Multiple sequence alignment - TraesCS3B01G271300
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G271300
chr3B
100.000
3233
0
0
1
3233
436738823
436742055
0
5971
1
TraesCS3B01G271300
chr3A
92.463
2375
108
28
879
3225
456775502
456777833
0
3328
2
TraesCS3B01G271300
chr3D
92.145
1897
102
18
1363
3225
338489889
338491772
0
2634
3
TraesCS3B01G271300
chr3D
94.553
459
16
4
879
1335
338489442
338489893
0
701
4
TraesCS3B01G271300
chr6B
95.351
882
36
1
1
877
12387429
12388310
0
1397
5
TraesCS3B01G271300
chr7B
94.779
881
41
1
1
876
19254186
19253306
0
1367
6
TraesCS3B01G271300
chr7B
92.063
882
65
1
1
877
657213498
657212617
0
1236
7
TraesCS3B01G271300
chr6A
88.826
886
92
5
1
880
536794473
536795357
0
1081
8
TraesCS3B01G271300
chr6A
88.826
886
92
5
1
880
536798073
536798957
0
1081
9
TraesCS3B01G271300
chr6A
88.826
886
92
5
1
880
536801658
536802542
0
1081
10
TraesCS3B01G271300
chr6D
88.335
883
98
1
1
878
450270306
450271188
0
1055
11
TraesCS3B01G271300
chr7A
87.203
883
103
8
1
876
436880290
436881169
0
996
12
TraesCS3B01G271300
chrUn
86.952
889
109
5
1
882
109004661
109003773
0
992
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G271300
chr3B
436738823
436742055
3232
False
5971.0
5971
100.000
1
3233
1
chr3B.!!$F1
3232
1
TraesCS3B01G271300
chr3A
456775502
456777833
2331
False
3328.0
3328
92.463
879
3225
1
chr3A.!!$F1
2346
2
TraesCS3B01G271300
chr3D
338489442
338491772
2330
False
1667.5
2634
93.349
879
3225
2
chr3D.!!$F1
2346
3
TraesCS3B01G271300
chr6B
12387429
12388310
881
False
1397.0
1397
95.351
1
877
1
chr6B.!!$F1
876
4
TraesCS3B01G271300
chr7B
19253306
19254186
880
True
1367.0
1367
94.779
1
876
1
chr7B.!!$R1
875
5
TraesCS3B01G271300
chr7B
657212617
657213498
881
True
1236.0
1236
92.063
1
877
1
chr7B.!!$R2
876
6
TraesCS3B01G271300
chr6A
536794473
536802542
8069
False
1081.0
1081
88.826
1
880
3
chr6A.!!$F1
879
7
TraesCS3B01G271300
chr6D
450270306
450271188
882
False
1055.0
1055
88.335
1
878
1
chr6D.!!$F1
877
8
TraesCS3B01G271300
chr7A
436880290
436881169
879
False
996.0
996
87.203
1
876
1
chr7A.!!$F1
875
9
TraesCS3B01G271300
chrUn
109003773
109004661
888
True
992.0
992
86.952
1
882
1
chrUn.!!$R1
881
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
469
7656
0.540365
CCCAAACAGCACTGATGGGT
60.540
55.0
25.29
0.0
46.34
4.51
F
1033
8229
0.253327
GGCGAACCCTTCTTCCATCT
59.747
55.0
0.00
0.0
0.00
2.90
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1361
8559
0.921347
GTAACAGCAGCGATGGTACG
59.079
55.0
4.5
0.0
32.58
3.67
R
2663
9908
2.290514
TGAGGTTGCAGAGGATTGGAAG
60.291
50.0
0.0
0.0
0.00
3.46
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
51
7237
4.698780
TCAAGCACATGAAGAAGATCTTGG
59.301
41.667
14.00
0.00
36.73
3.61
136
7323
2.125912
AAGCTACCGCGACTGCAG
60.126
61.111
13.48
13.48
42.97
4.41
245
7432
1.141053
GGAGTTCCCGCAATAGATGGT
59.859
52.381
0.00
0.00
0.00
3.55
259
7446
1.976404
AGATGGTCGCATGATGGAGAT
59.024
47.619
0.00
0.00
0.00
2.75
325
7512
5.854010
TGGCTCTACTTGATGTACCTAAG
57.146
43.478
0.00
0.00
0.00
2.18
402
7589
4.518970
AGTAAAAATCAACACCGATGCAGT
59.481
37.500
0.00
0.00
0.00
4.40
419
7606
1.132640
GTTGTGCGATTCGTGGAGC
59.867
57.895
8.03
0.00
0.00
4.70
433
7620
2.563427
GAGCAGAAAAGTGGCGCC
59.437
61.111
22.73
22.73
0.00
6.53
469
7656
0.540365
CCCAAACAGCACTGATGGGT
60.540
55.000
25.29
0.00
46.34
4.51
625
7812
3.511540
TGAATCTCTGGAACACTCGACAT
59.488
43.478
0.00
0.00
0.00
3.06
681
7868
5.610398
TGAAATTGATGAGCTAGCGGATAA
58.390
37.500
9.55
3.13
0.00
1.75
690
7877
4.141711
TGAGCTAGCGGATAATTTCCACTT
60.142
41.667
9.55
0.00
45.78
3.16
806
7993
4.895889
TCTCTGAGACTTCAAGTTTCCTGA
59.104
41.667
2.58
3.79
29.05
3.86
1005
8201
1.675310
CAGCCCTTGCCGAATGACA
60.675
57.895
0.00
0.00
38.69
3.58
1006
8202
1.074775
AGCCCTTGCCGAATGACAA
59.925
52.632
0.00
0.00
38.69
3.18
1007
8203
0.962356
AGCCCTTGCCGAATGACAAG
60.962
55.000
0.00
0.00
42.35
3.16
1008
8204
0.960364
GCCCTTGCCGAATGACAAGA
60.960
55.000
4.39
0.00
44.89
3.02
1009
8205
0.804989
CCCTTGCCGAATGACAAGAC
59.195
55.000
4.39
0.00
44.89
3.01
1010
8206
0.443869
CCTTGCCGAATGACAAGACG
59.556
55.000
4.39
0.00
44.89
4.18
1011
8207
1.428448
CTTGCCGAATGACAAGACGA
58.572
50.000
0.00
0.00
44.89
4.20
1015
8211
1.128692
GCCGAATGACAAGACGAAAGG
59.871
52.381
0.00
0.00
0.00
3.11
1031
8227
2.387952
AGGCGAACCCTTCTTCCAT
58.612
52.632
0.00
0.00
43.06
3.41
1033
8229
0.253327
GGCGAACCCTTCTTCCATCT
59.747
55.000
0.00
0.00
0.00
2.90
1038
8234
3.430098
CGAACCCTTCTTCCATCTCTCTG
60.430
52.174
0.00
0.00
0.00
3.35
1049
8247
1.675483
CATCTCTCTGTCTCCACTCGG
59.325
57.143
0.00
0.00
0.00
4.63
1327
8525
1.057847
GTTTCGTCGCTGACTCGATTG
59.942
52.381
7.03
0.00
40.84
2.67
1361
8559
2.998670
GCTTTGTAAGTCCGTAACCCTC
59.001
50.000
0.00
0.00
0.00
4.30
1482
8680
7.778853
AGGATTGAAATGAAGAGAGTGCATATT
59.221
33.333
0.00
0.00
0.00
1.28
1494
8692
6.609212
AGAGAGTGCATATTTCTCTGACCTAA
59.391
38.462
17.00
0.00
44.39
2.69
1497
8695
8.928448
AGAGTGCATATTTCTCTGACCTAAATA
58.072
33.333
3.17
0.00
37.20
1.40
1498
8696
9.547753
GAGTGCATATTTCTCTGACCTAAATAA
57.452
33.333
0.00
0.00
31.03
1.40
1499
8697
9.331282
AGTGCATATTTCTCTGACCTAAATAAC
57.669
33.333
0.00
0.00
31.03
1.89
1522
8728
3.362596
CGTGTTTCGTACCATGTGACTTG
60.363
47.826
0.00
0.00
34.52
3.16
1531
8737
4.647564
ACCATGTGACTTGAGAAATCCT
57.352
40.909
0.00
0.00
0.00
3.24
1673
8894
5.930135
AGTAATCAGTACATTCCCCATGTC
58.070
41.667
0.00
0.00
43.17
3.06
1695
8916
5.009610
GTCTAGCTAGGATCCTTGTTCTGAG
59.990
48.000
22.03
10.43
0.00
3.35
1907
9128
9.098355
TCTCATTGATAACTAACAGCATTACAC
57.902
33.333
0.00
0.00
0.00
2.90
1956
9177
2.258726
GGAAACCCGTGTGCTCACC
61.259
63.158
13.00
0.00
41.09
4.02
1968
9189
1.003839
GCTCACCACCATCCGTGAA
60.004
57.895
0.00
0.00
46.20
3.18
2200
9421
3.653539
TCGCCATTTTAGCTATCGCTA
57.346
42.857
0.00
0.00
46.79
4.26
2240
9461
3.442625
CAGCTCTTGCCATGAATCAAGAA
59.557
43.478
18.68
8.84
45.36
2.52
2242
9463
3.734293
GCTCTTGCCATGAATCAAGAAGC
60.734
47.826
18.68
18.46
45.36
3.86
2250
9471
6.015180
TGCCATGAATCAAGAAGCTTTTAGTT
60.015
34.615
0.00
0.00
0.00
2.24
2262
9483
6.429385
AGAAGCTTTTAGTTGTCATCTTCAGG
59.571
38.462
0.00
0.00
33.23
3.86
2382
9603
5.163683
CCATTAAGCAGCAGATATGGCATAC
60.164
44.000
9.83
4.30
0.00
2.39
2438
9665
8.153221
TCATATTAAACTCAACAAGGAGGGTA
57.847
34.615
0.00
0.00
39.27
3.69
2491
9736
4.341806
TGACAACCTGAAGAAATGTTGCAT
59.658
37.500
0.00
0.00
41.28
3.96
2493
9738
6.017400
ACAACCTGAAGAAATGTTGCATAG
57.983
37.500
0.00
0.00
41.28
2.23
2503
9748
7.317842
AGAAATGTTGCATAGAGAACATGAG
57.682
36.000
0.00
0.00
41.00
2.90
2506
9751
5.363562
TGTTGCATAGAGAACATGAGGAT
57.636
39.130
0.00
0.00
0.00
3.24
2524
9769
4.666512
AGGATTACAGGTGCATTTCAACT
58.333
39.130
0.00
0.00
45.42
3.16
2545
9790
7.653713
TCAACTACAGTTCTGAAACTTCTGATC
59.346
37.037
11.35
0.00
43.28
2.92
2602
9847
2.957402
ATCTGACTGCTTCCCACAAA
57.043
45.000
0.00
0.00
0.00
2.83
2649
9894
9.784531
AACAAGATCTAAAATCACTTCTCAAGA
57.215
29.630
0.00
0.00
0.00
3.02
2663
9908
4.193826
TCTCAAGATACAACACCAGAGC
57.806
45.455
0.00
0.00
0.00
4.09
2680
9925
1.742268
GAGCTTCCAATCCTCTGCAAC
59.258
52.381
0.00
0.00
0.00
4.17
2690
9935
1.421268
TCCTCTGCAACCTCAACACAT
59.579
47.619
0.00
0.00
0.00
3.21
2728
9973
3.129852
TCTTGTTCAAACGCACACTTG
57.870
42.857
0.00
0.00
0.00
3.16
2742
9987
3.784338
CACACTTGTCAAACCAAGCAAT
58.216
40.909
1.04
0.00
44.55
3.56
2747
9992
5.809562
CACTTGTCAAACCAAGCAATTTACA
59.190
36.000
1.04
0.00
44.55
2.41
2784
10029
1.200519
TTACCATCTCCCCTTGACCG
58.799
55.000
0.00
0.00
0.00
4.79
2789
10034
0.252742
ATCTCCCCTTGACCGACCTT
60.253
55.000
0.00
0.00
0.00
3.50
2794
10039
1.280998
CCCCTTGACCGACCTTACAAT
59.719
52.381
0.00
0.00
0.00
2.71
2813
10058
9.112725
CTTACAATATCCATCAATCTTCACACA
57.887
33.333
0.00
0.00
0.00
3.72
2815
10060
7.114754
ACAATATCCATCAATCTTCACACAGT
58.885
34.615
0.00
0.00
0.00
3.55
2836
10081
7.593875
CAGTCTTCTGTCTTCTCTTATTTGG
57.406
40.000
0.00
0.00
36.97
3.28
2840
10085
7.759433
GTCTTCTGTCTTCTCTTATTTGGAGAG
59.241
40.741
0.00
0.00
40.35
3.20
2917
10162
4.608951
GATTATCGTTCGGTCTTAGCTGT
58.391
43.478
0.00
0.00
0.00
4.40
2947
10192
3.181475
GGAGACGTCCTTGCTTGATCATA
60.181
47.826
13.01
0.00
40.17
2.15
3001
10246
2.955660
AGCTAGGAAGGAGATCTCAACG
59.044
50.000
23.85
6.13
0.00
4.10
3019
10264
2.582978
GTAAGGAGGCCGGTCCAC
59.417
66.667
13.29
8.57
39.34
4.02
3046
10291
1.293498
GCTCTTGGCGGTTCTCTCA
59.707
57.895
0.00
0.00
0.00
3.27
3049
10294
1.205655
CTCTTGGCGGTTCTCTCATGA
59.794
52.381
0.00
0.00
0.00
3.07
3162
10407
3.772025
CCCTTGACACCTCTGTAGAGATT
59.228
47.826
10.40
0.00
44.74
2.40
3165
10410
5.128499
CCTTGACACCTCTGTAGAGATTGAT
59.872
44.000
10.40
0.00
44.74
2.57
3168
10413
6.663734
TGACACCTCTGTAGAGATTGATAGA
58.336
40.000
10.40
0.00
44.74
1.98
3169
10414
6.770303
TGACACCTCTGTAGAGATTGATAGAG
59.230
42.308
10.40
0.00
44.74
2.43
3170
10415
6.905736
ACACCTCTGTAGAGATTGATAGAGA
58.094
40.000
10.40
0.00
44.74
3.10
3171
10416
7.350382
ACACCTCTGTAGAGATTGATAGAGAA
58.650
38.462
10.40
0.00
44.74
2.87
3219
10464
9.131791
ACTTTGTAGTATGAAACATGAAAAGGT
57.868
29.630
0.00
0.00
31.21
3.50
3225
10470
7.271511
AGTATGAAACATGAAAAGGTTGCAAA
58.728
30.769
0.00
0.00
36.21
3.68
3226
10471
6.998968
ATGAAACATGAAAAGGTTGCAAAA
57.001
29.167
0.00
0.00
36.21
2.44
3227
10472
6.998968
TGAAACATGAAAAGGTTGCAAAAT
57.001
29.167
0.00
0.00
29.72
1.82
3228
10473
7.388460
TGAAACATGAAAAGGTTGCAAAATT
57.612
28.000
0.00
0.00
29.72
1.82
3229
10474
7.824672
TGAAACATGAAAAGGTTGCAAAATTT
58.175
26.923
0.00
2.18
29.72
1.82
3230
10475
7.754027
TGAAACATGAAAAGGTTGCAAAATTTG
59.246
29.630
0.00
0.57
29.72
2.32
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
51
7237
5.515982
TGCGAACAATGAATTAATGCATGTC
59.484
36.000
9.81
7.19
0.00
3.06
139
7326
0.394192
TATCGCCAGCCCATGAAGAG
59.606
55.000
0.00
0.00
0.00
2.85
245
7432
5.022282
TCAAACTTATCTCCATCATGCGA
57.978
39.130
0.00
0.00
0.00
5.10
259
7446
3.934068
GGACTTCACCGGATCAAACTTA
58.066
45.455
9.46
0.00
0.00
2.24
325
7512
2.261671
AGCATTGCAGCTTGCTGC
59.738
55.556
32.88
32.88
46.96
5.25
402
7589
1.291184
CTGCTCCACGAATCGCACAA
61.291
55.000
1.15
0.00
0.00
3.33
419
7606
2.978010
ACCGGCGCCACTTTTCTG
60.978
61.111
28.98
7.02
0.00
3.02
447
7634
1.546323
CCATCAGTGCTGTTTGGGAGT
60.546
52.381
12.69
0.00
34.02
3.85
794
7981
5.248477
AGCCACTACTTATCAGGAAACTTGA
59.752
40.000
0.00
0.00
40.21
3.02
909
8102
0.670546
ACGTTCGAGCCTTCATGGTG
60.671
55.000
0.00
0.00
38.35
4.17
1005
8201
0.108019
AAGGGTTCGCCTTTCGTCTT
59.892
50.000
0.00
0.00
39.67
3.01
1006
8202
0.320508
GAAGGGTTCGCCTTTCGTCT
60.321
55.000
0.00
0.00
42.30
4.18
1007
8203
2.160063
GAAGGGTTCGCCTTTCGTC
58.840
57.895
0.00
0.00
42.30
4.20
1008
8204
4.373771
GAAGGGTTCGCCTTTCGT
57.626
55.556
0.00
0.00
42.30
3.85
1011
8207
0.476771
TGGAAGAAGGGTTCGCCTTT
59.523
50.000
0.00
0.00
39.47
3.11
1015
8211
1.208293
AGAGATGGAAGAAGGGTTCGC
59.792
52.381
0.00
0.00
34.02
4.70
1031
8227
0.678366
GCCGAGTGGAGACAGAGAGA
60.678
60.000
0.00
0.00
44.46
3.10
1033
8229
1.679305
GGCCGAGTGGAGACAGAGA
60.679
63.158
0.00
0.00
44.46
3.10
1038
8234
1.374758
CAGTTGGCCGAGTGGAGAC
60.375
63.158
19.08
0.00
37.49
3.36
1049
8247
1.228245
TGGCTCTTGTCCAGTTGGC
60.228
57.895
0.00
0.00
34.44
4.52
1327
8525
2.914097
AAAGCCACCAGGTGCAGC
60.914
61.111
14.98
13.21
37.19
5.25
1361
8559
0.921347
GTAACAGCAGCGATGGTACG
59.079
55.000
4.50
0.00
32.58
3.67
1444
8642
1.965414
TCAATCCTACCCAGCTTCCA
58.035
50.000
0.00
0.00
0.00
3.53
1482
8680
5.733620
ACACGGTTATTTAGGTCAGAGAA
57.266
39.130
0.00
0.00
0.00
2.87
1522
8728
7.856145
ATCATCACAAACTACAGGATTTCTC
57.144
36.000
0.00
0.00
0.00
2.87
1673
8894
4.261994
GCTCAGAACAAGGATCCTAGCTAG
60.262
50.000
16.55
14.20
0.00
3.42
1695
8916
0.953960
CAACTGGTACCGTGGGAAGC
60.954
60.000
7.57
0.00
0.00
3.86
1907
9128
2.707791
TCATTCTCTGAGCATAAGGGGG
59.292
50.000
0.00
0.00
0.00
5.40
2240
9461
4.457257
GCCTGAAGATGACAACTAAAAGCT
59.543
41.667
0.00
0.00
0.00
3.74
2242
9463
5.006386
AGGCCTGAAGATGACAACTAAAAG
58.994
41.667
3.11
0.00
0.00
2.27
2250
9471
3.507162
TGAAAAGGCCTGAAGATGACA
57.493
42.857
5.69
0.00
0.00
3.58
2326
9547
7.517320
ACCTACATGCTCCATATACAAATTCA
58.483
34.615
0.00
0.00
0.00
2.57
2382
9603
6.612247
TGTGGCTAATGGATAAAACATACG
57.388
37.500
0.00
0.00
0.00
3.06
2444
9671
9.013229
TCAACATTTCACAGTGCTAATTCTTAT
57.987
29.630
0.00
0.00
0.00
1.73
2458
9685
4.946772
TCTTCAGGTTGTCAACATTTCACA
59.053
37.500
17.29
0.00
0.00
3.58
2466
9710
4.504097
GCAACATTTCTTCAGGTTGTCAAC
59.496
41.667
7.20
7.20
41.89
3.18
2491
9736
5.163405
GCACCTGTAATCCTCATGTTCTCTA
60.163
44.000
0.00
0.00
0.00
2.43
2493
9738
3.873952
GCACCTGTAATCCTCATGTTCTC
59.126
47.826
0.00
0.00
0.00
2.87
2503
9748
5.414454
TGTAGTTGAAATGCACCTGTAATCC
59.586
40.000
0.00
0.00
0.00
3.01
2506
9751
5.373222
ACTGTAGTTGAAATGCACCTGTAA
58.627
37.500
0.00
0.00
0.00
2.41
2524
9769
8.908786
AAATGATCAGAAGTTTCAGAACTGTA
57.091
30.769
0.09
0.00
45.18
2.74
2545
9790
6.354938
TCTGATCATCAGGGAAGAAGAAATG
58.645
40.000
14.96
0.00
44.39
2.32
2582
9827
3.327757
AGTTTGTGGGAAGCAGTCAGATA
59.672
43.478
0.00
0.00
0.00
1.98
2602
9847
5.184864
TGTTTCAAGACACCATTTGAACAGT
59.815
36.000
0.00
0.00
41.51
3.55
2649
9894
3.788227
TTGGAAGCTCTGGTGTTGTAT
57.212
42.857
0.00
0.00
0.00
2.29
2663
9908
2.290514
TGAGGTTGCAGAGGATTGGAAG
60.291
50.000
0.00
0.00
0.00
3.46
2680
9925
6.500684
ACAGCTTTTATACATGTGTTGAGG
57.499
37.500
9.11
0.00
0.00
3.86
2690
9935
9.278978
TGAACAAGATTGTACAGCTTTTATACA
57.721
29.630
9.55
0.00
41.31
2.29
2728
9973
5.691754
CCTCTTGTAAATTGCTTGGTTTGAC
59.308
40.000
0.00
0.00
0.00
3.18
2747
9992
8.718656
AGATGGTAAATGCTACTAAATCCTCTT
58.281
33.333
0.00
0.00
0.00
2.85
2784
10029
8.778358
GTGAAGATTGATGGATATTGTAAGGTC
58.222
37.037
0.00
0.00
0.00
3.85
2789
10034
8.267183
ACTGTGTGAAGATTGATGGATATTGTA
58.733
33.333
0.00
0.00
0.00
2.41
2794
10039
6.550938
AGACTGTGTGAAGATTGATGGATA
57.449
37.500
0.00
0.00
0.00
2.59
2813
10058
7.453126
TCTCCAAATAAGAGAAGACAGAAGACT
59.547
37.037
0.00
0.00
37.44
3.24
2815
10060
7.453126
ACTCTCCAAATAAGAGAAGACAGAAGA
59.547
37.037
7.12
0.00
42.39
2.87
2840
10085
3.146066
TGGTTATGGTGCAAGAGTGAAC
58.854
45.455
0.00
0.00
31.60
3.18
2894
10139
3.664486
CAGCTAAGACCGAACGATAATCG
59.336
47.826
0.00
0.00
46.93
3.34
2917
10162
3.058160
GGACGTCTCCCGGTCGAA
61.058
66.667
16.46
0.00
42.24
3.71
2947
10192
6.194235
CCTCTTGATAGATAGGTGGAGCTAT
58.806
44.000
0.00
0.00
30.76
2.97
3001
10246
2.686106
TGGACCGGCCTCCTTACC
60.686
66.667
12.06
2.54
37.63
2.85
3046
10291
2.369257
CTGGCCTCCGCACGTATCAT
62.369
60.000
3.32
0.00
36.38
2.45
3049
10294
2.758327
TCTGGCCTCCGCACGTAT
60.758
61.111
3.32
0.00
36.38
3.06
3096
10341
2.819595
GGCTTCTCGGCATCGCAA
60.820
61.111
0.00
0.00
38.25
4.85
3162
10407
5.280499
TGAACCTGAATCCCTTCTCTATCA
58.720
41.667
0.00
0.00
32.29
2.15
3165
10410
4.033709
CCTGAACCTGAATCCCTTCTCTA
58.966
47.826
0.00
0.00
32.29
2.43
3168
10413
2.637165
ACCTGAACCTGAATCCCTTCT
58.363
47.619
0.00
0.00
32.29
2.85
3169
10414
4.164221
TCATACCTGAACCTGAATCCCTTC
59.836
45.833
0.00
0.00
0.00
3.46
3170
10415
4.111577
TCATACCTGAACCTGAATCCCTT
58.888
43.478
0.00
0.00
0.00
3.95
3171
10416
3.736094
TCATACCTGAACCTGAATCCCT
58.264
45.455
0.00
0.00
0.00
4.20
3201
10446
7.475771
TTTGCAACCTTTTCATGTTTCATAC
57.524
32.000
0.00
0.00
0.00
2.39
3202
10447
8.674263
ATTTTGCAACCTTTTCATGTTTCATA
57.326
26.923
0.00
0.00
0.00
2.15
3203
10448
6.998968
TTTTGCAACCTTTTCATGTTTCAT
57.001
29.167
0.00
0.00
0.00
2.57
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.