431 CAGCGCAACTCTCAGGCTC 61.099 63.158 11.47 0.00 0.00 4.70
727 1741 2.817396 GCGCAACTCTCAGGCTCC 60.817 66.667 0.30 0.00 0.00 4.70
728 1742 2.507992 CGCAACTCTCAGGCTCCG 60.508 66.667 0.00 0.00 0.00 4.63
784 1798 5.888982 TTTCTGGGTCAGAGAAAGTTACT 57.111 39.130 0.00 0.00 41.75 2.24
785 1799 6.989155 TTTCTGGGTCAGAGAAAGTTACTA 57.011 37.500 0.00 0.00 41.75 1.82
786 1800 6.591750 TTCTGGGTCAGAGAAAGTTACTAG 57.408 41.667 0.00 0.00 41.75 2.57
838 1852 3.181489 ACGTAAATTCCTAGACGAGCAGG 60.181 47.826 6.42 0.00 38.63 4.85
889 2008 5.882557 ACAAACAAATGGATAGTAGCTCAGG 59.117 40.000 0.00 0.00 0.00 3.86
915 2034 1.092348 TACTGGTCACGAGATGGACG 58.908 55.000 0.00 0.00 34.87 4.79
921 2040 0.322187 TCACGAGATGGACGGACAGA 60.322 55.000 0.00 0.00 34.93 3.41
944 2063 1.002624 CCACTAAAAGAGCCCCGCA 60.003 57.895 0.00 0.00 0.00 5.69
990 2117 1.206610 CCTGTCTGTCATCACCTCCAG 59.793 57.143 0.00 0.00 0.00 3.86
1031 2161 2.315155 TCTTCTTCTACCCAGTAGCCCT 59.685 50.000 0.00 0.00 36.22 5.19
1032 2162 2.942604 TCTTCTACCCAGTAGCCCTT 57.057 50.000 0.00 0.00 36.22 3.95
1033 2163 2.748388 TCTTCTACCCAGTAGCCCTTC 58.252 52.381 0.00 0.00 36.22 3.46
1126 2265 7.741513 TCTGCAAGTAGATCGTGAGAAAGTCT 61.742 42.308 0.00 0.00 38.66 3.24
1218 2357 0.904649 TCTCCATCTGGTTCACGCAT 59.095 50.000 0.00 0.00 36.34 4.73
1271 2410 2.357034 TCGCTTCCCAGTGAACGC 60.357 61.111 0.00 0.00 36.56 4.84
1332 2471 2.093447 GGTCCTCACCGACTTCAATGAT 60.093 50.000 0.00 0.00 31.06 2.45
1623 2763 2.648059 AGCCCTGATTACAATGCACTC 58.352 47.619 0.00 0.00 0.00 3.51
1657 2797 1.198637 CTAGGTTCAACAGCAGCAAGC 59.801 52.381 0.00 0.00 46.19 4.01
1830 2970 0.392998 GTATCACAGGGCAGGGTGTG 60.393 60.000 0.00 0.00 44.59 3.82
2817 3965 0.177604 GACTGCTCTCATGGGGTCAG 59.822 60.000 11.76 11.76 0.00 3.51
2874 4022 3.623703 TGCTTACCTGCATCATGAATGT 58.376 40.909 0.00 0.00 38.12 2.71
3060 4208 4.847990 ATGGGTGATGAATTTGCCAATT 57.152 36.364 0.00 0.00 35.12 2.32
3145 4293 1.426251 TTCCAGTGGGGTGACAGCAT 61.426 55.000 9.92 0.00 38.11 3.79
3249 4397 1.796796 GGTGAAACAGATGCTCGCC 59.203 57.895 0.81 0.81 39.98 5.54
3402 4550 3.972133 TGCCAGAAATCTCATGGAATGT 58.028 40.909 0.00 0.00 46.80 2.71
3527 4677 7.520614 GCCATTTTCTATGCAGTGTATACCTTC 60.521 40.741 0.00 0.00 0.00 3.46
3531 4681 6.791867 TCTATGCAGTGTATACCTTCTGTT 57.208 37.500 15.87 9.85 0.00 3.16
3578 4729 3.015327 CTCCAGATTTTCTGCCTTCCTG 58.985 50.000 0.00 0.00 42.98 3.86
3582 4733 4.465305 CCAGATTTTCTGCCTTCCTGATTT 59.535 41.667 0.00 0.00 42.98 2.17
3624 4775 3.136791 GCTGCAAGGCTGGTAGGC 61.137 66.667 9.17 0.00 41.73 3.93
3733 4884 5.617751 CGGTTCAAATTGGATCAGTGAGTTC 60.618 44.000 0.00 0.00 0.00 3.01
3745 4896 4.989044 TCAGTGAGTTCGATAATGCGTTA 58.011 39.130 0.00 0.00 0.00 3.18
3769 4920 6.894828 ACGTTATTCAAATTGTGTCTGGTAC 58.105 36.000 0.00 0.00 0.00 3.34
3831 4982 4.442375 TGAGCTCTGCAAGTAGTAGTTC 57.558 45.455 16.19 0.00 33.76 3.01
3846 4997 9.969001 AAGTAGTAGTTCCTAGATATGGATCTC 57.031 37.037 0.00 0.00 41.75 2.75
3860 5014 1.402720 GGATCTCTAGAGCAGCGCATC 60.403 57.143 15.35 10.98 30.87 3.91
3895 5049 3.004002 ACCGGTTGCTTTTACTTTACAGC 59.996 43.478 0.00 0.00 0.00 4.40
3936 5090 6.118170 CAGGGAACATGATGTAAAGTCTCAT 58.882 40.000 0.00 0.00 0.00 2.90
3942 5096 5.942236 ACATGATGTAAAGTCTCATGCACTT 59.058 36.000 0.00 4.49 46.51 3.16
3987 5141 9.081997 CAAACTTTGTTTTGTTATGCTGTCTAA 57.918 29.630 0.00 0.00 32.68 2.10
3997 5151 5.479027 TGTTATGCTGTCTAACACTAGTGGA 59.521 40.000 26.12 11.62 34.90 4.02
4054 5209 7.571025 TGTACCGATCCTGCACTCTATATATA 58.429 38.462 0.00 0.00 0.00 0.86
4083 5238 6.931281 ACTATGCAGTATAGGCTGTTGTAATG 59.069 38.462 10.04 0.00 42.57 1.90
4160 5315 2.019984 GCAAGGGATGTCATGAAGGTC 58.980 52.381 0.00 0.00 0.00 3.85
4226 5383 5.406649 TGTGTCATTTTCGGATATTTTGGC 58.593 37.500 0.00 0.00 0.00 4.52
4302 5542 5.407387 CCATATTTTGATGGCTTAATGCTGC 59.593 40.000 0.00 0.00 40.08 5.25
4303 5543 4.748277 ATTTTGATGGCTTAATGCTGCT 57.252 36.364 0.00 0.00 42.39 4.24
4350 5590 7.105588 GGAAGTGCCCAGAAATTATTGAAAAT 58.894 34.615 0.00 0.00 0.00 1.82
4351 5591 7.607607 GGAAGTGCCCAGAAATTATTGAAAATT 59.392 33.333 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.127054 TGGGGGCGATCTGAATAATCTTATAG 60.127 42.308 0.00 0.00 0.00 1.31
2 3 5.724370 TGGGGGCGATCTGAATAATCTTATA 59.276 40.000 0.00 0.00 0.00 0.98
3 4 4.536090 TGGGGGCGATCTGAATAATCTTAT 59.464 41.667 0.00 0.00 0.00 1.73
4 5 3.907474 TGGGGGCGATCTGAATAATCTTA 59.093 43.478 0.00 0.00 0.00 2.10
5 6 2.711009 TGGGGGCGATCTGAATAATCTT 59.289 45.455 0.00 0.00 0.00 2.40
6 7 2.338809 TGGGGGCGATCTGAATAATCT 58.661 47.619 0.00 0.00 0.00 2.40
7 8 2.859165 TGGGGGCGATCTGAATAATC 57.141 50.000 0.00 0.00 0.00 1.75
8 9 3.593442 TTTGGGGGCGATCTGAATAAT 57.407 42.857 0.00 0.00 0.00 1.28
9 10 3.053991 TCTTTTGGGGGCGATCTGAATAA 60.054 43.478 0.00 0.00 0.00 1.40
10 11 2.507886 TCTTTTGGGGGCGATCTGAATA 59.492 45.455 0.00 0.00 0.00 1.75
11 12 1.284785 TCTTTTGGGGGCGATCTGAAT 59.715 47.619 0.00 0.00 0.00 2.57
12 13 0.695924 TCTTTTGGGGGCGATCTGAA 59.304 50.000 0.00 0.00 0.00 3.02
13 14 0.695924 TTCTTTTGGGGGCGATCTGA 59.304 50.000 0.00 0.00 0.00 3.27
14 15 1.544724 TTTCTTTTGGGGGCGATCTG 58.455 50.000 0.00 0.00 0.00 2.90
15 16 2.171003 CTTTTCTTTTGGGGGCGATCT 58.829 47.619 0.00 0.00 0.00 2.75
16 17 1.404181 GCTTTTCTTTTGGGGGCGATC 60.404 52.381 0.00 0.00 0.00 3.69
17 18 0.608130 GCTTTTCTTTTGGGGGCGAT 59.392 50.000 0.00 0.00 0.00 4.58
18 19 0.469144 AGCTTTTCTTTTGGGGGCGA 60.469 50.000 0.00 0.00 0.00 5.54
19 20 0.319813 CAGCTTTTCTTTTGGGGGCG 60.320 55.000 0.00 0.00 0.00 6.13
20 21 0.035317 CCAGCTTTTCTTTTGGGGGC 59.965 55.000 0.00 0.00 0.00 5.80
21 22 0.035317 GCCAGCTTTTCTTTTGGGGG 59.965 55.000 0.00 0.00 0.00 5.40
22 23 0.758123 TGCCAGCTTTTCTTTTGGGG 59.242 50.000 0.00 0.00 0.00 4.96
23 24 2.301009 AGATGCCAGCTTTTCTTTTGGG 59.699 45.455 0.00 0.00 0.00 4.12
24 25 3.672767 AGATGCCAGCTTTTCTTTTGG 57.327 42.857 0.00 0.00 0.00 3.28
25 26 3.185797 GCAAGATGCCAGCTTTTCTTTTG 59.814 43.478 0.00 0.00 37.42 2.44
26 27 3.181463 TGCAAGATGCCAGCTTTTCTTTT 60.181 39.130 0.00 0.00 44.23 2.27
27 28 2.366266 TGCAAGATGCCAGCTTTTCTTT 59.634 40.909 0.00 0.00 44.23 2.52
28 29 1.965643 TGCAAGATGCCAGCTTTTCTT 59.034 42.857 0.00 0.00 44.23 2.52
29 30 1.544691 CTGCAAGATGCCAGCTTTTCT 59.455 47.619 0.00 0.00 44.23 2.52
30 31 1.992170 CTGCAAGATGCCAGCTTTTC 58.008 50.000 0.00 0.00 44.23 2.29
31 32 0.037605 GCTGCAAGATGCCAGCTTTT 60.038 50.000 14.96 0.00 44.23 2.27
32 33 1.590147 GCTGCAAGATGCCAGCTTT 59.410 52.632 14.96 0.00 44.23 3.51
33 34 3.285371 GCTGCAAGATGCCAGCTT 58.715 55.556 14.96 0.00 44.23 3.74
38 39 1.664321 CCTGAAGGCTGCAAGATGCC 61.664 60.000 6.59 6.59 44.23 4.40
39 40 1.664321 CCCTGAAGGCTGCAAGATGC 61.664 60.000 0.50 0.00 45.29 3.91
40 41 2.490165 CCCTGAAGGCTGCAAGATG 58.510 57.895 0.50 0.00 34.07 2.90
50 51 1.250154 TTTTGATGGCGCCCTGAAGG 61.250 55.000 26.77 0.00 39.47 3.46
51 52 0.819582 ATTTTGATGGCGCCCTGAAG 59.180 50.000 26.77 0.00 0.00 3.02
52 53 1.265236 AATTTTGATGGCGCCCTGAA 58.735 45.000 26.77 12.58 0.00 3.02
53 54 1.204467 GAAATTTTGATGGCGCCCTGA 59.796 47.619 26.77 5.00 0.00 3.86
54 55 1.205417 AGAAATTTTGATGGCGCCCTG 59.795 47.619 26.77 0.00 0.00 4.45
55 56 1.560505 AGAAATTTTGATGGCGCCCT 58.439 45.000 26.77 15.82 0.00 5.19
56 57 2.427095 ACTAGAAATTTTGATGGCGCCC 59.573 45.455 26.77 10.34 0.00 6.13
57 58 3.782889 ACTAGAAATTTTGATGGCGCC 57.217 42.857 22.73 22.73 0.00 6.53
58 59 5.064707 TCTGTACTAGAAATTTTGATGGCGC 59.935 40.000 0.00 0.00 30.84 6.53
59 60 6.662414 TCTGTACTAGAAATTTTGATGGCG 57.338 37.500 0.00 0.00 30.84 5.69
72 73 3.455910 AGGGCATTGCATTCTGTACTAGA 59.544 43.478 11.39 0.00 0.00 2.43
73 74 3.813443 AGGGCATTGCATTCTGTACTAG 58.187 45.455 11.39 0.00 0.00 2.57
74 75 3.931907 AGGGCATTGCATTCTGTACTA 57.068 42.857 11.39 0.00 0.00 1.82
75 76 2.814805 AGGGCATTGCATTCTGTACT 57.185 45.000 11.39 0.00 0.00 2.73
76 77 4.136796 TCATAGGGCATTGCATTCTGTAC 58.863 43.478 11.39 0.00 0.00 2.90
77 78 4.436113 TCATAGGGCATTGCATTCTGTA 57.564 40.909 11.39 0.00 0.00 2.74
78 79 3.301794 TCATAGGGCATTGCATTCTGT 57.698 42.857 11.39 0.59 0.00 3.41
79 80 3.824443 TGATCATAGGGCATTGCATTCTG 59.176 43.478 11.39 2.87 0.00 3.02
80 81 3.825014 GTGATCATAGGGCATTGCATTCT 59.175 43.478 11.39 7.23 0.00 2.40
81 82 3.825014 AGTGATCATAGGGCATTGCATTC 59.175 43.478 11.39 0.00 0.00 2.67
82 83 3.572682 CAGTGATCATAGGGCATTGCATT 59.427 43.478 11.39 0.06 0.00 3.56
83 84 3.154710 CAGTGATCATAGGGCATTGCAT 58.845 45.455 11.39 0.73 0.00 3.96
84 85 2.578786 CAGTGATCATAGGGCATTGCA 58.421 47.619 11.39 0.00 0.00 4.08
85 86 1.884579 CCAGTGATCATAGGGCATTGC 59.115 52.381 0.00 0.00 0.00 3.56
86 87 3.497103 TCCAGTGATCATAGGGCATTG 57.503 47.619 14.29 0.00 0.00 2.82
87 88 3.202818 TGTTCCAGTGATCATAGGGCATT 59.797 43.478 14.29 0.00 0.00 3.56
88 89 2.779430 TGTTCCAGTGATCATAGGGCAT 59.221 45.455 14.29 0.00 0.00 4.40
89 90 2.195727 TGTTCCAGTGATCATAGGGCA 58.804 47.619 14.29 11.35 0.00 5.36
90 91 3.498774 ATGTTCCAGTGATCATAGGGC 57.501 47.619 14.29 9.47 30.81 5.19
91 92 4.999950 GCTTATGTTCCAGTGATCATAGGG 59.000 45.833 14.29 9.51 35.59 3.53
92 93 5.468072 GTGCTTATGTTCCAGTGATCATAGG 59.532 44.000 0.00 4.22 35.59 2.57
93 94 6.286758 AGTGCTTATGTTCCAGTGATCATAG 58.713 40.000 0.00 0.00 35.59 2.23
94 95 6.239217 AGTGCTTATGTTCCAGTGATCATA 57.761 37.500 0.00 0.00 33.85 2.15
95 96 5.108187 AGTGCTTATGTTCCAGTGATCAT 57.892 39.130 0.00 0.00 35.57 2.45
96 97 4.558226 AGTGCTTATGTTCCAGTGATCA 57.442 40.909 0.00 0.00 0.00 2.92
97 98 4.937620 TGAAGTGCTTATGTTCCAGTGATC 59.062 41.667 0.00 0.00 0.00 2.92
98 99 4.910195 TGAAGTGCTTATGTTCCAGTGAT 58.090 39.130 0.00 0.00 0.00 3.06
99 100 4.350368 TGAAGTGCTTATGTTCCAGTGA 57.650 40.909 0.00 0.00 0.00 3.41
100 101 5.437289 TTTGAAGTGCTTATGTTCCAGTG 57.563 39.130 0.00 0.00 0.00 3.66
101 102 5.827797 TCTTTTGAAGTGCTTATGTTCCAGT 59.172 36.000 0.00 0.00 0.00 4.00
102 103 6.317789 TCTTTTGAAGTGCTTATGTTCCAG 57.682 37.500 0.00 0.00 0.00 3.86
103 104 6.707440 TTCTTTTGAAGTGCTTATGTTCCA 57.293 33.333 0.00 0.00 33.92 3.53
104 105 6.587608 CCATTCTTTTGAAGTGCTTATGTTCC 59.412 38.462 0.00 0.00 42.30 3.62
105 106 7.370383 TCCATTCTTTTGAAGTGCTTATGTTC 58.630 34.615 0.00 0.00 42.30 3.18
106 107 7.288810 TCCATTCTTTTGAAGTGCTTATGTT 57.711 32.000 0.00 0.00 42.30 2.71
107 108 6.899393 TCCATTCTTTTGAAGTGCTTATGT 57.101 33.333 0.00 0.00 42.30 2.29
108 109 6.309737 GCTTCCATTCTTTTGAAGTGCTTATG 59.690 38.462 0.00 0.00 42.30 1.90
109 110 6.015180 TGCTTCCATTCTTTTGAAGTGCTTAT 60.015 34.615 0.00 0.00 42.30 1.73
110 111 5.301551 TGCTTCCATTCTTTTGAAGTGCTTA 59.698 36.000 0.00 0.00 42.30 3.09
111 112 4.099881 TGCTTCCATTCTTTTGAAGTGCTT 59.900 37.500 0.00 0.00 42.30 3.91
112 113 3.638160 TGCTTCCATTCTTTTGAAGTGCT 59.362 39.130 0.00 0.00 42.30 4.40
113 114 3.737774 GTGCTTCCATTCTTTTGAAGTGC 59.262 43.478 0.00 0.00 42.30 4.40
114 115 5.192327 AGTGCTTCCATTCTTTTGAAGTG 57.808 39.130 0.00 0.00 42.30 3.16
115 116 5.127682 ACAAGTGCTTCCATTCTTTTGAAGT 59.872 36.000 0.00 0.00 42.30 3.01
116 117 5.594926 ACAAGTGCTTCCATTCTTTTGAAG 58.405 37.500 0.00 0.00 42.30 3.02
117 118 5.596836 ACAAGTGCTTCCATTCTTTTGAA 57.403 34.783 0.00 0.00 43.30 2.69
118 119 5.827797 ACTACAAGTGCTTCCATTCTTTTGA 59.172 36.000 0.00 0.00 0.00 2.69
119 120 6.076981 ACTACAAGTGCTTCCATTCTTTTG 57.923 37.500 0.00 0.00 0.00 2.44
120 121 6.073222 CGTACTACAAGTGCTTCCATTCTTTT 60.073 38.462 0.00 0.00 0.00 2.27
121 122 5.408604 CGTACTACAAGTGCTTCCATTCTTT 59.591 40.000 0.00 0.00 0.00 2.52
122 123 4.929808 CGTACTACAAGTGCTTCCATTCTT 59.070 41.667 0.00 0.00 0.00 2.52
123 124 4.495422 CGTACTACAAGTGCTTCCATTCT 58.505 43.478 0.00 0.00 0.00 2.40
124 125 3.617263 CCGTACTACAAGTGCTTCCATTC 59.383 47.826 0.00 0.00 0.00 2.67
125 126 3.259876 TCCGTACTACAAGTGCTTCCATT 59.740 43.478 0.00 0.00 0.00 3.16
126 127 2.829720 TCCGTACTACAAGTGCTTCCAT 59.170 45.455 0.00 0.00 0.00 3.41
127 128 2.241160 TCCGTACTACAAGTGCTTCCA 58.759 47.619 0.00 0.00 0.00 3.53
128 129 3.308438 TTCCGTACTACAAGTGCTTCC 57.692 47.619 0.00 0.00 0.00 3.46
129 130 5.404946 TGTATTCCGTACTACAAGTGCTTC 58.595 41.667 0.00 0.00 34.27 3.86
130 131 5.395682 TGTATTCCGTACTACAAGTGCTT 57.604 39.130 0.00 0.00 34.27 3.91
131 132 5.395682 TTGTATTCCGTACTACAAGTGCT 57.604 39.130 2.27 0.00 33.96 4.40
132 133 6.470557 TTTTGTATTCCGTACTACAAGTGC 57.529 37.500 5.80 0.00 38.63 4.40
133 134 9.887406 AAAATTTTGTATTCCGTACTACAAGTG 57.113 29.630 1.75 0.00 38.63 3.16
137 138 9.723601 ACCTAAAATTTTGTATTCCGTACTACA 57.276 29.630 13.76 0.00 34.27 2.74
140 141 8.024865 GCAACCTAAAATTTTGTATTCCGTACT 58.975 33.333 13.76 0.00 34.27 2.73
141 142 7.808856 TGCAACCTAAAATTTTGTATTCCGTAC 59.191 33.333 13.76 0.00 0.00 3.67
142 143 7.883217 TGCAACCTAAAATTTTGTATTCCGTA 58.117 30.769 13.76 0.00 0.00 4.02
143 144 6.750148 TGCAACCTAAAATTTTGTATTCCGT 58.250 32.000 13.76 0.00 0.00 4.69
144 145 7.543868 TCATGCAACCTAAAATTTTGTATTCCG 59.456 33.333 13.76 0.00 0.00 4.30
145 146 8.770438 TCATGCAACCTAAAATTTTGTATTCC 57.230 30.769 13.76 0.00 0.00 3.01
147 148 9.995003 TCTTCATGCAACCTAAAATTTTGTATT 57.005 25.926 13.76 2.11 0.00 1.89
148 149 9.995003 TTCTTCATGCAACCTAAAATTTTGTAT 57.005 25.926 13.76 0.00 0.00 2.29
149 150 9.255304 GTTCTTCATGCAACCTAAAATTTTGTA 57.745 29.630 13.76 0.00 0.00 2.41
150 151 7.226523 GGTTCTTCATGCAACCTAAAATTTTGT 59.773 33.333 13.76 0.88 39.30 2.83
151 152 7.307930 GGGTTCTTCATGCAACCTAAAATTTTG 60.308 37.037 13.76 0.22 41.73 2.44
152 153 6.710295 GGGTTCTTCATGCAACCTAAAATTTT 59.290 34.615 8.75 8.75 41.73 1.82
153 154 6.183361 TGGGTTCTTCATGCAACCTAAAATTT 60.183 34.615 16.25 0.00 41.73 1.82
154 155 5.306678 TGGGTTCTTCATGCAACCTAAAATT 59.693 36.000 16.25 0.00 41.73 1.82
155 156 4.837860 TGGGTTCTTCATGCAACCTAAAAT 59.162 37.500 16.25 0.00 41.73 1.82
156 157 4.219115 TGGGTTCTTCATGCAACCTAAAA 58.781 39.130 16.25 3.33 41.73 1.52
157 158 3.838565 TGGGTTCTTCATGCAACCTAAA 58.161 40.909 16.25 5.07 41.73 1.85
158 159 3.517296 TGGGTTCTTCATGCAACCTAA 57.483 42.857 16.25 6.83 41.73 2.69
159 160 3.737559 ATGGGTTCTTCATGCAACCTA 57.262 42.857 16.25 12.68 41.73 3.08
160 161 2.610438 ATGGGTTCTTCATGCAACCT 57.390 45.000 16.25 1.04 41.73 3.50
161 162 3.683365 AAATGGGTTCTTCATGCAACC 57.317 42.857 10.92 10.92 41.35 3.77
162 163 3.996363 GGAAAATGGGTTCTTCATGCAAC 59.004 43.478 0.00 0.00 0.00 4.17
163 164 3.645212 TGGAAAATGGGTTCTTCATGCAA 59.355 39.130 0.00 0.00 0.00 4.08
164 165 3.237746 TGGAAAATGGGTTCTTCATGCA 58.762 40.909 0.00 0.00 0.00 3.96
165 166 3.959535 TGGAAAATGGGTTCTTCATGC 57.040 42.857 0.00 0.00 0.00 4.06
166 167 6.040209 TGAATGGAAAATGGGTTCTTCATG 57.960 37.500 0.00 0.00 0.00 3.07
167 168 6.879367 ATGAATGGAAAATGGGTTCTTCAT 57.121 33.333 0.00 0.00 32.09 2.57
168 169 6.684897 AATGAATGGAAAATGGGTTCTTCA 57.315 33.333 0.00 0.00 30.69 3.02
169 170 7.160726 TCAAATGAATGGAAAATGGGTTCTTC 58.839 34.615 0.00 0.00 0.00 2.87
170 171 7.077050 TCAAATGAATGGAAAATGGGTTCTT 57.923 32.000 0.00 0.00 0.00 2.52
171 172 6.684897 TCAAATGAATGGAAAATGGGTTCT 57.315 33.333 0.00 0.00 0.00 3.01
172 173 7.118245 GTCTTCAAATGAATGGAAAATGGGTTC 59.882 37.037 0.00 0.00 33.01 3.62
173 174 6.936335 GTCTTCAAATGAATGGAAAATGGGTT 59.064 34.615 0.00 0.00 33.01 4.11
174 175 6.466812 GTCTTCAAATGAATGGAAAATGGGT 58.533 36.000 0.00 0.00 33.01 4.51
175 176 5.876460 GGTCTTCAAATGAATGGAAAATGGG 59.124 40.000 0.00 0.00 33.01 4.00
176 177 6.465948 TGGTCTTCAAATGAATGGAAAATGG 58.534 36.000 0.00 0.00 33.01 3.16
177 178 7.658575 AGTTGGTCTTCAAATGAATGGAAAATG 59.341 33.333 0.00 0.00 37.08 2.32
178 179 7.738847 AGTTGGTCTTCAAATGAATGGAAAAT 58.261 30.769 0.00 0.00 37.08 1.82
179 180 7.123355 AGTTGGTCTTCAAATGAATGGAAAA 57.877 32.000 0.00 0.00 37.08 2.29
180 181 6.729690 AGTTGGTCTTCAAATGAATGGAAA 57.270 33.333 0.00 0.00 37.08 3.13
181 182 7.831691 TTAGTTGGTCTTCAAATGAATGGAA 57.168 32.000 0.00 0.00 37.08 3.53
182 183 7.831691 TTTAGTTGGTCTTCAAATGAATGGA 57.168 32.000 0.00 0.00 37.08 3.41
183 184 9.492973 AAATTTAGTTGGTCTTCAAATGAATGG 57.507 29.630 0.00 0.00 38.22 3.16
185 186 8.992073 GCAAATTTAGTTGGTCTTCAAATGAAT 58.008 29.630 0.00 0.00 39.95 2.57
186 187 7.984050 TGCAAATTTAGTTGGTCTTCAAATGAA 59.016 29.630 0.00 0.00 37.08 2.57
187 188 7.495901 TGCAAATTTAGTTGGTCTTCAAATGA 58.504 30.769 0.00 0.00 37.08 2.57
188 189 7.569957 GCTGCAAATTTAGTTGGTCTTCAAATG 60.570 37.037 0.00 0.00 37.08 2.32
189 190 6.424812 GCTGCAAATTTAGTTGGTCTTCAAAT 59.575 34.615 0.00 0.00 37.08 2.32
190 191 5.752955 GCTGCAAATTTAGTTGGTCTTCAAA 59.247 36.000 0.00 0.00 37.08 2.69
191 192 5.288804 GCTGCAAATTTAGTTGGTCTTCAA 58.711 37.500 0.00 0.00 0.00 2.69
192 193 4.261994 GGCTGCAAATTTAGTTGGTCTTCA 60.262 41.667 0.50 0.00 0.00 3.02
193 194 4.021981 AGGCTGCAAATTTAGTTGGTCTTC 60.022 41.667 0.50 0.00 0.00 2.87
194 195 3.897505 AGGCTGCAAATTTAGTTGGTCTT 59.102 39.130 0.50 0.00 0.00 3.01
195 196 3.500343 AGGCTGCAAATTTAGTTGGTCT 58.500 40.909 0.50 0.00 0.00 3.85
196 197 3.942130 AGGCTGCAAATTTAGTTGGTC 57.058 42.857 0.50 0.00 0.00 4.02
197 198 3.640967 TGAAGGCTGCAAATTTAGTTGGT 59.359 39.130 0.50 0.00 0.00 3.67
198 199 4.240096 CTGAAGGCTGCAAATTTAGTTGG 58.760 43.478 0.50 0.00 0.00 3.77
199 200 4.240096 CCTGAAGGCTGCAAATTTAGTTG 58.760 43.478 0.50 0.00 0.00 3.16
200 201 3.897505 ACCTGAAGGCTGCAAATTTAGTT 59.102 39.130 0.50 0.00 39.32 2.24
201 202 3.500343 ACCTGAAGGCTGCAAATTTAGT 58.500 40.909 0.50 0.00 39.32 2.24
202 203 3.426695 CGACCTGAAGGCTGCAAATTTAG 60.427 47.826 0.50 0.00 39.32 1.85
203 204 2.487762 CGACCTGAAGGCTGCAAATTTA 59.512 45.455 0.50 0.00 39.32 1.40
204 205 1.270550 CGACCTGAAGGCTGCAAATTT 59.729 47.619 0.50 0.00 39.32 1.82
205 206 0.883833 CGACCTGAAGGCTGCAAATT 59.116 50.000 0.50 0.00 39.32 1.82
206 207 1.589716 GCGACCTGAAGGCTGCAAAT 61.590 55.000 0.50 0.00 38.19 2.32
207 208 2.260869 GCGACCTGAAGGCTGCAAA 61.261 57.895 0.50 0.00 38.19 3.68
208 209 2.669569 GCGACCTGAAGGCTGCAA 60.670 61.111 0.50 0.00 38.19 4.08
209 210 4.704833 GGCGACCTGAAGGCTGCA 62.705 66.667 13.52 0.00 39.53 4.41
210 211 3.984193 ATGGCGACCTGAAGGCTGC 62.984 63.158 0.00 0.45 39.32 5.25
211 212 1.817099 GATGGCGACCTGAAGGCTG 60.817 63.158 0.00 0.00 39.32 4.85
212 213 1.841302 TTGATGGCGACCTGAAGGCT 61.841 55.000 0.00 0.00 39.32 4.58
213 214 1.372087 CTTGATGGCGACCTGAAGGC 61.372 60.000 0.00 0.00 39.32 4.35
214 215 0.250234 TCTTGATGGCGACCTGAAGG 59.750 55.000 0.00 0.00 42.17 3.46
215 216 1.066573 AGTCTTGATGGCGACCTGAAG 60.067 52.381 0.00 0.00 0.00 3.02
216 217 0.976641 AGTCTTGATGGCGACCTGAA 59.023 50.000 0.00 0.00 0.00 3.02
217 218 1.847328 TAGTCTTGATGGCGACCTGA 58.153 50.000 0.00 0.00 0.00 3.86
218 219 2.898729 ATAGTCTTGATGGCGACCTG 57.101 50.000 0.00 0.00 0.00 4.00
219 220 3.833732 TCTATAGTCTTGATGGCGACCT 58.166 45.455 0.00 0.00 0.00 3.85
220 221 4.278669 TCTTCTATAGTCTTGATGGCGACC 59.721 45.833 0.00 0.00 0.00 4.79
221 222 5.216648 GTCTTCTATAGTCTTGATGGCGAC 58.783 45.833 0.00 0.00 0.00 5.19
222 223 4.887655 TGTCTTCTATAGTCTTGATGGCGA 59.112 41.667 0.00 0.00 0.00 5.54
223 224 5.188327 TGTCTTCTATAGTCTTGATGGCG 57.812 43.478 0.00 0.00 0.00 5.69
224 225 6.648725 GGAATGTCTTCTATAGTCTTGATGGC 59.351 42.308 0.00 0.00 0.00 4.40
225 226 7.730084 TGGAATGTCTTCTATAGTCTTGATGG 58.270 38.462 0.00 0.00 0.00 3.51
226 227 9.775854 AATGGAATGTCTTCTATAGTCTTGATG 57.224 33.333 0.00 0.00 31.96 3.07
227 228 9.775854 CAATGGAATGTCTTCTATAGTCTTGAT 57.224 33.333 0.00 0.00 31.96 2.57
228 229 8.762645 ACAATGGAATGTCTTCTATAGTCTTGA 58.237 33.333 0.00 0.00 31.96 3.02
229 230 8.824781 CACAATGGAATGTCTTCTATAGTCTTG 58.175 37.037 0.00 0.00 31.96 3.02
230 231 8.762645 TCACAATGGAATGTCTTCTATAGTCTT 58.237 33.333 0.00 0.00 31.96 3.01
231 232 8.311395 TCACAATGGAATGTCTTCTATAGTCT 57.689 34.615 0.00 0.00 31.96 3.24
232 233 8.948631 TTCACAATGGAATGTCTTCTATAGTC 57.051 34.615 0.00 0.00 31.96 2.59
233 234 7.497249 GCTTCACAATGGAATGTCTTCTATAGT 59.503 37.037 0.00 0.00 31.96 2.12
234 235 7.714377 AGCTTCACAATGGAATGTCTTCTATAG 59.286 37.037 0.00 0.00 31.96 1.31
235 236 7.568349 AGCTTCACAATGGAATGTCTTCTATA 58.432 34.615 0.00 0.00 31.96 1.31
236 237 6.421485 AGCTTCACAATGGAATGTCTTCTAT 58.579 36.000 0.00 0.00 34.35 1.98
249 250 4.037208 AGTTGGTCTTCAAGCTTCACAATG 59.963 41.667 0.00 0.00 35.80 2.82
286 288 5.748630 CGATTACAGTGCTGCTCAATAACTA 59.251 40.000 0.00 0.00 0.00 2.24
296 298 0.519175 CGTTGCGATTACAGTGCTGC 60.519 55.000 0.00 0.00 0.00 5.25
327 329 1.203523 CTAGGTGACCACTGACTCAGC 59.796 57.143 3.63 0.00 34.37 4.26
345 347 3.740631 ATCGATCATGTGCTGCTTCTA 57.259 42.857 0.00 0.00 0.00 2.10
368 370 1.127343 TGGGTATCATGGACGCATGA 58.873 50.000 12.35 7.97 44.54 3.07
369 371 2.189594 ATGGGTATCATGGACGCATG 57.810 50.000 21.94 0.00 45.58 4.06
378 380 0.108585 GCGGTCCACATGGGTATCAT 59.891 55.000 0.00 0.00 38.11 2.45
379 381 1.268283 TGCGGTCCACATGGGTATCA 61.268 55.000 0.00 0.00 38.11 2.15
380 382 0.108585 ATGCGGTCCACATGGGTATC 59.891 55.000 0.00 0.00 38.11 2.24
396 1400 4.211389 CACCAAATATCGCTTTCGTATGC 58.789 43.478 0.00 0.00 36.96 3.14
401 1405 7.696453 AGAAATTTACACCAAATATCGCTTTCG 59.304 33.333 0.00 0.00 35.74 3.46
413 1419 4.219115 TGGAGGCAAGAAATTTACACCAA 58.781 39.130 0.00 0.00 0.00 3.67
436 1442 3.707316 CCCCAGAGAGAGAAAGAGAAGA 58.293 50.000 0.00 0.00 0.00 2.87
440 1446 1.566211 TGCCCCAGAGAGAGAAAGAG 58.434 55.000 0.00 0.00 0.00 2.85
445 1451 1.734655 ACTTTTGCCCCAGAGAGAGA 58.265 50.000 0.00 0.00 0.00 3.10
446 1452 2.575805 AACTTTTGCCCCAGAGAGAG 57.424 50.000 0.00 0.00 0.00 3.20
447 1453 3.312736 AAAACTTTTGCCCCAGAGAGA 57.687 42.857 0.00 0.00 0.00 3.10
469 1475 2.227194 GCCCCAGAGAGTTTCGAAAAA 58.773 47.619 13.10 0.00 0.00 1.94
470 1476 1.142060 TGCCCCAGAGAGTTTCGAAAA 59.858 47.619 13.10 0.00 0.00 2.29
471 1477 0.762418 TGCCCCAGAGAGTTTCGAAA 59.238 50.000 6.47 6.47 0.00 3.46
472 1478 0.762418 TTGCCCCAGAGAGTTTCGAA 59.238 50.000 0.00 0.00 0.00 3.71
473 1479 0.762418 TTTGCCCCAGAGAGTTTCGA 59.238 50.000 0.00 0.00 0.00 3.71
474 1480 1.537202 CTTTTGCCCCAGAGAGTTTCG 59.463 52.381 0.00 0.00 0.00 3.46
475 1481 2.587522 ACTTTTGCCCCAGAGAGTTTC 58.412 47.619 0.00 0.00 0.00 2.78
476 1482 2.755952 ACTTTTGCCCCAGAGAGTTT 57.244 45.000 0.00 0.00 0.00 2.66
477 1483 2.553247 GCTACTTTTGCCCCAGAGAGTT 60.553 50.000 0.00 0.00 0.00 3.01
478 1484 1.003696 GCTACTTTTGCCCCAGAGAGT 59.996 52.381 0.00 0.00 0.00 3.24
496 1502 1.847798 TACCGAATGCAGGGTTGGCT 61.848 55.000 11.57 0.00 37.75 4.75
501 1507 1.905512 GGTCTACCGAATGCAGGGT 59.094 57.895 11.15 11.15 40.35 4.34
579 1585 1.289380 GCGTGTCTCTTCCCTTCGT 59.711 57.895 0.00 0.00 0.00 3.85
581 1587 0.603569 TCTGCGTGTCTCTTCCCTTC 59.396 55.000 0.00 0.00 0.00 3.46
722 1736 1.069358 CAAGATAGGAAGACCGGAGCC 59.931 57.143 9.46 3.16 41.83 4.70
723 1737 1.757699 ACAAGATAGGAAGACCGGAGC 59.242 52.381 9.46 0.00 41.83 4.70
724 1738 2.362717 GGACAAGATAGGAAGACCGGAG 59.637 54.545 9.46 0.00 41.83 4.63
725 1739 2.291996 TGGACAAGATAGGAAGACCGGA 60.292 50.000 9.46 0.00 41.83 5.14
726 1740 2.101582 CTGGACAAGATAGGAAGACCGG 59.898 54.545 0.00 0.00 41.83 5.28
727 1741 3.024547 TCTGGACAAGATAGGAAGACCG 58.975 50.000 0.00 0.00 41.83 4.79
728 1742 4.651503 TGATCTGGACAAGATAGGAAGACC 59.348 45.833 0.00 0.00 46.12 3.85
784 1798 6.894339 TTCAGTGTGTGATCTTGAGTACTA 57.106 37.500 0.00 0.00 34.17 1.82
785 1799 5.791336 TTCAGTGTGTGATCTTGAGTACT 57.209 39.130 0.00 0.00 34.17 2.73
786 1800 5.107298 GCTTTCAGTGTGTGATCTTGAGTAC 60.107 44.000 0.00 0.00 34.17 2.73
821 1835 0.103208 CGCCTGCTCGTCTAGGAATT 59.897 55.000 0.00 0.00 36.11 2.17
838 1852 2.887568 CGGAGGTGATGAGTGCGC 60.888 66.667 0.00 0.00 0.00 6.09
889 2008 3.570926 TCTCGTGACCAGTATTGTGTC 57.429 47.619 1.55 1.55 0.00 3.67
915 2034 4.072839 CTCTTTTAGTGGGGTTTCTGTCC 58.927 47.826 0.00 0.00 0.00 4.02
921 2040 1.203137 GGGGCTCTTTTAGTGGGGTTT 60.203 52.381 0.00 0.00 0.00 3.27
990 2117 1.028130 GCCTAGGCATCTTTTCTGGC 58.972 55.000 29.33 0.00 41.49 4.85
1031 2161 2.039084 GTGGAGAGCAAGGGAAGAAGAA 59.961 50.000 0.00 0.00 0.00 2.52
1032 2162 1.625818 GTGGAGAGCAAGGGAAGAAGA 59.374 52.381 0.00 0.00 0.00 2.87
1033 2163 1.627834 AGTGGAGAGCAAGGGAAGAAG 59.372 52.381 0.00 0.00 0.00 2.85
1218 2357 3.509137 GACGGTCTTGTCGGTGGCA 62.509 63.158 0.00 0.00 0.00 4.92
1259 2398 3.636231 CCTGGGCGTTCACTGGGA 61.636 66.667 0.00 0.00 0.00 4.37
1260 2399 4.722700 CCCTGGGCGTTCACTGGG 62.723 72.222 0.00 0.00 39.12 4.45
1271 2410 1.204113 GGATATCCTGGAGCCCTGGG 61.204 65.000 14.97 8.86 42.03 4.45
1623 2763 2.494918 CTAGTCCGGCCGTTCTGG 59.505 66.667 26.12 18.72 42.90 3.86
1803 2943 1.985159 TGCCCTGTGATACTCCAGTTT 59.015 47.619 0.00 0.00 0.00 2.66
1830 2970 1.469703 TGCACATAACACATCTGCTGC 59.530 47.619 0.00 0.00 0.00 5.25
3060 4208 5.123820 GCTGTAAACATCTACCTTTGCATCA 59.876 40.000 0.00 0.00 0.00 3.07
3145 4293 3.031013 TCAAGCCCATCTCATCTTCGTA 58.969 45.455 0.00 0.00 0.00 3.43
3249 4397 0.846015 TATCCAGGTCAGCCCCATTG 59.154 55.000 0.00 0.00 34.57 2.82
3375 4523 4.773674 TCCATGAGATTTCTGGCAATTTGT 59.226 37.500 0.00 0.00 0.00 2.83
3467 4615 6.469782 TTTTTCTCTTCTGATGCCTTGTTT 57.530 33.333 0.00 0.00 0.00 2.83
3578 4729 7.973944 GTGAGGATACCAACCACAATTTAAATC 59.026 37.037 0.10 0.00 30.75 2.17
3582 4733 5.882040 TGTGAGGATACCAACCACAATTTA 58.118 37.500 0.00 0.00 35.16 1.40
3624 4775 2.125106 GCTGCACCTAACTCCCCG 60.125 66.667 0.00 0.00 0.00 5.73
3682 4833 9.189156 ACCATTATCAAAACAGTTATAGCATGT 57.811 29.630 0.00 0.00 0.00 3.21
3733 4884 8.399328 CAATTTGAATAACGTAACGCATTATCG 58.601 33.333 0.00 0.00 0.00 2.92
3745 4896 6.483974 TGTACCAGACACAATTTGAATAACGT 59.516 34.615 2.79 0.00 31.20 3.99
3831 4982 5.532406 GCTGCTCTAGAGATCCATATCTAGG 59.468 48.000 24.24 9.15 44.67 3.02
3846 4997 1.526041 GAACATGATGCGCTGCTCTAG 59.474 52.381 9.73 2.90 0.00 2.43
3860 5014 2.097466 GCAACCGGTATGGAAGAACATG 59.903 50.000 8.00 0.00 42.00 3.21
3895 5049 2.486191 CCCTGGCTACTGGCTTATGAAG 60.486 54.545 0.00 0.00 41.46 3.02
3936 5090 3.273434 CTGCTAATCTTGGCTAAGTGCA 58.727 45.455 9.87 13.80 45.15 4.57
3942 5096 1.559219 TGGCACTGCTAATCTTGGCTA 59.441 47.619 0.00 0.00 35.49 3.93
3987 5141 2.283529 CCTGGCGGTCCACTAGTGT 61.284 63.158 21.18 0.00 37.47 3.55
3997 5151 1.821666 AGTTTGCATAAACCTGGCGGT 60.822 47.619 0.00 0.00 45.77 5.68
4011 5165 1.202891 ACAGGGGGTAAGTCAGTTTGC 60.203 52.381 0.00 0.00 0.00 3.68
4054 5209 5.359194 ACAGCCTATACTGCATAGTGTTT 57.641 39.130 0.00 0.00 41.60 2.83
4083 5238 3.495670 TGGTTTATTATGTGCCGCAAC 57.504 42.857 0.00 0.00 0.00 4.17
4160 5315 6.424812 TCTCACACATTACAACATTCTCACAG 59.575 38.462 0.00 0.00 0.00 3.66
4226 5383 5.649782 AGCCACTTCATATGTTCAAAAGG 57.350 39.130 1.90 0.00 0.00 3.11
4322 5562 5.360714 TCAATAATTTCTGGGCACTTCCATC 59.639 40.000 0.00 0.00 36.05 3.51
4350 5590 8.152309 CAAGGGCATTGTTCATTTTTAGAAAA 57.848 30.769 3.26 0.00 33.95 2.29
4351 5591 7.727331 CAAGGGCATTGTTCATTTTTAGAAA 57.273 32.000 3.26 0.00 33.95 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.