Multiple sequence alignment - TraesCS3B01G271300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G271300 chr3B 100.000 3233 0 0 1 3233 436738823 436742055 0 5971
1 TraesCS3B01G271300 chr3A 92.463 2375 108 28 879 3225 456775502 456777833 0 3328
2 TraesCS3B01G271300 chr3D 92.145 1897 102 18 1363 3225 338489889 338491772 0 2634
3 TraesCS3B01G271300 chr3D 94.553 459 16 4 879 1335 338489442 338489893 0 701
4 TraesCS3B01G271300 chr6B 95.351 882 36 1 1 877 12387429 12388310 0 1397
5 TraesCS3B01G271300 chr7B 94.779 881 41 1 1 876 19254186 19253306 0 1367
6 TraesCS3B01G271300 chr7B 92.063 882 65 1 1 877 657213498 657212617 0 1236
7 TraesCS3B01G271300 chr6A 88.826 886 92 5 1 880 536794473 536795357 0 1081
8 TraesCS3B01G271300 chr6A 88.826 886 92 5 1 880 536798073 536798957 0 1081
9 TraesCS3B01G271300 chr6A 88.826 886 92 5 1 880 536801658 536802542 0 1081
10 TraesCS3B01G271300 chr6D 88.335 883 98 1 1 878 450270306 450271188 0 1055
11 TraesCS3B01G271300 chr7A 87.203 883 103 8 1 876 436880290 436881169 0 996
12 TraesCS3B01G271300 chrUn 86.952 889 109 5 1 882 109004661 109003773 0 992


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G271300 chr3B 436738823 436742055 3232 False 5971.0 5971 100.000 1 3233 1 chr3B.!!$F1 3232
1 TraesCS3B01G271300 chr3A 456775502 456777833 2331 False 3328.0 3328 92.463 879 3225 1 chr3A.!!$F1 2346
2 TraesCS3B01G271300 chr3D 338489442 338491772 2330 False 1667.5 2634 93.349 879 3225 2 chr3D.!!$F1 2346
3 TraesCS3B01G271300 chr6B 12387429 12388310 881 False 1397.0 1397 95.351 1 877 1 chr6B.!!$F1 876
4 TraesCS3B01G271300 chr7B 19253306 19254186 880 True 1367.0 1367 94.779 1 876 1 chr7B.!!$R1 875
5 TraesCS3B01G271300 chr7B 657212617 657213498 881 True 1236.0 1236 92.063 1 877 1 chr7B.!!$R2 876
6 TraesCS3B01G271300 chr6A 536794473 536802542 8069 False 1081.0 1081 88.826 1 880 3 chr6A.!!$F1 879
7 TraesCS3B01G271300 chr6D 450270306 450271188 882 False 1055.0 1055 88.335 1 878 1 chr6D.!!$F1 877
8 TraesCS3B01G271300 chr7A 436880290 436881169 879 False 996.0 996 87.203 1 876 1 chr7A.!!$F1 875
9 TraesCS3B01G271300 chrUn 109003773 109004661 888 True 992.0 992 86.952 1 882 1 chrUn.!!$R1 881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 7656 0.540365 CCCAAACAGCACTGATGGGT 60.540 55.0 25.29 0.0 46.34 4.51 F
1033 8229 0.253327 GGCGAACCCTTCTTCCATCT 59.747 55.0 0.00 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1361 8559 0.921347 GTAACAGCAGCGATGGTACG 59.079 55.0 4.5 0.0 32.58 3.67 R
2663 9908 2.290514 TGAGGTTGCAGAGGATTGGAAG 60.291 50.0 0.0 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 7237 4.698780 TCAAGCACATGAAGAAGATCTTGG 59.301 41.667 14.00 0.00 36.73 3.61
136 7323 2.125912 AAGCTACCGCGACTGCAG 60.126 61.111 13.48 13.48 42.97 4.41
245 7432 1.141053 GGAGTTCCCGCAATAGATGGT 59.859 52.381 0.00 0.00 0.00 3.55
259 7446 1.976404 AGATGGTCGCATGATGGAGAT 59.024 47.619 0.00 0.00 0.00 2.75
325 7512 5.854010 TGGCTCTACTTGATGTACCTAAG 57.146 43.478 0.00 0.00 0.00 2.18
402 7589 4.518970 AGTAAAAATCAACACCGATGCAGT 59.481 37.500 0.00 0.00 0.00 4.40
419 7606 1.132640 GTTGTGCGATTCGTGGAGC 59.867 57.895 8.03 0.00 0.00 4.70
433 7620 2.563427 GAGCAGAAAAGTGGCGCC 59.437 61.111 22.73 22.73 0.00 6.53
469 7656 0.540365 CCCAAACAGCACTGATGGGT 60.540 55.000 25.29 0.00 46.34 4.51
625 7812 3.511540 TGAATCTCTGGAACACTCGACAT 59.488 43.478 0.00 0.00 0.00 3.06
681 7868 5.610398 TGAAATTGATGAGCTAGCGGATAA 58.390 37.500 9.55 3.13 0.00 1.75
690 7877 4.141711 TGAGCTAGCGGATAATTTCCACTT 60.142 41.667 9.55 0.00 45.78 3.16
806 7993 4.895889 TCTCTGAGACTTCAAGTTTCCTGA 59.104 41.667 2.58 3.79 29.05 3.86
1005 8201 1.675310 CAGCCCTTGCCGAATGACA 60.675 57.895 0.00 0.00 38.69 3.58
1006 8202 1.074775 AGCCCTTGCCGAATGACAA 59.925 52.632 0.00 0.00 38.69 3.18
1007 8203 0.962356 AGCCCTTGCCGAATGACAAG 60.962 55.000 0.00 0.00 42.35 3.16
1008 8204 0.960364 GCCCTTGCCGAATGACAAGA 60.960 55.000 4.39 0.00 44.89 3.02
1009 8205 0.804989 CCCTTGCCGAATGACAAGAC 59.195 55.000 4.39 0.00 44.89 3.01
1010 8206 0.443869 CCTTGCCGAATGACAAGACG 59.556 55.000 4.39 0.00 44.89 4.18
1011 8207 1.428448 CTTGCCGAATGACAAGACGA 58.572 50.000 0.00 0.00 44.89 4.20
1015 8211 1.128692 GCCGAATGACAAGACGAAAGG 59.871 52.381 0.00 0.00 0.00 3.11
1031 8227 2.387952 AGGCGAACCCTTCTTCCAT 58.612 52.632 0.00 0.00 43.06 3.41
1033 8229 0.253327 GGCGAACCCTTCTTCCATCT 59.747 55.000 0.00 0.00 0.00 2.90
1038 8234 3.430098 CGAACCCTTCTTCCATCTCTCTG 60.430 52.174 0.00 0.00 0.00 3.35
1049 8247 1.675483 CATCTCTCTGTCTCCACTCGG 59.325 57.143 0.00 0.00 0.00 4.63
1327 8525 1.057847 GTTTCGTCGCTGACTCGATTG 59.942 52.381 7.03 0.00 40.84 2.67
1361 8559 2.998670 GCTTTGTAAGTCCGTAACCCTC 59.001 50.000 0.00 0.00 0.00 4.30
1482 8680 7.778853 AGGATTGAAATGAAGAGAGTGCATATT 59.221 33.333 0.00 0.00 0.00 1.28
1494 8692 6.609212 AGAGAGTGCATATTTCTCTGACCTAA 59.391 38.462 17.00 0.00 44.39 2.69
1497 8695 8.928448 AGAGTGCATATTTCTCTGACCTAAATA 58.072 33.333 3.17 0.00 37.20 1.40
1498 8696 9.547753 GAGTGCATATTTCTCTGACCTAAATAA 57.452 33.333 0.00 0.00 31.03 1.40
1499 8697 9.331282 AGTGCATATTTCTCTGACCTAAATAAC 57.669 33.333 0.00 0.00 31.03 1.89
1522 8728 3.362596 CGTGTTTCGTACCATGTGACTTG 60.363 47.826 0.00 0.00 34.52 3.16
1531 8737 4.647564 ACCATGTGACTTGAGAAATCCT 57.352 40.909 0.00 0.00 0.00 3.24
1673 8894 5.930135 AGTAATCAGTACATTCCCCATGTC 58.070 41.667 0.00 0.00 43.17 3.06
1695 8916 5.009610 GTCTAGCTAGGATCCTTGTTCTGAG 59.990 48.000 22.03 10.43 0.00 3.35
1907 9128 9.098355 TCTCATTGATAACTAACAGCATTACAC 57.902 33.333 0.00 0.00 0.00 2.90
1956 9177 2.258726 GGAAACCCGTGTGCTCACC 61.259 63.158 13.00 0.00 41.09 4.02
1968 9189 1.003839 GCTCACCACCATCCGTGAA 60.004 57.895 0.00 0.00 46.20 3.18
2200 9421 3.653539 TCGCCATTTTAGCTATCGCTA 57.346 42.857 0.00 0.00 46.79 4.26
2240 9461 3.442625 CAGCTCTTGCCATGAATCAAGAA 59.557 43.478 18.68 8.84 45.36 2.52
2242 9463 3.734293 GCTCTTGCCATGAATCAAGAAGC 60.734 47.826 18.68 18.46 45.36 3.86
2250 9471 6.015180 TGCCATGAATCAAGAAGCTTTTAGTT 60.015 34.615 0.00 0.00 0.00 2.24
2262 9483 6.429385 AGAAGCTTTTAGTTGTCATCTTCAGG 59.571 38.462 0.00 0.00 33.23 3.86
2382 9603 5.163683 CCATTAAGCAGCAGATATGGCATAC 60.164 44.000 9.83 4.30 0.00 2.39
2438 9665 8.153221 TCATATTAAACTCAACAAGGAGGGTA 57.847 34.615 0.00 0.00 39.27 3.69
2491 9736 4.341806 TGACAACCTGAAGAAATGTTGCAT 59.658 37.500 0.00 0.00 41.28 3.96
2493 9738 6.017400 ACAACCTGAAGAAATGTTGCATAG 57.983 37.500 0.00 0.00 41.28 2.23
2503 9748 7.317842 AGAAATGTTGCATAGAGAACATGAG 57.682 36.000 0.00 0.00 41.00 2.90
2506 9751 5.363562 TGTTGCATAGAGAACATGAGGAT 57.636 39.130 0.00 0.00 0.00 3.24
2524 9769 4.666512 AGGATTACAGGTGCATTTCAACT 58.333 39.130 0.00 0.00 45.42 3.16
2545 9790 7.653713 TCAACTACAGTTCTGAAACTTCTGATC 59.346 37.037 11.35 0.00 43.28 2.92
2602 9847 2.957402 ATCTGACTGCTTCCCACAAA 57.043 45.000 0.00 0.00 0.00 2.83
2649 9894 9.784531 AACAAGATCTAAAATCACTTCTCAAGA 57.215 29.630 0.00 0.00 0.00 3.02
2663 9908 4.193826 TCTCAAGATACAACACCAGAGC 57.806 45.455 0.00 0.00 0.00 4.09
2680 9925 1.742268 GAGCTTCCAATCCTCTGCAAC 59.258 52.381 0.00 0.00 0.00 4.17
2690 9935 1.421268 TCCTCTGCAACCTCAACACAT 59.579 47.619 0.00 0.00 0.00 3.21
2728 9973 3.129852 TCTTGTTCAAACGCACACTTG 57.870 42.857 0.00 0.00 0.00 3.16
2742 9987 3.784338 CACACTTGTCAAACCAAGCAAT 58.216 40.909 1.04 0.00 44.55 3.56
2747 9992 5.809562 CACTTGTCAAACCAAGCAATTTACA 59.190 36.000 1.04 0.00 44.55 2.41
2784 10029 1.200519 TTACCATCTCCCCTTGACCG 58.799 55.000 0.00 0.00 0.00 4.79
2789 10034 0.252742 ATCTCCCCTTGACCGACCTT 60.253 55.000 0.00 0.00 0.00 3.50
2794 10039 1.280998 CCCCTTGACCGACCTTACAAT 59.719 52.381 0.00 0.00 0.00 2.71
2813 10058 9.112725 CTTACAATATCCATCAATCTTCACACA 57.887 33.333 0.00 0.00 0.00 3.72
2815 10060 7.114754 ACAATATCCATCAATCTTCACACAGT 58.885 34.615 0.00 0.00 0.00 3.55
2836 10081 7.593875 CAGTCTTCTGTCTTCTCTTATTTGG 57.406 40.000 0.00 0.00 36.97 3.28
2840 10085 7.759433 GTCTTCTGTCTTCTCTTATTTGGAGAG 59.241 40.741 0.00 0.00 40.35 3.20
2917 10162 4.608951 GATTATCGTTCGGTCTTAGCTGT 58.391 43.478 0.00 0.00 0.00 4.40
2947 10192 3.181475 GGAGACGTCCTTGCTTGATCATA 60.181 47.826 13.01 0.00 40.17 2.15
3001 10246 2.955660 AGCTAGGAAGGAGATCTCAACG 59.044 50.000 23.85 6.13 0.00 4.10
3019 10264 2.582978 GTAAGGAGGCCGGTCCAC 59.417 66.667 13.29 8.57 39.34 4.02
3046 10291 1.293498 GCTCTTGGCGGTTCTCTCA 59.707 57.895 0.00 0.00 0.00 3.27
3049 10294 1.205655 CTCTTGGCGGTTCTCTCATGA 59.794 52.381 0.00 0.00 0.00 3.07
3162 10407 3.772025 CCCTTGACACCTCTGTAGAGATT 59.228 47.826 10.40 0.00 44.74 2.40
3165 10410 5.128499 CCTTGACACCTCTGTAGAGATTGAT 59.872 44.000 10.40 0.00 44.74 2.57
3168 10413 6.663734 TGACACCTCTGTAGAGATTGATAGA 58.336 40.000 10.40 0.00 44.74 1.98
3169 10414 6.770303 TGACACCTCTGTAGAGATTGATAGAG 59.230 42.308 10.40 0.00 44.74 2.43
3170 10415 6.905736 ACACCTCTGTAGAGATTGATAGAGA 58.094 40.000 10.40 0.00 44.74 3.10
3171 10416 7.350382 ACACCTCTGTAGAGATTGATAGAGAA 58.650 38.462 10.40 0.00 44.74 2.87
3219 10464 9.131791 ACTTTGTAGTATGAAACATGAAAAGGT 57.868 29.630 0.00 0.00 31.21 3.50
3225 10470 7.271511 AGTATGAAACATGAAAAGGTTGCAAA 58.728 30.769 0.00 0.00 36.21 3.68
3226 10471 6.998968 ATGAAACATGAAAAGGTTGCAAAA 57.001 29.167 0.00 0.00 36.21 2.44
3227 10472 6.998968 TGAAACATGAAAAGGTTGCAAAAT 57.001 29.167 0.00 0.00 29.72 1.82
3228 10473 7.388460 TGAAACATGAAAAGGTTGCAAAATT 57.612 28.000 0.00 0.00 29.72 1.82
3229 10474 7.824672 TGAAACATGAAAAGGTTGCAAAATTT 58.175 26.923 0.00 2.18 29.72 1.82
3230 10475 7.754027 TGAAACATGAAAAGGTTGCAAAATTTG 59.246 29.630 0.00 0.57 29.72 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 7237 5.515982 TGCGAACAATGAATTAATGCATGTC 59.484 36.000 9.81 7.19 0.00 3.06
139 7326 0.394192 TATCGCCAGCCCATGAAGAG 59.606 55.000 0.00 0.00 0.00 2.85
245 7432 5.022282 TCAAACTTATCTCCATCATGCGA 57.978 39.130 0.00 0.00 0.00 5.10
259 7446 3.934068 GGACTTCACCGGATCAAACTTA 58.066 45.455 9.46 0.00 0.00 2.24
325 7512 2.261671 AGCATTGCAGCTTGCTGC 59.738 55.556 32.88 32.88 46.96 5.25
402 7589 1.291184 CTGCTCCACGAATCGCACAA 61.291 55.000 1.15 0.00 0.00 3.33
419 7606 2.978010 ACCGGCGCCACTTTTCTG 60.978 61.111 28.98 7.02 0.00 3.02
447 7634 1.546323 CCATCAGTGCTGTTTGGGAGT 60.546 52.381 12.69 0.00 34.02 3.85
794 7981 5.248477 AGCCACTACTTATCAGGAAACTTGA 59.752 40.000 0.00 0.00 40.21 3.02
909 8102 0.670546 ACGTTCGAGCCTTCATGGTG 60.671 55.000 0.00 0.00 38.35 4.17
1005 8201 0.108019 AAGGGTTCGCCTTTCGTCTT 59.892 50.000 0.00 0.00 39.67 3.01
1006 8202 0.320508 GAAGGGTTCGCCTTTCGTCT 60.321 55.000 0.00 0.00 42.30 4.18
1007 8203 2.160063 GAAGGGTTCGCCTTTCGTC 58.840 57.895 0.00 0.00 42.30 4.20
1008 8204 4.373771 GAAGGGTTCGCCTTTCGT 57.626 55.556 0.00 0.00 42.30 3.85
1011 8207 0.476771 TGGAAGAAGGGTTCGCCTTT 59.523 50.000 0.00 0.00 39.47 3.11
1015 8211 1.208293 AGAGATGGAAGAAGGGTTCGC 59.792 52.381 0.00 0.00 34.02 4.70
1031 8227 0.678366 GCCGAGTGGAGACAGAGAGA 60.678 60.000 0.00 0.00 44.46 3.10
1033 8229 1.679305 GGCCGAGTGGAGACAGAGA 60.679 63.158 0.00 0.00 44.46 3.10
1038 8234 1.374758 CAGTTGGCCGAGTGGAGAC 60.375 63.158 19.08 0.00 37.49 3.36
1049 8247 1.228245 TGGCTCTTGTCCAGTTGGC 60.228 57.895 0.00 0.00 34.44 4.52
1327 8525 2.914097 AAAGCCACCAGGTGCAGC 60.914 61.111 14.98 13.21 37.19 5.25
1361 8559 0.921347 GTAACAGCAGCGATGGTACG 59.079 55.000 4.50 0.00 32.58 3.67
1444 8642 1.965414 TCAATCCTACCCAGCTTCCA 58.035 50.000 0.00 0.00 0.00 3.53
1482 8680 5.733620 ACACGGTTATTTAGGTCAGAGAA 57.266 39.130 0.00 0.00 0.00 2.87
1522 8728 7.856145 ATCATCACAAACTACAGGATTTCTC 57.144 36.000 0.00 0.00 0.00 2.87
1673 8894 4.261994 GCTCAGAACAAGGATCCTAGCTAG 60.262 50.000 16.55 14.20 0.00 3.42
1695 8916 0.953960 CAACTGGTACCGTGGGAAGC 60.954 60.000 7.57 0.00 0.00 3.86
1907 9128 2.707791 TCATTCTCTGAGCATAAGGGGG 59.292 50.000 0.00 0.00 0.00 5.40
2240 9461 4.457257 GCCTGAAGATGACAACTAAAAGCT 59.543 41.667 0.00 0.00 0.00 3.74
2242 9463 5.006386 AGGCCTGAAGATGACAACTAAAAG 58.994 41.667 3.11 0.00 0.00 2.27
2250 9471 3.507162 TGAAAAGGCCTGAAGATGACA 57.493 42.857 5.69 0.00 0.00 3.58
2326 9547 7.517320 ACCTACATGCTCCATATACAAATTCA 58.483 34.615 0.00 0.00 0.00 2.57
2382 9603 6.612247 TGTGGCTAATGGATAAAACATACG 57.388 37.500 0.00 0.00 0.00 3.06
2444 9671 9.013229 TCAACATTTCACAGTGCTAATTCTTAT 57.987 29.630 0.00 0.00 0.00 1.73
2458 9685 4.946772 TCTTCAGGTTGTCAACATTTCACA 59.053 37.500 17.29 0.00 0.00 3.58
2466 9710 4.504097 GCAACATTTCTTCAGGTTGTCAAC 59.496 41.667 7.20 7.20 41.89 3.18
2491 9736 5.163405 GCACCTGTAATCCTCATGTTCTCTA 60.163 44.000 0.00 0.00 0.00 2.43
2493 9738 3.873952 GCACCTGTAATCCTCATGTTCTC 59.126 47.826 0.00 0.00 0.00 2.87
2503 9748 5.414454 TGTAGTTGAAATGCACCTGTAATCC 59.586 40.000 0.00 0.00 0.00 3.01
2506 9751 5.373222 ACTGTAGTTGAAATGCACCTGTAA 58.627 37.500 0.00 0.00 0.00 2.41
2524 9769 8.908786 AAATGATCAGAAGTTTCAGAACTGTA 57.091 30.769 0.09 0.00 45.18 2.74
2545 9790 6.354938 TCTGATCATCAGGGAAGAAGAAATG 58.645 40.000 14.96 0.00 44.39 2.32
2582 9827 3.327757 AGTTTGTGGGAAGCAGTCAGATA 59.672 43.478 0.00 0.00 0.00 1.98
2602 9847 5.184864 TGTTTCAAGACACCATTTGAACAGT 59.815 36.000 0.00 0.00 41.51 3.55
2649 9894 3.788227 TTGGAAGCTCTGGTGTTGTAT 57.212 42.857 0.00 0.00 0.00 2.29
2663 9908 2.290514 TGAGGTTGCAGAGGATTGGAAG 60.291 50.000 0.00 0.00 0.00 3.46
2680 9925 6.500684 ACAGCTTTTATACATGTGTTGAGG 57.499 37.500 9.11 0.00 0.00 3.86
2690 9935 9.278978 TGAACAAGATTGTACAGCTTTTATACA 57.721 29.630 9.55 0.00 41.31 2.29
2728 9973 5.691754 CCTCTTGTAAATTGCTTGGTTTGAC 59.308 40.000 0.00 0.00 0.00 3.18
2747 9992 8.718656 AGATGGTAAATGCTACTAAATCCTCTT 58.281 33.333 0.00 0.00 0.00 2.85
2784 10029 8.778358 GTGAAGATTGATGGATATTGTAAGGTC 58.222 37.037 0.00 0.00 0.00 3.85
2789 10034 8.267183 ACTGTGTGAAGATTGATGGATATTGTA 58.733 33.333 0.00 0.00 0.00 2.41
2794 10039 6.550938 AGACTGTGTGAAGATTGATGGATA 57.449 37.500 0.00 0.00 0.00 2.59
2813 10058 7.453126 TCTCCAAATAAGAGAAGACAGAAGACT 59.547 37.037 0.00 0.00 37.44 3.24
2815 10060 7.453126 ACTCTCCAAATAAGAGAAGACAGAAGA 59.547 37.037 7.12 0.00 42.39 2.87
2840 10085 3.146066 TGGTTATGGTGCAAGAGTGAAC 58.854 45.455 0.00 0.00 31.60 3.18
2894 10139 3.664486 CAGCTAAGACCGAACGATAATCG 59.336 47.826 0.00 0.00 46.93 3.34
2917 10162 3.058160 GGACGTCTCCCGGTCGAA 61.058 66.667 16.46 0.00 42.24 3.71
2947 10192 6.194235 CCTCTTGATAGATAGGTGGAGCTAT 58.806 44.000 0.00 0.00 30.76 2.97
3001 10246 2.686106 TGGACCGGCCTCCTTACC 60.686 66.667 12.06 2.54 37.63 2.85
3046 10291 2.369257 CTGGCCTCCGCACGTATCAT 62.369 60.000 3.32 0.00 36.38 2.45
3049 10294 2.758327 TCTGGCCTCCGCACGTAT 60.758 61.111 3.32 0.00 36.38 3.06
3096 10341 2.819595 GGCTTCTCGGCATCGCAA 60.820 61.111 0.00 0.00 38.25 4.85
3162 10407 5.280499 TGAACCTGAATCCCTTCTCTATCA 58.720 41.667 0.00 0.00 32.29 2.15
3165 10410 4.033709 CCTGAACCTGAATCCCTTCTCTA 58.966 47.826 0.00 0.00 32.29 2.43
3168 10413 2.637165 ACCTGAACCTGAATCCCTTCT 58.363 47.619 0.00 0.00 32.29 2.85
3169 10414 4.164221 TCATACCTGAACCTGAATCCCTTC 59.836 45.833 0.00 0.00 0.00 3.46
3170 10415 4.111577 TCATACCTGAACCTGAATCCCTT 58.888 43.478 0.00 0.00 0.00 3.95
3171 10416 3.736094 TCATACCTGAACCTGAATCCCT 58.264 45.455 0.00 0.00 0.00 4.20
3201 10446 7.475771 TTTGCAACCTTTTCATGTTTCATAC 57.524 32.000 0.00 0.00 0.00 2.39
3202 10447 8.674263 ATTTTGCAACCTTTTCATGTTTCATA 57.326 26.923 0.00 0.00 0.00 2.15
3203 10448 6.998968 TTTTGCAACCTTTTCATGTTTCAT 57.001 29.167 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.