Multiple sequence alignment - TraesCS3B01G271900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G271900 chr3B 100.000 3434 0 0 1 3434 437806126 437802693 0.000000e+00 6342
1 TraesCS3B01G271900 chr3B 100.000 183 0 0 142 324 437810837 437810655 4.250000e-89 339
2 TraesCS3B01G271900 chr3A 92.736 2602 117 31 639 3189 465542497 465545077 0.000000e+00 3692
3 TraesCS3B01G271900 chr3A 92.920 339 16 2 324 656 465542147 465542483 1.430000e-133 486
4 TraesCS3B01G271900 chr3D 92.920 2288 78 28 324 2578 339254018 339251782 0.000000e+00 3251
5 TraesCS3B01G271900 chr3D 94.159 856 49 1 2579 3434 339250459 339249605 0.000000e+00 1303
6 TraesCS3B01G271900 chr2A 99.692 325 1 0 1 325 30318466 30318142 2.280000e-166 595
7 TraesCS3B01G271900 chr2A 100.000 298 0 0 27 324 30323549 30323252 5.010000e-153 551
8 TraesCS3B01G271900 chrUn 98.795 332 3 1 1 332 31981450 31981780 1.060000e-164 590
9 TraesCS3B01G271900 chrUn 99.667 300 1 0 25 324 31976388 31976687 1.800000e-152 549
10 TraesCS3B01G271900 chr4B 99.385 325 1 1 1 325 14021505 14021182 3.820000e-164 588
11 TraesCS3B01G271900 chr4B 99.667 300 1 0 25 324 14026590 14026291 1.800000e-152 549
12 TraesCS3B01G271900 chr4A 91.515 330 24 3 1 329 198712126 198711800 5.230000e-123 451
13 TraesCS3B01G271900 chr4A 90.365 301 25 3 25 324 198717191 198716894 3.210000e-105 392
14 TraesCS3B01G271900 chr2B 92.453 53 3 1 2675 2727 711224950 711224899 1.320000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G271900 chr3B 437802693 437806126 3433 True 6342 6342 100.0000 1 3434 1 chr3B.!!$R1 3433
1 TraesCS3B01G271900 chr3A 465542147 465545077 2930 False 2089 3692 92.8280 324 3189 2 chr3A.!!$F1 2865
2 TraesCS3B01G271900 chr3D 339249605 339254018 4413 True 2277 3251 93.5395 324 3434 2 chr3D.!!$R1 3110

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.034059 CAAGCCCTAGGGTAGCGATG 59.966 60.0 28.96 14.5 37.65 3.84 F
270 271 0.034756 TGAAGCATGCCGTGTACTGT 59.965 50.0 15.66 0.0 0.00 3.55 F
1862 1926 0.100861 GCGAGGAAGACTTCTACCGG 59.899 60.0 14.72 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1803 1867 0.603975 AGCTTCTCCTTGTTCCGCAC 60.604 55.000 0.0 0.0 0.00 5.34 R
2195 2264 1.502190 GCCAAACGGCTGCTTAGAC 59.498 57.895 0.0 0.0 46.85 2.59 R
3325 4745 0.107993 GTGGCTACGTTTACCCCTCC 60.108 60.000 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.563471 ACCGACGAAGCTCTGAATAC 57.437 50.000 0.00 0.00 0.00 1.89
20 21 1.134560 ACCGACGAAGCTCTGAATACC 59.865 52.381 0.00 0.00 0.00 2.73
21 22 1.134367 CCGACGAAGCTCTGAATACCA 59.866 52.381 0.00 0.00 0.00 3.25
22 23 2.416836 CCGACGAAGCTCTGAATACCAA 60.417 50.000 0.00 0.00 0.00 3.67
23 24 3.448686 CGACGAAGCTCTGAATACCAAT 58.551 45.455 0.00 0.00 0.00 3.16
24 25 3.865745 CGACGAAGCTCTGAATACCAATT 59.134 43.478 0.00 0.00 0.00 2.32
25 26 4.259970 CGACGAAGCTCTGAATACCAATTG 60.260 45.833 0.00 0.00 0.00 2.32
26 27 4.579869 ACGAAGCTCTGAATACCAATTGT 58.420 39.130 4.43 0.00 0.00 2.71
27 28 5.730550 ACGAAGCTCTGAATACCAATTGTA 58.269 37.500 4.43 0.00 0.00 2.41
28 29 6.170506 ACGAAGCTCTGAATACCAATTGTAA 58.829 36.000 4.43 0.00 31.94 2.41
29 30 6.823689 ACGAAGCTCTGAATACCAATTGTAAT 59.176 34.615 4.43 0.00 31.94 1.89
30 31 7.985184 ACGAAGCTCTGAATACCAATTGTAATA 59.015 33.333 4.43 0.00 31.94 0.98
31 32 8.276325 CGAAGCTCTGAATACCAATTGTAATAC 58.724 37.037 4.43 0.00 31.94 1.89
32 33 8.451908 AAGCTCTGAATACCAATTGTAATACC 57.548 34.615 4.43 0.00 31.94 2.73
33 34 6.998673 AGCTCTGAATACCAATTGTAATACCC 59.001 38.462 4.43 0.00 31.94 3.69
34 35 6.770785 GCTCTGAATACCAATTGTAATACCCA 59.229 38.462 4.43 0.00 31.94 4.51
35 36 7.284489 GCTCTGAATACCAATTGTAATACCCAA 59.716 37.037 4.43 0.00 31.94 4.12
36 37 8.746052 TCTGAATACCAATTGTAATACCCAAG 57.254 34.615 4.43 0.00 31.94 3.61
37 38 7.284489 TCTGAATACCAATTGTAATACCCAAGC 59.716 37.037 4.43 0.00 31.94 4.01
38 39 6.322712 TGAATACCAATTGTAATACCCAAGCC 59.677 38.462 4.43 0.00 31.94 4.35
39 40 3.371034 ACCAATTGTAATACCCAAGCCC 58.629 45.455 4.43 0.00 0.00 5.19
40 41 3.012388 ACCAATTGTAATACCCAAGCCCT 59.988 43.478 4.43 0.00 0.00 5.19
41 42 4.230964 ACCAATTGTAATACCCAAGCCCTA 59.769 41.667 4.43 0.00 0.00 3.53
42 43 4.827284 CCAATTGTAATACCCAAGCCCTAG 59.173 45.833 4.43 0.00 0.00 3.02
43 44 4.724279 ATTGTAATACCCAAGCCCTAGG 57.276 45.455 0.06 0.06 0.00 3.02
48 49 3.241520 CCCAAGCCCTAGGGTAGC 58.758 66.667 28.96 14.84 40.34 3.58
49 50 2.808206 CCCAAGCCCTAGGGTAGCG 61.808 68.421 28.96 14.61 40.34 4.26
50 51 1.760875 CCAAGCCCTAGGGTAGCGA 60.761 63.158 28.96 0.00 37.65 4.93
51 52 1.122019 CCAAGCCCTAGGGTAGCGAT 61.122 60.000 28.96 6.83 37.65 4.58
52 53 0.034059 CAAGCCCTAGGGTAGCGATG 59.966 60.000 28.96 14.50 37.65 3.84
53 54 1.122019 AAGCCCTAGGGTAGCGATGG 61.122 60.000 28.96 0.27 37.65 3.51
54 55 1.533273 GCCCTAGGGTAGCGATGGA 60.533 63.158 28.96 0.00 37.65 3.41
55 56 1.536943 GCCCTAGGGTAGCGATGGAG 61.537 65.000 28.96 0.00 37.65 3.86
56 57 0.112606 CCCTAGGGTAGCGATGGAGA 59.887 60.000 20.88 0.00 0.00 3.71
57 58 1.480683 CCCTAGGGTAGCGATGGAGAA 60.481 57.143 20.88 0.00 0.00 2.87
58 59 2.530701 CCTAGGGTAGCGATGGAGAAT 58.469 52.381 0.00 0.00 0.00 2.40
59 60 2.900546 CCTAGGGTAGCGATGGAGAATT 59.099 50.000 0.00 0.00 0.00 2.17
60 61 2.918712 AGGGTAGCGATGGAGAATTG 57.081 50.000 0.00 0.00 0.00 2.32
61 62 1.417890 AGGGTAGCGATGGAGAATTGG 59.582 52.381 0.00 0.00 0.00 3.16
62 63 1.543429 GGGTAGCGATGGAGAATTGGG 60.543 57.143 0.00 0.00 0.00 4.12
63 64 1.543429 GGTAGCGATGGAGAATTGGGG 60.543 57.143 0.00 0.00 0.00 4.96
64 65 1.416401 GTAGCGATGGAGAATTGGGGA 59.584 52.381 0.00 0.00 0.00 4.81
65 66 1.143813 AGCGATGGAGAATTGGGGAT 58.856 50.000 0.00 0.00 0.00 3.85
66 67 1.072965 AGCGATGGAGAATTGGGGATC 59.927 52.381 0.00 0.00 0.00 3.36
67 68 1.884067 GCGATGGAGAATTGGGGATCC 60.884 57.143 1.92 1.92 0.00 3.36
68 69 1.609061 CGATGGAGAATTGGGGATCCG 60.609 57.143 5.45 0.00 35.24 4.18
69 70 0.773644 ATGGAGAATTGGGGATCCGG 59.226 55.000 5.45 0.00 35.24 5.14
70 71 0.327095 TGGAGAATTGGGGATCCGGA 60.327 55.000 6.61 6.61 35.24 5.14
71 72 0.398318 GGAGAATTGGGGATCCGGAG 59.602 60.000 11.34 0.00 35.24 4.63
72 73 1.424638 GAGAATTGGGGATCCGGAGA 58.575 55.000 11.34 0.00 35.24 3.71
73 74 1.768870 GAGAATTGGGGATCCGGAGAA 59.231 52.381 11.34 0.00 35.24 2.87
74 75 2.172717 GAGAATTGGGGATCCGGAGAAA 59.827 50.000 11.34 0.00 35.24 2.52
75 76 2.173569 AGAATTGGGGATCCGGAGAAAG 59.826 50.000 11.34 0.00 35.24 2.62
76 77 0.846693 ATTGGGGATCCGGAGAAAGG 59.153 55.000 11.34 0.00 35.24 3.11
77 78 1.279025 TTGGGGATCCGGAGAAAGGG 61.279 60.000 11.34 0.00 35.24 3.95
78 79 2.452937 GGGGATCCGGAGAAAGGGG 61.453 68.421 11.34 0.00 0.00 4.79
79 80 1.384082 GGGATCCGGAGAAAGGGGA 60.384 63.158 11.34 0.00 0.00 4.81
80 81 1.411651 GGGATCCGGAGAAAGGGGAG 61.412 65.000 11.34 0.00 32.43 4.30
81 82 1.448069 GATCCGGAGAAAGGGGAGC 59.552 63.158 11.34 0.00 32.43 4.70
82 83 1.306997 ATCCGGAGAAAGGGGAGCA 60.307 57.895 11.34 0.00 32.43 4.26
83 84 0.914417 ATCCGGAGAAAGGGGAGCAA 60.914 55.000 11.34 0.00 32.43 3.91
84 85 1.377333 CCGGAGAAAGGGGAGCAAC 60.377 63.158 0.00 0.00 0.00 4.17
85 86 1.679898 CGGAGAAAGGGGAGCAACT 59.320 57.895 0.00 0.00 0.00 3.16
86 87 0.036875 CGGAGAAAGGGGAGCAACTT 59.963 55.000 0.00 0.00 0.00 2.66
87 88 1.539157 GGAGAAAGGGGAGCAACTTG 58.461 55.000 0.00 0.00 0.00 3.16
88 89 1.539157 GAGAAAGGGGAGCAACTTGG 58.461 55.000 0.00 0.00 0.00 3.61
89 90 1.073923 GAGAAAGGGGAGCAACTTGGA 59.926 52.381 0.00 0.00 0.00 3.53
90 91 1.074566 AGAAAGGGGAGCAACTTGGAG 59.925 52.381 0.00 0.00 0.00 3.86
91 92 1.073923 GAAAGGGGAGCAACTTGGAGA 59.926 52.381 0.00 0.00 0.00 3.71
92 93 1.149101 AAGGGGAGCAACTTGGAGAA 58.851 50.000 0.00 0.00 0.00 2.87
93 94 0.695347 AGGGGAGCAACTTGGAGAAG 59.305 55.000 0.00 0.00 35.07 2.85
94 95 0.693049 GGGGAGCAACTTGGAGAAGA 59.307 55.000 0.00 0.00 32.98 2.87
95 96 1.073923 GGGGAGCAACTTGGAGAAGAA 59.926 52.381 0.00 0.00 32.98 2.52
96 97 2.431454 GGGAGCAACTTGGAGAAGAAG 58.569 52.381 0.00 0.00 32.98 2.85
97 98 1.809547 GGAGCAACTTGGAGAAGAAGC 59.190 52.381 0.00 0.00 34.70 3.86
98 99 2.498167 GAGCAACTTGGAGAAGAAGCA 58.502 47.619 0.00 0.00 35.99 3.91
99 100 2.483491 GAGCAACTTGGAGAAGAAGCAG 59.517 50.000 0.00 0.00 35.99 4.24
100 101 1.538950 GCAACTTGGAGAAGAAGCAGG 59.461 52.381 0.00 0.00 34.66 4.85
101 102 2.811873 GCAACTTGGAGAAGAAGCAGGA 60.812 50.000 0.00 0.00 34.66 3.86
102 103 3.480470 CAACTTGGAGAAGAAGCAGGAA 58.520 45.455 0.00 0.00 32.98 3.36
103 104 3.415457 ACTTGGAGAAGAAGCAGGAAG 57.585 47.619 0.00 0.00 32.98 3.46
104 105 2.039613 ACTTGGAGAAGAAGCAGGAAGG 59.960 50.000 0.00 0.00 32.98 3.46
105 106 1.734655 TGGAGAAGAAGCAGGAAGGT 58.265 50.000 0.00 0.00 0.00 3.50
106 107 2.902608 TGGAGAAGAAGCAGGAAGGTA 58.097 47.619 0.00 0.00 0.00 3.08
107 108 2.834549 TGGAGAAGAAGCAGGAAGGTAG 59.165 50.000 0.00 0.00 0.00 3.18
108 109 2.169561 GGAGAAGAAGCAGGAAGGTAGG 59.830 54.545 0.00 0.00 0.00 3.18
109 110 3.100671 GAGAAGAAGCAGGAAGGTAGGA 58.899 50.000 0.00 0.00 0.00 2.94
110 111 3.103742 AGAAGAAGCAGGAAGGTAGGAG 58.896 50.000 0.00 0.00 0.00 3.69
111 112 2.930109 AGAAGCAGGAAGGTAGGAGA 57.070 50.000 0.00 0.00 0.00 3.71
112 113 3.191888 AGAAGCAGGAAGGTAGGAGAA 57.808 47.619 0.00 0.00 0.00 2.87
113 114 3.103742 AGAAGCAGGAAGGTAGGAGAAG 58.896 50.000 0.00 0.00 0.00 2.85
114 115 1.199615 AGCAGGAAGGTAGGAGAAGC 58.800 55.000 0.00 0.00 0.00 3.86
115 116 0.905357 GCAGGAAGGTAGGAGAAGCA 59.095 55.000 0.00 0.00 0.00 3.91
116 117 1.279271 GCAGGAAGGTAGGAGAAGCAA 59.721 52.381 0.00 0.00 0.00 3.91
117 118 2.092699 GCAGGAAGGTAGGAGAAGCAAT 60.093 50.000 0.00 0.00 0.00 3.56
118 119 3.623453 GCAGGAAGGTAGGAGAAGCAATT 60.623 47.826 0.00 0.00 0.00 2.32
119 120 3.944015 CAGGAAGGTAGGAGAAGCAATTG 59.056 47.826 0.00 0.00 0.00 2.32
120 121 3.589288 AGGAAGGTAGGAGAAGCAATTGT 59.411 43.478 7.40 0.00 0.00 2.71
121 122 4.043435 AGGAAGGTAGGAGAAGCAATTGTT 59.957 41.667 7.40 0.00 0.00 2.83
122 123 4.767409 GGAAGGTAGGAGAAGCAATTGTTT 59.233 41.667 7.30 7.30 0.00 2.83
123 124 5.106118 GGAAGGTAGGAGAAGCAATTGTTTC 60.106 44.000 23.09 23.09 35.81 2.78
124 125 5.248380 AGGTAGGAGAAGCAATTGTTTCT 57.752 39.130 30.42 30.42 46.05 2.52
125 126 6.374417 AGGTAGGAGAAGCAATTGTTTCTA 57.626 37.500 30.16 16.85 43.96 2.10
126 127 6.963322 AGGTAGGAGAAGCAATTGTTTCTAT 58.037 36.000 30.16 24.18 43.96 1.98
127 128 7.406104 AGGTAGGAGAAGCAATTGTTTCTATT 58.594 34.615 30.16 23.53 43.96 1.73
128 129 7.554476 AGGTAGGAGAAGCAATTGTTTCTATTC 59.446 37.037 30.16 22.72 43.96 1.75
129 130 7.554476 GGTAGGAGAAGCAATTGTTTCTATTCT 59.446 37.037 30.16 26.58 43.96 2.40
130 131 8.951243 GTAGGAGAAGCAATTGTTTCTATTCTT 58.049 33.333 30.16 19.51 43.96 2.52
132 133 9.520515 AGGAGAAGCAATTGTTTCTATTCTTAA 57.479 29.630 30.16 0.00 43.96 1.85
135 136 9.994432 AGAAGCAATTGTTTCTATTCTTAATCG 57.006 29.630 29.38 0.00 42.51 3.34
136 137 9.988350 GAAGCAATTGTTTCTATTCTTAATCGA 57.012 29.630 23.21 0.00 33.31 3.59
143 144 9.542462 TTGTTTCTATTCTTAATCGATACCCAG 57.458 33.333 0.00 0.00 0.00 4.45
144 145 8.701895 TGTTTCTATTCTTAATCGATACCCAGT 58.298 33.333 0.00 0.00 0.00 4.00
147 148 8.929260 TCTATTCTTAATCGATACCCAGTACA 57.071 34.615 0.00 0.00 0.00 2.90
148 149 9.011095 TCTATTCTTAATCGATACCCAGTACAG 57.989 37.037 0.00 0.00 0.00 2.74
149 150 7.834881 ATTCTTAATCGATACCCAGTACAGA 57.165 36.000 0.00 0.00 0.00 3.41
150 151 6.879276 TCTTAATCGATACCCAGTACAGAG 57.121 41.667 0.00 0.00 0.00 3.35
151 152 5.768662 TCTTAATCGATACCCAGTACAGAGG 59.231 44.000 0.00 0.00 0.00 3.69
152 153 3.878237 ATCGATACCCAGTACAGAGGA 57.122 47.619 0.00 0.00 0.00 3.71
153 154 3.210232 TCGATACCCAGTACAGAGGAG 57.790 52.381 0.00 0.00 0.00 3.69
154 155 2.775960 TCGATACCCAGTACAGAGGAGA 59.224 50.000 0.00 0.00 0.00 3.71
155 156 3.142951 CGATACCCAGTACAGAGGAGAG 58.857 54.545 0.00 0.00 0.00 3.20
156 157 3.181453 CGATACCCAGTACAGAGGAGAGA 60.181 52.174 0.00 0.00 0.00 3.10
157 158 2.517998 ACCCAGTACAGAGGAGAGAC 57.482 55.000 0.00 0.00 0.00 3.36
158 159 1.340211 ACCCAGTACAGAGGAGAGACG 60.340 57.143 0.00 0.00 0.00 4.18
159 160 0.736053 CCAGTACAGAGGAGAGACGC 59.264 60.000 0.00 0.00 0.00 5.19
160 161 1.454201 CAGTACAGAGGAGAGACGCA 58.546 55.000 0.00 0.00 0.00 5.24
161 162 1.400142 CAGTACAGAGGAGAGACGCAG 59.600 57.143 0.00 0.00 0.00 5.18
162 163 0.099791 GTACAGAGGAGAGACGCAGC 59.900 60.000 0.00 0.00 0.00 5.25
163 164 0.034960 TACAGAGGAGAGACGCAGCT 60.035 55.000 0.00 0.00 0.00 4.24
164 165 0.897863 ACAGAGGAGAGACGCAGCTT 60.898 55.000 0.00 0.00 0.00 3.74
165 166 1.098869 CAGAGGAGAGACGCAGCTTA 58.901 55.000 0.00 0.00 0.00 3.09
166 167 1.680735 CAGAGGAGAGACGCAGCTTAT 59.319 52.381 0.00 0.00 0.00 1.73
167 168 2.881513 CAGAGGAGAGACGCAGCTTATA 59.118 50.000 0.00 0.00 0.00 0.98
168 169 3.505680 CAGAGGAGAGACGCAGCTTATAT 59.494 47.826 0.00 0.00 0.00 0.86
169 170 3.505680 AGAGGAGAGACGCAGCTTATATG 59.494 47.826 0.00 0.00 0.00 1.78
170 171 3.491342 AGGAGAGACGCAGCTTATATGA 58.509 45.455 0.00 0.00 0.00 2.15
171 172 4.085733 AGGAGAGACGCAGCTTATATGAT 58.914 43.478 0.00 0.00 0.00 2.45
172 173 4.157656 AGGAGAGACGCAGCTTATATGATC 59.842 45.833 0.00 0.00 0.00 2.92
173 174 4.090138 AGAGACGCAGCTTATATGATCG 57.910 45.455 0.00 0.00 0.00 3.69
174 175 2.596419 GAGACGCAGCTTATATGATCGC 59.404 50.000 0.00 0.00 0.00 4.58
175 176 2.230025 AGACGCAGCTTATATGATCGCT 59.770 45.455 0.00 0.00 0.00 4.93
176 177 2.596419 GACGCAGCTTATATGATCGCTC 59.404 50.000 0.00 0.00 0.00 5.03
177 178 1.581153 CGCAGCTTATATGATCGCTCG 59.419 52.381 0.00 0.00 0.00 5.03
178 179 1.322936 GCAGCTTATATGATCGCTCGC 59.677 52.381 0.00 0.00 0.00 5.03
179 180 2.873609 CAGCTTATATGATCGCTCGCT 58.126 47.619 0.00 0.00 0.00 4.93
180 181 3.249091 CAGCTTATATGATCGCTCGCTT 58.751 45.455 0.00 0.00 0.00 4.68
181 182 4.415735 CAGCTTATATGATCGCTCGCTTA 58.584 43.478 0.00 0.00 0.00 3.09
182 183 4.264145 CAGCTTATATGATCGCTCGCTTAC 59.736 45.833 0.00 0.00 0.00 2.34
183 184 4.082733 AGCTTATATGATCGCTCGCTTACA 60.083 41.667 0.00 0.00 0.00 2.41
184 185 4.800993 GCTTATATGATCGCTCGCTTACAT 59.199 41.667 0.00 0.00 0.00 2.29
185 186 5.276114 GCTTATATGATCGCTCGCTTACATG 60.276 44.000 0.00 0.00 0.00 3.21
186 187 1.788258 ATGATCGCTCGCTTACATGG 58.212 50.000 0.00 0.00 0.00 3.66
187 188 0.249447 TGATCGCTCGCTTACATGGG 60.249 55.000 0.00 0.00 0.00 4.00
188 189 1.560860 GATCGCTCGCTTACATGGGC 61.561 60.000 0.00 0.00 0.00 5.36
189 190 2.996168 ATCGCTCGCTTACATGGGCC 62.996 60.000 0.00 0.00 0.00 5.80
190 191 2.190578 GCTCGCTTACATGGGCCT 59.809 61.111 4.53 0.00 0.00 5.19
191 192 2.182842 GCTCGCTTACATGGGCCTG 61.183 63.158 4.53 3.00 0.00 4.85
192 193 1.524621 CTCGCTTACATGGGCCTGG 60.525 63.158 4.53 0.00 0.00 4.45
193 194 2.516930 CGCTTACATGGGCCTGGG 60.517 66.667 4.53 0.00 0.00 4.45
194 195 2.834968 GCTTACATGGGCCTGGGC 60.835 66.667 12.58 12.58 41.06 5.36
216 217 3.497879 GCGGTCAGCCCAACATAC 58.502 61.111 0.00 0.00 40.81 2.39
217 218 1.078426 GCGGTCAGCCCAACATACT 60.078 57.895 0.00 0.00 40.81 2.12
218 219 1.090052 GCGGTCAGCCCAACATACTC 61.090 60.000 0.00 0.00 40.81 2.59
219 220 0.249120 CGGTCAGCCCAACATACTCA 59.751 55.000 0.00 0.00 0.00 3.41
220 221 1.739067 GGTCAGCCCAACATACTCAC 58.261 55.000 0.00 0.00 0.00 3.51
221 222 1.003118 GGTCAGCCCAACATACTCACA 59.997 52.381 0.00 0.00 0.00 3.58
222 223 2.076863 GTCAGCCCAACATACTCACAC 58.923 52.381 0.00 0.00 0.00 3.82
223 224 1.977854 TCAGCCCAACATACTCACACT 59.022 47.619 0.00 0.00 0.00 3.55
224 225 2.028112 TCAGCCCAACATACTCACACTC 60.028 50.000 0.00 0.00 0.00 3.51
225 226 2.027745 CAGCCCAACATACTCACACTCT 60.028 50.000 0.00 0.00 0.00 3.24
226 227 2.027745 AGCCCAACATACTCACACTCTG 60.028 50.000 0.00 0.00 0.00 3.35
227 228 2.350522 CCCAACATACTCACACTCTGC 58.649 52.381 0.00 0.00 0.00 4.26
228 229 2.350522 CCAACATACTCACACTCTGCC 58.649 52.381 0.00 0.00 0.00 4.85
229 230 2.350522 CAACATACTCACACTCTGCCC 58.649 52.381 0.00 0.00 0.00 5.36
230 231 1.644509 ACATACTCACACTCTGCCCA 58.355 50.000 0.00 0.00 0.00 5.36
231 232 1.276421 ACATACTCACACTCTGCCCAC 59.724 52.381 0.00 0.00 0.00 4.61
232 233 1.276138 CATACTCACACTCTGCCCACA 59.724 52.381 0.00 0.00 0.00 4.17
233 234 0.679505 TACTCACACTCTGCCCACAC 59.320 55.000 0.00 0.00 0.00 3.82
234 235 1.665916 CTCACACTCTGCCCACACG 60.666 63.158 0.00 0.00 0.00 4.49
235 236 3.349006 CACACTCTGCCCACACGC 61.349 66.667 0.00 0.00 0.00 5.34
236 237 3.860605 ACACTCTGCCCACACGCA 61.861 61.111 0.00 0.00 37.19 5.24
237 238 3.349006 CACTCTGCCCACACGCAC 61.349 66.667 0.00 0.00 34.35 5.34
238 239 3.860605 ACTCTGCCCACACGCACA 61.861 61.111 0.00 0.00 34.35 4.57
239 240 3.349006 CTCTGCCCACACGCACAC 61.349 66.667 0.00 0.00 34.35 3.82
240 241 3.814615 CTCTGCCCACACGCACACT 62.815 63.158 0.00 0.00 34.35 3.55
241 242 2.030412 CTGCCCACACGCACACTA 59.970 61.111 0.00 0.00 34.35 2.74
242 243 1.375908 CTGCCCACACGCACACTAT 60.376 57.895 0.00 0.00 34.35 2.12
243 244 0.108377 CTGCCCACACGCACACTATA 60.108 55.000 0.00 0.00 34.35 1.31
244 245 0.108377 TGCCCACACGCACACTATAG 60.108 55.000 0.00 0.00 32.62 1.31
245 246 1.429148 GCCCACACGCACACTATAGC 61.429 60.000 0.00 0.00 0.00 2.97
246 247 0.810031 CCCACACGCACACTATAGCC 60.810 60.000 0.00 0.00 0.00 3.93
247 248 0.175760 CCACACGCACACTATAGCCT 59.824 55.000 0.00 0.00 0.00 4.58
248 249 1.407618 CCACACGCACACTATAGCCTA 59.592 52.381 0.00 0.00 0.00 3.93
249 250 2.460918 CACACGCACACTATAGCCTAC 58.539 52.381 0.00 0.00 0.00 3.18
250 251 1.407979 ACACGCACACTATAGCCTACC 59.592 52.381 0.00 0.00 0.00 3.18
251 252 1.681793 CACGCACACTATAGCCTACCT 59.318 52.381 0.00 0.00 0.00 3.08
252 253 1.681793 ACGCACACTATAGCCTACCTG 59.318 52.381 0.00 0.00 0.00 4.00
253 254 1.954382 CGCACACTATAGCCTACCTGA 59.046 52.381 0.00 0.00 0.00 3.86
254 255 2.361119 CGCACACTATAGCCTACCTGAA 59.639 50.000 0.00 0.00 0.00 3.02
255 256 3.551046 CGCACACTATAGCCTACCTGAAG 60.551 52.174 0.00 0.00 0.00 3.02
256 257 3.800604 GCACACTATAGCCTACCTGAAGC 60.801 52.174 0.00 0.00 0.00 3.86
257 258 3.384789 CACACTATAGCCTACCTGAAGCA 59.615 47.826 0.00 0.00 0.00 3.91
258 259 4.039730 CACACTATAGCCTACCTGAAGCAT 59.960 45.833 0.00 0.00 0.00 3.79
259 260 4.039730 ACACTATAGCCTACCTGAAGCATG 59.960 45.833 0.00 0.00 0.00 4.06
260 261 2.557920 ATAGCCTACCTGAAGCATGC 57.442 50.000 10.51 10.51 0.00 4.06
261 262 0.469917 TAGCCTACCTGAAGCATGCC 59.530 55.000 15.66 0.00 0.00 4.40
262 263 2.182842 GCCTACCTGAAGCATGCCG 61.183 63.158 15.66 0.13 0.00 5.69
263 264 1.221840 CCTACCTGAAGCATGCCGT 59.778 57.895 15.66 1.78 0.00 5.68
264 265 1.091771 CCTACCTGAAGCATGCCGTG 61.092 60.000 15.66 2.21 0.00 4.94
265 266 0.391661 CTACCTGAAGCATGCCGTGT 60.392 55.000 15.66 7.59 0.00 4.49
266 267 0.899019 TACCTGAAGCATGCCGTGTA 59.101 50.000 15.66 6.57 0.00 2.90
267 268 0.673644 ACCTGAAGCATGCCGTGTAC 60.674 55.000 15.66 0.34 0.00 2.90
268 269 0.391661 CCTGAAGCATGCCGTGTACT 60.392 55.000 15.66 0.00 0.00 2.73
269 270 0.723414 CTGAAGCATGCCGTGTACTG 59.277 55.000 15.66 0.53 0.00 2.74
270 271 0.034756 TGAAGCATGCCGTGTACTGT 59.965 50.000 15.66 0.00 0.00 3.55
271 272 1.273886 TGAAGCATGCCGTGTACTGTA 59.726 47.619 15.66 0.00 0.00 2.74
272 273 1.927174 GAAGCATGCCGTGTACTGTAG 59.073 52.381 15.66 0.00 0.00 2.74
273 274 0.460284 AGCATGCCGTGTACTGTAGC 60.460 55.000 15.66 0.00 0.00 3.58
274 275 1.429148 GCATGCCGTGTACTGTAGCC 61.429 60.000 6.36 0.00 0.00 3.93
275 276 0.108377 CATGCCGTGTACTGTAGCCA 60.108 55.000 0.00 0.00 0.00 4.75
276 277 0.611200 ATGCCGTGTACTGTAGCCAA 59.389 50.000 0.00 0.00 0.00 4.52
277 278 0.611200 TGCCGTGTACTGTAGCCAAT 59.389 50.000 0.00 0.00 0.00 3.16
278 279 1.287425 GCCGTGTACTGTAGCCAATC 58.713 55.000 0.00 0.00 0.00 2.67
279 280 1.556564 CCGTGTACTGTAGCCAATCG 58.443 55.000 0.00 0.00 0.00 3.34
280 281 1.556564 CGTGTACTGTAGCCAATCGG 58.443 55.000 0.00 0.00 0.00 4.18
281 282 1.801395 CGTGTACTGTAGCCAATCGGG 60.801 57.143 0.00 0.00 40.85 5.14
283 284 1.479323 TGTACTGTAGCCAATCGGGTC 59.521 52.381 0.00 0.00 43.75 4.46
284 285 1.755380 GTACTGTAGCCAATCGGGTCT 59.245 52.381 0.00 0.00 43.75 3.85
285 286 0.537188 ACTGTAGCCAATCGGGTCTG 59.463 55.000 0.00 0.00 43.75 3.51
286 287 0.811616 CTGTAGCCAATCGGGTCTGC 60.812 60.000 0.00 0.00 43.75 4.26
287 288 1.264749 TGTAGCCAATCGGGTCTGCT 61.265 55.000 0.00 0.00 43.75 4.24
288 289 0.811616 GTAGCCAATCGGGTCTGCTG 60.812 60.000 0.00 0.00 43.75 4.41
289 290 2.593468 TAGCCAATCGGGTCTGCTGC 62.593 60.000 0.00 0.00 43.75 5.25
290 291 2.046023 CCAATCGGGTCTGCTGCA 60.046 61.111 0.88 0.88 0.00 4.41
291 292 2.110967 CCAATCGGGTCTGCTGCAG 61.111 63.158 23.31 23.31 0.00 4.41
292 293 1.376424 CAATCGGGTCTGCTGCAGT 60.376 57.895 27.24 5.96 32.61 4.40
293 294 0.957395 CAATCGGGTCTGCTGCAGTT 60.957 55.000 27.24 11.81 32.61 3.16
294 295 0.613260 AATCGGGTCTGCTGCAGTTA 59.387 50.000 27.24 8.26 32.61 2.24
295 296 0.613260 ATCGGGTCTGCTGCAGTTAA 59.387 50.000 27.24 7.49 32.61 2.01
296 297 0.613260 TCGGGTCTGCTGCAGTTAAT 59.387 50.000 27.24 0.00 32.61 1.40
297 298 1.009829 CGGGTCTGCTGCAGTTAATC 58.990 55.000 27.24 10.30 32.61 1.75
298 299 1.009829 GGGTCTGCTGCAGTTAATCG 58.990 55.000 27.24 2.96 32.61 3.34
299 300 0.375106 GGTCTGCTGCAGTTAATCGC 59.625 55.000 27.24 10.84 32.61 4.58
300 301 0.375106 GTCTGCTGCAGTTAATCGCC 59.625 55.000 27.24 0.00 32.61 5.54
301 302 0.250234 TCTGCTGCAGTTAATCGCCT 59.750 50.000 27.24 0.00 32.61 5.52
302 303 0.376152 CTGCTGCAGTTAATCGCCTG 59.624 55.000 21.21 0.00 0.00 4.85
303 304 1.026182 TGCTGCAGTTAATCGCCTGG 61.026 55.000 16.64 0.00 0.00 4.45
304 305 1.723870 CTGCAGTTAATCGCCTGGC 59.276 57.895 9.11 9.11 0.00 4.85
305 306 1.002746 TGCAGTTAATCGCCTGGCA 60.003 52.632 20.29 6.38 0.00 4.92
306 307 1.026182 TGCAGTTAATCGCCTGGCAG 61.026 55.000 20.29 7.75 0.00 4.85
307 308 1.723870 CAGTTAATCGCCTGGCAGC 59.276 57.895 20.29 3.81 0.00 5.25
308 309 0.745845 CAGTTAATCGCCTGGCAGCT 60.746 55.000 20.29 3.22 0.00 4.24
309 310 0.462759 AGTTAATCGCCTGGCAGCTC 60.463 55.000 20.29 1.72 0.00 4.09
310 311 0.744414 GTTAATCGCCTGGCAGCTCA 60.744 55.000 20.29 0.00 0.00 4.26
311 312 0.744414 TTAATCGCCTGGCAGCTCAC 60.744 55.000 20.29 0.00 0.00 3.51
312 313 1.617018 TAATCGCCTGGCAGCTCACT 61.617 55.000 20.29 0.00 0.00 3.41
313 314 2.866085 AATCGCCTGGCAGCTCACTC 62.866 60.000 20.29 0.00 0.00 3.51
322 323 3.674523 AGCTCACTCGCGCTGACA 61.675 61.111 5.56 0.00 34.69 3.58
337 338 1.277557 CTGACAGGGAGGAACTTGGAG 59.722 57.143 0.00 0.00 41.55 3.86
339 340 2.158219 TGACAGGGAGGAACTTGGAGTA 60.158 50.000 0.00 0.00 41.55 2.59
437 439 2.359230 GAGGTGTGGTGAGCTGGC 60.359 66.667 0.00 0.00 0.00 4.85
475 483 8.705134 TCGGTTTGCTTATAATACATATGTTCG 58.295 33.333 14.77 0.00 0.00 3.95
666 705 7.678947 ATTGTGTTGATTTTGGTTGTTTTCA 57.321 28.000 0.00 0.00 0.00 2.69
669 708 8.190888 TGTGTTGATTTTGGTTGTTTTCATAC 57.809 30.769 0.00 0.00 0.00 2.39
670 709 7.819415 TGTGTTGATTTTGGTTGTTTTCATACA 59.181 29.630 0.00 0.00 0.00 2.29
671 710 8.113675 GTGTTGATTTTGGTTGTTTTCATACAC 58.886 33.333 0.00 0.00 0.00 2.90
676 715 3.904717 TGGTTGTTTTCATACACCCTGT 58.095 40.909 0.00 0.00 32.29 4.00
731 770 5.103940 AGTTGAGTATACTGGGCATTCCATT 60.104 40.000 10.90 0.00 46.01 3.16
732 771 4.973168 TGAGTATACTGGGCATTCCATTC 58.027 43.478 10.90 0.00 46.01 2.67
733 772 4.202461 TGAGTATACTGGGCATTCCATTCC 60.202 45.833 10.90 0.00 46.01 3.01
734 773 3.721575 AGTATACTGGGCATTCCATTCCA 59.278 43.478 4.10 0.00 46.01 3.53
735 774 3.909427 ATACTGGGCATTCCATTCCAT 57.091 42.857 0.00 0.00 46.01 3.41
829 878 3.124921 CGTAGCCCAAACGCCCAG 61.125 66.667 0.00 0.00 33.04 4.45
842 891 2.404559 ACGCCCAGATATGGAAACCTA 58.595 47.619 8.28 0.00 0.00 3.08
862 918 2.770904 GGGCTGGGATCCGGGTAA 60.771 66.667 5.45 0.00 0.00 2.85
905 961 2.466571 GCGTCACCGTAATGATTACTCG 59.533 50.000 12.94 10.13 36.15 4.18
985 1043 4.846677 CAGTATATATGTGTGACGAGCGAC 59.153 45.833 0.00 0.00 0.00 5.19
1070 1134 4.717629 CGGCGAGCAACTCCGTCA 62.718 66.667 0.00 0.00 41.31 4.35
1073 1137 2.651361 CGAGCAACTCCGTCACCT 59.349 61.111 0.00 0.00 0.00 4.00
1172 1236 2.104331 CTCATCGCGGCGTACCTT 59.896 61.111 22.90 0.66 0.00 3.50
1691 1755 1.463674 GCCGTGAAATGAACCAGGAT 58.536 50.000 0.00 0.00 0.00 3.24
1714 1778 0.804989 CATCCGGTGGAGAAACAAGC 59.195 55.000 0.00 0.00 34.05 4.01
1740 1804 2.115266 CCGGCAAACAAGAGGGGT 59.885 61.111 0.00 0.00 0.00 4.95
1803 1867 2.228822 CCGAATGACTTCTTTTGGTGGG 59.771 50.000 3.81 0.00 32.65 4.61
1821 1885 1.578206 GGTGCGGAACAAGGAGAAGC 61.578 60.000 0.00 0.00 0.00 3.86
1860 1924 2.093106 TCAGCGAGGAAGACTTCTACC 58.907 52.381 14.72 0.00 0.00 3.18
1862 1926 0.100861 GCGAGGAAGACTTCTACCGG 59.899 60.000 14.72 0.00 0.00 5.28
1988 2052 1.001048 TGGTTGACGTACGAGGAACTG 60.001 52.381 24.41 0.00 41.55 3.16
1989 2053 1.058404 GTTGACGTACGAGGAACTGC 58.942 55.000 24.41 0.00 41.55 4.40
1993 2057 1.800315 CGTACGAGGAACTGCACGG 60.800 63.158 10.44 0.00 41.55 4.94
2124 2188 6.473397 AGATGTTTTCGCTTACTCTTTGAG 57.527 37.500 0.00 0.00 35.52 3.02
2157 2226 8.553153 TGGATGTCCTTGTTATTGTCCTAATTA 58.447 33.333 0.09 0.00 36.82 1.40
2195 2264 0.392193 GTGCCACTCAGATCCCTGTG 60.392 60.000 0.00 0.00 41.16 3.66
2230 2299 1.202313 TGGCGCAACACCTGTTTTTAC 60.202 47.619 10.83 0.00 35.83 2.01
2322 2400 9.313118 GAAACAAATTTTCATCCCGCTTTATAT 57.687 29.630 0.00 0.00 0.00 0.86
2323 2401 8.647143 AACAAATTTTCATCCCGCTTTATATG 57.353 30.769 0.00 0.00 0.00 1.78
2336 2414 4.614555 CTTTATATGCAAAGCCACACGA 57.385 40.909 0.00 0.00 0.00 4.35
2478 2565 8.856153 TCAAATATGCTCAAACTTTGTAGGTA 57.144 30.769 1.44 0.00 0.00 3.08
2484 2571 4.610680 GCTCAAACTTTGTAGGTACTTGCG 60.611 45.833 1.44 0.00 41.75 4.85
2507 2600 6.363088 GCGAGATTTCATGACAAATTTCACAA 59.637 34.615 0.00 0.00 29.94 3.33
2622 4037 7.490840 AGAGCTCATATGATCATATTTCTCGG 58.509 38.462 22.97 12.39 31.98 4.63
2682 4097 9.424659 GTTTGATGTCACAAAATGTCATTTTTC 57.575 29.630 18.84 13.66 40.27 2.29
2683 4098 8.945481 TTGATGTCACAAAATGTCATTTTTCT 57.055 26.923 18.84 6.50 40.27 2.52
2713 4129 2.976185 TGTTGTTCATGAGGGTGTAGGA 59.024 45.455 0.00 0.00 0.00 2.94
2732 4148 0.766674 AACACCCAGGAGCTACCACA 60.767 55.000 0.00 0.00 42.04 4.17
2757 4173 9.784680 CACATTTCTCTTAAAAGAATCCTCATG 57.215 33.333 0.00 0.00 35.30 3.07
2765 4181 3.361281 AAGAATCCTCATGCAAGCTGA 57.639 42.857 0.00 0.00 0.00 4.26
2813 4229 0.590481 GCACCGTCAAAAACCACGAC 60.590 55.000 0.00 0.00 38.32 4.34
2881 4297 3.086143 TGGCCGAACCACCATGAT 58.914 55.556 0.00 0.00 46.36 2.45
2901 4317 2.425592 CACCAAGGCCACTCACGA 59.574 61.111 5.01 0.00 0.00 4.35
2910 4326 2.435805 AGGCCACTCACGACATATGAAT 59.564 45.455 10.38 0.00 0.00 2.57
3016 4432 2.680352 ACCGTGGAGCATCGACCT 60.680 61.111 0.00 0.00 41.12 3.85
3017 4433 2.202797 CCGTGGAGCATCGACCTG 60.203 66.667 0.00 0.00 41.12 4.00
3045 4461 0.179034 GACTGGAGGATGCCATCACC 60.179 60.000 7.06 9.73 37.30 4.02
3132 4552 2.556287 CAGCCCAAAGAACGTCGC 59.444 61.111 0.00 0.00 0.00 5.19
3133 4553 1.961277 CAGCCCAAAGAACGTCGCT 60.961 57.895 0.00 0.00 0.00 4.93
3181 4601 1.198094 TGATGACGCCCCAAGAGGAA 61.198 55.000 0.00 0.00 38.24 3.36
3185 4605 2.742372 CGCCCCAAGAGGAACACG 60.742 66.667 0.00 0.00 38.24 4.49
3203 4623 3.028366 GCGCCACCTCGAAGAAAGC 62.028 63.158 0.00 0.00 34.09 3.51
3213 4633 3.503748 CCTCGAAGAAAGCAATGGACTTT 59.496 43.478 0.00 0.00 39.99 2.66
3234 4654 1.077501 CGCAACATCCCCACCAGAT 60.078 57.895 0.00 0.00 0.00 2.90
3251 4671 3.181447 CCAGATTGTGTCCAGATATGGCT 60.181 47.826 0.00 0.00 0.00 4.75
3273 4693 2.154798 CTGCCCTCTCGTTTCGACCA 62.155 60.000 0.00 0.00 0.00 4.02
3279 4699 0.108804 TCTCGTTTCGACCATGGAGC 60.109 55.000 21.47 9.10 0.00 4.70
3307 4727 1.067295 TGTTGGCAAGAGTGGAGGAT 58.933 50.000 0.00 0.00 0.00 3.24
3310 4730 1.817099 GGCAAGAGTGGAGGATGCG 60.817 63.158 0.00 0.00 37.88 4.73
3325 4745 3.879295 AGGATGCGATCACATGTAAAAGG 59.121 43.478 0.00 0.00 0.00 3.11
3336 4756 4.461431 CACATGTAAAAGGGAGGGGTAAAC 59.539 45.833 0.00 0.00 0.00 2.01
3375 4795 0.037326 GCCGAGGTGACATTGAGTGA 60.037 55.000 0.00 0.00 0.00 3.41
3398 4818 0.114954 TCCAAGCCAGCCCAAAGAAT 59.885 50.000 0.00 0.00 0.00 2.40
3399 4819 0.248289 CCAAGCCAGCCCAAAGAATG 59.752 55.000 0.00 0.00 0.00 2.67
3402 4822 0.962356 AGCCAGCCCAAAGAATGTCG 60.962 55.000 0.00 0.00 0.00 4.35
3406 4826 0.034896 AGCCCAAAGAATGTCGTCGT 59.965 50.000 0.00 0.00 0.00 4.34
3427 4847 4.154195 CGTAGCCAGATAAAACTTGCACTT 59.846 41.667 0.00 0.00 32.13 3.16
3429 4849 4.874970 AGCCAGATAAAACTTGCACTTTG 58.125 39.130 0.00 0.00 32.13 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.134560 GGTATTCAGAGCTTCGTCGGT 59.865 52.381 0.00 0.00 0.00 4.69
1 2 1.134367 TGGTATTCAGAGCTTCGTCGG 59.866 52.381 0.00 0.00 0.00 4.79
2 3 2.561733 TGGTATTCAGAGCTTCGTCG 57.438 50.000 0.00 0.00 0.00 5.12
3 4 4.631813 ACAATTGGTATTCAGAGCTTCGTC 59.368 41.667 10.83 0.00 0.00 4.20
4 5 4.579869 ACAATTGGTATTCAGAGCTTCGT 58.420 39.130 10.83 0.00 0.00 3.85
5 6 6.662414 TTACAATTGGTATTCAGAGCTTCG 57.338 37.500 10.83 0.00 0.00 3.79
6 7 8.560374 GGTATTACAATTGGTATTCAGAGCTTC 58.440 37.037 10.83 0.00 0.00 3.86
7 8 7.502561 GGGTATTACAATTGGTATTCAGAGCTT 59.497 37.037 10.83 0.00 0.00 3.74
8 9 6.998673 GGGTATTACAATTGGTATTCAGAGCT 59.001 38.462 10.83 0.00 0.00 4.09
9 10 6.770785 TGGGTATTACAATTGGTATTCAGAGC 59.229 38.462 10.83 0.00 0.00 4.09
10 11 8.746052 TTGGGTATTACAATTGGTATTCAGAG 57.254 34.615 10.83 0.00 0.00 3.35
11 12 7.284489 GCTTGGGTATTACAATTGGTATTCAGA 59.716 37.037 10.83 0.00 0.00 3.27
12 13 7.425606 GCTTGGGTATTACAATTGGTATTCAG 58.574 38.462 10.83 0.00 0.00 3.02
13 14 6.322712 GGCTTGGGTATTACAATTGGTATTCA 59.677 38.462 10.83 0.00 0.00 2.57
14 15 6.239204 GGGCTTGGGTATTACAATTGGTATTC 60.239 42.308 10.83 0.82 0.00 1.75
15 16 5.600898 GGGCTTGGGTATTACAATTGGTATT 59.399 40.000 10.83 0.16 0.00 1.89
16 17 5.103258 AGGGCTTGGGTATTACAATTGGTAT 60.103 40.000 10.83 5.18 0.00 2.73
17 18 4.230964 AGGGCTTGGGTATTACAATTGGTA 59.769 41.667 10.83 0.00 0.00 3.25
18 19 3.012388 AGGGCTTGGGTATTACAATTGGT 59.988 43.478 10.83 0.00 0.00 3.67
19 20 3.642141 AGGGCTTGGGTATTACAATTGG 58.358 45.455 10.83 0.00 0.00 3.16
20 21 4.827284 CCTAGGGCTTGGGTATTACAATTG 59.173 45.833 3.24 3.24 0.00 2.32
21 22 4.141018 CCCTAGGGCTTGGGTATTACAATT 60.141 45.833 16.90 0.00 40.18 2.32
22 23 3.397955 CCCTAGGGCTTGGGTATTACAAT 59.602 47.826 16.90 0.00 40.18 2.71
23 24 2.781174 CCCTAGGGCTTGGGTATTACAA 59.219 50.000 16.90 0.00 40.18 2.41
24 25 2.414612 CCCTAGGGCTTGGGTATTACA 58.585 52.381 16.90 0.00 40.18 2.41
32 33 1.122019 ATCGCTACCCTAGGGCTTGG 61.122 60.000 28.88 12.62 38.49 3.61
33 34 0.034059 CATCGCTACCCTAGGGCTTG 59.966 60.000 28.88 18.19 38.49 4.01
34 35 1.122019 CCATCGCTACCCTAGGGCTT 61.122 60.000 28.88 12.26 38.49 4.35
35 36 1.534235 CCATCGCTACCCTAGGGCT 60.534 63.158 28.88 17.06 38.49 5.19
36 37 1.533273 TCCATCGCTACCCTAGGGC 60.533 63.158 28.88 13.14 38.49 5.19
37 38 0.112606 TCTCCATCGCTACCCTAGGG 59.887 60.000 27.36 27.36 39.82 3.53
38 39 1.996798 TTCTCCATCGCTACCCTAGG 58.003 55.000 0.06 0.06 0.00 3.02
39 40 3.306364 CCAATTCTCCATCGCTACCCTAG 60.306 52.174 0.00 0.00 0.00 3.02
40 41 2.632996 CCAATTCTCCATCGCTACCCTA 59.367 50.000 0.00 0.00 0.00 3.53
41 42 1.417890 CCAATTCTCCATCGCTACCCT 59.582 52.381 0.00 0.00 0.00 4.34
42 43 1.543429 CCCAATTCTCCATCGCTACCC 60.543 57.143 0.00 0.00 0.00 3.69
43 44 1.543429 CCCCAATTCTCCATCGCTACC 60.543 57.143 0.00 0.00 0.00 3.18
44 45 1.416401 TCCCCAATTCTCCATCGCTAC 59.584 52.381 0.00 0.00 0.00 3.58
45 46 1.801242 TCCCCAATTCTCCATCGCTA 58.199 50.000 0.00 0.00 0.00 4.26
46 47 1.072965 GATCCCCAATTCTCCATCGCT 59.927 52.381 0.00 0.00 0.00 4.93
47 48 1.528129 GATCCCCAATTCTCCATCGC 58.472 55.000 0.00 0.00 0.00 4.58
48 49 1.609061 CGGATCCCCAATTCTCCATCG 60.609 57.143 6.06 0.00 0.00 3.84
49 50 1.271597 CCGGATCCCCAATTCTCCATC 60.272 57.143 6.06 0.00 0.00 3.51
50 51 0.773644 CCGGATCCCCAATTCTCCAT 59.226 55.000 6.06 0.00 0.00 3.41
51 52 0.327095 TCCGGATCCCCAATTCTCCA 60.327 55.000 6.06 0.00 0.00 3.86
52 53 0.398318 CTCCGGATCCCCAATTCTCC 59.602 60.000 3.57 0.00 0.00 3.71
53 54 1.424638 TCTCCGGATCCCCAATTCTC 58.575 55.000 3.57 0.00 0.00 2.87
54 55 1.893315 TTCTCCGGATCCCCAATTCT 58.107 50.000 3.57 0.00 0.00 2.40
55 56 2.576615 CTTTCTCCGGATCCCCAATTC 58.423 52.381 3.57 0.00 0.00 2.17
56 57 1.215423 CCTTTCTCCGGATCCCCAATT 59.785 52.381 3.57 0.00 0.00 2.32
57 58 0.846693 CCTTTCTCCGGATCCCCAAT 59.153 55.000 3.57 0.00 0.00 3.16
58 59 1.279025 CCCTTTCTCCGGATCCCCAA 61.279 60.000 3.57 0.00 0.00 4.12
59 60 1.692749 CCCTTTCTCCGGATCCCCA 60.693 63.158 3.57 0.00 0.00 4.96
60 61 2.452937 CCCCTTTCTCCGGATCCCC 61.453 68.421 3.57 0.00 0.00 4.81
61 62 1.384082 TCCCCTTTCTCCGGATCCC 60.384 63.158 3.57 0.00 0.00 3.85
62 63 2.046009 GCTCCCCTTTCTCCGGATCC 62.046 65.000 3.57 0.00 0.00 3.36
63 64 1.338136 TGCTCCCCTTTCTCCGGATC 61.338 60.000 3.57 0.00 0.00 3.36
64 65 0.914417 TTGCTCCCCTTTCTCCGGAT 60.914 55.000 3.57 0.00 0.00 4.18
65 66 1.537889 TTGCTCCCCTTTCTCCGGA 60.538 57.895 2.93 2.93 0.00 5.14
66 67 1.377333 GTTGCTCCCCTTTCTCCGG 60.377 63.158 0.00 0.00 0.00 5.14
67 68 0.036875 AAGTTGCTCCCCTTTCTCCG 59.963 55.000 0.00 0.00 0.00 4.63
68 69 1.539157 CAAGTTGCTCCCCTTTCTCC 58.461 55.000 0.00 0.00 0.00 3.71
69 70 1.073923 TCCAAGTTGCTCCCCTTTCTC 59.926 52.381 0.00 0.00 0.00 2.87
70 71 1.074566 CTCCAAGTTGCTCCCCTTTCT 59.925 52.381 0.00 0.00 0.00 2.52
71 72 1.073923 TCTCCAAGTTGCTCCCCTTTC 59.926 52.381 0.00 0.00 0.00 2.62
72 73 1.149101 TCTCCAAGTTGCTCCCCTTT 58.851 50.000 0.00 0.00 0.00 3.11
73 74 1.074566 CTTCTCCAAGTTGCTCCCCTT 59.925 52.381 0.00 0.00 0.00 3.95
74 75 0.695347 CTTCTCCAAGTTGCTCCCCT 59.305 55.000 0.00 0.00 0.00 4.79
75 76 0.693049 TCTTCTCCAAGTTGCTCCCC 59.307 55.000 0.00 0.00 0.00 4.81
76 77 2.431454 CTTCTTCTCCAAGTTGCTCCC 58.569 52.381 0.00 0.00 0.00 4.30
77 78 1.809547 GCTTCTTCTCCAAGTTGCTCC 59.190 52.381 0.00 0.00 0.00 4.70
78 79 2.483491 CTGCTTCTTCTCCAAGTTGCTC 59.517 50.000 0.00 0.00 33.32 4.26
79 80 2.502295 CTGCTTCTTCTCCAAGTTGCT 58.498 47.619 0.00 0.00 33.32 3.91
80 81 1.538950 CCTGCTTCTTCTCCAAGTTGC 59.461 52.381 0.00 0.00 33.01 4.17
81 82 3.131709 TCCTGCTTCTTCTCCAAGTTG 57.868 47.619 0.00 0.00 0.00 3.16
82 83 3.497584 CCTTCCTGCTTCTTCTCCAAGTT 60.498 47.826 0.00 0.00 0.00 2.66
83 84 2.039613 CCTTCCTGCTTCTTCTCCAAGT 59.960 50.000 0.00 0.00 0.00 3.16
84 85 2.039613 ACCTTCCTGCTTCTTCTCCAAG 59.960 50.000 0.00 0.00 0.00 3.61
85 86 2.057922 ACCTTCCTGCTTCTTCTCCAA 58.942 47.619 0.00 0.00 0.00 3.53
86 87 1.734655 ACCTTCCTGCTTCTTCTCCA 58.265 50.000 0.00 0.00 0.00 3.86
87 88 2.169561 CCTACCTTCCTGCTTCTTCTCC 59.830 54.545 0.00 0.00 0.00 3.71
88 89 3.100671 TCCTACCTTCCTGCTTCTTCTC 58.899 50.000 0.00 0.00 0.00 2.87
89 90 3.103742 CTCCTACCTTCCTGCTTCTTCT 58.896 50.000 0.00 0.00 0.00 2.85
90 91 3.100671 TCTCCTACCTTCCTGCTTCTTC 58.899 50.000 0.00 0.00 0.00 2.87
91 92 3.191888 TCTCCTACCTTCCTGCTTCTT 57.808 47.619 0.00 0.00 0.00 2.52
92 93 2.930109 TCTCCTACCTTCCTGCTTCT 57.070 50.000 0.00 0.00 0.00 2.85
93 94 2.419436 GCTTCTCCTACCTTCCTGCTTC 60.419 54.545 0.00 0.00 0.00 3.86
94 95 1.557371 GCTTCTCCTACCTTCCTGCTT 59.443 52.381 0.00 0.00 0.00 3.91
95 96 1.199615 GCTTCTCCTACCTTCCTGCT 58.800 55.000 0.00 0.00 0.00 4.24
96 97 0.905357 TGCTTCTCCTACCTTCCTGC 59.095 55.000 0.00 0.00 0.00 4.85
97 98 3.922171 ATTGCTTCTCCTACCTTCCTG 57.078 47.619 0.00 0.00 0.00 3.86
98 99 3.589288 ACAATTGCTTCTCCTACCTTCCT 59.411 43.478 5.05 0.00 0.00 3.36
99 100 3.956744 ACAATTGCTTCTCCTACCTTCC 58.043 45.455 5.05 0.00 0.00 3.46
100 101 5.707764 AGAAACAATTGCTTCTCCTACCTTC 59.292 40.000 16.58 0.00 0.00 3.46
101 102 5.635120 AGAAACAATTGCTTCTCCTACCTT 58.365 37.500 16.58 0.00 0.00 3.50
102 103 5.248380 AGAAACAATTGCTTCTCCTACCT 57.752 39.130 16.58 0.00 0.00 3.08
103 104 7.554476 AGAATAGAAACAATTGCTTCTCCTACC 59.446 37.037 23.73 12.02 33.14 3.18
104 105 8.499403 AGAATAGAAACAATTGCTTCTCCTAC 57.501 34.615 23.73 14.87 33.14 3.18
106 107 9.520515 TTAAGAATAGAAACAATTGCTTCTCCT 57.479 29.630 23.73 16.90 33.14 3.69
109 110 9.994432 CGATTAAGAATAGAAACAATTGCTTCT 57.006 29.630 23.58 23.58 35.04 2.85
110 111 9.988350 TCGATTAAGAATAGAAACAATTGCTTC 57.012 29.630 12.69 12.69 0.00 3.86
117 118 9.542462 CTGGGTATCGATTAAGAATAGAAACAA 57.458 33.333 1.71 0.00 0.00 2.83
118 119 8.701895 ACTGGGTATCGATTAAGAATAGAAACA 58.298 33.333 1.71 0.00 0.00 2.83
121 122 9.358406 TGTACTGGGTATCGATTAAGAATAGAA 57.642 33.333 1.71 0.00 0.00 2.10
122 123 8.929260 TGTACTGGGTATCGATTAAGAATAGA 57.071 34.615 1.71 0.00 0.00 1.98
123 124 9.011095 TCTGTACTGGGTATCGATTAAGAATAG 57.989 37.037 1.71 0.00 0.00 1.73
124 125 8.929260 TCTGTACTGGGTATCGATTAAGAATA 57.071 34.615 1.71 0.00 0.00 1.75
125 126 7.039644 CCTCTGTACTGGGTATCGATTAAGAAT 60.040 40.741 1.71 0.00 0.00 2.40
126 127 6.264744 CCTCTGTACTGGGTATCGATTAAGAA 59.735 42.308 1.71 0.00 0.00 2.52
127 128 5.768662 CCTCTGTACTGGGTATCGATTAAGA 59.231 44.000 1.71 0.00 0.00 2.10
128 129 5.768662 TCCTCTGTACTGGGTATCGATTAAG 59.231 44.000 1.71 0.00 0.00 1.85
129 130 5.698104 TCCTCTGTACTGGGTATCGATTAA 58.302 41.667 1.71 0.00 0.00 1.40
130 131 5.072736 TCTCCTCTGTACTGGGTATCGATTA 59.927 44.000 1.71 0.00 0.00 1.75
131 132 4.141228 TCTCCTCTGTACTGGGTATCGATT 60.141 45.833 1.71 0.00 0.00 3.34
132 133 3.394940 TCTCCTCTGTACTGGGTATCGAT 59.605 47.826 2.16 2.16 0.00 3.59
133 134 2.775960 TCTCCTCTGTACTGGGTATCGA 59.224 50.000 0.00 0.00 0.00 3.59
134 135 3.142951 CTCTCCTCTGTACTGGGTATCG 58.857 54.545 0.00 0.00 0.00 2.92
135 136 4.139038 GTCTCTCCTCTGTACTGGGTATC 58.861 52.174 0.00 0.00 0.00 2.24
136 137 3.433882 CGTCTCTCCTCTGTACTGGGTAT 60.434 52.174 0.00 0.00 0.00 2.73
137 138 2.093075 CGTCTCTCCTCTGTACTGGGTA 60.093 54.545 0.00 0.00 0.00 3.69
138 139 1.340211 CGTCTCTCCTCTGTACTGGGT 60.340 57.143 0.00 0.00 0.00 4.51
139 140 1.384525 CGTCTCTCCTCTGTACTGGG 58.615 60.000 0.00 0.00 0.00 4.45
140 141 0.736053 GCGTCTCTCCTCTGTACTGG 59.264 60.000 0.00 0.00 0.00 4.00
141 142 1.400142 CTGCGTCTCTCCTCTGTACTG 59.600 57.143 0.00 0.00 0.00 2.74
142 143 1.745232 CTGCGTCTCTCCTCTGTACT 58.255 55.000 0.00 0.00 0.00 2.73
143 144 0.099791 GCTGCGTCTCTCCTCTGTAC 59.900 60.000 0.00 0.00 0.00 2.90
144 145 0.034960 AGCTGCGTCTCTCCTCTGTA 60.035 55.000 0.00 0.00 0.00 2.74
145 146 0.897863 AAGCTGCGTCTCTCCTCTGT 60.898 55.000 0.00 0.00 0.00 3.41
146 147 1.098869 TAAGCTGCGTCTCTCCTCTG 58.901 55.000 0.00 0.00 0.00 3.35
147 148 2.065899 ATAAGCTGCGTCTCTCCTCT 57.934 50.000 0.00 0.00 0.00 3.69
148 149 3.504134 TCATATAAGCTGCGTCTCTCCTC 59.496 47.826 0.00 0.00 0.00 3.71
149 150 3.491342 TCATATAAGCTGCGTCTCTCCT 58.509 45.455 0.00 0.00 0.00 3.69
150 151 3.924918 TCATATAAGCTGCGTCTCTCC 57.075 47.619 0.00 0.00 0.00 3.71
151 152 4.094911 CGATCATATAAGCTGCGTCTCTC 58.905 47.826 0.00 0.00 0.00 3.20
152 153 3.671971 GCGATCATATAAGCTGCGTCTCT 60.672 47.826 0.00 0.00 0.00 3.10
153 154 2.596419 GCGATCATATAAGCTGCGTCTC 59.404 50.000 0.00 0.00 0.00 3.36
154 155 2.230025 AGCGATCATATAAGCTGCGTCT 59.770 45.455 0.00 0.00 38.67 4.18
155 156 2.596419 GAGCGATCATATAAGCTGCGTC 59.404 50.000 0.00 0.00 40.39 5.19
156 157 2.600731 GAGCGATCATATAAGCTGCGT 58.399 47.619 0.00 0.00 40.39 5.24
157 158 1.581153 CGAGCGATCATATAAGCTGCG 59.419 52.381 0.00 0.00 40.39 5.18
158 159 1.322936 GCGAGCGATCATATAAGCTGC 59.677 52.381 0.00 0.00 40.39 5.25
159 160 2.873609 AGCGAGCGATCATATAAGCTG 58.126 47.619 0.00 0.00 40.39 4.24
160 161 3.584406 AAGCGAGCGATCATATAAGCT 57.416 42.857 0.00 0.00 43.33 3.74
161 162 4.166523 TGTAAGCGAGCGATCATATAAGC 58.833 43.478 0.00 0.00 0.00 3.09
162 163 5.230936 CCATGTAAGCGAGCGATCATATAAG 59.769 44.000 0.00 0.00 0.00 1.73
163 164 5.102313 CCATGTAAGCGAGCGATCATATAA 58.898 41.667 0.00 0.00 0.00 0.98
164 165 4.440112 CCCATGTAAGCGAGCGATCATATA 60.440 45.833 0.00 0.00 0.00 0.86
165 166 3.515630 CCATGTAAGCGAGCGATCATAT 58.484 45.455 0.00 0.00 0.00 1.78
166 167 2.352715 CCCATGTAAGCGAGCGATCATA 60.353 50.000 0.00 0.00 0.00 2.15
167 168 1.606480 CCCATGTAAGCGAGCGATCAT 60.606 52.381 0.00 0.00 0.00 2.45
168 169 0.249447 CCCATGTAAGCGAGCGATCA 60.249 55.000 0.00 0.00 0.00 2.92
169 170 1.560860 GCCCATGTAAGCGAGCGATC 61.561 60.000 0.00 0.00 0.00 3.69
170 171 1.595382 GCCCATGTAAGCGAGCGAT 60.595 57.895 0.00 0.00 0.00 4.58
171 172 2.202878 GCCCATGTAAGCGAGCGA 60.203 61.111 0.00 0.00 0.00 4.93
172 173 3.272334 GGCCCATGTAAGCGAGCG 61.272 66.667 0.00 0.00 0.00 5.03
173 174 2.182842 CAGGCCCATGTAAGCGAGC 61.183 63.158 0.00 0.00 0.00 5.03
174 175 1.524621 CCAGGCCCATGTAAGCGAG 60.525 63.158 0.00 0.00 0.00 5.03
175 176 2.589540 CCAGGCCCATGTAAGCGA 59.410 61.111 0.00 0.00 0.00 4.93
176 177 2.516930 CCCAGGCCCATGTAAGCG 60.517 66.667 0.00 0.00 0.00 4.68
177 178 2.834968 GCCCAGGCCCATGTAAGC 60.835 66.667 0.00 0.00 34.56 3.09
195 196 2.813908 GTTGGGCTGACCGCTACG 60.814 66.667 0.00 0.00 44.64 3.51
196 197 0.177141 TATGTTGGGCTGACCGCTAC 59.823 55.000 0.00 0.00 44.64 3.58
197 198 0.177141 GTATGTTGGGCTGACCGCTA 59.823 55.000 0.00 0.00 44.64 4.26
198 199 1.078426 GTATGTTGGGCTGACCGCT 60.078 57.895 0.00 0.00 44.64 5.52
199 200 1.078426 AGTATGTTGGGCTGACCGC 60.078 57.895 0.00 0.00 44.64 5.68
200 201 0.249120 TGAGTATGTTGGGCTGACCG 59.751 55.000 0.00 0.00 44.64 4.79
201 202 1.003118 TGTGAGTATGTTGGGCTGACC 59.997 52.381 0.00 0.00 40.81 4.02
202 203 2.076863 GTGTGAGTATGTTGGGCTGAC 58.923 52.381 0.00 0.00 0.00 3.51
203 204 1.977854 AGTGTGAGTATGTTGGGCTGA 59.022 47.619 0.00 0.00 0.00 4.26
204 205 2.027745 AGAGTGTGAGTATGTTGGGCTG 60.028 50.000 0.00 0.00 0.00 4.85
205 206 2.027745 CAGAGTGTGAGTATGTTGGGCT 60.028 50.000 0.00 0.00 0.00 5.19
206 207 2.350522 CAGAGTGTGAGTATGTTGGGC 58.649 52.381 0.00 0.00 0.00 5.36
207 208 2.350522 GCAGAGTGTGAGTATGTTGGG 58.649 52.381 0.00 0.00 0.00 4.12
208 209 2.350522 GGCAGAGTGTGAGTATGTTGG 58.649 52.381 0.00 0.00 0.00 3.77
209 210 2.289631 TGGGCAGAGTGTGAGTATGTTG 60.290 50.000 0.00 0.00 0.00 3.33
210 211 1.977854 TGGGCAGAGTGTGAGTATGTT 59.022 47.619 0.00 0.00 0.00 2.71
211 212 1.276421 GTGGGCAGAGTGTGAGTATGT 59.724 52.381 0.00 0.00 0.00 2.29
212 213 1.276138 TGTGGGCAGAGTGTGAGTATG 59.724 52.381 0.00 0.00 0.00 2.39
213 214 1.276421 GTGTGGGCAGAGTGTGAGTAT 59.724 52.381 0.00 0.00 0.00 2.12
214 215 0.679505 GTGTGGGCAGAGTGTGAGTA 59.320 55.000 0.00 0.00 0.00 2.59
215 216 1.447643 GTGTGGGCAGAGTGTGAGT 59.552 57.895 0.00 0.00 0.00 3.41
216 217 1.665916 CGTGTGGGCAGAGTGTGAG 60.666 63.158 0.00 0.00 0.00 3.51
217 218 2.421314 CGTGTGGGCAGAGTGTGA 59.579 61.111 0.00 0.00 0.00 3.58
218 219 3.349006 GCGTGTGGGCAGAGTGTG 61.349 66.667 0.00 0.00 0.00 3.82
219 220 3.860605 TGCGTGTGGGCAGAGTGT 61.861 61.111 0.00 0.00 38.17 3.55
220 221 3.349006 GTGCGTGTGGGCAGAGTG 61.349 66.667 0.00 0.00 44.93 3.51
221 222 3.860605 TGTGCGTGTGGGCAGAGT 61.861 61.111 0.00 0.00 44.93 3.24
222 223 2.434658 TAGTGTGCGTGTGGGCAGAG 62.435 60.000 0.00 0.00 44.93 3.35
223 224 1.826340 ATAGTGTGCGTGTGGGCAGA 61.826 55.000 0.00 0.00 44.93 4.26
224 225 0.108377 TATAGTGTGCGTGTGGGCAG 60.108 55.000 0.00 0.00 44.93 4.85
225 226 0.108377 CTATAGTGTGCGTGTGGGCA 60.108 55.000 0.00 0.00 41.45 5.36
226 227 1.429148 GCTATAGTGTGCGTGTGGGC 61.429 60.000 0.84 0.00 0.00 5.36
227 228 0.810031 GGCTATAGTGTGCGTGTGGG 60.810 60.000 0.84 0.00 0.00 4.61
228 229 0.175760 AGGCTATAGTGTGCGTGTGG 59.824 55.000 0.84 0.00 0.00 4.17
229 230 2.460918 GTAGGCTATAGTGTGCGTGTG 58.539 52.381 0.00 0.00 0.00 3.82
230 231 1.407979 GGTAGGCTATAGTGTGCGTGT 59.592 52.381 0.00 0.00 0.00 4.49
231 232 1.681793 AGGTAGGCTATAGTGTGCGTG 59.318 52.381 0.00 0.00 0.00 5.34
232 233 1.681793 CAGGTAGGCTATAGTGTGCGT 59.318 52.381 0.00 0.00 0.00 5.24
233 234 1.954382 TCAGGTAGGCTATAGTGTGCG 59.046 52.381 0.00 0.00 0.00 5.34
234 235 3.800604 GCTTCAGGTAGGCTATAGTGTGC 60.801 52.174 0.00 2.52 0.00 4.57
235 236 3.384789 TGCTTCAGGTAGGCTATAGTGTG 59.615 47.826 0.00 0.00 0.00 3.82
236 237 3.643237 TGCTTCAGGTAGGCTATAGTGT 58.357 45.455 0.00 0.00 0.00 3.55
237 238 4.564041 CATGCTTCAGGTAGGCTATAGTG 58.436 47.826 0.00 0.00 0.00 2.74
238 239 3.007398 GCATGCTTCAGGTAGGCTATAGT 59.993 47.826 11.37 0.00 34.67 2.12
239 240 3.594134 GCATGCTTCAGGTAGGCTATAG 58.406 50.000 11.37 0.00 34.67 1.31
240 241 2.303022 GGCATGCTTCAGGTAGGCTATA 59.697 50.000 18.92 0.00 37.48 1.31
241 242 1.072965 GGCATGCTTCAGGTAGGCTAT 59.927 52.381 18.92 0.00 37.48 2.97
242 243 0.469917 GGCATGCTTCAGGTAGGCTA 59.530 55.000 18.92 0.00 37.48 3.93
243 244 1.225704 GGCATGCTTCAGGTAGGCT 59.774 57.895 18.92 0.00 37.48 4.58
244 245 2.182842 CGGCATGCTTCAGGTAGGC 61.183 63.158 18.92 0.00 36.65 3.93
245 246 1.091771 CACGGCATGCTTCAGGTAGG 61.092 60.000 18.92 0.00 0.00 3.18
246 247 0.391661 ACACGGCATGCTTCAGGTAG 60.392 55.000 18.92 2.10 0.00 3.18
247 248 0.899019 TACACGGCATGCTTCAGGTA 59.101 50.000 18.92 10.35 0.00 3.08
248 249 0.673644 GTACACGGCATGCTTCAGGT 60.674 55.000 18.92 11.31 0.00 4.00
249 250 0.391661 AGTACACGGCATGCTTCAGG 60.392 55.000 18.92 5.79 0.00 3.86
250 251 0.723414 CAGTACACGGCATGCTTCAG 59.277 55.000 18.92 9.35 0.00 3.02
251 252 0.034756 ACAGTACACGGCATGCTTCA 59.965 50.000 18.92 0.00 0.00 3.02
252 253 1.927174 CTACAGTACACGGCATGCTTC 59.073 52.381 18.92 0.00 0.00 3.86
253 254 2.007049 GCTACAGTACACGGCATGCTT 61.007 52.381 18.92 1.56 0.00 3.91
254 255 0.460284 GCTACAGTACACGGCATGCT 60.460 55.000 18.92 0.00 0.00 3.79
255 256 1.429148 GGCTACAGTACACGGCATGC 61.429 60.000 9.90 9.90 0.00 4.06
256 257 0.108377 TGGCTACAGTACACGGCATG 60.108 55.000 0.00 0.00 0.00 4.06
257 258 0.611200 TTGGCTACAGTACACGGCAT 59.389 50.000 0.00 0.00 0.00 4.40
258 259 0.611200 ATTGGCTACAGTACACGGCA 59.389 50.000 0.00 0.00 0.00 5.69
259 260 1.287425 GATTGGCTACAGTACACGGC 58.713 55.000 0.00 0.00 0.00 5.68
260 261 1.556564 CGATTGGCTACAGTACACGG 58.443 55.000 0.00 0.00 0.00 4.94
261 262 1.556564 CCGATTGGCTACAGTACACG 58.443 55.000 0.00 0.00 0.00 4.49
262 263 1.206371 ACCCGATTGGCTACAGTACAC 59.794 52.381 0.00 0.00 37.83 2.90
263 264 1.479323 GACCCGATTGGCTACAGTACA 59.521 52.381 0.00 0.00 37.83 2.90
264 265 1.755380 AGACCCGATTGGCTACAGTAC 59.245 52.381 0.00 0.00 37.83 2.73
265 266 1.754803 CAGACCCGATTGGCTACAGTA 59.245 52.381 0.00 0.00 37.83 2.74
266 267 0.537188 CAGACCCGATTGGCTACAGT 59.463 55.000 0.00 0.00 37.83 3.55
267 268 0.811616 GCAGACCCGATTGGCTACAG 60.812 60.000 0.00 0.00 37.83 2.74
268 269 1.220749 GCAGACCCGATTGGCTACA 59.779 57.895 0.00 0.00 37.83 2.74
269 270 0.811616 CAGCAGACCCGATTGGCTAC 60.812 60.000 0.00 0.00 37.83 3.58
270 271 1.522092 CAGCAGACCCGATTGGCTA 59.478 57.895 0.00 0.00 37.83 3.93
271 272 2.270205 CAGCAGACCCGATTGGCT 59.730 61.111 0.00 0.00 37.83 4.75
272 273 3.512516 GCAGCAGACCCGATTGGC 61.513 66.667 0.00 0.00 37.83 4.52
273 274 2.046023 TGCAGCAGACCCGATTGG 60.046 61.111 0.00 0.00 41.37 3.16
274 275 0.957395 AACTGCAGCAGACCCGATTG 60.957 55.000 29.70 0.00 35.18 2.67
275 276 0.613260 TAACTGCAGCAGACCCGATT 59.387 50.000 29.70 13.66 35.18 3.34
276 277 0.613260 TTAACTGCAGCAGACCCGAT 59.387 50.000 29.70 1.74 35.18 4.18
277 278 0.613260 ATTAACTGCAGCAGACCCGA 59.387 50.000 29.70 9.91 35.18 5.14
278 279 1.009829 GATTAACTGCAGCAGACCCG 58.990 55.000 29.70 2.84 35.18 5.28
279 280 1.009829 CGATTAACTGCAGCAGACCC 58.990 55.000 29.70 11.34 35.18 4.46
280 281 0.375106 GCGATTAACTGCAGCAGACC 59.625 55.000 29.70 11.01 35.18 3.85
281 282 0.375106 GGCGATTAACTGCAGCAGAC 59.625 55.000 29.70 12.53 35.18 3.51
282 283 0.250234 AGGCGATTAACTGCAGCAGA 59.750 50.000 29.70 7.12 35.18 4.26
283 284 0.376152 CAGGCGATTAACTGCAGCAG 59.624 55.000 21.54 21.54 37.52 4.24
284 285 1.026182 CCAGGCGATTAACTGCAGCA 61.026 55.000 15.27 0.00 33.43 4.41
285 286 1.723870 CCAGGCGATTAACTGCAGC 59.276 57.895 15.27 0.00 33.43 5.25
286 287 1.026182 TGCCAGGCGATTAACTGCAG 61.026 55.000 13.48 13.48 33.43 4.41
287 288 1.002746 TGCCAGGCGATTAACTGCA 60.003 52.632 7.03 0.00 33.43 4.41
288 289 1.723870 CTGCCAGGCGATTAACTGC 59.276 57.895 7.03 0.00 33.43 4.40
289 290 0.745845 AGCTGCCAGGCGATTAACTG 60.746 55.000 7.03 0.00 37.29 3.16
290 291 0.462759 GAGCTGCCAGGCGATTAACT 60.463 55.000 7.03 0.00 37.29 2.24
291 292 0.744414 TGAGCTGCCAGGCGATTAAC 60.744 55.000 7.03 0.00 37.29 2.01
292 293 0.744414 GTGAGCTGCCAGGCGATTAA 60.744 55.000 7.03 0.00 37.29 1.40
293 294 1.153369 GTGAGCTGCCAGGCGATTA 60.153 57.895 7.03 0.00 37.29 1.75
294 295 2.437359 GTGAGCTGCCAGGCGATT 60.437 61.111 7.03 0.00 37.29 3.34
295 296 3.382803 GAGTGAGCTGCCAGGCGAT 62.383 63.158 7.03 0.00 37.29 4.58
296 297 4.074526 GAGTGAGCTGCCAGGCGA 62.075 66.667 7.03 0.00 37.29 5.54
306 307 3.177920 CTGTCAGCGCGAGTGAGC 61.178 66.667 12.10 7.34 41.75 4.26
307 308 2.505777 CCTGTCAGCGCGAGTGAG 60.506 66.667 12.10 0.52 0.00 3.51
308 309 4.056125 CCCTGTCAGCGCGAGTGA 62.056 66.667 12.10 9.24 0.00 3.41
309 310 3.978723 CTCCCTGTCAGCGCGAGTG 62.979 68.421 12.10 6.40 0.00 3.51
310 311 3.753434 CTCCCTGTCAGCGCGAGT 61.753 66.667 12.10 0.00 0.00 4.18
311 312 4.504916 CCTCCCTGTCAGCGCGAG 62.505 72.222 12.10 0.07 0.00 5.03
313 314 4.069232 TTCCTCCCTGTCAGCGCG 62.069 66.667 0.00 0.00 0.00 6.86
314 315 2.435059 GTTCCTCCCTGTCAGCGC 60.435 66.667 0.00 0.00 0.00 5.92
315 316 0.671781 CAAGTTCCTCCCTGTCAGCG 60.672 60.000 0.00 0.00 0.00 5.18
316 317 0.322008 CCAAGTTCCTCCCTGTCAGC 60.322 60.000 0.00 0.00 0.00 4.26
317 318 1.277557 CTCCAAGTTCCTCCCTGTCAG 59.722 57.143 0.00 0.00 0.00 3.51
318 319 1.352083 CTCCAAGTTCCTCCCTGTCA 58.648 55.000 0.00 0.00 0.00 3.58
319 320 1.353091 ACTCCAAGTTCCTCCCTGTC 58.647 55.000 0.00 0.00 0.00 3.51
320 321 2.638363 GTTACTCCAAGTTCCTCCCTGT 59.362 50.000 0.00 0.00 0.00 4.00
321 322 2.907042 AGTTACTCCAAGTTCCTCCCTG 59.093 50.000 0.00 0.00 0.00 4.45
322 323 2.907042 CAGTTACTCCAAGTTCCTCCCT 59.093 50.000 0.00 0.00 0.00 4.20
337 338 6.019881 GCACCAAAAAGTTCAATCACAGTTAC 60.020 38.462 0.00 0.00 0.00 2.50
339 340 4.869861 GCACCAAAAAGTTCAATCACAGTT 59.130 37.500 0.00 0.00 0.00 3.16
437 439 2.416547 AGCAAACCGACGATGATCAAAG 59.583 45.455 0.00 0.00 0.00 2.77
475 483 2.018515 CCGACAGAGTAGAGGGAGAAC 58.981 57.143 0.00 0.00 0.00 3.01
541 549 7.187824 ACACATATGATAGTGAACCAGTCTT 57.812 36.000 10.38 0.00 39.03 3.01
676 715 3.559597 CCGTCCTTGTAAACCCACCAATA 60.560 47.826 0.00 0.00 0.00 1.90
731 770 2.938451 CTGAGCTTGCGAACAATATGGA 59.062 45.455 0.00 0.00 34.61 3.41
732 771 2.679837 ACTGAGCTTGCGAACAATATGG 59.320 45.455 0.00 0.00 34.61 2.74
733 772 5.469373 TTACTGAGCTTGCGAACAATATG 57.531 39.130 0.00 0.00 34.61 1.78
734 773 6.683974 ATTTACTGAGCTTGCGAACAATAT 57.316 33.333 0.00 0.00 34.61 1.28
735 774 7.201609 CCTTATTTACTGAGCTTGCGAACAATA 60.202 37.037 0.00 0.00 34.61 1.90
790 829 2.418976 CAGATGTGCTTGTCCATGTCAG 59.581 50.000 0.00 0.00 0.00 3.51
829 878 2.040412 CAGCCCCCTAGGTTTCCATATC 59.960 54.545 8.29 0.00 38.26 1.63
862 918 1.281960 CGACCGAGTTCGTGTCTGT 59.718 57.895 15.78 2.19 37.39 3.41
905 961 5.233263 GGATTCTGAATTAGACTCGAGTTGC 59.767 44.000 21.08 7.93 36.30 4.17
985 1043 1.808390 GGTTGGAATCGACGGACGG 60.808 63.158 0.00 0.00 42.82 4.79
1691 1755 1.905894 TGTTTCTCCACCGGATGATCA 59.094 47.619 9.46 0.00 0.00 2.92
1803 1867 0.603975 AGCTTCTCCTTGTTCCGCAC 60.604 55.000 0.00 0.00 0.00 5.34
1821 1885 3.145551 GCCCAATGCCAGCCTCAG 61.146 66.667 0.00 0.00 0.00 3.35
1993 2057 1.662438 CTCTCTGACCTCCGGCAGAC 61.662 65.000 5.50 0.00 34.23 3.51
2089 2153 4.330074 GCGAAAACATCTTTCTAGCAGCTA 59.670 41.667 1.13 1.13 0.00 3.32
2090 2154 3.126000 GCGAAAACATCTTTCTAGCAGCT 59.874 43.478 0.00 0.00 0.00 4.24
2091 2155 3.126000 AGCGAAAACATCTTTCTAGCAGC 59.874 43.478 0.00 0.00 0.00 5.25
2124 2188 2.568623 ACAAGGACATCCACCTCAAC 57.431 50.000 0.00 0.00 36.67 3.18
2157 2226 5.066893 TGGCACTCTAAGTATACGTCGAATT 59.933 40.000 0.00 0.00 0.00 2.17
2159 2228 3.940852 TGGCACTCTAAGTATACGTCGAA 59.059 43.478 0.00 0.00 0.00 3.71
2161 2230 3.311871 AGTGGCACTCTAAGTATACGTCG 59.688 47.826 15.88 0.00 0.00 5.12
2195 2264 1.502190 GCCAAACGGCTGCTTAGAC 59.498 57.895 0.00 0.00 46.85 2.59
2292 2370 5.124776 AGCGGGATGAAAATTTGTTTCGATA 59.875 36.000 0.00 0.00 0.00 2.92
2293 2371 4.082245 AGCGGGATGAAAATTTGTTTCGAT 60.082 37.500 0.00 0.00 0.00 3.59
2304 2382 5.843673 TTGCATATAAAGCGGGATGAAAA 57.156 34.783 0.00 0.00 33.85 2.29
2322 2400 1.315981 TTTGGTCGTGTGGCTTTGCA 61.316 50.000 0.00 0.00 0.00 4.08
2323 2401 0.869880 GTTTGGTCGTGTGGCTTTGC 60.870 55.000 0.00 0.00 0.00 3.68
2336 2414 4.345859 TGAACACCTCTTATCGTTTGGT 57.654 40.909 0.00 0.00 0.00 3.67
2439 2526 6.804677 AGCATATTTGATGCCACGAAATTAA 58.195 32.000 5.93 0.00 45.59 1.40
2478 2565 5.633830 ATTTGTCATGAAATCTCGCAAGT 57.366 34.783 0.00 0.00 39.48 3.16
2513 2606 9.798994 ATAGAATGCTTTTTGTCATGAAATCTC 57.201 29.630 0.00 0.00 0.00 2.75
2531 2624 7.776933 TTCTTGTGTAGACATCATAGAATGC 57.223 36.000 0.00 0.00 30.90 3.56
2622 4037 1.501169 AGGTGCTTGCAAATTTTCGC 58.499 45.000 0.00 0.00 0.00 4.70
2682 4097 7.543172 CACCCTCATGAACAACAAATTCATAAG 59.457 37.037 0.00 0.00 43.39 1.73
2683 4098 7.015098 ACACCCTCATGAACAACAAATTCATAA 59.985 33.333 0.00 0.00 43.39 1.90
2713 4129 0.766674 TGTGGTAGCTCCTGGGTGTT 60.767 55.000 0.00 0.00 37.07 3.32
2732 4148 8.465201 GCATGAGGATTCTTTTAAGAGAAATGT 58.535 33.333 12.03 0.00 38.98 2.71
2757 4173 7.756558 ACTATAGTTTTCTTTGATCAGCTTGC 58.243 34.615 0.00 0.00 0.00 4.01
2878 4294 0.618458 GAGTGGCCTTGGTGGTATCA 59.382 55.000 3.32 0.00 38.35 2.15
2881 4297 1.758592 GTGAGTGGCCTTGGTGGTA 59.241 57.895 3.32 0.00 38.35 3.25
2901 4317 4.040339 TCGAGGTGGTGCATATTCATATGT 59.960 41.667 1.90 0.00 41.63 2.29
2910 4326 2.935238 GCTTTCTTCGAGGTGGTGCATA 60.935 50.000 0.00 0.00 0.00 3.14
3016 4432 2.583441 CCTCCAGTCTTGCCGACCA 61.583 63.158 0.14 0.00 43.91 4.02
3017 4433 1.617947 ATCCTCCAGTCTTGCCGACC 61.618 60.000 0.14 0.00 43.91 4.79
3030 4446 1.131638 TACAGGTGATGGCATCCTCC 58.868 55.000 23.92 23.24 0.00 4.30
3045 4461 2.675317 CGTTTGCCCCTCTCTCTTACAG 60.675 54.545 0.00 0.00 0.00 2.74
3132 4552 4.241590 TGCAAGTTTTATCTGGTTGCAG 57.758 40.909 4.02 0.00 46.39 4.41
3185 4605 3.028366 GCTTTCTTCGAGGTGGCGC 62.028 63.158 0.00 0.00 0.00 6.53
3203 4623 3.427503 GGATGTTGCGGTAAAGTCCATTG 60.428 47.826 6.06 0.00 0.00 2.82
3213 4633 2.191786 CTGGTGGGGATGTTGCGGTA 62.192 60.000 0.00 0.00 0.00 4.02
3234 4654 3.133542 CAGAGAGCCATATCTGGACACAA 59.866 47.826 0.32 0.00 46.37 3.33
3251 4671 0.608308 TCGAAACGAGAGGGCAGAGA 60.608 55.000 0.00 0.00 0.00 3.10
3273 4693 0.670546 CAACAAGGTCGACGCTCCAT 60.671 55.000 9.92 0.00 0.00 3.41
3279 4699 3.725819 TTGCCAACAAGGTCGACG 58.274 55.556 9.92 0.00 40.61 5.12
3307 4727 3.270027 CTCCCTTTTACATGTGATCGCA 58.730 45.455 12.12 12.12 0.00 5.10
3310 4730 3.053619 ACCCCTCCCTTTTACATGTGATC 60.054 47.826 9.11 0.00 0.00 2.92
3325 4745 0.107993 GTGGCTACGTTTACCCCTCC 60.108 60.000 0.00 0.00 0.00 4.30
3398 4818 3.192001 AGTTTTATCTGGCTACGACGACA 59.808 43.478 0.00 0.00 0.00 4.35
3399 4819 3.767278 AGTTTTATCTGGCTACGACGAC 58.233 45.455 0.00 0.00 0.00 4.34
3402 4822 3.682858 TGCAAGTTTTATCTGGCTACGAC 59.317 43.478 0.00 0.00 35.57 4.34
3406 4826 5.767665 TCAAAGTGCAAGTTTTATCTGGCTA 59.232 36.000 0.00 0.00 37.37 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.