Multiple sequence alignment - TraesCS3B01G272200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G272200 chr3B 100.000 5096 0 0 1 5096 438383220 438378125 0.000000e+00 9411.0
1 TraesCS3B01G272200 chr3A 91.859 3427 145 52 1 3351 465224424 465227792 0.000000e+00 4660.0
2 TraesCS3B01G272200 chr3A 93.683 1124 43 16 3391 4500 465227849 465228958 0.000000e+00 1657.0
3 TraesCS3B01G272200 chr3A 89.939 328 28 3 4770 5095 465228953 465229277 7.890000e-113 418.0
4 TraesCS3B01G272200 chr3D 95.326 2760 81 19 194 2930 339477382 339474648 0.000000e+00 4338.0
5 TraesCS3B01G272200 chr3D 95.196 1124 33 14 3391 4500 339474191 339473075 0.000000e+00 1757.0
6 TraesCS3B01G272200 chr3D 92.468 385 22 4 2971 3351 339474635 339474254 1.250000e-150 544.0
7 TraesCS3B01G272200 chr3D 92.097 329 22 2 4770 5096 339473080 339472754 1.290000e-125 460.0
8 TraesCS3B01G272200 chr3D 88.043 184 16 3 1 180 339477768 339477587 4.000000e-51 213.0
9 TraesCS3B01G272200 chr5A 99.283 279 2 0 4495 4773 437290804 437291082 5.890000e-139 505.0
10 TraesCS3B01G272200 chr1B 99.283 279 2 0 4494 4772 13065127 13064849 5.890000e-139 505.0
11 TraesCS3B01G272200 chr1B 98.921 278 3 0 4495 4772 593922516 593922793 9.850000e-137 497.0
12 TraesCS3B01G272200 chr1B 87.736 212 23 2 1345 1553 652782336 652782547 1.420000e-60 244.0
13 TraesCS3B01G272200 chr6A 99.635 274 1 0 4497 4770 502928586 502928313 7.620000e-138 501.0
14 TraesCS3B01G272200 chr6A 98.925 279 3 0 4494 4772 199590022 199590300 2.740000e-137 499.0
15 TraesCS3B01G272200 chr6B 98.246 285 5 0 4488 4772 707744111 707744395 2.740000e-137 499.0
16 TraesCS3B01G272200 chr2B 97.902 286 5 1 4487 4772 27587015 27587299 1.270000e-135 494.0
17 TraesCS3B01G272200 chr2B 78.161 174 36 2 1355 1527 81755685 81755857 5.390000e-20 110.0
18 TraesCS3B01G272200 chr2A 97.251 291 6 2 4484 4772 36414641 36414931 4.580000e-135 492.0
19 TraesCS3B01G272200 chr2A 96.928 293 8 1 4481 4773 640268146 640267855 1.650000e-134 490.0
20 TraesCS3B01G272200 chr2A 78.161 174 36 2 1355 1527 53782753 53782925 5.390000e-20 110.0
21 TraesCS3B01G272200 chr1A 87.736 212 23 2 1345 1553 563819050 563819261 1.420000e-60 244.0
22 TraesCS3B01G272200 chr1D 86.161 224 28 3 1345 1566 470220191 470220413 6.590000e-59 239.0
23 TraesCS3B01G272200 chr2D 78.736 174 35 2 1355 1527 52227343 52227515 1.160000e-21 115.0
24 TraesCS3B01G272200 chr4D 77.640 161 34 2 1355 1514 306795500 306795659 4.200000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G272200 chr3B 438378125 438383220 5095 True 9411.0 9411 100.000 1 5096 1 chr3B.!!$R1 5095
1 TraesCS3B01G272200 chr3A 465224424 465229277 4853 False 2245.0 4660 91.827 1 5095 3 chr3A.!!$F1 5094
2 TraesCS3B01G272200 chr3D 339472754 339477768 5014 True 1462.4 4338 92.626 1 5096 5 chr3D.!!$R1 5095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 1112 0.107459 CAGCAAGGGGAGAGGCTTAC 60.107 60.000 0.0 0.0 33.60 2.34 F
1308 1560 4.381932 GGGGTCAAATTGATTAACTGCTGG 60.382 45.833 0.0 0.0 0.00 4.85 F
2931 3185 0.249238 GAGCTGTACTCCATGAGCGG 60.249 60.000 0.0 0.0 39.75 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1700 1952 1.084370 GTTTGCTGGATCCGGACGAG 61.084 60.0 25.54 8.27 0.00 4.18 R
3236 3518 0.736636 CAATGTGCGCATGACCAGAT 59.263 50.0 15.91 0.00 35.15 2.90 R
4611 4959 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.0 0.00 0.00 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.421249 TGGTTCTTATCCTTCACATTTCAAAT 57.579 30.769 0.00 0.00 0.00 2.32
42 44 8.937884 CATTTCAAATGAAAATAAGCATGACCA 58.062 29.630 12.17 0.00 45.81 4.02
52 54 3.610040 AAGCATGACCACGACTCAATA 57.390 42.857 0.00 0.00 0.00 1.90
104 109 3.517500 ACATCTCTTTTGAGGGGTCTCTC 59.482 47.826 0.00 0.00 46.22 3.20
105 110 2.171840 TCTCTTTTGAGGGGTCTCTCG 58.828 52.381 0.00 0.00 46.22 4.04
111 116 6.134055 TCTTTTGAGGGGTCTCTCGATATTA 58.866 40.000 0.00 0.00 40.58 0.98
120 125 8.754080 AGGGGTCTCTCGATATTATAATTGAAG 58.246 37.037 2.68 0.00 0.00 3.02
291 488 0.587768 CACTGCACGCACAAATCTCA 59.412 50.000 0.00 0.00 0.00 3.27
314 511 8.748380 TCAAATTCGACATGCATATAGTAGAG 57.252 34.615 0.00 0.00 0.00 2.43
320 517 8.476657 TCGACATGCATATAGTAGAGTAGTAC 57.523 38.462 0.00 0.00 0.00 2.73
365 562 3.443976 GTTTCATTCGTTTTGTGCAGGT 58.556 40.909 0.00 0.00 0.00 4.00
436 638 1.445410 GCACGCACACCACGATCTA 60.445 57.895 0.00 0.00 0.00 1.98
472 674 2.230508 CACTAACAGTAACGGAGGCAGA 59.769 50.000 0.00 0.00 0.00 4.26
542 744 2.289565 GCTTGTCATACCTAGGGCAAC 58.710 52.381 14.81 6.33 0.00 4.17
729 936 4.074526 GAGAGGCCGTGCTGCTCA 62.075 66.667 0.00 0.00 32.35 4.26
850 1062 3.181480 TGCTTTGCTAGTGGGTGAAAAAC 60.181 43.478 0.00 0.00 0.00 2.43
851 1063 3.068165 GCTTTGCTAGTGGGTGAAAAACT 59.932 43.478 0.00 0.00 0.00 2.66
899 1112 0.107459 CAGCAAGGGGAGAGGCTTAC 60.107 60.000 0.00 0.00 33.60 2.34
1099 1342 4.758251 CGCAGCCCGACATGACCA 62.758 66.667 0.00 0.00 40.02 4.02
1308 1560 4.381932 GGGGTCAAATTGATTAACTGCTGG 60.382 45.833 0.00 0.00 0.00 4.85
1700 1952 2.754658 TCTTCCTCCTCCGACCGC 60.755 66.667 0.00 0.00 0.00 5.68
1827 2079 1.972198 CACTACCAGTTCGGCCTGA 59.028 57.895 0.00 0.00 39.03 3.86
1848 2100 4.609018 AGCACGCCGTGTCTGCTT 62.609 61.111 19.57 0.00 38.07 3.91
1855 2107 2.811317 CGTGTCTGCTTCGGCTCC 60.811 66.667 0.00 0.00 42.37 4.70
1994 2246 3.195002 CAGTACATGCCCGTGCCG 61.195 66.667 0.00 0.00 36.33 5.69
2061 2313 2.029288 CTCTGCAACGACGTGGCAT 61.029 57.895 29.10 0.00 41.99 4.40
2126 2378 1.004277 GGGCTTGGTCAATACTGGTCA 59.996 52.381 0.00 0.00 0.00 4.02
2298 2550 1.288127 GCTGCTGTTTTGCCTCCTG 59.712 57.895 0.00 0.00 0.00 3.86
2387 2639 2.519302 GCAACCACTGCCACCACT 60.519 61.111 0.00 0.00 46.13 4.00
2625 2879 1.554617 GCCCATTGCCATTGTTTAGGT 59.445 47.619 0.00 0.00 0.00 3.08
2626 2880 2.763448 GCCCATTGCCATTGTTTAGGTA 59.237 45.455 0.00 0.00 0.00 3.08
2689 2943 2.088950 GCATGAGGCAGTGCAAATTT 57.911 45.000 18.61 0.00 43.97 1.82
2706 2960 2.246091 TTTCCTTTAGGGCCCCAATG 57.754 50.000 21.43 13.93 35.41 2.82
2735 2989 2.288579 CCAGCGTAAGGGCATATCGTAA 60.289 50.000 0.00 0.00 38.28 3.18
2752 3006 2.433436 GTAAGGTTTGACGATTGGGCT 58.567 47.619 0.00 0.00 0.00 5.19
2930 3184 0.457443 TGAGCTGTACTCCATGAGCG 59.543 55.000 0.00 0.00 45.61 5.03
2931 3185 0.249238 GAGCTGTACTCCATGAGCGG 60.249 60.000 0.00 0.00 39.75 5.52
2932 3186 1.227380 GCTGTACTCCATGAGCGGG 60.227 63.158 0.00 0.00 32.04 6.13
2933 3187 1.443407 CTGTACTCCATGAGCGGGG 59.557 63.158 0.00 0.00 32.04 5.73
2948 3229 3.223589 GGGGGAGAGAGAGCGAGC 61.224 72.222 0.00 0.00 0.00 5.03
2952 3233 2.327940 GAGAGAGAGCGAGCGAGC 59.672 66.667 0.00 0.00 37.41 5.03
3148 3429 4.015084 AGACTTGAAGGAATGGAAGCATG 58.985 43.478 0.00 0.00 0.00 4.06
3226 3508 6.095580 AGTGCTTAGTTATCGAAGATGTGAGA 59.904 38.462 0.00 0.00 45.12 3.27
3236 3518 4.082026 TCGAAGATGTGAGAAGCAGATTGA 60.082 41.667 0.00 0.00 29.35 2.57
3254 3536 1.019673 GATCTGGTCATGCGCACATT 58.980 50.000 14.90 0.00 32.87 2.71
3255 3537 0.736636 ATCTGGTCATGCGCACATTG 59.263 50.000 14.90 7.92 32.87 2.82
3256 3538 0.606130 TCTGGTCATGCGCACATTGT 60.606 50.000 14.90 0.00 32.87 2.71
3257 3539 0.455464 CTGGTCATGCGCACATTGTG 60.455 55.000 14.90 12.54 32.87 3.33
3292 3578 5.486735 TCAAGTGGAAAATACCCTCGTAA 57.513 39.130 0.00 0.00 0.00 3.18
3310 3596 5.872635 TCGTAATACGTGTGAAAGGAGTAG 58.127 41.667 12.78 0.00 43.14 2.57
3320 3606 6.591834 CGTGTGAAAGGAGTAGAATTTGATCT 59.408 38.462 0.00 0.00 0.00 2.75
3323 3609 8.324306 TGTGAAAGGAGTAGAATTTGATCTGAT 58.676 33.333 0.00 0.00 0.00 2.90
3331 3617 7.281098 AGTAGAATTTGATCTGATGCTGACAT 58.719 34.615 0.00 0.00 39.98 3.06
3340 3626 6.268387 TGATCTGATGCTGACATATTAGTGGA 59.732 38.462 0.00 0.00 36.35 4.02
3342 3628 6.461640 TCTGATGCTGACATATTAGTGGATG 58.538 40.000 0.00 0.00 36.35 3.51
3348 3634 7.940688 ATGCTGACATATTAGTGGATGAAATCA 59.059 33.333 0.00 0.00 39.11 2.57
3424 3757 3.057315 GCCACACAACTCATAAATGTGCT 60.057 43.478 5.14 0.00 46.42 4.40
3427 3760 5.048504 CCACACAACTCATAAATGTGCTTCT 60.049 40.000 5.14 0.00 46.42 2.85
3439 3772 3.394674 TGTGCTTCTTTCGTATGGTCA 57.605 42.857 0.00 0.00 0.00 4.02
3458 3791 1.069703 CATGTCACGGCAACTTGTCTG 60.070 52.381 0.00 0.00 37.10 3.51
3473 3806 6.857777 ACTTGTCTGTCATCAAGAGAAAAG 57.142 37.500 18.52 0.00 44.57 2.27
3481 3814 5.014544 TGTCATCAAGAGAAAAGGGAGGAAT 59.985 40.000 0.00 0.00 0.00 3.01
3572 3908 3.244345 CGTACGTTGCTGAAAAGACTGAA 59.756 43.478 7.22 0.00 0.00 3.02
3600 3936 0.811281 CGGTCAAATTTCCTCCTGCC 59.189 55.000 0.00 0.00 0.00 4.85
3601 3937 1.186200 GGTCAAATTTCCTCCTGCCC 58.814 55.000 0.00 0.00 0.00 5.36
3742 4082 2.203084 TTTCGCAAGTCACGGGCA 60.203 55.556 0.00 0.00 39.48 5.36
4238 4585 5.680594 TCGTATTGGAAAAGGGCTACTAA 57.319 39.130 0.00 0.00 0.00 2.24
4273 4620 4.739046 AAGCTATTATCGCATGCTTGTC 57.261 40.909 17.13 0.00 41.61 3.18
4296 4643 3.994392 AGCAGTGATCGTGTCGTTTATTT 59.006 39.130 0.00 0.00 0.00 1.40
4448 4796 1.409790 TGTGTTGGTACTGCACGTACT 59.590 47.619 19.22 0.00 46.19 2.73
4454 4802 4.365899 TGGTACTGCACGTACTATCAAG 57.634 45.455 19.22 0.00 46.19 3.02
4500 4848 3.507622 GCCAATGAACTTCAAGTTAGGCT 59.492 43.478 20.22 0.00 38.80 4.58
4502 4850 4.082571 CCAATGAACTTCAAGTTAGGCTGG 60.083 45.833 1.74 4.47 38.80 4.85
4504 4852 3.740115 TGAACTTCAAGTTAGGCTGGTC 58.260 45.455 1.74 0.00 38.80 4.02
4505 4853 3.135712 TGAACTTCAAGTTAGGCTGGTCA 59.864 43.478 1.74 0.00 38.80 4.02
4506 4854 3.127425 ACTTCAAGTTAGGCTGGTCAC 57.873 47.619 0.00 0.00 0.00 3.67
4507 4855 2.438021 ACTTCAAGTTAGGCTGGTCACA 59.562 45.455 0.00 0.00 0.00 3.58
4508 4856 4.984006 AACTTCAAGTTAGGCTGGTCACAG 60.984 45.833 0.00 0.00 41.24 3.66
4509 4857 2.047061 TCAAGTTAGGCTGGTCACAGT 58.953 47.619 0.00 0.00 46.62 3.55
4510 4858 2.146342 CAAGTTAGGCTGGTCACAGTG 58.854 52.381 0.00 0.00 46.62 3.66
4511 4859 0.687354 AGTTAGGCTGGTCACAGTGG 59.313 55.000 0.00 0.00 46.62 4.00
4512 4860 0.321653 GTTAGGCTGGTCACAGTGGG 60.322 60.000 0.00 0.00 46.62 4.61
4513 4861 1.488705 TTAGGCTGGTCACAGTGGGG 61.489 60.000 0.00 0.00 46.62 4.96
4514 4862 2.395180 TAGGCTGGTCACAGTGGGGA 62.395 60.000 0.00 0.00 46.62 4.81
4515 4863 2.348998 GCTGGTCACAGTGGGGAG 59.651 66.667 0.00 0.00 46.62 4.30
4516 4864 3.072476 CTGGTCACAGTGGGGAGG 58.928 66.667 0.00 0.00 39.92 4.30
4517 4865 1.536418 CTGGTCACAGTGGGGAGGA 60.536 63.158 0.00 0.00 39.92 3.71
4518 4866 1.074090 TGGTCACAGTGGGGAGGAA 60.074 57.895 0.00 0.00 0.00 3.36
4519 4867 1.375326 GGTCACAGTGGGGAGGAAC 59.625 63.158 0.00 0.00 0.00 3.62
4521 4869 0.765510 GTCACAGTGGGGAGGAACTT 59.234 55.000 0.00 0.00 41.55 2.66
4522 4870 1.975680 GTCACAGTGGGGAGGAACTTA 59.024 52.381 0.00 0.00 41.55 2.24
4523 4871 2.028020 GTCACAGTGGGGAGGAACTTAG 60.028 54.545 0.00 0.00 41.55 2.18
4524 4872 1.279271 CACAGTGGGGAGGAACTTAGG 59.721 57.143 0.00 0.00 41.55 2.69
4525 4873 1.151413 ACAGTGGGGAGGAACTTAGGA 59.849 52.381 0.00 0.00 41.55 2.94
4526 4874 1.834263 CAGTGGGGAGGAACTTAGGAG 59.166 57.143 0.00 0.00 41.55 3.69
4527 4875 1.437547 AGTGGGGAGGAACTTAGGAGT 59.562 52.381 0.00 0.00 41.55 3.85
4528 4876 2.658489 AGTGGGGAGGAACTTAGGAGTA 59.342 50.000 0.00 0.00 41.55 2.59
4529 4877 3.078612 AGTGGGGAGGAACTTAGGAGTAA 59.921 47.826 0.00 0.00 41.55 2.24
4530 4878 3.197333 GTGGGGAGGAACTTAGGAGTAAC 59.803 52.174 0.00 0.00 41.55 2.50
4531 4879 3.181404 TGGGGAGGAACTTAGGAGTAACA 60.181 47.826 0.00 0.00 41.55 2.41
4532 4880 4.038633 GGGGAGGAACTTAGGAGTAACAT 58.961 47.826 0.00 0.00 41.55 2.71
4533 4881 4.101274 GGGGAGGAACTTAGGAGTAACATC 59.899 50.000 0.00 0.00 41.55 3.06
4534 4882 4.715297 GGGAGGAACTTAGGAGTAACATCA 59.285 45.833 0.00 0.00 41.55 3.07
4535 4883 5.395435 GGGAGGAACTTAGGAGTAACATCAC 60.395 48.000 0.00 0.00 41.55 3.06
4536 4884 5.187186 GGAGGAACTTAGGAGTAACATCACA 59.813 44.000 0.00 0.00 41.55 3.58
4537 4885 6.038997 AGGAACTTAGGAGTAACATCACAC 57.961 41.667 0.00 0.00 34.21 3.82
4538 4886 5.542635 AGGAACTTAGGAGTAACATCACACA 59.457 40.000 0.00 0.00 34.21 3.72
4539 4887 5.638234 GGAACTTAGGAGTAACATCACACAC 59.362 44.000 0.00 0.00 34.21 3.82
4540 4888 6.420913 AACTTAGGAGTAACATCACACACT 57.579 37.500 0.00 0.00 34.21 3.55
4541 4889 6.026947 ACTTAGGAGTAACATCACACACTC 57.973 41.667 0.00 0.00 37.32 3.51
4547 4895 6.648725 GAGTAACATCACACACTCCAATAC 57.351 41.667 0.00 0.00 32.93 1.89
4548 4896 6.109156 AGTAACATCACACACTCCAATACA 57.891 37.500 0.00 0.00 0.00 2.29
4549 4897 6.530120 AGTAACATCACACACTCCAATACAA 58.470 36.000 0.00 0.00 0.00 2.41
4550 4898 7.168219 AGTAACATCACACACTCCAATACAAT 58.832 34.615 0.00 0.00 0.00 2.71
4551 4899 6.899393 AACATCACACACTCCAATACAATT 57.101 33.333 0.00 0.00 0.00 2.32
4552 4900 6.899393 ACATCACACACTCCAATACAATTT 57.101 33.333 0.00 0.00 0.00 1.82
4553 4901 7.288810 ACATCACACACTCCAATACAATTTT 57.711 32.000 0.00 0.00 0.00 1.82
4554 4902 7.147312 ACATCACACACTCCAATACAATTTTG 58.853 34.615 0.00 0.00 0.00 2.44
4555 4903 5.527951 TCACACACTCCAATACAATTTTGC 58.472 37.500 0.00 0.00 0.00 3.68
4556 4904 5.301551 TCACACACTCCAATACAATTTTGCT 59.698 36.000 0.00 0.00 0.00 3.91
4557 4905 5.984926 CACACACTCCAATACAATTTTGCTT 59.015 36.000 0.00 0.00 0.00 3.91
4558 4906 7.013750 TCACACACTCCAATACAATTTTGCTTA 59.986 33.333 0.00 0.00 0.00 3.09
4559 4907 7.814107 CACACACTCCAATACAATTTTGCTTAT 59.186 33.333 0.00 0.00 0.00 1.73
4560 4908 7.814107 ACACACTCCAATACAATTTTGCTTATG 59.186 33.333 0.00 0.00 0.00 1.90
4561 4909 7.814107 CACACTCCAATACAATTTTGCTTATGT 59.186 33.333 0.00 0.00 0.00 2.29
4562 4910 7.814107 ACACTCCAATACAATTTTGCTTATGTG 59.186 33.333 0.00 0.00 0.00 3.21
4563 4911 7.276218 CACTCCAATACAATTTTGCTTATGTGG 59.724 37.037 0.00 0.00 0.00 4.17
4564 4912 6.105333 TCCAATACAATTTTGCTTATGTGGC 58.895 36.000 0.00 0.00 0.00 5.01
4565 4913 5.873712 CCAATACAATTTTGCTTATGTGGCA 59.126 36.000 0.00 0.00 37.97 4.92
4566 4914 6.539464 CCAATACAATTTTGCTTATGTGGCAT 59.461 34.615 0.00 0.00 39.54 4.40
4567 4915 7.403421 CAATACAATTTTGCTTATGTGGCATG 58.597 34.615 0.00 0.00 39.54 4.06
4568 4916 4.897140 ACAATTTTGCTTATGTGGCATGT 58.103 34.783 0.00 0.00 39.54 3.21
4569 4917 6.035368 ACAATTTTGCTTATGTGGCATGTA 57.965 33.333 0.00 0.00 39.54 2.29
4570 4918 6.642430 ACAATTTTGCTTATGTGGCATGTAT 58.358 32.000 0.00 0.00 39.54 2.29
4571 4919 7.104939 ACAATTTTGCTTATGTGGCATGTATT 58.895 30.769 0.00 0.00 39.54 1.89
4572 4920 7.607223 ACAATTTTGCTTATGTGGCATGTATTT 59.393 29.630 0.00 0.00 39.54 1.40
4573 4921 9.096160 CAATTTTGCTTATGTGGCATGTATTTA 57.904 29.630 0.00 0.00 39.54 1.40
4574 4922 9.664332 AATTTTGCTTATGTGGCATGTATTTAA 57.336 25.926 0.00 0.00 39.54 1.52
4575 4923 9.835389 ATTTTGCTTATGTGGCATGTATTTAAT 57.165 25.926 0.00 0.00 39.54 1.40
4576 4924 8.645730 TTTGCTTATGTGGCATGTATTTAATG 57.354 30.769 0.00 0.00 39.54 1.90
4577 4925 7.579761 TGCTTATGTGGCATGTATTTAATGA 57.420 32.000 0.00 0.00 34.56 2.57
4578 4926 8.005192 TGCTTATGTGGCATGTATTTAATGAA 57.995 30.769 0.00 0.00 34.56 2.57
4579 4927 8.136800 TGCTTATGTGGCATGTATTTAATGAAG 58.863 33.333 0.00 0.00 34.56 3.02
4580 4928 8.352201 GCTTATGTGGCATGTATTTAATGAAGA 58.648 33.333 0.00 0.00 0.00 2.87
4581 4929 9.888878 CTTATGTGGCATGTATTTAATGAAGAG 57.111 33.333 0.00 0.00 0.00 2.85
4582 4930 9.625747 TTATGTGGCATGTATTTAATGAAGAGA 57.374 29.630 0.00 0.00 0.00 3.10
4583 4931 7.558161 TGTGGCATGTATTTAATGAAGAGAG 57.442 36.000 0.00 0.00 0.00 3.20
4584 4932 7.337938 TGTGGCATGTATTTAATGAAGAGAGA 58.662 34.615 0.00 0.00 0.00 3.10
4585 4933 7.496920 TGTGGCATGTATTTAATGAAGAGAGAG 59.503 37.037 0.00 0.00 0.00 3.20
4586 4934 6.994496 TGGCATGTATTTAATGAAGAGAGAGG 59.006 38.462 0.00 0.00 0.00 3.69
4587 4935 6.995091 GGCATGTATTTAATGAAGAGAGAGGT 59.005 38.462 0.00 0.00 0.00 3.85
4588 4936 7.041508 GGCATGTATTTAATGAAGAGAGAGGTG 60.042 40.741 0.00 0.00 0.00 4.00
4589 4937 7.519649 GCATGTATTTAATGAAGAGAGAGGTGC 60.520 40.741 0.00 0.00 0.00 5.01
4590 4938 7.187824 TGTATTTAATGAAGAGAGAGGTGCT 57.812 36.000 0.00 0.00 0.00 4.40
4591 4939 7.624549 TGTATTTAATGAAGAGAGAGGTGCTT 58.375 34.615 0.00 0.00 0.00 3.91
4592 4940 6.998968 ATTTAATGAAGAGAGAGGTGCTTG 57.001 37.500 0.00 0.00 0.00 4.01
4593 4941 5.489792 TTAATGAAGAGAGAGGTGCTTGT 57.510 39.130 0.00 0.00 0.00 3.16
4594 4942 2.827800 TGAAGAGAGAGGTGCTTGTG 57.172 50.000 0.00 0.00 0.00 3.33
4595 4943 1.345741 TGAAGAGAGAGGTGCTTGTGG 59.654 52.381 0.00 0.00 0.00 4.17
4596 4944 1.346068 GAAGAGAGAGGTGCTTGTGGT 59.654 52.381 0.00 0.00 0.00 4.16
4597 4945 2.310779 AGAGAGAGGTGCTTGTGGTA 57.689 50.000 0.00 0.00 0.00 3.25
4598 4946 2.609747 AGAGAGAGGTGCTTGTGGTAA 58.390 47.619 0.00 0.00 0.00 2.85
4599 4947 2.300437 AGAGAGAGGTGCTTGTGGTAAC 59.700 50.000 0.00 0.00 0.00 2.50
4600 4948 2.300437 GAGAGAGGTGCTTGTGGTAACT 59.700 50.000 0.00 0.00 37.61 2.24
4601 4949 3.507411 AGAGAGGTGCTTGTGGTAACTA 58.493 45.455 0.00 0.00 37.61 2.24
4602 4950 3.511934 AGAGAGGTGCTTGTGGTAACTAG 59.488 47.826 0.00 0.00 37.61 2.57
4619 4967 5.672421 AACTAGCTAAGTTACCGGAACAT 57.328 39.130 9.46 4.03 46.85 2.71
4620 4968 5.259832 ACTAGCTAAGTTACCGGAACATC 57.740 43.478 9.46 0.00 40.86 3.06
4621 4969 4.708421 ACTAGCTAAGTTACCGGAACATCA 59.292 41.667 9.46 0.00 40.86 3.07
4622 4970 3.858247 AGCTAAGTTACCGGAACATCAC 58.142 45.455 9.46 0.66 40.86 3.06
4623 4971 3.259876 AGCTAAGTTACCGGAACATCACA 59.740 43.478 9.46 0.00 40.86 3.58
4624 4972 3.370061 GCTAAGTTACCGGAACATCACAC 59.630 47.826 9.46 0.00 40.86 3.82
4625 4973 3.478857 AAGTTACCGGAACATCACACA 57.521 42.857 9.46 0.00 40.86 3.72
4626 4974 2.762745 AGTTACCGGAACATCACACAC 58.237 47.619 9.46 0.00 40.86 3.82
4627 4975 2.367567 AGTTACCGGAACATCACACACT 59.632 45.455 9.46 0.00 40.86 3.55
4628 4976 2.735134 GTTACCGGAACATCACACACTC 59.265 50.000 9.46 0.00 38.02 3.51
4629 4977 0.034896 ACCGGAACATCACACACTCC 59.965 55.000 9.46 0.00 0.00 3.85
4630 4978 0.034756 CCGGAACATCACACACTCCA 59.965 55.000 0.00 0.00 0.00 3.86
4631 4979 1.542328 CCGGAACATCACACACTCCAA 60.542 52.381 0.00 0.00 0.00 3.53
4632 4980 1.800586 CGGAACATCACACACTCCAAG 59.199 52.381 0.00 0.00 0.00 3.61
4633 4981 2.547855 CGGAACATCACACACTCCAAGA 60.548 50.000 0.00 0.00 0.00 3.02
4634 4982 3.476552 GGAACATCACACACTCCAAGAA 58.523 45.455 0.00 0.00 0.00 2.52
4635 4983 3.882888 GGAACATCACACACTCCAAGAAA 59.117 43.478 0.00 0.00 0.00 2.52
4636 4984 4.261197 GGAACATCACACACTCCAAGAAAC 60.261 45.833 0.00 0.00 0.00 2.78
4637 4985 3.884895 ACATCACACACTCCAAGAAACA 58.115 40.909 0.00 0.00 0.00 2.83
4638 4986 4.269183 ACATCACACACTCCAAGAAACAA 58.731 39.130 0.00 0.00 0.00 2.83
4639 4987 4.889409 ACATCACACACTCCAAGAAACAAT 59.111 37.500 0.00 0.00 0.00 2.71
4640 4988 4.898829 TCACACACTCCAAGAAACAATG 57.101 40.909 0.00 0.00 0.00 2.82
4641 4989 4.522114 TCACACACTCCAAGAAACAATGA 58.478 39.130 0.00 0.00 0.00 2.57
4642 4990 4.576053 TCACACACTCCAAGAAACAATGAG 59.424 41.667 0.00 0.00 0.00 2.90
4643 4991 4.336433 CACACACTCCAAGAAACAATGAGT 59.664 41.667 0.00 0.00 36.77 3.41
4644 4992 4.576463 ACACACTCCAAGAAACAATGAGTC 59.424 41.667 0.00 0.00 34.21 3.36
4645 4993 4.818546 CACACTCCAAGAAACAATGAGTCT 59.181 41.667 0.00 0.00 34.21 3.24
4646 4994 5.991606 CACACTCCAAGAAACAATGAGTCTA 59.008 40.000 0.00 0.00 34.21 2.59
4647 4995 6.652481 CACACTCCAAGAAACAATGAGTCTAT 59.348 38.462 0.00 0.00 34.21 1.98
4648 4996 7.819415 CACACTCCAAGAAACAATGAGTCTATA 59.181 37.037 0.00 0.00 34.21 1.31
4649 4997 8.375506 ACACTCCAAGAAACAATGAGTCTATAA 58.624 33.333 0.00 0.00 34.21 0.98
4650 4998 8.660373 CACTCCAAGAAACAATGAGTCTATAAC 58.340 37.037 0.00 0.00 34.21 1.89
4651 4999 7.824779 ACTCCAAGAAACAATGAGTCTATAACC 59.175 37.037 0.00 0.00 30.81 2.85
4652 5000 7.918076 TCCAAGAAACAATGAGTCTATAACCT 58.082 34.615 0.00 0.00 0.00 3.50
4653 5001 9.042450 TCCAAGAAACAATGAGTCTATAACCTA 57.958 33.333 0.00 0.00 0.00 3.08
4654 5002 9.667107 CCAAGAAACAATGAGTCTATAACCTAA 57.333 33.333 0.00 0.00 0.00 2.69
4675 5023 9.353431 ACCTAATAAATACATCATTGCATGACA 57.647 29.630 0.00 0.00 43.01 3.58
4676 5024 9.616634 CCTAATAAATACATCATTGCATGACAC 57.383 33.333 0.00 0.00 43.01 3.67
4680 5028 7.628769 AAATACATCATTGCATGACACTACA 57.371 32.000 0.00 0.00 43.01 2.74
4681 5029 7.812690 AATACATCATTGCATGACACTACAT 57.187 32.000 0.00 0.00 43.01 2.29
4682 5030 8.907222 AATACATCATTGCATGACACTACATA 57.093 30.769 0.00 0.00 43.01 2.29
4683 5031 6.856135 ACATCATTGCATGACACTACATAG 57.144 37.500 0.00 0.00 43.01 2.23
4684 5032 6.585416 ACATCATTGCATGACACTACATAGA 58.415 36.000 0.00 0.00 43.01 1.98
4685 5033 7.222161 ACATCATTGCATGACACTACATAGAT 58.778 34.615 0.00 0.00 43.01 1.98
4686 5034 7.172703 ACATCATTGCATGACACTACATAGATG 59.827 37.037 0.00 0.00 43.01 2.90
4687 5035 6.585416 TCATTGCATGACACTACATAGATGT 58.415 36.000 0.00 0.08 38.37 3.06
4688 5036 7.049754 TCATTGCATGACACTACATAGATGTT 58.950 34.615 0.00 0.00 36.98 2.71
4689 5037 6.908870 TTGCATGACACTACATAGATGTTC 57.091 37.500 0.00 0.00 41.97 3.18
4690 5038 5.359756 TGCATGACACTACATAGATGTTCC 58.640 41.667 0.00 0.00 41.97 3.62
4691 5039 5.129320 TGCATGACACTACATAGATGTTCCT 59.871 40.000 0.00 0.00 41.97 3.36
4692 5040 6.323739 TGCATGACACTACATAGATGTTCCTA 59.676 38.462 0.00 0.00 41.97 2.94
4693 5041 6.642950 GCATGACACTACATAGATGTTCCTAC 59.357 42.308 0.00 0.00 41.97 3.18
4694 5042 6.710597 TGACACTACATAGATGTTCCTACC 57.289 41.667 0.00 0.00 41.97 3.18
4695 5043 5.597182 TGACACTACATAGATGTTCCTACCC 59.403 44.000 0.00 0.00 41.97 3.69
4696 5044 5.525484 ACACTACATAGATGTTCCTACCCA 58.475 41.667 0.00 0.00 41.97 4.51
4697 5045 5.363005 ACACTACATAGATGTTCCTACCCAC 59.637 44.000 0.00 0.00 41.97 4.61
4698 5046 5.598830 CACTACATAGATGTTCCTACCCACT 59.401 44.000 0.00 0.00 41.97 4.00
4699 5047 6.776116 CACTACATAGATGTTCCTACCCACTA 59.224 42.308 0.00 0.00 41.97 2.74
4700 5048 7.451877 CACTACATAGATGTTCCTACCCACTAT 59.548 40.741 0.00 0.00 41.97 2.12
4701 5049 6.672266 ACATAGATGTTCCTACCCACTATG 57.328 41.667 0.00 0.00 37.90 2.23
4702 5050 5.544176 ACATAGATGTTCCTACCCACTATGG 59.456 44.000 0.81 0.00 37.90 2.74
4703 5051 4.280789 AGATGTTCCTACCCACTATGGA 57.719 45.455 0.00 0.00 40.96 3.41
4704 5052 4.227197 AGATGTTCCTACCCACTATGGAG 58.773 47.826 0.00 0.00 40.96 3.86
4705 5053 2.759355 TGTTCCTACCCACTATGGAGG 58.241 52.381 0.00 0.00 40.96 4.30
4706 5054 2.045326 TGTTCCTACCCACTATGGAGGT 59.955 50.000 0.00 1.66 40.96 3.85
4707 5055 3.272818 TGTTCCTACCCACTATGGAGGTA 59.727 47.826 0.00 3.53 40.96 3.08
4713 5061 4.341863 ACCCACTATGGAGGTAGTAACA 57.658 45.455 0.00 0.00 40.96 2.41
4714 5062 4.892198 ACCCACTATGGAGGTAGTAACAT 58.108 43.478 0.00 0.00 40.96 2.71
4715 5063 6.034442 ACCCACTATGGAGGTAGTAACATA 57.966 41.667 0.00 0.00 40.96 2.29
4716 5064 6.075984 ACCCACTATGGAGGTAGTAACATAG 58.924 44.000 8.52 8.52 45.07 2.23
4722 5070 8.795842 CTATGGAGGTAGTAACATAGTCTAGG 57.204 42.308 0.00 0.00 38.48 3.02
4723 5071 5.950023 TGGAGGTAGTAACATAGTCTAGGG 58.050 45.833 0.00 0.00 0.00 3.53
4724 5072 5.673574 TGGAGGTAGTAACATAGTCTAGGGA 59.326 44.000 0.00 0.00 0.00 4.20
4725 5073 6.160992 TGGAGGTAGTAACATAGTCTAGGGAA 59.839 42.308 0.00 0.00 0.00 3.97
4726 5074 6.716173 GGAGGTAGTAACATAGTCTAGGGAAG 59.284 46.154 0.00 0.00 0.00 3.46
4727 5075 7.223472 AGGTAGTAACATAGTCTAGGGAAGT 57.777 40.000 0.00 0.00 0.00 3.01
4728 5076 7.061688 AGGTAGTAACATAGTCTAGGGAAGTG 58.938 42.308 0.00 0.00 0.00 3.16
4729 5077 6.832900 GGTAGTAACATAGTCTAGGGAAGTGT 59.167 42.308 0.00 0.00 0.00 3.55
4730 5078 6.777213 AGTAACATAGTCTAGGGAAGTGTG 57.223 41.667 0.00 0.00 0.00 3.82
4731 5079 6.491383 AGTAACATAGTCTAGGGAAGTGTGA 58.509 40.000 0.00 0.00 0.00 3.58
4732 5080 6.952358 AGTAACATAGTCTAGGGAAGTGTGAA 59.048 38.462 0.00 0.00 0.00 3.18
4733 5081 5.923733 ACATAGTCTAGGGAAGTGTGAAG 57.076 43.478 0.00 0.00 0.00 3.02
4734 5082 5.334421 ACATAGTCTAGGGAAGTGTGAAGT 58.666 41.667 0.00 0.00 0.00 3.01
4735 5083 5.780793 ACATAGTCTAGGGAAGTGTGAAGTT 59.219 40.000 0.00 0.00 0.00 2.66
4736 5084 6.952358 ACATAGTCTAGGGAAGTGTGAAGTTA 59.048 38.462 0.00 0.00 0.00 2.24
4737 5085 5.725325 AGTCTAGGGAAGTGTGAAGTTAC 57.275 43.478 0.00 0.00 0.00 2.50
4738 5086 5.395611 AGTCTAGGGAAGTGTGAAGTTACT 58.604 41.667 0.00 0.00 0.00 2.24
4739 5087 6.550163 AGTCTAGGGAAGTGTGAAGTTACTA 58.450 40.000 0.00 0.00 0.00 1.82
4740 5088 6.660094 AGTCTAGGGAAGTGTGAAGTTACTAG 59.340 42.308 0.00 0.00 0.00 2.57
4741 5089 4.538746 AGGGAAGTGTGAAGTTACTAGC 57.461 45.455 0.00 0.00 0.00 3.42
4742 5090 4.161102 AGGGAAGTGTGAAGTTACTAGCT 58.839 43.478 0.00 0.00 0.00 3.32
4743 5091 4.593634 AGGGAAGTGTGAAGTTACTAGCTT 59.406 41.667 0.00 0.00 0.00 3.74
4744 5092 5.778750 AGGGAAGTGTGAAGTTACTAGCTTA 59.221 40.000 0.00 0.00 0.00 3.09
4745 5093 6.440965 AGGGAAGTGTGAAGTTACTAGCTTAT 59.559 38.462 0.00 0.00 0.00 1.73
4746 5094 6.535508 GGGAAGTGTGAAGTTACTAGCTTATG 59.464 42.308 0.00 0.00 0.00 1.90
4747 5095 7.097834 GGAAGTGTGAAGTTACTAGCTTATGT 58.902 38.462 0.00 0.00 0.00 2.29
4748 5096 7.603024 GGAAGTGTGAAGTTACTAGCTTATGTT 59.397 37.037 0.00 0.00 0.00 2.71
4749 5097 8.535690 AAGTGTGAAGTTACTAGCTTATGTTC 57.464 34.615 0.00 0.00 0.00 3.18
4750 5098 7.897864 AGTGTGAAGTTACTAGCTTATGTTCT 58.102 34.615 0.00 0.00 0.00 3.01
4751 5099 8.368668 AGTGTGAAGTTACTAGCTTATGTTCTT 58.631 33.333 0.00 0.00 0.00 2.52
4752 5100 8.436200 GTGTGAAGTTACTAGCTTATGTTCTTG 58.564 37.037 0.00 0.00 0.00 3.02
4753 5101 7.117812 TGTGAAGTTACTAGCTTATGTTCTTGC 59.882 37.037 0.00 0.00 0.00 4.01
4754 5102 6.594159 TGAAGTTACTAGCTTATGTTCTTGCC 59.406 38.462 0.00 0.00 0.00 4.52
4755 5103 5.429130 AGTTACTAGCTTATGTTCTTGCCC 58.571 41.667 0.00 0.00 0.00 5.36
4756 5104 5.045869 AGTTACTAGCTTATGTTCTTGCCCA 60.046 40.000 0.00 0.00 0.00 5.36
4757 5105 4.510167 ACTAGCTTATGTTCTTGCCCAT 57.490 40.909 0.00 0.00 0.00 4.00
4758 5106 4.860022 ACTAGCTTATGTTCTTGCCCATT 58.140 39.130 0.00 0.00 0.00 3.16
4759 5107 4.641989 ACTAGCTTATGTTCTTGCCCATTG 59.358 41.667 0.00 0.00 0.00 2.82
4760 5108 3.434309 AGCTTATGTTCTTGCCCATTGT 58.566 40.909 0.00 0.00 0.00 2.71
4761 5109 3.194116 AGCTTATGTTCTTGCCCATTGTG 59.806 43.478 0.00 0.00 0.00 3.33
4762 5110 3.193267 GCTTATGTTCTTGCCCATTGTGA 59.807 43.478 0.00 0.00 0.00 3.58
4763 5111 4.737054 CTTATGTTCTTGCCCATTGTGAC 58.263 43.478 0.00 0.00 0.00 3.67
4764 5112 1.327303 TGTTCTTGCCCATTGTGACC 58.673 50.000 0.00 0.00 0.00 4.02
4765 5113 1.327303 GTTCTTGCCCATTGTGACCA 58.673 50.000 0.00 0.00 0.00 4.02
4766 5114 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
4767 5115 0.895100 TCTTGCCCATTGTGACCAGC 60.895 55.000 0.00 0.00 0.00 4.85
4768 5116 1.880819 CTTGCCCATTGTGACCAGCC 61.881 60.000 0.00 0.00 0.00 4.85
4769 5117 2.036256 GCCCATTGTGACCAGCCT 59.964 61.111 0.00 0.00 0.00 4.58
4770 5118 1.607467 GCCCATTGTGACCAGCCTT 60.607 57.895 0.00 0.00 0.00 4.35
4771 5119 0.323360 GCCCATTGTGACCAGCCTTA 60.323 55.000 0.00 0.00 0.00 2.69
4772 5120 1.755179 CCCATTGTGACCAGCCTTAG 58.245 55.000 0.00 0.00 0.00 2.18
4773 5121 1.683011 CCCATTGTGACCAGCCTTAGG 60.683 57.143 0.00 0.00 0.00 2.69
4793 5141 2.823147 GCTAGCAGCCCAGCACAG 60.823 66.667 10.63 0.00 37.73 3.66
4931 5279 0.252197 GCCAATGGTACTCGGGAACT 59.748 55.000 0.00 0.00 0.00 3.01
4951 5299 4.136051 ACTTCCGTTTCCGAAAAACCATA 58.864 39.130 0.00 0.00 35.63 2.74
4966 5314 8.995906 CGAAAAACCATATTCTACAACGATTTC 58.004 33.333 0.00 0.00 0.00 2.17
5056 5404 3.959943 ACTTTCACAAATGGCGTACAAC 58.040 40.909 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.708092 TCATGCTTATTTTCATTTGAAATGTGA 57.292 25.926 16.62 7.02 42.83 3.58
25 26 4.323417 AGTCGTGGTCATGCTTATTTTCA 58.677 39.130 0.00 0.00 0.00 2.69
34 35 4.678509 TTTTATTGAGTCGTGGTCATGC 57.321 40.909 0.00 0.00 0.00 4.06
63 65 9.685276 AGAGATGTCATTTGATTTACACCATAA 57.315 29.630 0.00 0.00 0.00 1.90
68 70 9.897744 TCAAAAGAGATGTCATTTGATTTACAC 57.102 29.630 16.54 0.00 42.58 2.90
70 72 9.565213 CCTCAAAAGAGATGTCATTTGATTTAC 57.435 33.333 19.60 0.00 44.96 2.01
72 74 7.310237 CCCCTCAAAAGAGATGTCATTTGATTT 60.310 37.037 19.60 0.00 44.96 2.17
104 109 7.062605 ACGTTACGGGCTTCAATTATAATATCG 59.937 37.037 10.20 0.00 0.00 2.92
105 110 8.166706 CACGTTACGGGCTTCAATTATAATATC 58.833 37.037 10.20 0.00 0.00 1.63
189 377 6.503524 TGTGTTTTGATTAAGTTCAAGGAGC 58.496 36.000 0.00 0.00 36.97 4.70
272 469 0.587768 TGAGATTTGTGCGTGCAGTG 59.412 50.000 0.00 0.00 0.00 3.66
291 488 9.847706 CTACTCTACTATATGCATGTCGAATTT 57.152 33.333 10.16 0.00 0.00 1.82
314 511 9.968870 ACTTACGGTATACACTAGTAGTACTAC 57.031 37.037 23.03 23.03 32.86 2.73
365 562 0.173255 TCTGATCGTCGCATCTGCAA 59.827 50.000 2.72 0.00 42.21 4.08
431 633 1.202188 GCCCTTTTGCTTGCGTAGATC 60.202 52.381 0.00 0.00 0.00 2.75
436 638 0.821711 TAGTGCCCTTTTGCTTGCGT 60.822 50.000 0.00 0.00 0.00 5.24
489 691 1.767681 GAGAACCCATCATGGCTCTCT 59.232 52.381 19.91 11.69 39.73 3.10
490 692 1.539929 CGAGAACCCATCATGGCTCTC 60.540 57.143 18.25 18.25 39.58 3.20
657 859 1.952367 AAGGGACTACGGTCTACGGTG 60.952 57.143 3.80 0.00 44.17 4.94
718 925 2.532256 GCTAGCATGAGCAGCACGG 61.532 63.158 10.63 0.00 45.49 4.94
780 992 2.693069 CTGCCTCTTATAATGGCCGAG 58.307 52.381 20.23 12.03 45.56 4.63
850 1062 2.890311 CACTGCTCAGGTCTCCCTATAG 59.110 54.545 1.66 0.00 39.89 1.31
851 1063 2.950781 CACTGCTCAGGTCTCCCTATA 58.049 52.381 1.66 0.00 39.89 1.31
899 1112 2.708255 GACGAGACGACGCCTAGG 59.292 66.667 3.67 3.67 36.70 3.02
1308 1560 3.324846 TGATCAGGACCTGCATGTATACC 59.675 47.826 17.33 0.00 0.00 2.73
1337 1589 2.241880 CGGCTTCGTGTCGGTGTTT 61.242 57.895 0.00 0.00 40.56 2.83
1700 1952 1.084370 GTTTGCTGGATCCGGACGAG 61.084 60.000 25.54 8.27 0.00 4.18
2061 2313 1.488705 CCAGTGCTGGTGGGACCTAA 61.489 60.000 9.96 0.00 45.53 2.69
2126 2378 2.046892 AGCTGATCAACGCCGCTT 60.047 55.556 3.46 0.00 0.00 4.68
2387 2639 8.183104 AGTTACTATTGTAGCTGATAGCATCA 57.817 34.615 0.00 0.00 45.56 3.07
2625 2879 3.191162 GGACGTGCGTGTATGGGTATATA 59.809 47.826 0.67 0.00 0.00 0.86
2626 2880 2.029649 GGACGTGCGTGTATGGGTATAT 60.030 50.000 0.67 0.00 0.00 0.86
2689 2943 1.619298 ATCATTGGGGCCCTAAAGGA 58.381 50.000 26.05 23.86 38.24 3.36
2735 2989 1.247567 CAAGCCCAATCGTCAAACCT 58.752 50.000 0.00 0.00 0.00 3.50
2752 3006 5.888724 TGGTTCAACCTTGTCTCATTTACAA 59.111 36.000 8.40 0.00 39.58 2.41
2931 3185 3.223589 GCTCGCTCTCTCTCCCCC 61.224 72.222 0.00 0.00 0.00 5.40
2932 3186 3.591835 CGCTCGCTCTCTCTCCCC 61.592 72.222 0.00 0.00 0.00 4.81
2933 3187 2.515057 TCGCTCGCTCTCTCTCCC 60.515 66.667 0.00 0.00 0.00 4.30
2944 3225 4.936248 CTCTCGCTCGCTCGCTCG 62.936 72.222 0.00 0.00 0.00 5.03
2948 3229 1.821241 CTCTCTCTCTCGCTCGCTCG 61.821 65.000 0.00 0.00 0.00 5.03
2952 3233 2.154854 ATCTCTCTCTCTCTCGCTCG 57.845 55.000 0.00 0.00 0.00 5.03
2956 3237 5.506151 CCATCACAAATCTCTCTCTCTCTCG 60.506 48.000 0.00 0.00 0.00 4.04
3024 3305 8.715998 CATTAATGAATCTACAGGTCATGCTAC 58.284 37.037 10.04 0.00 32.38 3.58
3148 3429 6.385649 TTTTGGAATCTTATATGGAACCGC 57.614 37.500 0.00 0.00 0.00 5.68
3202 3483 6.266323 TCTCACATCTTCGATAACTAAGCAC 58.734 40.000 0.00 0.00 0.00 4.40
3236 3518 0.736636 CAATGTGCGCATGACCAGAT 59.263 50.000 15.91 0.00 35.15 2.90
3240 3522 1.153978 CCACAATGTGCGCATGACC 60.154 57.895 15.91 0.00 35.15 4.02
3248 3530 2.107950 TACTGCTACCCACAATGTGC 57.892 50.000 8.05 0.00 31.34 4.57
3254 3536 4.323417 CACTTGAATTACTGCTACCCACA 58.677 43.478 0.00 0.00 0.00 4.17
3255 3537 3.689649 CCACTTGAATTACTGCTACCCAC 59.310 47.826 0.00 0.00 0.00 4.61
3256 3538 3.585289 TCCACTTGAATTACTGCTACCCA 59.415 43.478 0.00 0.00 0.00 4.51
3257 3539 4.216411 TCCACTTGAATTACTGCTACCC 57.784 45.455 0.00 0.00 0.00 3.69
3292 3578 7.383687 TCAAATTCTACTCCTTTCACACGTAT 58.616 34.615 0.00 0.00 0.00 3.06
3320 3606 6.423776 TCATCCACTAATATGTCAGCATCA 57.576 37.500 0.00 0.00 36.58 3.07
3323 3609 7.281841 TGATTTCATCCACTAATATGTCAGCA 58.718 34.615 0.00 0.00 0.00 4.41
3331 3617 7.327975 ACTGACGTTGATTTCATCCACTAATA 58.672 34.615 0.00 0.00 0.00 0.98
3355 3641 9.387257 CCCCCTTTTGGTTCGTATATATATTAC 57.613 37.037 0.00 0.00 38.10 1.89
3395 3725 1.159713 TGAGTTGTGTGGCTTGCGAG 61.160 55.000 0.00 0.00 0.00 5.03
3422 3755 3.932710 TGACATGACCATACGAAAGAAGC 59.067 43.478 0.00 0.00 0.00 3.86
3424 3757 3.924073 CGTGACATGACCATACGAAAGAA 59.076 43.478 0.00 0.00 36.94 2.52
3427 3760 2.612604 CCGTGACATGACCATACGAAA 58.387 47.619 0.00 0.00 36.94 3.46
3439 3772 1.229428 CAGACAAGTTGCCGTGACAT 58.771 50.000 1.81 0.00 0.00 3.06
3458 3791 4.559862 TCCTCCCTTTTCTCTTGATGAC 57.440 45.455 0.00 0.00 0.00 3.06
3473 3806 0.951040 CGCATCCGCTTATTCCTCCC 60.951 60.000 0.00 0.00 35.30 4.30
3493 3826 2.867456 ACGCGGTAAAATTCTTCACG 57.133 45.000 12.47 0.00 0.00 4.35
3572 3908 1.818674 GAAATTTGACCGCCATCACCT 59.181 47.619 0.00 0.00 0.00 4.00
3706 4046 4.492611 GAAACGGAAGACTACGAGGAAAT 58.507 43.478 6.49 0.00 0.00 2.17
3742 4082 1.679032 GCGCAGAGGGGAGTTATTGTT 60.679 52.381 0.30 0.00 0.00 2.83
4273 4620 1.139989 AAACGACACGATCACTGCTG 58.860 50.000 0.00 0.00 0.00 4.41
4313 4660 6.978674 AGGAGTATATCGACCTCAATCAAA 57.021 37.500 0.00 0.00 0.00 2.69
4403 4751 2.825836 GGAGGCTCATGTTGCGGG 60.826 66.667 17.69 0.00 0.00 6.13
4404 4752 2.825836 GGGAGGCTCATGTTGCGG 60.826 66.667 17.69 0.00 0.00 5.69
4454 4802 6.412943 GCGACTTTAAAACCAAAACAGTAGAC 59.587 38.462 0.00 0.00 0.00 2.59
4474 4822 2.851195 ACTTGAAGTTCATTGGCGACT 58.149 42.857 6.36 0.00 0.00 4.18
4500 4848 1.074090 TTCCTCCCCACTGTGACCA 60.074 57.895 9.86 0.00 0.00 4.02
4502 4850 0.765510 AAGTTCCTCCCCACTGTGAC 59.234 55.000 9.86 0.00 0.00 3.67
4504 4852 1.279271 CCTAAGTTCCTCCCCACTGTG 59.721 57.143 0.00 0.00 0.00 3.66
4505 4853 1.151413 TCCTAAGTTCCTCCCCACTGT 59.849 52.381 0.00 0.00 0.00 3.55
4506 4854 1.834263 CTCCTAAGTTCCTCCCCACTG 59.166 57.143 0.00 0.00 0.00 3.66
4507 4855 1.437547 ACTCCTAAGTTCCTCCCCACT 59.562 52.381 0.00 0.00 28.74 4.00
4508 4856 1.954035 ACTCCTAAGTTCCTCCCCAC 58.046 55.000 0.00 0.00 28.74 4.61
4509 4857 3.181404 TGTTACTCCTAAGTTCCTCCCCA 60.181 47.826 0.00 0.00 36.92 4.96
4510 4858 3.447950 TGTTACTCCTAAGTTCCTCCCC 58.552 50.000 0.00 0.00 36.92 4.81
4511 4859 4.715297 TGATGTTACTCCTAAGTTCCTCCC 59.285 45.833 0.00 0.00 36.92 4.30
4512 4860 5.187186 TGTGATGTTACTCCTAAGTTCCTCC 59.813 44.000 0.00 0.00 36.92 4.30
4513 4861 6.100668 GTGTGATGTTACTCCTAAGTTCCTC 58.899 44.000 0.00 0.00 36.92 3.71
4514 4862 5.542635 TGTGTGATGTTACTCCTAAGTTCCT 59.457 40.000 0.00 0.00 36.92 3.36
4515 4863 5.638234 GTGTGTGATGTTACTCCTAAGTTCC 59.362 44.000 0.00 0.00 36.92 3.62
4516 4864 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
4517 4865 6.420913 AGTGTGTGATGTTACTCCTAAGTT 57.579 37.500 0.00 0.00 36.92 2.66
4518 4866 6.026947 GAGTGTGTGATGTTACTCCTAAGT 57.973 41.667 0.00 0.00 39.66 2.24
4524 4872 6.163476 TGTATTGGAGTGTGTGATGTTACTC 58.837 40.000 0.00 0.00 38.98 2.59
4525 4873 6.109156 TGTATTGGAGTGTGTGATGTTACT 57.891 37.500 0.00 0.00 0.00 2.24
4526 4874 6.795098 TTGTATTGGAGTGTGTGATGTTAC 57.205 37.500 0.00 0.00 0.00 2.50
4527 4875 7.994425 AATTGTATTGGAGTGTGTGATGTTA 57.006 32.000 0.00 0.00 0.00 2.41
4528 4876 6.899393 AATTGTATTGGAGTGTGTGATGTT 57.101 33.333 0.00 0.00 0.00 2.71
4529 4877 6.899393 AAATTGTATTGGAGTGTGTGATGT 57.101 33.333 0.00 0.00 0.00 3.06
4530 4878 6.089820 GCAAAATTGTATTGGAGTGTGTGATG 59.910 38.462 0.00 0.00 0.00 3.07
4531 4879 6.015180 AGCAAAATTGTATTGGAGTGTGTGAT 60.015 34.615 0.00 0.00 0.00 3.06
4532 4880 5.301551 AGCAAAATTGTATTGGAGTGTGTGA 59.698 36.000 0.00 0.00 0.00 3.58
4533 4881 5.531634 AGCAAAATTGTATTGGAGTGTGTG 58.468 37.500 0.00 0.00 0.00 3.82
4534 4882 5.789643 AGCAAAATTGTATTGGAGTGTGT 57.210 34.783 0.00 0.00 0.00 3.72
4535 4883 7.814107 ACATAAGCAAAATTGTATTGGAGTGTG 59.186 33.333 0.00 0.00 0.00 3.82
4536 4884 7.814107 CACATAAGCAAAATTGTATTGGAGTGT 59.186 33.333 0.00 0.00 0.00 3.55
4537 4885 7.276218 CCACATAAGCAAAATTGTATTGGAGTG 59.724 37.037 0.00 0.00 0.00 3.51
4538 4886 7.322664 CCACATAAGCAAAATTGTATTGGAGT 58.677 34.615 0.00 0.00 0.00 3.85
4539 4887 6.256321 GCCACATAAGCAAAATTGTATTGGAG 59.744 38.462 0.00 0.00 0.00 3.86
4540 4888 6.105333 GCCACATAAGCAAAATTGTATTGGA 58.895 36.000 0.00 0.00 0.00 3.53
4541 4889 5.873712 TGCCACATAAGCAAAATTGTATTGG 59.126 36.000 0.00 0.00 37.28 3.16
4542 4890 6.964741 TGCCACATAAGCAAAATTGTATTG 57.035 33.333 0.00 0.00 37.28 1.90
4543 4891 7.104939 ACATGCCACATAAGCAAAATTGTATT 58.895 30.769 0.00 0.00 44.83 1.89
4544 4892 6.642430 ACATGCCACATAAGCAAAATTGTAT 58.358 32.000 0.00 0.00 44.83 2.29
4545 4893 6.035368 ACATGCCACATAAGCAAAATTGTA 57.965 33.333 0.00 0.00 44.83 2.41
4546 4894 4.897140 ACATGCCACATAAGCAAAATTGT 58.103 34.783 0.00 0.00 44.83 2.71
4547 4895 7.542534 AATACATGCCACATAAGCAAAATTG 57.457 32.000 0.00 0.00 44.83 2.32
4548 4896 9.664332 TTAAATACATGCCACATAAGCAAAATT 57.336 25.926 0.00 0.00 44.83 1.82
4549 4897 9.835389 ATTAAATACATGCCACATAAGCAAAAT 57.165 25.926 0.00 0.00 44.83 1.82
4550 4898 9.096160 CATTAAATACATGCCACATAAGCAAAA 57.904 29.630 0.00 0.00 44.83 2.44
4551 4899 8.473219 TCATTAAATACATGCCACATAAGCAAA 58.527 29.630 0.00 0.00 44.83 3.68
4552 4900 8.005192 TCATTAAATACATGCCACATAAGCAA 57.995 30.769 0.00 0.00 44.83 3.91
4553 4901 7.579761 TCATTAAATACATGCCACATAAGCA 57.420 32.000 0.00 0.00 45.94 3.91
4554 4902 8.352201 TCTTCATTAAATACATGCCACATAAGC 58.648 33.333 0.00 0.00 0.00 3.09
4555 4903 9.888878 CTCTTCATTAAATACATGCCACATAAG 57.111 33.333 0.00 0.00 0.00 1.73
4556 4904 9.625747 TCTCTTCATTAAATACATGCCACATAA 57.374 29.630 0.00 0.00 0.00 1.90
4557 4905 9.276590 CTCTCTTCATTAAATACATGCCACATA 57.723 33.333 0.00 0.00 0.00 2.29
4558 4906 7.994911 TCTCTCTTCATTAAATACATGCCACAT 59.005 33.333 0.00 0.00 0.00 3.21
4559 4907 7.337938 TCTCTCTTCATTAAATACATGCCACA 58.662 34.615 0.00 0.00 0.00 4.17
4560 4908 7.041508 CCTCTCTCTTCATTAAATACATGCCAC 60.042 40.741 0.00 0.00 0.00 5.01
4561 4909 6.994496 CCTCTCTCTTCATTAAATACATGCCA 59.006 38.462 0.00 0.00 0.00 4.92
4562 4910 6.995091 ACCTCTCTCTTCATTAAATACATGCC 59.005 38.462 0.00 0.00 0.00 4.40
4563 4911 7.519649 GCACCTCTCTCTTCATTAAATACATGC 60.520 40.741 0.00 0.00 0.00 4.06
4564 4912 7.714377 AGCACCTCTCTCTTCATTAAATACATG 59.286 37.037 0.00 0.00 0.00 3.21
4565 4913 7.800092 AGCACCTCTCTCTTCATTAAATACAT 58.200 34.615 0.00 0.00 0.00 2.29
4566 4914 7.187824 AGCACCTCTCTCTTCATTAAATACA 57.812 36.000 0.00 0.00 0.00 2.29
4567 4915 7.550906 ACAAGCACCTCTCTCTTCATTAAATAC 59.449 37.037 0.00 0.00 0.00 1.89
4568 4916 7.550551 CACAAGCACCTCTCTCTTCATTAAATA 59.449 37.037 0.00 0.00 0.00 1.40
4569 4917 6.373774 CACAAGCACCTCTCTCTTCATTAAAT 59.626 38.462 0.00 0.00 0.00 1.40
4570 4918 5.702670 CACAAGCACCTCTCTCTTCATTAAA 59.297 40.000 0.00 0.00 0.00 1.52
4571 4919 5.240891 CACAAGCACCTCTCTCTTCATTAA 58.759 41.667 0.00 0.00 0.00 1.40
4572 4920 4.323028 CCACAAGCACCTCTCTCTTCATTA 60.323 45.833 0.00 0.00 0.00 1.90
4573 4921 3.558746 CCACAAGCACCTCTCTCTTCATT 60.559 47.826 0.00 0.00 0.00 2.57
4574 4922 2.027377 CCACAAGCACCTCTCTCTTCAT 60.027 50.000 0.00 0.00 0.00 2.57
4575 4923 1.345741 CCACAAGCACCTCTCTCTTCA 59.654 52.381 0.00 0.00 0.00 3.02
4576 4924 1.346068 ACCACAAGCACCTCTCTCTTC 59.654 52.381 0.00 0.00 0.00 2.87
4577 4925 1.428869 ACCACAAGCACCTCTCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
4578 4926 2.300437 GTTACCACAAGCACCTCTCTCT 59.700 50.000 0.00 0.00 0.00 3.10
4579 4927 2.300437 AGTTACCACAAGCACCTCTCTC 59.700 50.000 0.00 0.00 0.00 3.20
4580 4928 2.330216 AGTTACCACAAGCACCTCTCT 58.670 47.619 0.00 0.00 0.00 3.10
4581 4929 2.841442 AGTTACCACAAGCACCTCTC 57.159 50.000 0.00 0.00 0.00 3.20
4582 4930 2.028020 GCTAGTTACCACAAGCACCTCT 60.028 50.000 0.00 0.00 35.05 3.69
4583 4931 2.028020 AGCTAGTTACCACAAGCACCTC 60.028 50.000 0.00 0.00 37.44 3.85
4584 4932 1.978580 AGCTAGTTACCACAAGCACCT 59.021 47.619 0.00 0.00 37.44 4.00
4585 4933 2.474410 AGCTAGTTACCACAAGCACC 57.526 50.000 0.00 0.00 37.44 5.01
4586 4934 4.566987 ACTTAGCTAGTTACCACAAGCAC 58.433 43.478 0.00 0.00 37.44 4.40
4587 4935 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
4596 4944 6.377996 TGATGTTCCGGTAACTTAGCTAGTTA 59.622 38.462 0.00 10.09 45.22 2.24
4598 4946 4.708421 TGATGTTCCGGTAACTTAGCTAGT 59.292 41.667 0.00 0.00 38.99 2.57
4599 4947 5.041940 GTGATGTTCCGGTAACTTAGCTAG 58.958 45.833 0.00 0.00 38.99 3.42
4600 4948 4.463539 TGTGATGTTCCGGTAACTTAGCTA 59.536 41.667 0.00 0.00 38.99 3.32
4601 4949 3.259876 TGTGATGTTCCGGTAACTTAGCT 59.740 43.478 0.00 0.00 38.99 3.32
4602 4950 3.370061 GTGTGATGTTCCGGTAACTTAGC 59.630 47.826 0.00 0.00 38.99 3.09
4603 4951 4.387862 GTGTGTGATGTTCCGGTAACTTAG 59.612 45.833 0.00 0.00 38.99 2.18
4604 4952 4.039488 AGTGTGTGATGTTCCGGTAACTTA 59.961 41.667 0.00 0.00 38.99 2.24
4605 4953 3.135994 GTGTGTGATGTTCCGGTAACTT 58.864 45.455 0.00 3.15 38.99 2.66
4606 4954 2.367567 AGTGTGTGATGTTCCGGTAACT 59.632 45.455 0.00 0.00 38.99 2.24
4607 4955 2.735134 GAGTGTGTGATGTTCCGGTAAC 59.265 50.000 0.00 5.56 38.67 2.50
4608 4956 2.289195 GGAGTGTGTGATGTTCCGGTAA 60.289 50.000 0.00 0.00 0.00 2.85
4609 4957 1.274167 GGAGTGTGTGATGTTCCGGTA 59.726 52.381 0.00 0.00 0.00 4.02
4610 4958 0.034896 GGAGTGTGTGATGTTCCGGT 59.965 55.000 0.00 0.00 0.00 5.28
4611 4959 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.000 0.00 0.00 0.00 5.14
4612 4960 1.800586 CTTGGAGTGTGTGATGTTCCG 59.199 52.381 0.00 0.00 0.00 4.30
4613 4961 3.126001 TCTTGGAGTGTGTGATGTTCC 57.874 47.619 0.00 0.00 0.00 3.62
4614 4962 4.335315 TGTTTCTTGGAGTGTGTGATGTTC 59.665 41.667 0.00 0.00 0.00 3.18
4615 4963 4.269183 TGTTTCTTGGAGTGTGTGATGTT 58.731 39.130 0.00 0.00 0.00 2.71
4616 4964 3.884895 TGTTTCTTGGAGTGTGTGATGT 58.115 40.909 0.00 0.00 0.00 3.06
4617 4965 4.898829 TTGTTTCTTGGAGTGTGTGATG 57.101 40.909 0.00 0.00 0.00 3.07
4618 4966 5.132502 TCATTGTTTCTTGGAGTGTGTGAT 58.867 37.500 0.00 0.00 0.00 3.06
4619 4967 4.522114 TCATTGTTTCTTGGAGTGTGTGA 58.478 39.130 0.00 0.00 0.00 3.58
4620 4968 4.336433 ACTCATTGTTTCTTGGAGTGTGTG 59.664 41.667 0.00 0.00 37.43 3.82
4621 4969 4.526970 ACTCATTGTTTCTTGGAGTGTGT 58.473 39.130 0.00 0.00 37.43 3.72
4622 4970 4.818546 AGACTCATTGTTTCTTGGAGTGTG 59.181 41.667 0.00 0.00 38.82 3.82
4623 4971 5.041191 AGACTCATTGTTTCTTGGAGTGT 57.959 39.130 0.00 0.00 38.82 3.55
4624 4972 8.660373 GTTATAGACTCATTGTTTCTTGGAGTG 58.340 37.037 0.00 0.00 38.82 3.51
4625 4973 7.824779 GGTTATAGACTCATTGTTTCTTGGAGT 59.175 37.037 0.00 0.00 41.22 3.85
4626 4974 8.043710 AGGTTATAGACTCATTGTTTCTTGGAG 58.956 37.037 0.00 0.00 0.00 3.86
4627 4975 7.918076 AGGTTATAGACTCATTGTTTCTTGGA 58.082 34.615 0.00 0.00 0.00 3.53
4628 4976 9.667107 TTAGGTTATAGACTCATTGTTTCTTGG 57.333 33.333 0.00 0.00 0.00 3.61
4663 5011 6.585416 ACATCTATGTAGTGTCATGCAATGA 58.415 36.000 0.00 0.00 45.34 2.57
4664 5012 6.856135 ACATCTATGTAGTGTCATGCAATG 57.144 37.500 0.00 0.00 42.25 2.82
4665 5013 6.484643 GGAACATCTATGTAGTGTCATGCAAT 59.515 38.462 0.00 0.00 40.80 3.56
4666 5014 5.817296 GGAACATCTATGTAGTGTCATGCAA 59.183 40.000 0.00 0.00 40.80 4.08
4667 5015 5.129320 AGGAACATCTATGTAGTGTCATGCA 59.871 40.000 0.00 0.00 40.80 3.96
4668 5016 5.605534 AGGAACATCTATGTAGTGTCATGC 58.394 41.667 0.00 0.00 40.80 4.06
4669 5017 7.148641 GGTAGGAACATCTATGTAGTGTCATG 58.851 42.308 0.00 0.00 40.80 3.07
4670 5018 6.267928 GGGTAGGAACATCTATGTAGTGTCAT 59.732 42.308 0.00 0.00 40.80 3.06
4671 5019 5.597182 GGGTAGGAACATCTATGTAGTGTCA 59.403 44.000 0.00 0.00 40.80 3.58
4672 5020 5.597182 TGGGTAGGAACATCTATGTAGTGTC 59.403 44.000 0.00 0.00 40.80 3.67
4673 5021 5.363005 GTGGGTAGGAACATCTATGTAGTGT 59.637 44.000 0.00 0.00 40.80 3.55
4674 5022 5.598830 AGTGGGTAGGAACATCTATGTAGTG 59.401 44.000 0.00 0.00 40.80 2.74
4675 5023 5.778542 AGTGGGTAGGAACATCTATGTAGT 58.221 41.667 0.00 0.00 40.80 2.73
4676 5024 7.093727 CCATAGTGGGTAGGAACATCTATGTAG 60.094 44.444 0.00 0.00 35.14 2.74
4677 5025 6.724441 CCATAGTGGGTAGGAACATCTATGTA 59.276 42.308 0.00 0.00 35.14 2.29
4678 5026 5.544176 CCATAGTGGGTAGGAACATCTATGT 59.456 44.000 0.00 0.00 36.83 2.29
4679 5027 5.780282 TCCATAGTGGGTAGGAACATCTATG 59.220 44.000 0.00 0.00 38.32 2.23
4680 5028 5.977533 TCCATAGTGGGTAGGAACATCTAT 58.022 41.667 0.00 0.00 38.32 1.98
4681 5029 5.394738 CTCCATAGTGGGTAGGAACATCTA 58.605 45.833 0.00 0.00 38.32 1.98
4682 5030 4.227197 CTCCATAGTGGGTAGGAACATCT 58.773 47.826 0.00 0.00 38.32 2.90
4683 5031 3.325135 CCTCCATAGTGGGTAGGAACATC 59.675 52.174 0.00 0.00 38.32 3.06
4684 5032 3.311402 ACCTCCATAGTGGGTAGGAACAT 60.311 47.826 9.90 0.00 38.32 2.71
4685 5033 2.045326 ACCTCCATAGTGGGTAGGAACA 59.955 50.000 9.90 0.00 38.32 3.18
4686 5034 2.760581 ACCTCCATAGTGGGTAGGAAC 58.239 52.381 9.90 0.00 38.32 3.62
4687 5035 4.194678 CTACCTCCATAGTGGGTAGGAA 57.805 50.000 9.90 0.00 45.09 3.36
4688 5036 3.897657 CTACCTCCATAGTGGGTAGGA 57.102 52.381 9.90 0.00 45.09 2.94
4691 5039 5.470755 TGTTACTACCTCCATAGTGGGTA 57.529 43.478 0.00 0.00 38.32 3.69
4692 5040 4.341863 TGTTACTACCTCCATAGTGGGT 57.658 45.455 0.00 0.00 38.32 4.51
4693 5041 6.075984 ACTATGTTACTACCTCCATAGTGGG 58.924 44.000 9.63 0.00 44.96 4.61
4694 5042 7.005296 AGACTATGTTACTACCTCCATAGTGG 58.995 42.308 14.01 0.00 46.02 4.00
4695 5043 9.221933 CTAGACTATGTTACTACCTCCATAGTG 57.778 40.741 14.01 0.00 46.02 2.74
4697 5045 7.830201 CCCTAGACTATGTTACTACCTCCATAG 59.170 44.444 0.00 0.00 41.50 2.23
4698 5046 7.518653 TCCCTAGACTATGTTACTACCTCCATA 59.481 40.741 0.00 0.00 0.00 2.74
4699 5047 6.334774 TCCCTAGACTATGTTACTACCTCCAT 59.665 42.308 0.00 0.00 0.00 3.41
4700 5048 5.673574 TCCCTAGACTATGTTACTACCTCCA 59.326 44.000 0.00 0.00 0.00 3.86
4701 5049 6.198237 TCCCTAGACTATGTTACTACCTCC 57.802 45.833 0.00 0.00 0.00 4.30
4702 5050 7.229106 CACTTCCCTAGACTATGTTACTACCTC 59.771 44.444 0.00 0.00 0.00 3.85
4703 5051 7.061688 CACTTCCCTAGACTATGTTACTACCT 58.938 42.308 0.00 0.00 0.00 3.08
4704 5052 6.832900 ACACTTCCCTAGACTATGTTACTACC 59.167 42.308 0.00 0.00 0.00 3.18
4705 5053 7.555554 TCACACTTCCCTAGACTATGTTACTAC 59.444 40.741 0.00 0.00 0.00 2.73
4706 5054 7.636579 TCACACTTCCCTAGACTATGTTACTA 58.363 38.462 0.00 0.00 0.00 1.82
4707 5055 6.491383 TCACACTTCCCTAGACTATGTTACT 58.509 40.000 0.00 0.00 0.00 2.24
4708 5056 6.770746 TCACACTTCCCTAGACTATGTTAC 57.229 41.667 0.00 0.00 0.00 2.50
4709 5057 6.952358 ACTTCACACTTCCCTAGACTATGTTA 59.048 38.462 0.00 0.00 0.00 2.41
4710 5058 5.780793 ACTTCACACTTCCCTAGACTATGTT 59.219 40.000 0.00 0.00 0.00 2.71
4711 5059 5.334421 ACTTCACACTTCCCTAGACTATGT 58.666 41.667 0.00 0.00 0.00 2.29
4712 5060 5.923733 ACTTCACACTTCCCTAGACTATG 57.076 43.478 0.00 0.00 0.00 2.23
4713 5061 7.183460 AGTAACTTCACACTTCCCTAGACTAT 58.817 38.462 0.00 0.00 0.00 2.12
4714 5062 6.550163 AGTAACTTCACACTTCCCTAGACTA 58.450 40.000 0.00 0.00 0.00 2.59
4715 5063 5.395611 AGTAACTTCACACTTCCCTAGACT 58.604 41.667 0.00 0.00 0.00 3.24
4716 5064 5.725325 AGTAACTTCACACTTCCCTAGAC 57.275 43.478 0.00 0.00 0.00 2.59
4717 5065 5.418209 GCTAGTAACTTCACACTTCCCTAGA 59.582 44.000 0.00 0.00 0.00 2.43
4718 5066 5.419471 AGCTAGTAACTTCACACTTCCCTAG 59.581 44.000 0.00 0.00 0.00 3.02
4719 5067 5.331069 AGCTAGTAACTTCACACTTCCCTA 58.669 41.667 0.00 0.00 0.00 3.53
4720 5068 4.161102 AGCTAGTAACTTCACACTTCCCT 58.839 43.478 0.00 0.00 0.00 4.20
4721 5069 4.538746 AGCTAGTAACTTCACACTTCCC 57.461 45.455 0.00 0.00 0.00 3.97
4722 5070 7.097834 ACATAAGCTAGTAACTTCACACTTCC 58.902 38.462 0.00 0.00 0.00 3.46
4723 5071 8.535690 AACATAAGCTAGTAACTTCACACTTC 57.464 34.615 0.00 0.00 0.00 3.01
4724 5072 8.368668 AGAACATAAGCTAGTAACTTCACACTT 58.631 33.333 0.00 0.00 0.00 3.16
4725 5073 7.897864 AGAACATAAGCTAGTAACTTCACACT 58.102 34.615 0.00 0.00 0.00 3.55
4726 5074 8.436200 CAAGAACATAAGCTAGTAACTTCACAC 58.564 37.037 0.00 0.00 0.00 3.82
4727 5075 7.117812 GCAAGAACATAAGCTAGTAACTTCACA 59.882 37.037 0.00 0.00 0.00 3.58
4728 5076 7.413109 GGCAAGAACATAAGCTAGTAACTTCAC 60.413 40.741 0.00 0.00 0.00 3.18
4729 5077 6.594159 GGCAAGAACATAAGCTAGTAACTTCA 59.406 38.462 0.00 0.00 0.00 3.02
4730 5078 6.037281 GGGCAAGAACATAAGCTAGTAACTTC 59.963 42.308 0.00 0.00 0.00 3.01
4731 5079 5.880887 GGGCAAGAACATAAGCTAGTAACTT 59.119 40.000 0.00 0.00 0.00 2.66
4732 5080 5.045869 TGGGCAAGAACATAAGCTAGTAACT 60.046 40.000 0.00 0.00 0.00 2.24
4733 5081 5.183228 TGGGCAAGAACATAAGCTAGTAAC 58.817 41.667 0.00 0.00 0.00 2.50
4734 5082 5.429681 TGGGCAAGAACATAAGCTAGTAA 57.570 39.130 0.00 0.00 0.00 2.24
4735 5083 5.630415 ATGGGCAAGAACATAAGCTAGTA 57.370 39.130 0.00 0.00 0.00 1.82
4736 5084 4.510167 ATGGGCAAGAACATAAGCTAGT 57.490 40.909 0.00 0.00 0.00 2.57
4737 5085 4.641989 ACAATGGGCAAGAACATAAGCTAG 59.358 41.667 0.00 0.00 0.00 3.42
4738 5086 4.398988 CACAATGGGCAAGAACATAAGCTA 59.601 41.667 0.00 0.00 0.00 3.32
4739 5087 3.194116 CACAATGGGCAAGAACATAAGCT 59.806 43.478 0.00 0.00 0.00 3.74
4740 5088 3.193267 TCACAATGGGCAAGAACATAAGC 59.807 43.478 0.00 0.00 0.00 3.09
4741 5089 4.380867 GGTCACAATGGGCAAGAACATAAG 60.381 45.833 0.00 0.00 0.00 1.73
4742 5090 3.509575 GGTCACAATGGGCAAGAACATAA 59.490 43.478 0.00 0.00 0.00 1.90
4743 5091 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
4744 5092 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
4745 5093 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
4746 5094 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
4747 5095 1.619654 CTGGTCACAATGGGCAAGAA 58.380 50.000 0.00 0.00 0.00 2.52
4748 5096 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
4749 5097 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
4750 5098 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
4751 5099 2.283101 GGCTGGTCACAATGGGCA 60.283 61.111 0.00 0.00 0.00 5.36
4752 5100 0.323360 TAAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.00 0.00 5.36
4753 5101 1.683011 CCTAAGGCTGGTCACAATGGG 60.683 57.143 0.00 0.00 0.00 4.00
4754 5102 1.755179 CCTAAGGCTGGTCACAATGG 58.245 55.000 0.00 0.00 0.00 3.16
4755 5103 1.098050 GCCTAAGGCTGGTCACAATG 58.902 55.000 0.00 0.00 46.69 2.82
4756 5104 3.577389 GCCTAAGGCTGGTCACAAT 57.423 52.632 0.00 0.00 46.69 2.71
4767 5115 4.453093 GCTGCTAGCTGCCTAAGG 57.547 61.111 30.25 6.32 42.00 2.69
4773 5121 4.790962 TGCTGGGCTGCTAGCTGC 62.791 66.667 31.87 31.87 41.99 5.25
4774 5122 2.823147 GTGCTGGGCTGCTAGCTG 60.823 66.667 17.23 16.92 41.99 4.24
4775 5123 3.324930 TGTGCTGGGCTGCTAGCT 61.325 61.111 17.23 0.00 41.99 3.32
4776 5124 2.605854 ATCTGTGCTGGGCTGCTAGC 62.606 60.000 8.10 8.10 41.46 3.42
4777 5125 0.814410 CATCTGTGCTGGGCTGCTAG 60.814 60.000 0.00 0.00 0.00 3.42
4793 5141 3.134458 GTTGTCTACCAGCCTATGCATC 58.866 50.000 0.19 0.00 41.13 3.91
4806 5154 5.401531 TGTACTCCATGAAGGTTGTCTAC 57.598 43.478 0.00 0.00 39.02 2.59
4884 5232 6.513806 TTCGGTAGCACTTTGTACTATACA 57.486 37.500 0.00 0.00 36.79 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.